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text: black blowfly

text: Carcass 4 larval mass third instar Phormia regina at 132 hours

characteristic: description

text: Deciduous Forest

characteristic: environment (biome)

text: Field

text: Sus scrofa carcass

text: USA

text: Third instar

text: host-associated

text: mimarks-survey

text: Phormia regina

text: Phormia regina

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

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characteristic: ENA-CHECKLIST

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text: Michigan State University

text: public

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text: black blowfly

characteristic: common name

text: Carcass 5 larval mass third instar Phormia regina at 132 hours

text: Deciduous Forest

text: Field

characteristic: environment (feature)

text: Sus scrofa carcass

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

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text: Third instar

characteristic: host life stage

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Phormia regina

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text: Illumina MiSeq

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characteristic: ENA-LAST-UPDATE

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text: Michigan State University

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: black blowfly

text: Carcass 6 larval mass third instar Phormia regina at 132 hours

characteristic: description

text: Deciduous Forest

characteristic: environment (biome)

text: Field

text: Sus scrofa carcass

text: USA

characteristic: geographic location (country and/or sea)

text: Third instar

text: host-associated

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characteristic: investigation type

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text: Phormia regina

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characteristic: ENA-CHECKLIST

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text: Michigan State University

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: black blowfly

characteristic: common name

text: Carcass 1 larval mass third instar Phormia regina at 156 hours

text: Deciduous Forest

text: Field

characteristic: environment (feature)

text: Sus scrofa carcass

characteristic: environment (material)

text: USA

text: Third instar

text: host-associated

text: mimarks-survey

text: Phormia regina

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text: Illumina MiSeq

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characteristic: ENA-LAST-UPDATE

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text: Michigan State University

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: black blowfly

text: Adult Phormia regina near carcass 1 at 12 hours

characteristic: description

text: Deciduous Forest

characteristic: environment (biome)

text: Field

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text: USA

characteristic: geographic location (latitude)

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text: Adult

characteristic: host life stage

text: host-associated

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text: mimarks-survey

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characteristic: ENA-CHECKLIST

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text: Michigan State University

text: public

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text: black blowfly

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text: Adult Phormia regina near carcass 1 at 36 hours

text: Deciduous Forest

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characteristic: environment (feature)

text: Sus scrofa carcass

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text: USA

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text: Michigan State University

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text: black blowfly

text: Adult Phormia regina near carcass 1 at 72 hours

characteristic: description

text: Deciduous Forest

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text: Field

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text: host-associated

text: mimarks-survey

text: Phormia regina

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text: Illumina MiSeq

characteristic: sequencing method

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text: black blowfly

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text: Adult Phormia regina near carcass 1 at 84 hours

text: Deciduous Forest

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characteristic: environment (feature)

text: Sus scrofa carcass

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text: USA

characteristic: geographic location (latitude)

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text: Adult

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text: mimarks-survey

text: Phormia regina

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characteristic: ENA-LAST-UPDATE

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text: black blowfly

text: Adult Phormia regina near carcass 1 at 108 hours

characteristic: description

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characteristic: environment (biome)

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characteristic: geographic location (country and/or sea)

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characteristic: investigation type

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characteristic: ENA-CHECKLIST

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characteristic: SRA accession

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text: black blowfly

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text: Adult Phormia regina near carcass 2 at 12 hours

text: Deciduous Forest

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characteristic: environment (feature)

text: Sus scrofa carcass

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text: USA

text: Adult

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text: Phormia regina

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text: black blowfly

text: Adult Phormia regina near carcass 2 at 36 hours

characteristic: description

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text: Field

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text: host-associated

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text: mimarks-survey

text: Phormia regina

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characteristic: ENA-CHECKLIST

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text: black blowfly

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text: Adult Phormia regina near carcass 2 at 84 hours

text: Deciduous Forest

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characteristic: environment (feature)

text: Sus scrofa carcass

characteristic: environment (material)

text: USA

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characteristic: ENA-LAST-UPDATE

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text: black blowfly

text: Adult Phormia regina near carcass 2 at 108 hours

characteristic: description

text: Deciduous Forest

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text: Field

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text: mimarks-survey

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text: black blowfly

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text: Adult Phormia regina near carcass 3 at 12 hours

text: Deciduous Forest

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characteristic: environment (feature)

text: Sus scrofa carcass

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text: USA

characteristic: geographic location (latitude)

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characteristic: ENA-LAST-UPDATE

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text: Adult Phormia regina near carcass 3 at 36 hours

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text: Adult Phormia regina near carcass 3 at 108 hours

characteristic: description

text: Deciduous Forest

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text: Field

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text: USA

characteristic: geographic location (latitude)

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text: mimarks-survey

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characteristic: ENA-CHECKLIST

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text: Deciduous Forest

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text: Sus scrofa carcass

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text: mimarks-survey

text: Phormia regina

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text: Sus scrofa carcass

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characteristic: ENA-LAST-UPDATE

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characteristic: environment (biome)

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characteristic: geographic location (country and/or sea)

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text: black blowfly

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text: Adult Phormia regina near carcass 6 at 12 hours

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characteristic: environment (feature)

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text: Adult Phormia regina near carcass 6 at 36 hours

characteristic: description

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characteristic: environment (biome)

text: Field

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characteristic: geographic location (latitude)

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characteristic: host life stage

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text: mimarks-survey

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characteristic: ENA-CHECKLIST

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text: black blowfly

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text: Adult Phormia regina near carcass 6 at 84 hours

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characteristic: environment (feature)

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characteristic: geographic location (country and/or sea)

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text: black blowfly

text: North perimeter adult Phormia regina before placement

characteristic: description

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characteristic: environment (biome)

text: Field

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text: South perimeter adult Phormia regina before placement

text: Deciduous Forest

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text: Raw liver bait

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text: USA

characteristic: geographic location (latitude)

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text: Adult

characteristic: host life stage

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text: mimarks-survey

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characteristic: ENA-LAST-UPDATE

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text: Michigan State University

characteristic: INSDC center name

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text: black blowfly

text: West perimeter adult Phormia regina before placement

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text: Deciduous Forest

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text: Field

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characteristic: geographic location (country and/or sea)

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text: black blowfly

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text: East perimeter adult Phormia regina during decomposition

text: Deciduous Forest

text: Field

characteristic: environment (feature)

text: Raw liver bait

characteristic: environment (material)

text: USA

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text: mimarks-survey

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text: black blowfly

text: South perimeter adult Phormia regina during decomposition

characteristic: description

text: Deciduous Forest

characteristic: environment (biome)

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text: Raw liver bait

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Adult

characteristic: host life stage

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characteristic: host-associated environmental package

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characteristic: ENA-CHECKLIST

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characteristic: geographic location (country and/or sea)

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text: Michigan State University

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: black blowfly

characteristic: common name

text: South perimeter adult Phormia regina after decomposition

text: Deciduous Forest

text: Field

characteristic: environment (feature)

text: Raw liver bait

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Adult

characteristic: host life stage

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Phormia regina

text: Phormia regina

text: Illumina MiSeq

text: 16S rRNA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Michigan State University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: black blowfly

text: West perimeter adult Phormia regina after decomposition

characteristic: description

text: Deciduous Forest

characteristic: environment (biome)

text: Field

text: Raw liver bait

text: USA

characteristic: geographic location (country and/or sea)

text: Adult

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: Phormia regina

characteristic: organism

characteristic: project name

text: Phormia regina

text: Illumina MiSeq

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Genome Analysis Centre

text: public

characteristic: SRA accession

tag: Namespace:The Genome Analysis Centre

characteristic: Submitter Id

text: Pgt

characteristic: common name

text: Puccinia graminis f. sp. tritici

text: Puccinia graminis f. sp. tritici

text: Stem rust UK study

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Genome Analysis Centre

text: public

text: Puccinia graminis f. sp. avenae

text: Puccinia graminis f. sp. avenae

text: Stem rust UK study


text: TGAC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: BAMBI project patient P10N gut microbiome

text: Homo sapiens

text: Homo sapiens

text: BAMBI patient P10, sample N


BAMBI P10R Illumina

text: TGAC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BAMBI P10R Illumina

text: human

text: BAMBI pre-term baby microbiome project

text: Homo sapiens

text: Homo sapiens

text: BAMBI patient P10, sample R


Illumina BAMBI P10V

text: TGAC

text: public

text: Illumina BAMBI P10V

text: human

text: BAMBI pre-term baby microbiome project, patient P10, sample point V

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: BAMBI patient P10, sample V


Mock

text: TGAC

text: public

text: Mock

text: human

text: Human Microbiome Project mock community from BEI resources HM-277D

text: Homo sapiens

text: Homo sapiens

text: HMP Mock Community Illumina


KLEBISOLATE

text: TGAC

text: public

text: KLEBISOLATE

text: Klebsiella pneumoniae isolated from P8 BAMBI smaple

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella isolate


P10N 16S

text: TGAC

text: public

text: P10N 16S

text: human

text: Homo sapiens

text: Homo sapiens

text: 16S amplcon sequencing of sample P10N


P10V 16S

text: TGAC

text: public

text: P10V 16S

text: human

text: Homo sapiens

text: Homo sapiens

text: 16S amplcon sequencing of sample P10V


Nanopore P10N

text: TGAC

text: public

text: Nanopore P10N

text: human

text: Homo sapiens

text: Homo sapiens

text: BAMBI patient P10, sample N, nanopore sequencing


Nanopore P10R

text: TGAC

text: public

text: Nanopore P10R

text: human

text: Homo sapiens

text: Homo sapiens

text: BAMBI patient P10, sample R, nanopore sequencing


Nanopore P10V

text: TGAC

text: public

text: Nanopore P10V

text: human

text: Homo sapiens

text: Homo sapiens

text: BAMBI patient P10, sample V, nanopore sequencing


text: ANAND

text: public

characteristic: collection date

text: chicken

text: Ceacum microbiome

text: chicken gut

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: cecal content

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: Gallus gallus

text: Pilot Study DBT-BBSRC

text: Gallus gallus

text: Illumina Miseq

characteristic: sequencing method

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Auckland University of Technology

text: public

characteristic: SRA accession

tag: Namespace:Auckland University of Technology

characteristic: Submitter Id

text: air

characteristic: air environmental package

text: Air samples collected using polycarbonate filter (pore size 0.2um) on the building in Yongin city, Korea

text: air

text: atmosphere

text: aerosol

unit: m

characteristic: geographic location (altitude)

text: South Korea

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

characteristic: organism

text: Analysis of the dust effects on airborne bacterial dynamics

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

text: Air samples collected in Yongin city, Korea

characteristic: title


characteristic: External Id

text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: air

characteristic: collection date

text: Air samples collected using polycarbonate filter (pore size 0.2um) on the building in Yonago city, Japan

characteristic: description

text: air

characteristic: environment (biome)

text: atmosphere

characteristic: environment (feature)

text: aerosol

characteristic: environment (material)

text: Japan

text: mimarks-survey

text: uncultured bacterium

text: uncultured bacterium

text: Illumina MiSeq

text: Air samples collected in Yonago city, Japan


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF GLASGOW

characteristic: Submitter Id

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

characteristic: sex

text: Female Midgut

characteristic: tissue lib

text: Midgut

characteristic: tissue type


characteristic: External Id

text: Rega Insitute KU Leuven

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Rega Insitute  KU Leuven

text: ArrayExpress

characteristic: broker name

text: lung microvascular endothelial cell

characteristic: cell type

text: house mouse

text: Protocols: Murine lung endothelial cell line (L2 MVEC) was seeded in 6 well plates at the concentration of 5*10^4 cells/mL. After expanding the cells for 24 hours, they were washed with medium and stimulated for 24 hours with combinations of murine IFN-gamma (20 ng/mL) and dexamethasone (100 nM). RNA was extracted with RNeasy Mini Kit (Qiagen) according to the manufacturer's protocol. Purity of RNA was determined by NanoDrop and quality was assesed with RIN measurement (value of 10 for all samples). Per independent experiment RNA from 3 technical replicates per experimental condition was pooled and 3μg RNA/experimental condition were sequenced from a total of 3 independent experiments. Illumina TruSeq stranded mRNA kit was used and the single-end sequencing was performed. 50bp reads were sequenced.

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung parenchyma

characteristic: organism part

text: Mus musculus

text: CBA/CaJ

characteristic: strain

characteristic: title


E-MTAB-5921:Dexamethasone 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Rega Insitute KU Leuven

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5921:Dexamethasone 1

text: ArrayExpress

text: lung microvascular endothelial cell

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: lung parenchyma

text: Mus musculus

text: CBA/CaJ

text: Dexamethasone 1


characteristic: ENA-LAST-UPDATE

text: TEAGASC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: pig 1 faeces weaning

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text: TEAGASC

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E-MTAB-5986:Sample 1

text: Sanger Institute

text: public

text: E-MTAB-5986:Sample 1

tag: Namespace:Sanger Institute

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Cells were obtained from E15.5 mouse ventral midbrain tissue through laser capture of tyrosine hydroxylase stained brain sections Total RNA was extracted using Arcturus Pico pure RNA extraction kit according to manufacturer protocol Trueseq illumina library construction protocol was used according to manufacturer specifications.

text: embryonic day 15.5

characteristic: developmental stage

text: gene knock out

characteristic: genetic modification

text: Lmx1a and Lmx1b knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: midbrain

text: ventral midbrain tissue

characteristic: sampling site

text: Mus musculus

text: Sample 1


E-MTAB-5986:Sample 2

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: public

text: E-MTAB-5986:Sample 2

text: ArrayExpress

text: house mouse

text: embryonic day 15.5

text: gene knock out

text: Lmx1a and Lmx1b knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: midbrain

characteristic: organism part

text: ventral midbrain tissue

text: Mus musculus

characteristic: strain

text: Sample 2

characteristic: title


E-MTAB-5986:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5986:Sample 3

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 15.5

text: gene knock out

text: Lmx1a and Lmx1b knockout

text: Mus musculus

text: Mus musculus

text: midbrain

text: ventral midbrain tissue

text: Mus musculus

text: Sample 3


E-MTAB-5986:Sample 4

characteristic: External Id

text: Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5986:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 15.5

text: gene knock out

text: Lmx1a and Lmx1b knockout

text: Mus musculus

text: Mus musculus

text: midbrain

text: ventral midbrain tissue

text: Mus musculus

text: Sample 4


E-MTAB-5986:Sample 5

text: Sanger Institute

text: public

text: E-MTAB-5986:Sample 5

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 15.5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: midbrain

text: ventral midbrain tissue

text: Mus musculus

text: Sample 5


E-MTAB-5986:Sample 6

characteristic: ENA-CHECKLIST

text: Sanger Institute

text: public

text: E-MTAB-5986:Sample 6

text: ArrayExpress

text: house mouse

text: embryonic day 15.5

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: midbrain

characteristic: organism part

text: ventral midbrain tissue

characteristic: sampling site

text: Mus musculus

text: Sample 6


E-MTAB-5986:Sample 7

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Sanger Institute

text: public

text: E-MTAB-5986:Sample 7

text: ArrayExpress

text: house mouse

text: embryonic day 15.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: midbrain

text: ventral midbrain tissue

text: Mus musculus

characteristic: strain

text: Sample 7

characteristic: title


characteristic: External Id

text: Michigan State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: pig

text: Carcass 1 mouth swab at 0 hours

characteristic: description

text: Deciduous Forest

characteristic: environment (biome)

text: Field

characteristic: environment (feature)

text: Carcass

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Sus scrofa

characteristic: project name

text: Sus scrofa

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Michigan State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: pig

characteristic: common name

text: Carcass 1 mouth swab at 24 hours

text: Deciduous Forest

text: Field

text: Carcass

text: USA

text: host-associated

text: mimarks-survey

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: Illumina MiSeq

text: 16S rRNA

characteristic: title