text: MASARYK UNIVERSITY

text: public

text: stool

characteristic: bio material

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 121, flocked swab, QIAmp DNA Stool Mini Kit


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASARYK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MASARYK UNIVERSITY

characteristic: Submitter Id

characteristic: age

text: stool

text: human

characteristic: common name

text: QIAmp DNA Stool Mini Kit

characteristic: isolation kit

text: QS

text: Homo sapiens

characteristic: organism

text: flocked swab

text: FSW

text: Homo sapiens

text: female

characteristic: sex

text: Person 122, flocked swab, QIAmp DNA Stool Mini Kit

characteristic: title


text: MASARYK UNIVERSITY

text: public

text: stool

characteristic: bio material

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 123, flocked swab, QIAmp DNA Stool Mini Kit


characteristic: ENA-CHECKLIST

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 124, flocked swab, QIAmp DNA Stool Mini Kit


characteristic: ENA-FIRST-PUBLIC

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 125, flocked swab, QIAmp DNA Stool Mini Kit


characteristic: ENA-LAST-UPDATE

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 126, flocked swab, QIAmp DNA Stool Mini Kit


characteristic: External Id

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 111, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

characteristic: INSDC center name

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 112, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

characteristic: INSDC first public

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 113, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

characteristic: INSDC last update

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 114, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: INSDC status

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 115, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: SRA accession

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 116, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: Submitter Id

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 117, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: age

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 118, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

characteristic: common name

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 119, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

characteristic: isolation kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 120, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

characteristic: organism

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 121, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

characteristic: sex

text: Person 122, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 123, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit

characteristic: title


text: MASARYK UNIVERSITY

text: public

text: stool

characteristic: bio material

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 124, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


characteristic: ENA-CHECKLIST

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: male

text: Person 125, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


characteristic: ENA-FIRST-PUBLIC

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: flocked swab

text: FSW

text: Homo sapiens

text: female

text: Person 126, flocked swab, PowerLyzer PowerSoil DNA Isolation Kit


characteristic: ENA-LAST-UPDATE

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 111, cotton swab, QIAmp DNA Stool Mini Kit


characteristic: External Id

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 112, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

characteristic: INSDC center name

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 113, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

characteristic: INSDC first public

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 114, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

characteristic: INSDC last update

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 115, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

characteristic: INSDC status

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 116, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

characteristic: SRA accession

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 117, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

characteristic: Submitter Id

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 118, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

characteristic: age

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 119, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

characteristic: common name

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 120, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

characteristic: isolation kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 121, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

characteristic: organism

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 122, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

characteristic: sex

text: Person 123, cotton swab, QIAmp DNA Stool Mini Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 124, cotton swab, QIAmp DNA Stool Mini Kit

characteristic: title


text: MASARYK UNIVERSITY

text: public

text: stool

characteristic: bio material

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 125, cotton swab, QIAmp DNA Stool Mini Kit


characteristic: ENA-CHECKLIST

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: QIAmp DNA Stool Mini Kit

text: QS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 126, cotton swab, QIAmp DNA Stool Mini Kit


characteristic: ENA-FIRST-PUBLIC

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 111, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


characteristic: ENA-LAST-UPDATE

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 112, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


characteristic: External Id

text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 113, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

characteristic: INSDC center name

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 114, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

characteristic: INSDC first public

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 115, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

characteristic: INSDC last update

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 116, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: INSDC status

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 117, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: SRA accession

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 118, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: Submitter Id

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 119, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

characteristic: age

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 120, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

characteristic: common name

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 121, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

characteristic: isolation kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 122, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

characteristic: organism

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 123, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

characteristic: sex

text: Person 124, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


text: MASARYK UNIVERSITY

text: public

text: stool

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: male

text: Person 125, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit

characteristic: title


text: MASARYK UNIVERSITY

text: public

text: stool

characteristic: bio material

text: human

text: PowerLyzer PowerSoil DNA Isolation Kit

text: PS

text: Homo sapiens

text: cotton swab

text: CSW

text: Homo sapiens

text: female

text: Person 126, cotton swab, PowerLyzer PowerSoil DNA Isolation Kit


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Biology, University of Bergen

text: ArrayExpress

characteristic: broker name

text: leukocyte

characteristic: cell type

text: lumpfish

text: Protocols: Farmed lumpfish (C. lumpus L.) were provided from Fjord Forsk Sogn AS, a commercial breeder in Sogn & Fjordane County, Norway. The fish were kept in a 500 L tank at the Aquatic and Industrial Laboratory (ILAB) within the High-Technology Centre in Bergen under normal rearing conditions with a light regime 12h light: 12h dark. The water temperature was 8ºC, salinity 34 PSU and a minimum of 77% oxygen in the outlet water. The fish were fed with the commercial dry feed Amber Neptune (3 mm). Head kidney leukocytes were isolated as described previously using discontinuous Percoll gradients 49. Both left and right kidney lobes from 15 fish were included. Cell number, viability and aggregation factor was determined using a CASY Cell Counter™ (Innovatis AG). For in vitro bacterial exposure, 5 x 106 cells in L-15+ medium without antibiotics were added to each well in a 24-well plate (Nunc) and mixed with the bacteria Vibrio anguillarum O1 (MOI 1:10) in a total volume of 0.5 mL. In wells with non-exposed cells, medium was added instead of bacteria. The plates were incubated at 15ºC. After 1.5 hour, pencillin/streptomycin was added to each well and the plates were further incubated until 6hrs and 24 hours post exposed. In order to obtain an as comprehensive transcriptome as possible, a sample with leukocytes exposed with infectious pancreatic necrosis virus for 24 hrs was also included The bacteria was grown in tryptic soy broth containing 2.0% NaCl, at 20 degrees celcius and at 200 revolutions per minute. The bacteria were harvested in late exponential phase. 5x10^6 head kidney leukocytes in L-15+ medium without antibiotics were added to each well in a 24-well plate (Nunc) and mixed with the bacteria Vibrio anguillarum O1 (5*10^7 bacteria) in a total volume of 0.5 mL. In wells with non-exposed cells, medium was added instead of bacteria. The plates were incubated at 15ºC. After 1.5 hour, pencillin/streptomycin was added to each well and the plates were further incubated until 6hrs and 24 hours post exposed. Total RNA was isolated using GeneElute Mammalian Total RNA miniprep kit (Sigma) according to the manufacturer’s instructions. Samples were treated with DNase I (Sigma) to removed traces of genomic DNA and the concentration of total RNA determined in a Nanodrop®ND-1000 UV-Vis spectrophotometer (Nanodrop Technologies). Total RNA extracts from five fish were pooled, 1000 ng from each fish, making three parallels from each time point in the de novo RNA sequencing. The pooled RNA (5 µg) was cleaned using RNA clean & concentrator-5 (zymo research) according to the manufacturer’s instructions and the quality of the RNA were determined in an Agilent 2100 bioanalyzer. RNA isolated from virus infected leukocytes was kept separately. The RQI values were in the range 6.3-9.3. The Norwegian High Throughput Sequencing Centre prepared sequencing libraries using TruSeq™RNA sample Preparation kit (Illumina®) according to the manufacturer’s protocol

characteristic: description

text: adult

characteristic: developmental stage

text: Skretting, Amber Neptune 3 millimeter pellets

characteristic: diet

text: mixed pool of fish 1 to 5

characteristic: individual

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Biology, University of Bergen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: mixed pool of fish 6, 7, 9, 10

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus


text: public

characteristic: Submitter Id

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

text: adult

text: mixed pool of fish 11 to 15

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: leukocyte

characteristic: cell type

text: lumpfish

characteristic: description

text: adult

text: mixed pool of fish 1 to 5

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus


text: public

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

characteristic: developmental stage

characteristic: diet

text: mixed pool of fish 6 to 10

characteristic: individual

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

characteristic: organism part

text: Cyclopterus lumpus


name: E-MTAB-6388:IPNV treated 24 hours 1. parallell

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: mixed pool of fish 14 and 15

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

text: IPNV treated 24 hours 1. parallell


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: leukocyte

text: lumpfish

text: adult

text: mixed pool of fish 1 to 4

text: Cyclopterus lumpus

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus


text: public

characteristic: Submitter Id

text: ArrayExpress

text: leukocyte

text: lumpfish

characteristic: common name

text: adult

text: mixed pool of fish 6 to 8

text: Cyclopterus lumpus

characteristic: organism

text: Cyclopterus lumpus

text: head kidney

text: Cyclopterus lumpus

characteristic: title


text: Leishmania donovani

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

characteristic: subject id


text: UNIVERSITY OF BRITISH COLUMBIA

text: public

tag: Namespace:UNIVERSITY OF BRITISH COLUMBIA

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Peru

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: UNonMeta F & R / E572F & E1009R

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: Eukaryome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU Bioinformatics

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:DTU Bioinformatics

characteristic: Submitter Id

text: Hvidovre Hospital

characteristic: collected by

text: Staphylococcus aureus

characteristic: common name

characteristic: description

text: No

text: Denmark

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: patient sample

characteristic: isolation source host associated

text: hospital ICU

characteristic: isolation source non-host-associated

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

characteristic: env feature

text: sediment

characteristic: env package

text: feces

text: NZ:North Island

characteristic: geo loc name

text: kakapo

characteristic: host common name

text: Strigops habroptilus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: ancient

text: gut metagenome

characteristic: organism

text: LTEL

text: TRUE

text: Stool

characteristic: sample type

text: gut metagenome

text: Coprolites reveal ecological interactions lost with the extinction of New Zealand birds

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

text: cave

text: sediment

text: feces

text: NZ:North Island

text: kakapo

text: Strigops habroptilus

characteristic: host scientific name

text: ancient

text: gut metagenome

text: ACAD

text: TRUE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

text: Not applcable

characteristic: body habitat

text: Not applcable

characteristic: body product

text: Not applcable

characteristic: body site

text: Control Blank

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: Australia:South Australia

characteristic: geo loc name

text: Not applcable

characteristic: host common name

text: Not applcable

characteristic: host subject id

text: Not applcable

characteristic: host taxid

characteristic: latitude

text: modern

text: metagenome

text: ACAD

text: FALSE

text: Control Blank

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Not applcable

text: Not applcable

text: Not applcable

text: Control Blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: Australia:South Australia

text: Not applcable

text: Not applcable

text: Not applcable

characteristic: longitude

text: modern

text: metagenome

characteristic: organism

text: ACAD

text: FALSE

text: Control Blank

characteristic: sample type

text: metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Not applcable

characteristic: body habitat

text: Not applcable

characteristic: body product

text: Not applcable

characteristic: body site

text: Control Blank

characteristic: description

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: Australia:South Australia

characteristic: geo loc name

text: Not applcable

text: Not applcable

characteristic: host scientific name

text: neg.extr.modern

text: Not applcable

text: modern

text: metagenome

text: ACAD

text: FALSE

text: Control Blank

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.cassowary.24664

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stool

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: zoological garden

text: built environment

text: feces

text: USA:TX

text: Southern cassowary

characteristic: host common name

text: Casuarius casuarius

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: modern

text: gut metagenome

text: UCSDMI

text: FALSE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_11507:11507.ratite.cassowary.24664.2

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stool

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: zoological garden

text: built environment

text: feces

text: USA:TX

text: Southern cassowary

text: Casuarius casuarius

characteristic: longitude

text: modern

text: gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.cassowary.acad

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stool

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: zoological garden

characteristic: env feature

text: built environment

characteristic: env package

text: feces

text: Australia:South Australia

characteristic: geo loc name

text: Southern cassowary

text: Casuarius casuarius

characteristic: host scientific name

text: ratite.cassowary.acad

text: modern

text: gut metagenome

text: ACAD

text: FALSE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stool

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: zoological garden

text: built environment

text: feces

text: Australia:South Australia

text: Southern cassowary

characteristic: host common name

text: Casuarius casuarius

text: ratite.emu.acad

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: modern

text: gut metagenome

text: ACAD

text: FALSE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.kiwi.apt.aus.man.SanD8i.1

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stool

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: zoological garden

text: built environment

text: feces

text: USA:CA

text: brown kiwi

text: Apteryx australis

characteristic: longitude

text: modern

text: gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

characteristic: env feature

text: sediment

characteristic: env package

text: feces

text: NZ: South Island

characteristic: geo loc name

text: South Island giant moa

text: Dinornis robustus

characteristic: host scientific name

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: South Island giant moa

characteristic: host common name

text: Dinornis robustus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: little bush moa

text: Anomalopteryx didiformis

characteristic: longitude

text: ancient

text: gut metagenome

characteristic: organism

text: LTEL

text: TRUE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

text: cave

characteristic: env feature

text: sediment

characteristic: env package

text: feces

text: NZ: South Island

characteristic: geo loc name

text: upland moa

text: Megalapteryx didinus

characteristic: host scientific name

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: heavy footed moa

characteristic: host common name

text: Pachyornis elephantopus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.moa.a10500.1

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: upland moa

text: Megalapteryx didinus

characteristic: longitude

text: ancient

text: gut metagenome

characteristic: organism

text: LTEL

text: TRUE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

characteristic: env feature

text: sediment

characteristic: env package

text: feces

text: NZ: South Island

characteristic: geo loc name

text: heavy footed moa

text: Pachyornis elephantopus

characteristic: host scientific name

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: temperate shrubland biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: upland moa

characteristic: host common name

text: Megalapteryx didinus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: temperate shrubland biome

characteristic: env biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: heavy footed moa

text: Pachyornis elephantopus

characteristic: longitude

text: ancient

text: gut metagenome

characteristic: organism

text: LTEL

text: TRUE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: temperate shrubland biome

text: cave

characteristic: env feature

text: sediment

characteristic: env package

text: feces

text: NZ: South Island

characteristic: geo loc name

text: heavy footed moa

text: Pachyornis elephantopus

characteristic: host scientific name

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: little bush moa

characteristic: host common name

text: Anomalopteryx didiformis

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.moa.acad.10500

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Coprolite

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

text: cave

text: sediment

text: feces

text: NZ: South Island

text: upland moa

text: Megalapteryx didinus

characteristic: longitude

text: ancient

text: gut metagenome

characteristic: organism

text: LTEL

text: TRUE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_11507:11507.ratite.moa.acad.10501

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Coprolite

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: forest biome

characteristic: env biome

text: cave

characteristic: env feature

text: sediment

characteristic: env package

text: feces

text: NZ: South Island

characteristic: geo loc name

text: little bush moa

text: Anomalopteryx didiformis

characteristic: host scientific name

text: ancient

text: gut metagenome

text: LTEL

text: TRUE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.ostrich.25734

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stool

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: zoological garden

text: built environment

text: feces

text: USA:TX

text: ostrich

characteristic: host common name

text: Struthio camelus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: modern

text: gut metagenome

text: UCSDMI

text: FALSE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_11507:11507.ratite.ostrich.25734.2

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stool

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: zoological garden

text: built environment

text: feces

text: USA:TX

text: ostrich

text: Struthio camelus

characteristic: longitude

text: modern

text: gut metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.ostrich.25735

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stool

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: zoological garden

characteristic: env feature

text: built environment

characteristic: env package

text: feces

text: USA:TX

characteristic: geo loc name

text: ostrich

text: Struthio camelus

characteristic: host scientific name

text: modern

text: gut metagenome

text: UCSDMI

text: FALSE

text: Stool

text: gut metagenome


text: UCSDMI

text: public

characteristic: SRA accession

text: qiita_sid_11507:11507.ratite.ostrich.25735.2

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stool

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: zoological garden

text: built environment

text: feces

text: USA:TX

text: ostrich

characteristic: host common name

text: Struthio camelus

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

text: modern

text: gut metagenome

text: UCSDMI

text: FALSE

text: Stool

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11507:11507.ratite.ostrich.acad.4

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Stool

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: zoological garden

text: built environment

text: feces

text: Australia:South Australia

text: ostrich

text: Struthio camelus

characteristic: longitude

text: modern

text: gut metagenome

characteristic: organism

text: ACAD

text: FALSE

text: Stool

characteristic: sample type

text: gut metagenome

characteristic: title


text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Stool

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: zoological garden

characteristic: env feature

text: built environment

characteristic: env package

text: feces

text: Australia:South Australia

characteristic: geo loc name

text: rhea

text: Rhea americana

characteristic: host scientific name

text: ratite.rhea.acad

text: modern

text: gut metagenome

text: ACAD

text: FALSE

text: Stool

text: gut metagenome


text: Acinetobacter baumannii

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Acinetobacter baumannii

characteristic: common name

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: subject id


text: Enterobacter cloacae

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Enterobacter cloacae

text: Enterobacter cloacae

characteristic: organism

text: Enterobacter cloacae

characteristic: title


text: Citrobacter freundii

text: SC

text: public

text: Citrobacter freundii

text: Citrobacter freundii

text: Citrobacter freundii


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Hafnia alvei

text: SC

text: public

text: Hafnia alvei

text: Hafnia alvei

text: Hafnia alvei


E-MTAB-6392:Sample 1

text: PostDoc at Diabetes Center in UCSF

text: public

text: E-MTAB-6392:Sample 1

tag: Namespace:PostDoc at Diabetes Center in UCSF

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: micro-dissection from inguinal WAT of the mice Qiagen RNeasy extraction kit Libraries were generated according to TruSeq Stranded Total RNA Sample Protocol

characteristic: description

text: Myod-Cre; mTmG reporter

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: white adipose tissue

characteristic: organism part

text: GFP-positive

characteristic: phenotype

text: inguinal region

characteristic: sampling site

text: Mus musculus

characteristic: strain

text: Sample 1


E-MTAB-6392:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PostDoc at Diabetes Center in UCSF

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6392:Sample 2

text: ArrayExpress

text: house mouse

text: Myod-Cre; mTmG reporter

text: Mus musculus

text: Mus musculus

text: white adipose tissue

text: GFP-positive

text: inguinal region

text: Mus musculus

text: Sample 2


E-MTAB-6392:Sample 3

text: PostDoc at Diabetes Center in UCSF

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6392:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Myod-Cre; mTmG reporter

text: Mus musculus

text: Mus musculus

text: white adipose tissue

text: GFP-positive

text: inguinal region

text: Mus musculus

text: Sample 3


E-MTAB-6392:Sample 4

text: PostDoc at Diabetes Center in UCSF

text: public

text: E-MTAB-6392:Sample 4

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Myod-Cre; mTmG reporter

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: white adipose tissue

text: GFP-negative

text: inguinal region

text: Mus musculus

text: Sample 4

characteristic: title


E-MTAB-6392:Sample 5

text: PostDoc at Diabetes Center in UCSF

text: public

text: E-MTAB-6392:Sample 5

text: ArrayExpress

text: house mouse

text: Myod-Cre; mTmG reporter

characteristic: individual

text: Mus musculus

text: Mus musculus

text: white adipose tissue

characteristic: organism part

text: GFP-negative

characteristic: phenotype

text: inguinal region

characteristic: sampling site

text: Mus musculus

characteristic: strain

text: Sample 5


E-MTAB-6392:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PostDoc at Diabetes Center in UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-6392:Sample 6

text: ArrayExpress

text: house mouse

text: Myod-Cre; mTmG reporter

text: Mus musculus

text: Mus musculus

text: white adipose tissue

text: GFP-negative

text: inguinal region

text: Mus musculus

text: Sample 6


text: EMBL - AUSTRALIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:EMBL - AUSTRALIA

characteristic: Submitter Id

text: Cryptolestes ferrugineus

text: Cryptolestes ferrugineus

text: Cryptolestes ferrugineus adults from a phosphine strong resistant strain (CF73)


text: SOUTHERN MEDICAL UNIVERSITY

text: public

tag: Namespace:SOUTHERN MEDICAL UNIVERSITY

text: Southern Medical University

characteristic: collecting institution

characteristic: collection date

text: Perchen

characteristic: collector name

text: house mouse

characteristic: common name

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: centuries

characteristic: host age

text: Balb/C mice

characteristic: host common name

text: healthy

characteristic: host health state

text: Mus musculus

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: Individual

characteristic: isolate

text: Mus musculus

characteristic: organism

characteristic: receipt date

text: Mus musculus

text: DNA extracted fromcecal content in ZT0


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SOUTHERN MEDICAL UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Southern Medical University

text: Perchen

text: house mouse

text: China

text: Balb/C mice

text: healthy

text: Mus musculus

text: male

text: Individual

text: Mus musculus

text: Mus musculus

text: DNA extracted fromcecal content in ZT12

characteristic: title


text: EMBL - AUSTRALIA

text: public

text: Cryptolestes ferrugineus

text: Cryptolestes ferrugineus

text: Cryptolestes ferrugineus adults from the F4 generation of a cross between susceptible (CF31) and weak resistant (CF37) strains.


text: OX

text: public

characteristic: broker name

characteristic: description

text: Neisseria meningitidis

text: Neisseria meningitidis


text: SSI

text: public

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Danish outbreak strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MAASTRICHT UNIVERSITY

text: public

tag: Namespace:MAASTRICHT UNIVERSITY

text: human

characteristic: common name

text: HepG2 baseline samples from HULAFE

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: HepG2 Baseline samples


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAASTRICHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: HepG2 BAC baseline samples from Leiden

text: Homo sapiens

text: Homo sapiens

text: HepG2_BAC Baseline samples


text: MAASTRICHT UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: HepG2 wt baseline samples from Leiden

text: Homo sapiens

text: Homo sapiens

text: HepG2_wt Baseline samples


text: Dolomedes plantarius

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Dolomedes plantarius

text: Dolomedes plantarius

text: Dolomedes plantarius

characteristic: subject id

text: Fen Raft Spider

characteristic: title


text: Sciurus vulgaris

text: SC

text: public

text: Eurasian red squirrel

text: Sciurus vulgaris

text: Sciurus vulgaris

text: Red Squirrel


text: GSC

text: public

text: Leptosphaeria biglobosa 'brassicae' group


text: GSC

text: public

text: blackleg of rapeseed fungus

text: Leptosphaeria maculans

text: Leptosphaeria maculans


text: GSC

text: public

text: Leptosphaeria maculans 'brassicae' group


text: public

tag: Namespace:Laboratory of traslational research. AUSL-IRCCS Reggio Emilia

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: Cell samples were collected 96 hours after transfection by trypsinization. TPC1 cells were cultured at 37째C in 5% CO2 in DMEM medium supplemented with 10% FBS Transient transfection of DEC1 or control siRNA was performed using Lipofectamine RNAi MAX at 30 nM concentration Total RNA was extracted from cell pellets using Maxwell RSC Simply RNA Cells kit (Promega) RNA-Seq libraries were prepared starting from 1 ug of total RNA, using TRUSEQ stranded RNA LT kit (Illumina)

characteristic: description

text: papillary thyroid carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: thyroid gland

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Laboratory of traslational research. AUSL-IRCCS Reggio Emilia

text: public

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: papillary thyroid carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: thyroid gland

text: Homo sapiens


text: Plasmodium falciparum

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Postdoctoral Researcher

text: public

characteristic: SRA accession

tag: Namespace:Postdoctoral Researcher

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: H. seropedicae SmR1 (wild type), Fnr1-3xFlag (fnr1::[Leu-Glu]-3XFlag) and Fnr3-3xFlag (fnr3::[Leu-Glu]-3XFlag) were grown as described in the growth protocol. Immediately after the oxygen switch, cells were cross linked with 1% (vol/vol) formaldehyde (Sigma#F8775) for 25 min. Cross linking was quenched by incubating cells on ice for 5 minutes with 125 mM of Glycine. Cells were collected by centrifugation and washed twice in 20 mL of PBS buffer pH 7.4 (Sigma#P4417). The washed pellets were then resuspended in 1.0 mL of IP lysis buffer (10mMTris-Cl, pH 8.0, 50 Mm NaCl), containing protease cocktail inhibitor (Roche#11836170001). Cell lysis and combined DNA shearing were performed by sonication. Herbaspirillum seropedicae strains were grown at 30°C in NFbHP-Malate medium supplemented with 20 mM of NH4Cl upon switch from 350 rpm to 120 rpm (low oxygen) After cell lysis and DNA shearing, the obtained lysate was clarified by centrifugation at 4°C, 17000 x g for 5 min and 25 μL of the supernatant combined with 75 μL of TE buffer (10 mM Tris-Cl, pH 7.4, 1 mM EDTA), was treated with 1 μL of RNase (Sigma#R4642) and extracted once with phenol:chlorofrom:isoamyl alcohol (25:24:1) followed by chloroform extraction. Verification of DNA shearing was confirmed by loading 10 μL of purified DNA onto a 1% agarose gel. Fragments ranged from 100 to 500 bp, centered on 300 bp. Subsequently, 525 μL of IP Buffer (50 mM Tris-Cl, pH 8.0, 250 Mm NaCl, 0.8% [vol/vol] Triton X-100), containing protease cocktail inhibitor, was added, to the remainder of the lysate (975 μL) and samples were chilled on ice. 50 μL of each lysate was set aside for total-DNA extraction. The remaining lysates were added to 45 μL of EZview Red ANTI-FLAG M2 affinity gel (Sigma#F2426) prepared and washed with TBS buffer (Sigma#T5030) as described in the manufacturer’s instructions. The cross-linked lysates were immuno precipitated by incubation for 20 hours on a rotating wheel at 4°C. The samples were then centrifuged for 1 min at 4°C at 4,500 X g, and the pellets were washed once with 1.5 mL of IP Buffer and then three times more with 1 mL of IP buffer. After washing, the affinity gel pellets and 50 μL of total cell extracts (set aside earlier) were incubated overnight at 65°C in 100 μL of IP elution buffer (50mMTris-Cl, pH 7.6, 10mMEDTA, 1% SDS). Samples were then centrifuged at 16,000Xg for 5 min to remove the affinity gel. The eluted DNA was transferred to a new tube and the affinity gel was re-extracted with 50 μL of TE buffer followed by a further 5 min incubation at 65°C. Both total DNA and IP DNA samples were adjusted to 200 μLwith TE buffer and incubated with 3 μL of 10 mg/mL of proteinase K (Roche# 03115879001) for 2 h at 55°C. The samples were extracted once with phenol : chloroform : isoamyl alcohol (25:24:1) and once with chloroform and further purified using Macherey-Nagel NucleoSpin® columns (Catalog#740609.50). DNA was eluted in 50 μL of nuclease-free H2O and quantified by using the Nanodrop (Thermo Scientific). Illumina TruSeq ChIP Library Preparation Kit was used to prepare the libraries which were then size-selected to 200 to 300 base pairs.

characteristic: genotype

text: Herbaspirillum seropedicae

text: Herbaspirillum seropedicae

text: Herbaspirillum seropedicae

characteristic: strain

characteristic: title


text: public

tag: Namespace:UNIVERSITY OF SHEFFIELD, DEPARTMENT OF ANIMAL & PL

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, Wild Type, Crown roots, Rep 1

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

text: Benzoxazinoid biosynthesis genes and root associated microbial communities

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SHEFFIELD, DEPARTMENT OF ANIMAL & PL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bacterial 16S rRNA gene sequencing, Wild Type, Primary roots, Rep 1

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


text: public

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, bx1 mutant, Crown roots, Rep 1

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Bacterial 16S rRNA gene sequencing, bx1 mutant, Primary roots, Rep 1

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, bx2 mutant, Crown roots, Rep 2

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Bacterial 16S rRNA gene sequencing, bx2 mutant, Primary roots, Rep 2

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bacterial 16S rRNA gene sequencing, bx6 mutant, Crown roots, Rep 1

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, bx6 mutant, Primary roots, Rep 1

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial 16S rRNA gene sequencing, No Plant, Soil Control, Rep 1

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Bacterial 16S rRNA gene sequencing, Wild Type, Crown roots, Rep 2

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, Wild Type, Primary roots, Rep 2

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Bacterial 16S rRNA gene sequencing, bx1 mutant, Crown roots, Rep 2

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bacterial 16S rRNA gene sequencing, bx1 mutant, Primary roots, Rep 2

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, bx2 mutant, Crown roots, Rep 3

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial 16S rRNA gene sequencing, bx2 mutant, Primary roots, Rep 3

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Bacterial 16S rRNA gene sequencing, bx6 mutant, Crown roots, Rep 2

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, bx6 mutant, Primary roots, Rep 2

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: Benzoxazinoid biosynthesis genes and root associated microbial communities

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SHEFFIELD, DEPARTMENT OF ANIMAL & PL

text: public

text: Bacterial 16S rRNA gene sequencing, No Plant, Soil Control, Rep 2

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bacterial 16S rRNA gene sequencing, Wild Type, Crown roots, Rep 3

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, Wild Type, Primary roots, Rep 3

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial 16S rRNA gene sequencing, bx1 mutant, Crown roots, Rep 3

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: ecological metagenomes

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: Bacterial 16S rRNA gene sequencing, bx1 mutant, Primary roots, Rep 3

text: United Kingdom

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ecological metagenomes

characteristic: project name

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Bacterial 16S rRNA gene sequencing, bx2 mutant, Crown roots, Rep 4

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: United Kingdom

text: metagenome

text: ecological metagenomes

characteristic: organism

text: ecological metagenomes

text: Illlumina MiSeq (250bp paired end v2)

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Bacterial 16S rRNA gene sequencing, bx2 mutant, Primary roots, Rep 4

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

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