characteristic: INSDC first public

text: public

text: Australia

text: -18.544694 +146.488108

text: Porites lutea

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - metagenomic(phenol)


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: -18.544694 +146.488108

characteristic: lat lon

text: Porites lutea

characteristic: organism

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - metagenomic(Plant)

characteristic: title

type: has member


text: public

text: Australia

text: -18.544694 +146.488108

text: Porites lutea

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - metagenomic(plant)


text: public

text: Australia

text: -18.544694 +146.488108

text: Porites lutea

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - metagenomic(ultraclean)


text: public

text: Porites lutea

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - Virome DNA


text: public

text: Australia

text: -18.544694 +146.488108

text: Porites lutea

text: Porites lutea


text: public

text: Porites lutea

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - Virome RNA


text: public

text: Porites lutea

text: Porites lutea

text: Corla virome and metagenome of Porites lutea - 16S amplicon


text: synthetic construct

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: synthetic construct

characteristic: common name

text: synthetic construct

text: synthetic construct

characteristic: subject id


Camel 1

characteristic: ENA-CHECKLIST

text: SDAU, Sardarkrushinagar

characteristic: INSDC first public

text: public

text: Camel 1

tag: Namespace:SDAU, Sardarkrushinagar

text: Camel tuberculosis

characteristic: description

text: Animal

characteristic: environment (biome)

text: Camel respiratory tract

characteristic: environment (feature)

text: Lung

characteristic: environment (material)

text: India

text: 24.2585° N

unit: DD

characteristic: geographic location (latitude)

text: 72.1907° E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Camel tuberculosis

characteristic: project name

text: metagenome

text: Ion torrent PGM

characteristic: sequencing method

text: Camel 1


Camel 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SDAU, Sardarkrushinagar

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Camel 2

characteristic: Submitter Id

characteristic: collection date

text: Camel tuberculosis

text: Animal

text: Camel respiratory tract

text: Lung

text: India

characteristic: geographic location (country and/or sea)

text: 24.2585° N

text: 72.1907° E

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: Camel tuberculosis

text: metagenome

text: Ion torrent PGM

text: Camel 2


Camel 3

characteristic: ENA-CHECKLIST

text: SDAU, Sardarkrushinagar

characteristic: INSDC first public

text: public

text: Camel 3

text: Camel tuberculosis

characteristic: description

text: Animal

characteristic: environment (biome)

text: Camel respiratory tract

characteristic: environment (feature)

text: Lung

characteristic: environment (material)

text: India

text: 24.2585° N

characteristic: geographic location (latitude)

text: 72.1907° E

text: host-associated

text: metagenome

text: metagenome

text: Camel tuberculosis

text: metagenome

text: Ion torrent PGM

text: Camel 3

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

text: public

tag: Namespace:Wellcome Trust Sanger Institute

text: ArrayExpress

characteristic: broker name

text: ES-E14 cell

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: 4C experiments were performed on mouse ESCs using two 4-cutter DNA restriction enzymes. The experiments were carried out in two technical replicates where around 10 million cells per biological sample were used. The cells were cross-linked with 1% formaldehyde for 10 minutes followed by cell lysis and nuclei isolation. The nuclei were enzymatically digested with 1μL/μg of fast digest MboI (Thermo Fisher Scientific) for 4.5 hours at 37°C. Then the material was ligated with 12 Weiss units of T4 DNA ligase (New England Biolabs) for 4.5 hours at 16°C. The ligation product was then purified using phenol-chloroform-isoamyl alcohol followed by the precipitation with ethanol. Subsequently the purified DNA was subjected to secondary digestion with 1μL/μg of Csp6I (Thermo Fisher Scientific) for 2 hours at 37°C. The digested DNA was then ligated with 12 Weiss units of T4 DNA ligase (New England Biolabs) for 4.5 hours at 16°C for obtaining circularized chimeric DNA. It was then ethanol precipitated and cleaned using NucleoSpin gDNA Clean-Up (Macherey-Nagel) silica-membrane columns. The Dpf2 targeting vector was linearized and electroporated into R26::CreERT2 E14 cells to generate heterozygous ES cell lines after G418 selection. The selected heterozygous ES lines were transiently transfected with a FLP recombinase encoding plasmid (pCAGGsFlpE), converting the initial knockout allele (Dpf2+/-, lacZ positive, G418 resistant) into a “wild-type” (WT) allele with two floxP sites flanking exon 4 (Dpf2+/+, reverted WT (rWT), lacZ negative, G418 sensitive). Multiple independent rWT ES clones were then electroporated with the original Dpf2 knockout vector or Dpf2 critical exon-deleted targeting vector and selected with G418. Dpf2 critical-exon-deleted vector was generated by transforming Dpf2 targeting vector into the cre-containing bacteria. In the second round targeting, the clones recovered were only those with the second WT allele being targeted, which were confirmed by the presence of both the rWT allele and the second knockout allele. The long-range PCR reactions were carried out for genotyping (SequalPrep Long PCR kit, Invitrogen). The selected heterogeneous ES cell lines were converted to the conditional Dpf2+/+ and Dpf2+/- clones by transiently transfected with FlpE. Ethanol precipitated and NucleoSpin gDNA Clean-Up (Macherey-Nagel) silica-membrane columns. KAPA HTP Library Preparation kit

text: normal

characteristic: disease

text: Dfp2 flox/flox

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: ES-E14 cell

text: embryonic stem cell

text: house mouse

text: Protocols: 4C experiments were performed on mouse ESCs using two 4-cutter DNA restriction enzymes. The experiments were carried out in two technical replicates where around 10 million cells per biological sample were used. The cells were cross-linked with 1% formaldehyde for 10 minutes followed by cell lysis and nuclei isolation. The nuclei were enzymatically digested with 1μL/μg of fast digest MboI (Thermo Fisher Scientific) for 4.5 hours at 37°C. Then the material was ligated with 12 Weiss units of T4 DNA ligase (New England Biolabs) for 4.5 hours at 16°C. The ligation product was then purified using phenol-chloroform-isoamyl alcohol followed by the precipitation with ethanol. Subsequently the purified DNA was subjected to secondary digestion with 1μL/μg of Csp6I (Thermo Fisher Scientific) for 2 hours at 37°C. The digested DNA was then ligated with 12 Weiss units of T4 DNA ligase (New England Biolabs) for 4.5 hours at 16°C for obtaining circularized chimeric DNA. It was then ethanol precipitated and cleaned using NucleoSpin gDNA Clean-Up (Macherey-Nagel) silica-membrane columns. Ethanol precipitated and NucleoSpin gDNA Clean-Up (Macherey-Nagel) silica-membrane columns. KAPA HTP Library Preparation kit

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inner cell mass

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: URMITE

text: public

text: maxillary sinus

characteristic: isolation source

text: Mycobacterium setense

text: Mycobacterium setense

characteristic: strain

text: Complete Genome Sequence of Mycobacterium setense CSUR47

characteristic: title


E-MTAB-6162:Sample 1

characteristic: External Id

text: public

text: E-MTAB-6162:Sample 1

tag: Namespace:School of Biomedical Engineering, Shanghai Jiao Tong University

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: female germ line stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: FGSC at passage number 35-45 was derived from C57BL/6 wild-type neonatal mice as previously described (Kang Z, et al. Nat Cell Biol. 2009), and it was cultured on gelatinized plates with minimum essential medium (MEM)-α (Gibco) containing 10% fetal bovine serum (Gibco), 1mM non-essential amino acids (Gibco) , 1mM sodium pyruvate (Gibco), 2mM L-glutamine (Gibco), 0.1mM β-mercaptoethanol (Sigma-Aldrich), 10ng/ml mouse epidermal growth factor (Pepreotech), 20ng/ml mouse leukemia inhibitory factor (Pepreotech), 10ng/ml human glial cell line-derived neurotrophic factor (Pepreotech), 10ng/ml human basic fibroblast growth factor (Pepreotech), and 100units/ml Penicillin-Streptomycin Solution at 37 °C in a 5 % CO2 atmosphere as previously described (Kang Z, et al. Nat Cell Biol. 2009). Genome editing and knockout of Stat3 was performed using CRISPR/Cas9 system. Specific Stat3 gRNA Sequences (5’- GCAGGAATCGGCTATATTGC -3’) were predicted by the algorithm as described previously, and the gRNA oligo were cloned in PX459 vector. Total RNA of FGSC or ESC was extracted using TRIzol regent (Invitrogen) and resuspend in RNase free water. And 1ug total RNA was used to perform reverse transcription with Oligo-dT and random primer using SuperScript III reverse transcriptase(Invitrogen) Total RNA was extracted using Trizol (Ambion Life Technologies) according to the Ambion standard RNA isolation procedure. Poly A+ RNA was purified using the NEBNext Poly (A) mRNA Magnetic Isolation Module (E7490, NEB). Then the mRNA library was constructed with a NEBNext Ultr Directional RNA Library Prep Kit for Illumina (E7420, NEB).

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: female gonad

text: Mus musculus

text: female

characteristic: sex

text: Sample 1


E-MTAB-6162:Sample 2

characteristic: ENA-CHECKLIST

text: School of Biomedical Engineering, Shanghai Jiao Tong University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6162:Sample 2

text: ArrayExpress

text: female germ line stem cell

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: female gonad

characteristic: organism part

text: Mus musculus

text: female

text: Sample 2


E-MTAB-6162:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6162:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: female germ line stem cell

text: house mouse

text: Protocols: FGSC at passage number 35-45 was derived from C57BL/6 wild-type neonatal mice as previously described (Kang Z, et al. Nat Cell Biol. 2009), and it was cultured on gelatinized plates with minimum essential medium (MEM)-α (Gibco) containing 10% fetal bovine serum (Gibco), 1mM non-essential amino acids (Gibco) , 1mM sodium pyruvate (Gibco), 2mM L-glutamine (Gibco), 0.1mM β-mercaptoethanol (Sigma-Aldrich), 10ng/ml mouse epidermal growth factor (Pepreotech), 20ng/ml mouse leukemia inhibitory factor (Pepreotech), 10ng/ml human glial cell line-derived neurotrophic factor (Pepreotech), 10ng/ml human basic fibroblast growth factor (Pepreotech), and 100units/ml Penicillin-Streptomycin Solution at 37 °C in a 5 % CO2 atmosphere as previously described (Kang Z, et al. Nat Cell Biol. 2009). Total RNA of FGSC or ESC was extracted using TRIzol regent (Invitrogen) and resuspend in RNase free water. And 1ug total RNA was used to perform reverse transcription with Oligo-dT and random primer using SuperScript III reverse transcriptase(Invitrogen) Total RNA was extracted using Trizol (Ambion Life Technologies) according to the Ambion standard RNA isolation procedure. Poly A+ RNA was purified using the NEBNext Poly (A) mRNA Magnetic Isolation Module (E7490, NEB). Then the mRNA library was constructed with a NEBNext Ultr Directional RNA Library Prep Kit for Illumina (E7420, NEB).

text: normal

text: CRISPR/Cas9 induced STAT3 knock out

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female gonad

text: Mus musculus

text: female

text: Sample 3


E-MTAB-6162:Sample 4

characteristic: External Id

text: public

text: E-MTAB-6162:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: female germ line stem cell

characteristic: cell type

text: house mouse

text: normal

text: CRISPR/Cas9 induced STAT3 knock out

text: Mus musculus

text: Mus musculus

text: female gonad

text: Mus musculus

text: female

characteristic: strain

text: Sample 4

characteristic: title


E-MTAB-6201:Sample 1

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 1

tag: Namespace:ETH Zurich

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

characteristic: common name

text: Protocols: The experimental trial has been previously described (Fürst et al. 2012, Flöter et al, under review). In brief, estrous cycle synchronized German Landrace sows (n=4-6/treatment) were inseminated with sperm of the same single Pietrain boar. Starting from insemination until Day 10, sows were fed with different doses of estradiol-17β (E2; 1, 3, 5(10)-ESTRATRIEN-3, 17β-DIOL, Steraloids, Newport, USA), namely with 10 and 1000 µg E2/kg body weight (bw) twice daily, respectively, or with ethanol carrier only (control group). The E2 concentrations were selected according to reference values for humans (JECFA 2010) and have been reported earlier (Fürst et al. 2012). The low dose corresponds to the ‘no observed effect level’ (NOEL). One hour after ingestion of the last dosing, sows were slaughtered on day 10 of pregnancy. The uterus was removed and embryos were flushed from the uterus using 10 ml phosphate-buffered saline (PBS, autoclaved, pH 7.4) per horn. All embryos were transferred into a Petri-dish containing PBS, washed twice and then single embryos were snap-frozen in liquid nitrogen and stored at -80 °C. Animals were only included in the RNA sequencing (RNA-Seq) analysis if embryos were at the hatched blastocyst stage. Experiments with sows were performed in accordance with the International Guiding Principles for Biomedical Research Involving Animals, as proposed by the Society for the Study of Reproduction, with the European Convention on Animal Experimentation and with the German Animal Welfare Act. In brief, estrous cycle synchronized German Landrace sows (n=4-6/treatment) were inseminated with sperm of the same single Pietrain boar. Starting from insemination until Day 10, sows were fed with different doses of estradiol-17β (E2; 1, 3, 5(10)-ESTRATRIEN-3, 17β-DIOL, Steraloids, Newport, USA), namely with 10 and 1000 µg E2/kg body weight (bw) twice daily, respectively, or with ethanol carrier only (control group) Total RNA and DNA from single embryos were extracted as reported recently (Flöter et al, under review) using the AllPrep RNA/DNA Micro Kit (Qiagen, Hilden, Germany) following the manufacturers protocol for cells with slight modifications. In brief, 700 µl of Buffer RLT Plus supplemented with 1% β-mercaptoethanol was added to the frozen embryos. Disruption was achieved by pipetting up and down and by a single brief vortexing. Homogenization was performed using a syringe and needle (20 G). After centrifugation of the lysate using a DNA spin column, the column was stored at 4 °C, while the flow-through was processed following the protocol for “purification of total RNA containing small RNAs from cells”. In order to improve RNA purity, the column was incubated with Buffer RPE at step D3 and D4 before centrifugation for 4 min and 2 min, respectively. RNA elution was repeated using the first eluate to increase the final concentration. The DNA was purified subsequently. Samples were immediately put on ice. RNA and DNA samples were stored at -80°C and -20°C, respectively. Purity and quantity was assessed spectrophotometrically using the NanoDrop 1000 (peqLab, Erlangen, Germany). Additionally, RNA quantity of embryos was determined using the Qubit (Invitrogen) with the Qubit™ RNA BR Assay. RNA integrity was measured by means of the Bioanalyzer 2100 (Agilent Technologies, Waldbronn, Germany) with the RNA 6000 Nano Kit (Agilent). The mean RNA Integrity Number (RIN) of the embryo samples was 9.7 ± 0.3 (± SD) NEBNext® Small RNA libraries were prepared starting from 50-100 ng total RNA from individual embryos (n=6 per group, 6 groups in total)

characteristic: description

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

characteristic: sex

text: Sample 1


E-MTAB-6201:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 10

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: female

text: Sample 10


E-MTAB-6201:Sample 11

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 11

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

characteristic: cell type

text: pig

text: embryo

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 11


E-MTAB-6201:Sample 12

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 12

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 12

characteristic: title


E-MTAB-6201:Sample 13

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 13

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

characteristic: sex

text: Sample 13


E-MTAB-6201:Sample 14

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 14

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: female

text: Sample 14


E-MTAB-6201:Sample 15

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 15

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

characteristic: cell type

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 15


E-MTAB-6201:Sample 16

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 16

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 16


E-MTAB-6201:Sample 17

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 17

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 17

characteristic: title


E-MTAB-6201:Sample 18

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 18

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

characteristic: sex

text: Sample 18


E-MTAB-6201:Sample 19

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 19

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: male

text: Sample 19


E-MTAB-6201:Sample 2

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 2

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

characteristic: cell type

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 2


E-MTAB-6201:Sample 20

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 20

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 20


E-MTAB-6201:Sample 21

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 21

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 21

characteristic: title


E-MTAB-6201:Sample 22

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 22

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

characteristic: sex

text: Sample 22


E-MTAB-6201:Sample 23

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 23

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: male

text: Sample 23


E-MTAB-6201:Sample 24

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 24

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

characteristic: cell type

text: pig

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 24


E-MTAB-6201:Sample 25

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 25

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 25


E-MTAB-6201:Sample 26

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 26

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 26

characteristic: title


E-MTAB-6201:Sample 27

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 27

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

characteristic: sex

text: Sample 27


E-MTAB-6201:Sample 28

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 28

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

characteristic: cell type

text: pig

characteristic: common name

characteristic: description

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: male

text: Sample 28


E-MTAB-6201:Sample 29

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 29

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 29


E-MTAB-6201:Sample 3

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 3

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 3


E-MTAB-6201:Sample 30

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 30

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 30

characteristic: title


E-MTAB-6201:Sample 31

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 31

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

characteristic: cell type

text: pig

characteristic: common name

characteristic: description

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

characteristic: sex

text: Sample 31


E-MTAB-6201:Sample 32

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 32

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: male

text: Sample 32


E-MTAB-6201:Sample 33

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 33

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 33


E-MTAB-6201:Sample 34

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 34

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 34


E-MTAB-6201:Sample 35

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 35

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

characteristic: cell type

text: pig

characteristic: common name

characteristic: description

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

text: Sample 35

characteristic: title


E-MTAB-6201:Sample 36

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 36

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: male

characteristic: sex

text: Sample 36


E-MTAB-6201:Sample 4

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 4

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: female

text: Sample 4


E-MTAB-6201:Sample 5

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 5

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 5


E-MTAB-6201:Sample 6

characteristic: ENA-FIRST-PUBLIC

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 6

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

characteristic: cell type

text: pig

characteristic: common name

characteristic: description

text: embryo

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 6


E-MTAB-6201:Sample 7

characteristic: ENA-LAST-UPDATE

text: ETH Zurich

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6201:Sample 7

text: German Landrace x Pietrain

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

text: Sample 7

characteristic: title


E-MTAB-6201:Sample 8

characteristic: External Id

text: ETH Zurich

text: public

text: E-MTAB-6201:Sample 8

characteristic: Submitter Id

characteristic: age

text: German Landrace x Pietrain

text: ArrayExpress

characteristic: broker name

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

text: Sus scrofa

text: female

characteristic: sex

text: Sample 8


E-MTAB-6201:Sample 9

characteristic: ENA-CHECKLIST

text: ETH Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6201:Sample 9

text: German Landrace x Pietrain

characteristic: breed

text: ArrayExpress

text: early embryonic cell

text: pig

text: embryo

text: Sus scrofa

text: Sus scrofa

text: blastocyst

characteristic: organism part

text: Sus scrofa

text: female

text: Sample 9


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: subject id


E-MTAB-6163:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6163:Sample 1

text: ArrayExpress

text: Female germline stem cell line

characteristic: cell line

text: house mouse

text: Protocols: FGSCs at passage number 35-45 were cultured on gelatinized plates with minimum essential medium (MEM)-α (Gibco) containing 10% fetal bovine serum (Gibco), 1mM non-essential amino acids (Gibco) , 1mM sodium pyruvate (Gibco), 2mM L-glutamine (Gibco), 0.1mM β-mercaptoethanol (Sigma-Aldrich), 10ng/ml mouse epidermal growth factor (Pepreotech), 20ng/ml mouse leukemia inhibitory factor (Pepreotech), 10ng/ml human glial cell line-derived neurotrophic factor (Pepreotech), 10ng/ml human basic fibroblast growth factor (Pepreotech), and 100units/ml Penicillin-Streptomycin Solution at 37 °C in a 5 % CO2 atmosphere as previously described (Kang Z, et al. Nat Cell Biol. 2009). cells were covalently cross-linked by incubating cells in 1 % formaldehyde (Sigma-Aldrich) for 10 minutes at room temperature and incubated with 125 mM glycine for 5 minutes to quench cross-linking reaction. The fragmented chromatin fragments were immunoprecipitated with Protein A+G Magnetic beads (Millipore) coupled with anti-STAT3 antibody (13-7000, Invitrogen). After reverse crosslinking, ChIP and input DNA library were constructed with a NEBNext Ultra II DNA Library Prep Kit for Illumina (E7645, NEB).

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: female gonad

text: Mus musculus

text: female

characteristic: strain

text: Sample 1


E-MTAB-6163:Sample 2

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6163:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Female germline stem cell line

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: female gonad

text: Mus musculus

text: female

characteristic: sex

text: Sample 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WAGENINGEN UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: Branta sandvicensis

text: Branta sandvicensis

text: Male

text: Hawaiian Goose


text: WAGENINGEN UNIVERSITY

text: public

characteristic: INSDC status

text: Branta bernicla

text: Branta bernicla

text: Male

text: Dark-bellied Brent Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Branta bernicla hrota

text: Branta bernicla hrota

text: Female

text: Pale-bellied Brent Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Branta bernicla nigricans

text: Branta bernicla nigricans

text: Male

text: Black Brent Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Canada goose

characteristic: common name

text: Branta canadensis

text: Branta canadensis

text: Canada Goose


text: WAGENINGEN UNIVERSITY

text: public

text: cackling goose

text: Branta hutchinsii

characteristic: organism

text: Branta hutchinsii

text: Cackling Goose


text: WAGENINGEN UNIVERSITY

text: public

text: barnacle goose

text: Branta leucopsis

text: Branta leucopsis

text: Barnacle Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Branta ruficollis

text: Branta ruficollis

text: Female

text: Red-breasted Goose


text: WAGENINGEN UNIVERSITY

text: public

text: snow goose

text: Anser caerulescens

text: Anser caerulescens

text: Female

text: Snow Goose


text: WAGENINGEN UNIVERSITY

text: public

text: snow goose

text: Anser caerulescens

text: Anser caerulescens

text: Male

text: Snow Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Anser canagica

text: Anser canagica

text: Emperor Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Ross' goose

text: Anser rossii

text: Anser rossii

text: Male

text: Ross' Goose


text: WAGENINGEN UNIVERSITY

text: public

text: Anser cygnoides

text: Anser cygnoides

text: Female

text: Swan Goose


text: WAGENINGEN UNIVERSITY

text: public

text: lesser white-fronted goose

text: Anser erythropus

text: Anser erythropus

text: Lesser White-fronted Goose


text: WAGENINGEN UNIVERSITY

text: public

text: white-fronted goose

text: Anser albifrons

text: Anser albifrons

text: Greater White-fronted Goose


text: WAGENINGEN UNIVERSITY

text: public

text: domestic goose

text: Anser anser

text: Anser anser

text: Greylag Goose


text: WAGENINGEN UNIVERSITY

text: public

text: pink-footed goose

text: Anser brachyrhynchus

text: Anser brachyrhynchus

text: Pink-footed Goose


text: WAGENINGEN UNIVERSITY

text: public

text: bean goose

text: Anser fabalis

text: Anser fabalis

text: Taiga Bean Goose


text: WAGENINGEN UNIVERSITY

text: public

text: bar-headed goose

text: Anser indicus

text: Anser indicus

text: Bar-headed Goose


text: WAGENINGEN UNIVERSITY

text: public

text: bean goose

text: Anser fabalis

text: Anser fabalis

text: Tundra Bean Goose


text: public

tag: Namespace:Instituto de Investigacion en Biomedicina de Buenos Aires

text: human

text: Homo sapiens

text: Homo sapiens


text: ANAND

text: public

characteristic: collection date

text: chicken

text: Ceacum microbiome

characteristic: description

text: chicken gut

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: cecal content

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Gallus gallus

text: DBT-BBSRC

characteristic: project name

text: Gallus gallus

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BONN, GERMANY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BONN, GERMANY

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: title


text: public

characteristic: INSDC status

tag: Namespace:Nord University, Faculty of Biosciencens and Aquaculture

characteristic: collection date

text: Atlantic cod

characteristic: common name

text: T74, NA (North East Arctic cod)

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: The Barents Sea

characteristic: geographic location (region and locality)

text: mitochondrion

characteristic: organelle

text: Gadus morhua

characteristic: organism

text: Gadus morhua

text: muscle

characteristic: tissue type

text: Gadus morhua mitochondrial complete genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Nord University, Faculty of Biosciencens and Aquaculture

text: public

text: Atlantic cod

text: T78, NA (North East Arctic cod)

text: Norway

text: The Barents Sea

text: mitochondrion

text: Gadus morhua

text: Gadus morhua

text: muscle


characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF TROMSO

text: uncultured eukaryote

text: January Ice

text: marine

characteristic: environment (biome)

text: coastal

characteristic: environment (feature)

text: sea ice

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: pcr primers

text: Kovacs ice core

characteristic: sample collection device or method

text: uncultured eukaryote

characteristic: size fraction upper threshold

characteristic: target gene

characteristic: target subfragment

text: Seasonal dynamics of eukaryotic microbes in Alaskan sea ice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: January Sediment

characteristic: description

text: marine

text: coastal

text: sediment

text: Yes

text: USA

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

text: Ponar grab

text: uncultured eukaryote

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

text: March Ice

text: marine

characteristic: environment (biome)

text: coastal

characteristic: environment (feature)

text: sea ice

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: pcr primers

text: Kovacs ice core

text: uncultured eukaryote


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: March Sediment

text: marine

text: coastal

text: sediment

text: Yes

text: USA

text: uncultured eukaryote

text: Ponar grab

characteristic: sample collection device or method

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

text: April Ice

characteristic: description

text: marine

characteristic: environment (biome)

text: coastal

characteristic: environment (feature)

text: sea ice

characteristic: environment (material)

text: Yes

text: USA

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

text: Kovacs ice core

text: uncultured eukaryote

characteristic: size fraction upper threshold

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured eukaryote

text: April Sediment

text: marine

text: coastal

text: sediment

text: Yes

characteristic: environmental sample

characteristic: further details

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: pcr primers

text: Ponar grab

text: uncultured eukaryote


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

characteristic: common name

text: May Ice

characteristic: description

text: marine

characteristic: environment (biome)

text: coastal

characteristic: environment (feature)

text: sea ice

characteristic: environment (material)

text: Yes

text: USA

text: uncultured eukaryote

text: Kovacs ice core

characteristic: sample collection device or method

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured eukaryote

text: May Sediment

text: marine

text: coastal

text: sediment

text: Yes

characteristic: environmental sample

text: USA

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

text: Ponar grab

text: uncultured eukaryote

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

characteristic: common name

text: June Ice

characteristic: description

text: marine

characteristic: environment (biome)

text: coastal

text: sea ice

text: Yes

characteristic: further details

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: pcr primers

text: Kovacs ice core

text: uncultured eukaryote

characteristic: size fraction upper threshold


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured eukaryote

text: June Sediment

text: marine

text: coastal

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Yes

text: USA

text: uncultured eukaryote

text: Ponar grab

characteristic: sample collection device or method

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TROMSO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

characteristic: common name

text: August Water

characteristic: description

text: marine

characteristic: environment (biome)

text: coastal

text: seawater

text: Yes

characteristic: environmental sample

characteristic: further details

text: USA

characteristic: geographic location (country and/or sea)

text: uncultured eukaryote

characteristic: organism

text: Kemmerer water sampler

text: uncultured eukaryote

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TROMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured eukaryote

text: August Sediment

text: marine

text: coastal

characteristic: environment (feature)

text: sediment

text: Yes

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: pcr primers

text: Ponar grab

text: uncultured eukaryote


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IATA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: oral

characteristic: description

text: oral

characteristic: environment (biome)

text: oral cavity

text: buccal cells

characteristic: environment (material)

text: Spain

text: human-oral

characteristic: human oral environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Taste

characteristic: project name

text: swab

characteristic: sample collection device or method

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Oral


text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: subject id

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: chicken

characteristic: common name

text: Ceacum microbiome

characteristic: description

text: chicken gut

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: cecal content

text: host-associated

characteristic: environmental package

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Gallus gallus

text: DBT-BBSRC

text: Gallus gallus

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Center for Genomic Epidemiology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Center for Genomic Epidemiology

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

text: No

characteristic: environmental sample

text: Germany

text: not provided

characteristic: host health state

text: Sus

characteristic: host scientific name

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EURL


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Genomic Epidemiology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: DTU

characteristic: collection date

text: No

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: No

text: Escherichia coli

text: Escherichia coli

text: EURL

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Center for Genomic Epidemiology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: France

characteristic: geographic location (longitude)

text: not provided

text: Sus

text: No

text: Escherichia coli

text: Escherichia coli

text: EURL


text: Centre for Genomic Regulation

text: public

tag: Namespace:Centre for Genomic Regulation

text: ArrayExpress

characteristic: broker name

text: Protocols: After growing each Mycoplasma for 6h at 37°C, cells were washed twice with PBS and lysed with 700 µl of Qiazol buffer. Then, samples were lysed with 700 µl of Qiazol buffer. RNA extractions were performed by using the miRNeasy mini Kit (Qiagen) following the instructions of the manufacturer. Libraries for RNA-seq were prepared following directional RNA-seq library preparation and sequencing. Briefly, 1 µg of total RNA was fragmented to ~100-150 nt using NEB Next Magnesium RNA Fragmentation Module (ref. E6150S, NEB). Treatments with Antarctic phosphatase (ref. M0289S, NEB) and PNK (ref. M0201S, NEB) were performed in order to make the 5’ and 3’ ends of the RNA available for adapter ligation.

characteristic: description

text: wild type genotype

characteristic: genotype

text: 6 hours growth at 37 degree celsius

characteristic: growth condition

text: Mycoplasma capricolum subsp. capricolum ATCC 27343


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Genomic Regulation

characteristic: INSDC center name

text: public

text: ArrayExpress

text: wild type genotype

text: 6 hours growth at 37 degree celsius

text: Mycoplasma genitalium G37

characteristic: organism

text: Mycoplasma genitalium G37

text: Mycoplasma genitalium G37


text: Centre for Genomic Regulation

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild type genotype

text: 6 hours growth at 37 degree celsius

text: Mycoplasma gallisepticum str. R(high)

text: Mycoplasma gallisepticum str. R(high)

text: Mycoplasma gallisepticum str. R(high)


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: wild type genotype

text: 6 hours growth at 37 degree celsius

text: Mycoplasma hyopneumoniae 168

text: Mycoplasma hyopneumoniae 168

text: Mycoplasma hyopneumoniae 168

characteristic: title


characteristic: ENA-CHECKLIST

text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: wild type genotype

text: 6 hours growth at 37 degree celsius

text: Mycoplasma mycoides subsp. capri LC str. 95010


characteristic: ENA-FIRST-PUBLIC

text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: wild type genotype

text: 6 hours growth at 37 degree celsius

text: Mycoplasma pneumoniae M129

text: Mycoplasma pneumoniae M129

text: Mycoplasma pneumoniae M129


text: University Hospital Heidelberg

characteristic: INSDC last update

text: public

text: ArrayExpress

text: cardiac muscle cell

characteristic: cell type

text: Norway rat

characteristic: common name

text: Protocols: Neonatal rat hearts (P1) get extracted from the neonates and the left ventricle of each animal is further processed. They get digested in a pancreatin solution at 37°C. Every 15min the supernated is removed and the cells are pelleted at 1000rpm. The reaction is stopped by addition of full culture medium. All the cells are finally collected and myocytes are selected by a percoll gradient. Cells are plated in petri dishes at 10 million cells per plate. The cells are lysed with the following buffers: Buffer1: 50mM Hepes‐KOH pH7.5, 140 mM NaCl, 1mM EDTA, 0.2ml 10% glycerol, 0.5% NP‐40, 0.25% Triton, X‐100 Buffer2: 200mM NaCl, 1mM EDTA (pH 8), 0.5mM EGTA (pH 8), 10mM Tris (pH 8) Buffer3: 50mM Tris (pH 8), 0,1% SDS, 0,95 % NP40, 0,1% Na-deoxycholate, 10mM EDTA, 150mM NaCl The chromatin is fragmented via bioruptor sanitation (Diagnode) Libraries are prepared according to the manufacture's protocol (NEBNext® ChIP-Seq Library Prep Master Mix Set for Illumina)

text: neonate

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

characteristic: organism part

text: Rattus norvegicus

text: mixed

characteristic: sex

text: Wistar

characteristic: strain


text: PORTO CONTE RICERCHE SRL

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:PORTO CONTE RICERCHE SRL

characteristic: Submitter Id

characteristic: collection date

text: Ecological community

characteristic: environment (biome)

text: gastrointestinal tracts

characteristic: environment (feature)

text: mucosal and luminal contents

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenomes

text: GTGCCAGCMGCCGCGGTAA; GGACTACHVGGGTWTCTAAT

characteristic: pcr primers

text: metagenomes

characteristic: target gene

characteristic: target subfragment

text: Multi-omic biogeography of the gastrointestinal microbiota of a pre-weaned lamb


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE

text: Italy

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica subsp. enterica serovar Napoli

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: serovar

characteristic: title


text: ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

text: Canis lupus familiaris

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Italy

text: not provided

text: Homo sapiens

text: Other

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Italy

text: not provided

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: INSDC last update

text: public

text: Italy

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human feces

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

text: Italy

text: not provided

characteristic: isolate

text: Environment

characteristic: isolation source

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

characteristic: INSDC status

text: Italy

text: not provided

text: Homo sapiens

text: Human urine

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: serovar

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Italy

text: not provided

text: Homo sapiens

text: Human blood

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

text: Water

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Italy

text: not provided

text: Sus scrofa

text: Animal organs

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Italy

text: not provided

characteristic: host health state

text: Other

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

text: Italy

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: isolate

text: Animal feces

characteristic: isolation source

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

characteristic: INSDC status

text: Italy

text: not provided

text: Food

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: serovar


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Italy

text: not provided

text: Buteo

text: Animal organs

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: Italy

text: not provided

text: Sus scrofa

text: Animal feces

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

text: Vulpes�

text: Animal organs

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Italy

text: not provided

text: Sus scrofa

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

text: Italy

text: not provided

characteristic: host health state

text: Venerupis

characteristic: host scientific name

characteristic: isolate

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

characteristic: INSDC status

text: Italy

text: not provided

text: Gallus gallus

text: Animal

characteristic: isolation source

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Italy

text: not provided

text: Bos

text: Animal feces

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Italy

text: not provided

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Italy

text: not provided

text: Felis catus

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Italy

characteristic: geographic location (country and/or sea)

text: not provided

text: Felis catus

text: Animal feces

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: INSDC last update

text: public

text: Italy

text: not provided

characteristic: host health state

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

characteristic: INSDC status

text: Italy

text: not provided

text: Venerupis

characteristic: host scientific name

characteristic: isolate

text: Food

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli


text: public

characteristic: SRA accession

text: Italy

text: not provided

text: Gallus gallus

text: Laboratory

characteristic: isolation source

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Napoli


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: Italy

text: not provided

text: Ovis�

text: Laboratory

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Napoli

characteristic: serovar


E-MTAB-6204:dKD1 rep1 cytRNA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6204:dKD1 rep1 cytRNA

tag: Namespace:Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square, London, WC1N 3BG, UK

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: HeLa cells were grown in antibiotic free medium, and siRNAs delivered with Lipofectamin RNAiMax. Cells were collected 72 hours post transfection. DMEM with 10% FBS at 37°C with 5% CO2 injection. Cells were fractionated into nuclear and cytoplasmic fractions with appropriate detergent conditions, and RNA was isolated with Trizol and RNA isolation columns from Zymogen. RNA was depleted of rRNA using the RiboZero kit (Epicentre) and converted to DNA libraries with the TruSeq stranded RNAseq library kit (Illumina).

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: PTBP1/2 and MATR3 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: dKD1 rep1 cytRNA

characteristic: title


E-MTAB-6204:dKD1 rep1 nucRNA

characteristic: External Id

text: Department of Molecular Neuroscience, UCL Institute of Neurology, Queen Square, London, WC1N 3BG, UK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6204:dKD1 rep1 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD1 rep1 nucRNA


E-MTAB-6204:dKD1 rep2 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6204:dKD1 rep2 cytRNA

characteristic: Submitter Id

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD1 rep2 cytRNA


E-MTAB-6204:dKD1 rep2 nucRNA

text: public

text: E-MTAB-6204:dKD1 rep2 nucRNA

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD1 rep2 nucRNA


E-MTAB-6204:dKD1 rep3 cytRNA

text: public

text: E-MTAB-6204:dKD1 rep3 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: PTBP1/2 and MATR3 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: dKD1 rep3 cytRNA

characteristic: title


E-MTAB-6204:dKD1 rep3 nucRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6204:dKD1 rep3 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD1 rep3 nucRNA


E-MTAB-6204:dKD2 rep1 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6204:dKD2 rep1 cytRNA

characteristic: Submitter Id

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD2 rep1 cytRNA


E-MTAB-6204:dKD2 rep1 nucRNA

text: public

text: E-MTAB-6204:dKD2 rep1 nucRNA

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD2 rep1 nucRNA


E-MTAB-6204:dKD2 rep2 cytRNA

text: public

text: E-MTAB-6204:dKD2 rep2 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: PTBP1/2 and MATR3 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: dKD2 rep2 cytRNA


E-MTAB-6204:dKD2 rep2 nucRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6204:dKD2 rep2 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD2 rep2 nucRNA

characteristic: title


E-MTAB-6204:dKD2 rep3 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6204:dKD2 rep3 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD2 rep3 cytRNA


E-MTAB-6204:dKD2 rep3 nucRNA

text: public

text: E-MTAB-6204:dKD2 rep3 nucRNA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 and MATR3 knock down by siRNA

text: Homo sapiens

text: dKD2 rep3 nucRNA


E-MTAB-6204:siCtrl rep1cytRNA

text: public

text: E-MTAB-6204:siCtrl rep1cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

characteristic: fraction

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: scrambled siRNA

text: Homo sapiens

text: siCtrl rep1cytRNA


E-MTAB-6204:siCtrl rep2 cytRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6204:siCtrl rep2 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: scrambled siRNA

characteristic: rna interference

text: Homo sapiens

text: siCtrl rep2 cytRNA


E-MTAB-6204:siCtrl rep2 nucRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-6204:siCtrl rep2 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: scrambled siRNA

text: Homo sapiens

text: siCtrl rep2 nucRNA

characteristic: title


E-MTAB-6204:siCtrl rep3 cytRNA

text: public

characteristic: SRA accession

text: E-MTAB-6204:siCtrl rep3 cytRNA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: scrambled siRNA

text: Homo sapiens

text: siCtrl rep3 cytRNA


E-MTAB-6204:siCtrl rep3 nucRNA

text: public

text: E-MTAB-6204:siCtrl rep3 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

characteristic: common name

characteristic: description

text: adenocarcinoma

characteristic: disease

text: nuclear RNA

characteristic: fraction

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: scrambled siRNA

text: Homo sapiens

text: siCtrl rep3 nucRNA


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: scrambled siRNA

text: Homo sapiens


E-MTAB-6204:siMATR3 #1 rep1 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-6204:siMATR3 #1 rep1 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: siMATR3 #1 rep1 cytRNA


E-MTAB-6204:siMATR3 #1 rep1 nucRNA]

text: public

characteristic: SRA accession

text: E-MTAB-6204:siMATR3 #1 rep1 nucRNA]

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #1 rep1 nucRNA]

characteristic: title


E-MTAB-6204:siMATR3 #1 rep2 cytRNA

text: public

text: E-MTAB-6204:siMATR3 #1 rep2 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #1 rep2 cytRNA


E-MTAB-6204:siMATR3 #1 rep2 nucRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6204:siMATR3 #1 rep2 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #1 rep2 nucRNA


E-MTAB-6204:siMATR3 #1 rep3 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-6204:siMATR3 #1 rep3 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #1 rep3 cytRNA


E-MTAB-6204:siMATR3 #1 rep3 nucRNA

text: public

characteristic: SRA accession

text: E-MTAB-6204:siMATR3 #1 rep3 nucRNA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: siMATR3 #1 rep3 nucRNA


E-MTAB-6204:siMATR3 #2 rep1 cytRNA

text: public

text: E-MTAB-6204:siMATR3 #2 rep1 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #2 rep1 cytRNA

characteristic: title


E-MTAB-6204:siMATR3 #2 rep1 nucRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6204:siMATR3 #2 rep1 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #2 rep1 nucRNA


E-MTAB-6204:siMATR3 #2 rep2 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-6204:siMATR3 #2 rep2 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #2 rep2 cytRNA


E-MTAB-6204:siMATR3 #2 rep2 nucRNA

text: public

characteristic: SRA accession

text: E-MTAB-6204:siMATR3 #2 rep2 nucRNA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #2 rep2 nucRNA


E-MTAB-6204:siMATR3 #2 rep3 cytRNA

text: public

text: E-MTAB-6204:siMATR3 #2 rep3 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: siMATR3 #2 rep3 cytRNA


E-MTAB-6204:siMATR3 #2 rep3 nucRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6204:siMATR3 #2 rep3 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: MATR3 knock down by siRNA

text: Homo sapiens

text: siMATR3 #2 rep3 nucRNA

characteristic: title


E-MTAB-6204:siPTBP1/2 rep1 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-6204:siPTBP1/2 rep1 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 knock down by siRNA

text: Homo sapiens

text: siPTBP1/2 rep1 cytRNA


E-MTAB-6204:siPTBP1/2 rep1 nucRNA

text: public

characteristic: SRA accession

text: E-MTAB-6204:siPTBP1/2 rep1 nucRNA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 knock down by siRNA

text: Homo sapiens

text: siPTBP1/2 rep1 nucRNA


E-MTAB-6204:siPTBP1/2 rep2 cytRNA

text: public

text: E-MTAB-6204:siPTBP1/2 rep2 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adenocarcinoma

characteristic: disease

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: PTBP1/2 knock down by siRNA

text: Homo sapiens

text: siPTBP1/2 rep2 cytRNA


E-MTAB-6204:siPTBP1/2 rep2 nucRNA

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6204:siPTBP1/2 rep2 nucRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 knock down by siRNA

characteristic: rna interference

text: Homo sapiens

text: siPTBP1/2 rep2 nucRNA


E-MTAB-6204:siPTBP1/2 rep3 cytRNA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-6204:siPTBP1/2 rep3 cytRNA

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

text: adenocarcinoma

text: cytoplasmic RNA

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 knock down by siRNA

text: Homo sapiens

text: siPTBP1/2 rep3 cytRNA

characteristic: title


E-MTAB-6204:siPTBP1/2 rep3 nucRNA

text: public

characteristic: SRA accession

text: E-MTAB-6204:siPTBP1/2 rep3 nucRNA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: epithelial cell

text: human

text: adenocarcinoma

text: nuclear RNA

characteristic: fraction

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: PTBP1/2 knock down by siRNA

text: Homo sapiens

text: siPTBP1/2 rep3 nucRNA


text: California Lutheran University

text: public

text: MGRAST

characteristic: collection date

characteristic: collection time

text: B2:R1 Taxonomy ID:1218275

characteristic: description

text: Bos taurus x Bison bison

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: aqueous humour

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fillmore, CA

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bovine

characteristic: mgrast id

text: bovine metagenome

characteristic: organism

text: IBK Shotgun Metagenomics Analysis Sample B2

characteristic: project name

characteristic: sample name

text: bovine metagenome

text: illumina

characteristic: sequencing method

text: B2:R1 Taxonomy ID:1218275


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: California Lutheran University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: B2:R2 Taxonomy ID:1218275

text: Bos taurus x Bison bison

text: microbial feature

text: aqueous humour

text: host-associated

text: USA

text: Fillmore, CA

text: host-associated

text: metagenome

text: bovine

text: bovine metagenome

text: bovine metagenome

text: illumina

text: B2:R2 Taxonomy ID:1218275

characteristic: title


text: California Lutheran University

text: public

text: MGRAST

text: B3:R2 Taxonomy ID:1218275

characteristic: description

text: Bos taurus x Bison bison

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: aqueous humour

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fillmore, CA

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bovine

characteristic: mgrast id

text: bovine metagenome

characteristic: organism

text: IBK Shotgun Metagenomics Analysis Sample B3

characteristic: project name

text: bovine metagenome

text: illumina

text: B3:R2 Taxonomy ID:1218275


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: California Lutheran University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

text: B3:R1 Taxonomy ID:1218275

text: Bos taurus x Bison bison

text: microbial feature

text: aqueous humour

text: host-associated

text: USA

text: Fillmore, CA

text: host-associated

text: metagenome

text: bovine

text: bovine metagenome

characteristic: sample name

text: bovine metagenome

text: illumina

characteristic: sequencing method

text: B3:R1 Taxonomy ID:1218275


text: California Lutheran University

text: public

text: MGRAST

characteristic: collection time

text: B4:R1 Taxonomy ID:1218275

characteristic: description

text: Bos taurus x Bison bison

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: aqueous humour

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fillmore, CA

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bovine

characteristic: mgrast id

text: bovine metagenome

text: IBK Shotgun Metagenomics Analysis Sample B4

text: bovine metagenome

text: illumina

text: B4:R1 Taxonomy ID:1218275

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: California Lutheran University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

text: B4:R2 Taxonomy ID:1218275

text: Bos taurus x Bison bison

text: microbial feature

text: aqueous humour

text: host-associated

text: USA

text: Fillmore, CA

text: host-associated

text: metagenome

text: bovine

text: bovine metagenome

characteristic: organism

characteristic: project name

text: bovine metagenome

text: illumina

text: B4:R2 Taxonomy ID:1218275


text: California Lutheran University

text: public

text: MGRAST

characteristic: collection time

text: B5:R1 Taxonomy ID:1218275

characteristic: description

text: Bos taurus x Bison bison

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: aqueous humour

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fillmore, CA

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bovine

text: bovine metagenome

text: IBK Shotgun Metagenomics Analysis Sample B5

characteristic: sample name

text: bovine metagenome

text: illumina

characteristic: sequencing method

text: B5:R1 Taxonomy ID:1218275


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: California Lutheran University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

text: B5:R2 Taxonomy ID:1218275

text: Bos taurus x Bison bison

text: microbial feature

text: aqueous humour

text: host-associated

text: USA

text: Fillmore, CA

text: host-associated

text: metagenome

text: bovine

characteristic: mgrast id

text: bovine metagenome

text: bovine metagenome

text: illumina

text: B5:R2 Taxonomy ID:1218275

characteristic: title


text: California Lutheran University

text: public

text: MGRAST

characteristic: collection time

text: B6:R2 Taxonomy ID:1218275

characteristic: description

text: Bos taurus x Bison bison

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: aqueous humour

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fillmore, CA

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bovine

text: bovine metagenome

characteristic: organism

text: IBK Shotgun Metagenomics Analysis Sample B6

characteristic: project name

text: bovine metagenome

text: illumina

text: B6:R2 Taxonomy ID:1218275


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: California Lutheran University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

text: B6:R1 Taxonomy ID:1218275

text: Bos taurus x Bison bison

text: microbial feature

text: aqueous humour

text: host-associated

text: USA

text: Fillmore, CA

text: host-associated

text: metagenome

text: bovine

text: bovine metagenome

characteristic: sample name

text: bovine metagenome

text: illumina

characteristic: sequencing method

text: B6:R1 Taxonomy ID:1218275


text: California Lutheran University

text: public

text: MGRAST

characteristic: collection time

text: B7:R1 Taxonomy ID:1218275

characteristic: description

text: Bos taurus x Bison bison

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: aqueous humour

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Fillmore, CA

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bovine

characteristic: mgrast id

text: bovine metagenome

text: IBK Shotgun Metagenomics Analysis Sample B7

text: bovine metagenome

text: illumina

text: B7:R1 Taxonomy ID:1218275

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: California Lutheran University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

text: B7:R2 Taxonomy ID:1218275

text: Bos taurus x Bison bison

text: microbial feature

text: aqueous humour

text: host-associated

text: USA

text: Fillmore, CA

text: host-associated

text: metagenome

text: bovine

text: bovine metagenome

characteristic: organism

characteristic: project name

text: bovine metagenome

text: illumina

text: B7:R2 Taxonomy ID:1218275


text: icclark

text: public

text: bay

characteristic: environment (biome)

text: bay

characteristic: environment (feature)

text: bay water

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: metagenome

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: metagenome

text: metagenome

text: (cultivated) gut microbiota

characteristic: title


text: ARO

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: chicken

characteristic: common name

text: The sample of abdominal (visceral) fat was taken from a female chicken at the onset of sexual maturity (age 4 months)

characteristic: description

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: female

characteristic: sex

text: Broiler KOBB500

characteristic: strain

text: adipose

characteristic: tissue lib

text: visceral fat

characteristic: tissue type

text: chicken visceral fat


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ARO

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: female

text: Layer Lohmann LSL classic

text: adipose

text: visceral fat

text: chicken visceral fat


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: UNIVERSITY OF QUEENSLAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF QUEENSLAND

characteristic: collection date

text: Soil

characteristic: environment (biome)

text: Agricultural

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Streptomyces coelicolor A3(2)

text: Differential gene expression in the model Actinomycete Streptomyces coelicolor A3(2) during soil organic carbon priming

characteristic: project name

text: Streptomyces coelicolor A3(2)

text: Illumina HiSeq

characteristic: sequencing method

text: Soil organic carbon priming metatranscriptomes