text: Salmonella enterica

text: MA.84 KAK-3

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


status: PUBLIC

text: Salmonella enterica

tag: attribute

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella enterica

characteristic: common name

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

characteristic: subject id

characteristic: title


text: Salmonella enterica

text: MA.14 PAR-27

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.33 BG-11

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.50 SUB-5

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.69 DAM-M

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.85 KAK-3

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.18 GREG

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.34, PAR-39

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.63 VAN-16

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.70 DAM-M

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.86 KAK-11

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.27 TCHA-3

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.35, SUB-13

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.65 PAR-35

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.71 TCHA-2

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.97 SEB-2

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.RKI 211

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.28 PAR-113

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.36 VAN-1

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.56 DEN-M1

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.72 KPG-1

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.100 TIR-9

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.19 ONK-46

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.37 PAR-39

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.58 DEN-5

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.73 KPG-1

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.101 TOR-11

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.4 PAR-79

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.21 SUB-17

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.38 THI-44

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.59 KAW-M4

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.78 SUB-72

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.102 VAN-22

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.1 SEB-14

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.22 PAR-42

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.42 DEN-M3

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.60 YAT-5

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.88 TIR-7

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.98 YEB-55

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.2 FOM-2

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.24 SUB-65

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.52 SEM-M2

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.62 VAN-16

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.79 BANI-1

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.92 VAN-24

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.17 YATA-3

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.39 SUB-4

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.44 BET-20

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.66 PAR-35

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.80 IGER-3

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB52 (Steffen Porwollik)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.197 st.67

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB11 (Fidelma Boyd)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB9 (Fidelma Boyd)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.SARB38 (Fidelma Boyd)

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.172 st.4

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.07ba 2207

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Salmonella enterica

text: MA.55 SUB-22

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: UNIVERSITY OF ABERDEEN

text: public

tag: Namespace:UNIVERSITY OF ABERDEEN

characteristic: collection date

text: house mouse

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

characteristic: project name

text: Mus musculus

text: Illumina Miseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITET

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UPPSALA UNIVERSITET

text: human

text: Homo sapiens

text: Homo sapiens


text: The Francis Crick Institute

text: public

tag: Namespace:The Francis Crick Institute

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mtDNA brain tissue

characteristic: title


name: E-MTAB-6019:C. acetobutylicum pks mutant replicate A

text: public

tag: Namespace:University of California-Berkeley, Energy Biosciences Institute

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples (10 mL) of fermentation broth were taken in biological triplicate from bioreactor fermentations of wild-type and ∆pks C. acetobutylicum 26 hours post-inoculation. P2 liquid media (80 g/L initial glucose) was used. The samples were centrifuged (4,000 xg, 10 min, 4oC) and the pellets were resuspended and stored in RNAprotect Cell Reagent (Qiagen). We performed a targeted in-frame deletion of the pks gene (ca_c3355) using an allelic exchange method previously developed forC. acetobutylicum15. The resulting mutant (Δpks) was confirmed by PCR analysis Total RNA was extracted using an RNeasy Mini kit (Qiagen) according the manufacturer’s instructions. An on-column DNase treatment was performed using DNase I (RNase-free) (NEB). RNA quality control, library construction, and library sequencing were performed by the University of California-Berkeley QB3 Functional Genomics Laboratory and Vincent J. Coates Genomic Sequencing Laboratory. RNA quality and concentration was assessed using a nanochip on an Agilent 2100 Bioanalyzer. Bacterial 16S and 23S rRNA was removed using a RiboZero kit (Illumina). The resulting mRNA was converted to an RNA-Seq library using an Apollo 324 with PrepX RNAseq Library Prep Kits (WaferGen Biosystems, Fremont, CA). RNA library sequencing was performed on an Illumina HiSeq4000 with 50 bp single end reads. Sequencing reads (50 bp) were processed and mapped to the C. acetobutylicum ATCC 824 genome (NCBI accession NC_003030.1 [chromosome] and NC_001988.2 [megaplasmid]) using CLC Genomics Workbench 9.0 with default parameters. Reads that did not uniquely align to the genome were discarded. Differences in gene expression between wild-type and ∆pks C. acetobutylicum were calculated using the same software. Genes were considered differentially expressed with p-value < 0.003 and | normalized fold change | > 2.0. Results of the RNA-Seq analysis are presented in Supplementary Table 3. STRING analysis was performed to determine putative protein-protein interactions between the differentially expressed genes revealed by RNA-Seq analysis.RNA quality and concentration was assessed using a nanochip on an Agilent 2100 Bioanalyzer. Bacterial 16S and 23S rRNA was removed using a RiboZero kit (Illumina). The resulting mRNA was converted to an RNA-Seq library using an mRNA-Seq library construction kit (Illumina).

characteristic: description

text: ca_c3355 deletion

characteristic: genotype

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

characteristic: replicate

text: Clostridium acetobutylicum

text: ATCC 824

characteristic: strain


name: E-MTAB-6019:C. acetobutylicum pks mutant replicate B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of California-Berkeley, Energy Biosciences Institute

text: public

text: ArrayExpress

text: ca_c3355 deletion

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: ATCC 824


name: E-MTAB-6019:C. acetobutylicum pks mutant replicate C

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: ca_c3355 deletion

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: ATCC 824


name: E-MTAB-6019:C. acetobutylicum wild-type replicate A

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild type genotype

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: ATCC 824

text: C. acetobutylicum wild-type replicate A


name: E-MTAB-6019:C. acetobutylicum wild-type replicate B

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild type genotype

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: ATCC 824

text: C. acetobutylicum wild-type replicate B


name: E-MTAB-6019:C. acetobutylicum wild-type replicate C

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: Clostridium acetobutylicum

text: ATCC 824

text: C. acetobutylicum wild-type replicate C


text: UNIVERSITY OF GLASGOW

text: public

tag: Namespace:UNIVERSITY OF GLASGOW

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Female

characteristic: sex

text: Female Carcass (Mir)

characteristic: tissue lib

text: Carcass

characteristic: tissue type

text: FlyAtlas2 Mir


text: synthetic construct

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: synthetic construct

text: synthetic construct

text: synthetic construct

characteristic: subject id

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Head (Mir)

text: Head

text: FlyAtlas2 Mir


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Hindgut (Mir)

text: Hindgut

text: FlyAtlas2 Mir


text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: tyrosinase


A.australis

text: ICBS UFRGS

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: A.australis

tag: Namespace:ICBS UFRGS

text: South American fur seal

text: Arctocephalus australis

text: Arctocephalus australis

text: A.australis


A.tropicalis 1

text: ICBS UFRGS

text: public

characteristic: SRA accession

text: A.tropicalis 1

characteristic: Submitter Id

text: subantarctic fur seal

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: A.tropicalis


A.tropicalis 2

text: ICBS UFRGS

text: public

text: A.tropicalis 2

text: subantarctic fur seal

characteristic: common name

text: Arctocephalus tropicalis

characteristic: organism

text: Arctocephalus tropicalis

text: A.tropicalis


A.tropicalis 3

text: ICBS UFRGS

text: public

text: A.tropicalis 3

text: subantarctic fur seal

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: A.tropicalis


A.tropicalis 4

text: ICBS UFRGS

text: public

text: A.tropicalis 4

text: subantarctic fur seal

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: A.tropicalis


A.tropicalis 5

text: ICBS UFRGS

text: public

text: A.tropicalis 5

text: subantarctic fur seal

text: Arctocephalus tropicalis

text: Arctocephalus tropicalis

text: A.tropicalis


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: SAB

characteristic: description

text: Illumina HiSeq 2500

characteristic: instrument model

text: Staphylococcus aureus

characteristic: read length

text: Staphylococcus aureus

type: has member


text: STATENS SERUM INSTITUT

text: public

text: SAB

text: Illumina MiSeq

text: Staphylococcus aureus

text: Staphylococcus aureus


text: STAZIONE ZOOLOGICA ANTON DOHRN

text: public

tag: Namespace:STAZIONE ZOOLOGICA ANTON DOHRN

unit: m

characteristic: depth

text: assessment of community composition of bacterial assemblages in the marine area influenced by the Po river. The samples have been obtained during a multidisciplinary cruise during the RITMARE Flagship Project

text: marine biome

characteristic: environment (biome)

text: sea

characteristic: environment (feature)

text: surface water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North Adriatic Sea

characteristic: marine region

text: metagenomes

characteristic: project name

text: filtration

characteristic: protocol label

unit: practical salinity unit

characteristic: salinity

characteristic: sampling campaign

text: Research Vassel Dalla Porta

characteristic: sampling platform

characteristic: sampling site

text: metagenomes

unit: ºC

characteristic: temperature

text: metagenomes from three stations


text: Burkholderia pseudomallei

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Burkholderia pseudomallei

characteristic: common name

text: Burkholderia pseudomallei

characteristic: organism

text: Burkholderia pseudomallei

characteristic: subject id

characteristic: title


text: Propioniferax innocua

text: SC

text: public

text: Propioniferax innocua

text: Propioniferax innocua

text: Propioniferax innocua


text: Brevibacterium epidermidis

text: SC

text: public

text: Brevibacterium epidermidis

text: Brevibacterium epidermidis

text: Brevibacterium epidermidis


text: Porphyromonas crevioricanis

text: SC

text: public

text: Porphyromonas crevioricanis

text: Porphyromonas crevioricanis

text: Porphyromonas crevioricanis


text: Streptomyces somaliensis

text: SC

text: public

text: Streptomyces somaliensis

text: Streptomyces somaliensis

text: Streptomyces somaliensis


text: Fusobacterium varium

text: SC

text: public

text: Fusobacterium varium

text: Fusobacterium varium

text: Fusobacterium varium


text: Universite-Francois-Rabelais

text: public

characteristic: collection date

text: Madagascar periwinkle

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

characteristic: isolation and growth condition

text: Catharanthus roseus

text: Madgascar Periwinkle

characteristic: organism common name

text: hydroponic grown roots

characteristic: plant developmental stage

text: water

characteristic: plant growth medium

text: adventitious root apex

characteristic: plant structure

text: water

characteristic: rooting conditions

text: Catharanthus roseus

text: RNA-seq analysis of C. roseus adventitious roots


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Atlantic cod

text: cod

characteristic: description

text: Gadus morhua

text: Gadus morhua


text: CEES

text: public

characteristic: Submitter Id

text: Atlantic cod

characteristic: common name

text: discard

text: Gadus morhua

characteristic: organism

text: Gadus morhua

characteristic: title


text: CEES

text: public

text: Atlantic cod

text: cod

text: Gadus morhua

text: Gadus morhua

text: POS


text: public

tag: Namespace:LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

text: Pool of the 50 strains from the sake x white tecc cross showing the longest CLS in calorie restriction condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

text: public

text: Pool of the 50 strains from the sake x white tecc cross showing the shortest CLS in calorie restriction condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: public

text: Pool of the 50 strains from the sake x white tecc Galoss showing the longest CLS in Galactose condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: public

text: Pool of the 50 strains from the sake x white tecc Galoss showing the shortest CLS in Galactose condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: public

text: Pool of the 50 strains from the sake x white tecc cross showing the longest CLS in Glucose 10% condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: public

text: Pool of the 50 strains from the sake x white tecc cross showing the shortest CLS in Glucose 10% condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: public

text: Pool of the 50 strains from the sake x white tecc cross showing the longest CLS in Glucose 2% condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: public

text: Pool of the 50 strains from the sake x white tecc cross showing the shortest CLS in Glucose 2% condition

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741


text: UNIVERSITY OF WARWICK

text: public

tag: Namespace:UNIVERSITY OF WARWICK

text: Escherichia phage vB_Eco_SLUR25

text: Escherichia phage vB_Eco_SLUR25

text: Escherichia phage vB_Eco_SLUR25

text: Escherichia phage vB_Eco_SLUR25


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR63

text: Escherichia phage vB_Eco_SLUR63

text: Escherichia phage vB_Eco_SLUR63

text: Escherichia phage vB_Eco_SLUR63


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR75

text: Escherichia phage vB_Eco_SLUR75

text: Escherichia phage vB_Eco_SLUR75

text: Escherichia phage vB_Eco_SLUR75


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR76

text: Escherichia phage vB_Eco_SLUR76

text: Escherichia phage vB_Eco_SLUR76

text: Escherichia phage vB_Eco_SLUR76


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR26

text: Escherichia phage vB_Eco_SLUR26

text: Escherichia phage vB_Eco_SLUR26

text: Escherichia phage vB_Eco_SLUR26


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR30

text: Escherichia phage vB_Eco_SLUR30

text: Escherichia phage vB_Eco_SLUR30

text: Escherichia phage vB_Eco_SLUR30


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR70

text: Escherichia phage vB_Eco_SLUR70

text: Escherichia phage vB_Eco_SLUR70

text: Escherichia phage vB_Eco_SLUR70


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR64

text: Escherichia phage vB_Eco_SLUR64

text: Escherichia phage vB_Eco_SLUR64

text: Escherichia phage vB_Eco_SLUR64


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR104

text: Escherichia phage vB_Eco_SLUR104

text: Escherichia phage vB_Eco_SLUR104

text: Escherichia phage vB_Eco_SLUR104


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR35

text: Escherichia phage vB_Eco_SLUR35

text: Escherichia phage vB_Eco_SLUR35

text: Escherichia phage vB_Eco_SLUR35


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR61

text: Escherichia phage vB_Eco_SLUR61

text: Escherichia phage vB_Eco_SLUR61

text: Escherichia phage vB_Eco_SLUR61


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR69

text: Escherichia phage vB_Eco_SLUR69

text: Escherichia phage vB_Eco_SLUR69

text: Escherichia phage vB_Eco_SLUR69


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR74

text: Escherichia phage vB_Eco_SLUR74

text: Escherichia phage vB_Eco_SLUR74

text: Escherichia phage vB_Eco_SLUR74


text: UNIVERSITY OF WARWICK

text: public

text: Escherichia phage vB_Eco_SLUR62

text: Escherichia phage vB_Eco_SLUR62

text: Escherichia phage vB_Eco_SLUR62

text: Escherichia phage vB_Eco_SLUR62


text: UMCG

text: public

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Uppsala BioCenter

text: public

tag: Namespace:Uppsala BioCenter

text: metagenome

text: metagenome

text: Fungal_microbiome_of_ectomycorrhizal_root-tip


text: MPI BREMEN

text: public

tag: Namespace:MPI BREMEN

text: Max Planck Institute for Marine Microbiology

characteristic: collected by

text: 0-2 cm sediment depth, water depth 8m, single sand grain

text: North Sea

characteristic: geographic location (country and/or sea)

text: surface sediment

characteristic: isolation source

text: 54Degree10'49.84''N 7Degree54'17.92''E

characteristic: lat lon

text: metagenome

text: metagenome

text: Site HelRoads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI BREMEN

text: public

text: 0-2 cm sediment depth, water depth 8m, DNA extraction

text: North Sea

text: surface sediment

text: 54Degree10'49.84''N 7Degree54'17.92''E

text: metagenome

text: metagenome

text: Site HelRoads


text: GENOME INSTITRUTE OF SINGAPORE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:GENOME INSTITRUTE OF SINGAPORE

text: human

text: androgenetic alopecia

characteristic: dermatology disorder

text: human skin

characteristic: environment (biome)

text: scalp

characteristic: environment (feature)

text: hair follicle

characteristic: environment (material)

text: Singapore

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-skin

characteristic: human skin environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Microbiome in the hair follicle of androgenetic alopecia patients

characteristic: project name

text: Homo sapiens

text: illumina

characteristic: sequencing method

text: hair follicle


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIBE-IG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: dog

characteristic: common name

text: Jagdterrier - male

characteristic: description

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Jagdterrier

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: dog

text: Australian Shepherd - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Australian Shepherd


text: UNIBE-IG

text: public

text: dog

text: Lagotto Romagnolo - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Lagotto Romagnolo


text: UNIBE-IG

text: public

text: dog

text: Lagotto Romagnolo - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Lagotto Romagnolo


text: UNIBE-IG

text: public

text: dog

text: Australian Cattle Dog - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Australian Cattle Dog


text: UNIBE-IG

text: public

text: dog

text: German Shepherd - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: German Shepherd


text: UNIBE-IG

text: public

text: dog

text: Weimaraner

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Weimaraner


text: UNIBE-IG

text: public

text: dog

text: Irish Terrier - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Irish Terrier


text: UNIBE-IG

text: public

text: dog

text: Basenji - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Basenji


text: UNIBE-IG

text: public

text: dog

text: Basenji - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Basenji


text: URMITE

text: public

characteristic: isolate

text: human fecal sample

characteristic: isolation source

text: Ezakiella peruensis

text: Ezakiella peruensis

characteristic: strain

text: Ezakiella peruensis genome


text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

text: THE ROSLIN INSTITUTE

text: public

characteristic: SRA accession

tag: Namespace:THE ROSLIN INSTITUTE

characteristic: Submitter Id

text: 8 weeks

characteristic: age

text: transcription profiling by high throughput sequencing

characteristic: assay type

characteristic: breed

characteristic: cell or tissue type

text: chicken

text: bone marrow derived macrophages (+ lipopolysaccharide, 0 hr.) from female layer (CSF1R-MacApple transgenic NOVOgen Brown)

text: total RNA

characteristic: experiment target

characteristic: extraction protocol

text: Edinburgh Genomics, The University of Edinburgh, EH9 3FL, Edinburgh, Scotland

text: decimal degrees

text: decimal degrees

text: Gallus gallus

text: Trizol, frozen

characteristic: sample storage

text: cryopreservation,other

characteristic: sample storage processing

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 8 weeks

text: layer (CSF1R-MacApple transgenic NOVOgen Brown)

text: bone marrow derived macrophages (+ lipopolysaccharide, 0 hr.)

text: chicken

characteristic: common name

characteristic: description

text: total RNA

text: decimal degrees

text: decimal degrees

text: Gallus gallus

characteristic: organism

text: Trizol, frozen

text: cryopreservation,other

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: THE ROSLIN INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 8 weeks

characteristic: age

characteristic: assay type

text: broiler (Ross 308)

characteristic: breed

text: chicken

text: bone marrow derived macrophages (+ lipopolysaccharide, 0 hr.) from female broiler (Ross 308)

text: total RNA

text: decimal degrees

text: decimal degrees

text: Gallus gallus

text: Trizol, frozen

text: cryopreservation,other

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: female


characteristic: ENA-LAST-UPDATE

text: THE ROSLIN INSTITUTE

text: public

text: 8 weeks

text: broiler (Ross 308)

characteristic: cell or tissue type

text: chicken

text: bone marrow derived macrophages (+ lipopolysaccharide, 0 hr.) from male broiler (Ross 308)

text: total RNA

characteristic: experiment target

characteristic: extraction protocol

text: decimal degrees

text: decimal degrees

text: Gallus gallus

text: Trizol, frozen

characteristic: sample storage

text: cryopreservation,other

characteristic: sample storage processing

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex


characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 8 weeks

text: chicken

characteristic: common name

text: bone marrow derived macrophages (+ lipopolysaccharide, 24 hr.) from female layer (CSF1R-MacApple transgenic NOVOgen Brown)

characteristic: description

text: total RNA

text: decimal degrees

text: decimal degrees

text: Gallus gallus

text: Trizol, frozen

text: cryopreservation,other

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: THE ROSLIN INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 8 weeks

characteristic: age

text: bone marrow derived macrophages (+ lipopolysaccharide, 24 hr.)

text: chicken

text: total RNA

text: decimal degrees

text: decimal degrees

text: Gallus gallus

characteristic: organism

text: Trizol, frozen

text: cryopreservation,other

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

text: THE ROSLIN INSTITUTE

text: public

text: 8 weeks

characteristic: assay type

text: broiler (Ross 308)

characteristic: breed

characteristic: cell or tissue type

text: chicken

text: bone marrow derived macrophages (+ lipopolysaccharide, 24 hr.) from female broiler (Ross 308)

text: total RNA

characteristic: experiment target

characteristic: extraction protocol

text: decimal degrees

text: decimal degrees

text: Gallus gallus

text: Trizol, frozen

characteristic: sample storage

text: cryopreservation,other

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: female


characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 8 weeks

text: broiler (Ross 308)

text: chicken

text: bone marrow derived macrophages (+ lipopolysaccharide, 24 hr.) from male broiler (Ross 308)

text: total RNA

text: decimal degrees

text: decimal degrees

text: Gallus gallus

text: Trizol, frozen

text: cryopreservation,other

characteristic: sample storage processing

text: Gallus gallus

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia coli

characteristic: common name

text: Escherichia coli

text: Escherichia coli

characteristic: subject id


text: Escherichia coli

text: NCTC 9001

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: NCTC 9001

characteristic: title


characteristic: External Id

text: OX

text: public

characteristic: broker name

characteristic: description

text: Neisseria meningitidis

text: Neisseria meningitidis


text: GENOME INSTITRUTE OF SINGAPORE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: human

text: skin

characteristic: environment (biome)

text: skin

characteristic: environment (feature)

text: skin

characteristic: environment (material)

text: Singapore

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-skin

characteristic: human skin environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: illumina

characteristic: sequencing method

text: skin


text: iPS-derived cardiomyocytes

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id

characteristic: title


text: Salmonella enterica subsp. enterica serovar Typhimurium str. D23580

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public


text: Klebsiella phage phiK02

text: SC

text: public

text: Klebsiella phage phiK02

text: Klebsiella phage phiK02

text: Klebsiella phage phiK02


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Typhi

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Enteritidis

text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Paratyphi B

text: SC

text: public


characteristic: ArrayExpress-Species

text: SC

text: public


text: uncultured bacterium

text: SC

text: public

text: uncultured bacterium

text: uncultured bacterium

text: uncultured bacterium


text: Salmonella enterica subsp. enterica serovar Choleraesuis

text: SC

text: public


text: SC

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

type: AMR curated data - CABBAGE

value: cefpodoxime

value: CLSI

value: disk diffusion

value: mm

value: susceptible

value: Salmonella enterica

value: ceftriaxone

value: nalidixic acid

value: trimethoprim-sulfamethoxazole

value: tetracycline

value: ampicillin

value: ciprofloxacin

value: ceftazidime

value: cefotaxime

value: chloramphenicol

value: intermediate


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: resistant


text: SC

text: public

text: KEN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: common name

text: Salmonella

text: Homo sapiens

value: cefpodoxime


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: organism

characteristic: subject id

characteristic: title

value: CLSI


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: disk diffusion


text: SC

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

characteristic: host

value: mm


text: Salmonella enterica subsp. enterica serovar Paratyphi C

characteristic: ArrayExpress-SPECIES

text: SC

text: public


characteristic: ENA-CHECKLIST

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: isolate

value: susceptible


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: Salmonella enterica


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: ceftriaxone


text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: nalidixic acid


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: trimethoprim-sulfamethoxazole


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: tetracycline


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: ampicillin


characteristic: ArrayExpress-SPECIES

text: SC

text: public


characteristic: ENA-CHECKLIST

text: SC

text: public


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: ciprofloxacin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: ceftazidime


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: cefotaxime


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: chloramphenicol


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: intermediate


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: resistant


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: cefpodoxime


text: SC

text: public


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: CLSI


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: disk diffusion


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: mm


text: SC

text: public

text: KEN

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Homo sapiens

value: susceptible


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: Salmonella enterica


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: ceftriaxone


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: nalidixic acid


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: trimethoprim-sulfamethoxazole


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: tetracycline


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: ampicillin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: ciprofloxacin


characteristic: External Id

text: SC

text: public

characteristic: INSDC status


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: ceftazidime


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: cefotaxime


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: chloramphenicol


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: intermediate


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: resistant


characteristic: External Id

text: SC

text: public

characteristic: INSDC status


text: SC

text: public

text: KEN

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Homo sapiens

value: cefpodoxime


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: CLSI


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: disk diffusion


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: mm


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: susceptible


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: Salmonella enterica


text: SC

text: public


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: ceftriaxone


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: nalidixic acid


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: trimethoprim-sulfamethoxazole


text: SC

text: public

text: KEN

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Homo sapiens

value: tetracycline


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: ampicillin


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: ciprofloxacin


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: ceftazidime


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: cefotaxime


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: chloramphenicol


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: intermediate


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: resistant


text: SC

text: public

text: KEN

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella

text: Homo sapiens

value: cefpodoxime


text: SC

text: public

text: KEN

characteristic: common name

text: Salmonella

text: Homo sapiens

characteristic: organism

value: CLSI


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: subject id

characteristic: title

value: disk diffusion


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: mm


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: susceptible


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public


text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

characteristic: host

characteristic: isolate

value: Salmonella enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: ceftriaxone


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: KEN

text: Salmonella

text: Homo sapiens

value: nalidixic acid


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id


text: SC

text: public

characteristic: common name

characteristic: organism


text: SC

text: public

characteristic: subject id

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: trimethoprim-sulfamethoxazole


text: SC

characteristic: INSDC last update

text: public

text: KEN

text: Salmonella

characteristic: genus

text: Homo sapiens

value: tetracycline


characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: KEN

text: Salmonella

text: Homo sapiens

value: ampicillin


text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

characteristic: collection date

text: Anaerobic digester microbiome

characteristic: environment (biome)

text: mesophilic sludge digester

characteristic: environment (feature)

text: Anaerobic digester biomass

characteristic: environment (material)

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: anaerobic digester metagenome

text: Normigas

characteristic: project name

text: anaerobic digester metagenome

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AALBORG UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Anaerobic digester microbiome

text: mesophilic sludge digester

text: Anaerobic digester biomass

text: Denmark

text: metagenome

text: anaerobic digester metagenome

characteristic: organism

text: Normigas

text: anaerobic digester metagenome

text: Nanopore

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: The University of Texas at Dallas

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:The University of Texas at Dallas

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: B cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: GM12878 cell line was obtained from Coriell Biorepository and maintained as recommended by the supplier. Cells were infected with Sendai Virus Cantell Strain (ATCC VR-907) from Charles River Laboratories was used. We infected cells at 3000 HA units per 1 million cells (or at ~1x10e8 EID50). At indicated time after infection, cells were cross linked with 1% formaldehyde as described previously in Kim et al PNAS 108:7391-7396 (2011). Original reference for ChIP immunopreciptiation protocol can be found in the supplementary methods: http://www.pnas.org/content/suppl/2003/06/09/1332764100.DC1/2764SuppMaterialsandMethods.pdf ref: doi: 10.1073/pnas.1332764100 Chromatin was prepared and immunoprecipitated as previously described (Kim, Y.J., Cecchini, K.R. & Kim, T.H. Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus. Proc Natl Acad Sci U S A 108, 7391-6 (2011)). We have used anti-Histone H3K27Ac antibody from Abcam (cat #Ab4729). ThruPLEX® DNA-seq Kit from Rubicon Genomics was used for multiplexed ChIP-seq library prep of chromatin. Indexed samples were quantitated with qPCR and mixed in equimolar amounts. Input sample was prepared with an Illumina DNA-seq kit.

characteristic: description

text: normal

characteristic: disease

text: Sendai virus cantell strain (ATCC VR-907)

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:UTRECHT UNIVERSITY

unit: L

characteristic: amount or size of sample collected

characteristic: collection date

text: Azolla plant biological replicate 2

text: Urban

characteristic: environment (biome)

text: Water surface

characteristic: environment (feature)

text: 5g of whole plantlets, briefly washed

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Ditch near the street Laan van Maarschalkerweerd in Utrecht, The Netherlands.

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Azolla filiculoides

text: plant-associated

characteristic: plant-associated environmental package

text: The Azolla metagenome

characteristic: project name

text: Fish net

characteristic: sample collection device or method

text: stored in individual boxes of .5 Liters

characteristic: sample material processing

unit: °C

characteristic: sample storage temperature

text: Azolla filiculoides

text: illumina short reads

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: Azolla plant biological replicate 1

characteristic: description

text: Urban

text: Water surface

text: 5g of whole plantlets, briefly washed

text: Netherlands

text: metagenome

text: Azolla filiculoides

characteristic: organism

text: plant-associated

text: The Azolla metagenome

text: Fish net

text: stored in individual boxes of .5 Liters

text: Azolla filiculoides

text: illumina short reads

characteristic: title


text: UTRECHT UNIVERSITY

text: public

characteristic: collection date

text: Azolla plant biological replicate 3

text: Urban

characteristic: environment (biome)

text: Water surface

characteristic: environment (feature)

text: 5g of whole plantlets, briefly washed

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Azolla filiculoides

text: plant-associated

characteristic: plant-associated environmental package

text: The Azolla metagenome

characteristic: project name

text: Fish net

characteristic: sample collection device or method

text: stored in individual boxes of .5 Liters

characteristic: sample material processing

text: Azolla filiculoides

text: illumina short reads


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

text: Filtrate of 1 L ditch Water, inhabited by Azolla filiculoides

characteristic: description

text: Urban

text: Water surface

text: Ditch water

text: Netherlands

text: metagenome

text: Azolla filiculoides

text: plant-associated

text: The Azolla metagenome

text: Fish net and bottle

text: stored in individual bottles of 1 L

characteristic: sample storage temperature

text: Azolla filiculoides

text: illumina short reads

characteristic: sequencing method


characteristic: CD25 measurement (log10)

characteristic: CD26L measurement (log10)

characteristic: CD44 measurement (log10)

characteristic: CD69 measurement (log10)

text: public

tag: Namespace:Cancer Research UK Cambridge Institute University of Cambridge

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Freshly dissected spleens from OT-I Rag1-deficient mice were homogenized through a 70 µm filter. CD8+ T cells were separated by negative selection using the CD8a+ T Cell Isolation Kit, mouse (Miltenyi Biotec). Isolated naive CD8+ OT-I T cells were stained with proliferation dye eFluor 450 (eBioscience). 100,000 cells per well of 96-well round-bottom plates were stimulated with 1 µM peptide in 200 µL complete RPMI (RPMI 1640 with 10% FCS, L-glutamine, sodium pyruvate, penicillin-streptomycin, and beta-mercaptoethanol) with 20 ng/mL (≥100 U/mL) murine IL-2. After culture, cells were washed in PBS, blocked with FcR blocking antibody (clone 93, Biolegend) and stained with Zombie Aqua viability dye (Biolegend), anti-CD8 eVolve 655 (clone 53-6.7, eBioscience), anti-CD44 APC-eFluor780 or APC-FIRE750 (clone IM7, eBioscience or Biolegend, respectively), anti-CD62L PE (clone MEL-14, eBioscience), anti-CD25 Alexa Fluor 488 (clone PC61.5, eBioscience), and anti-CD69 APC (clone H1.2F3, eBioscience). Cells were sorted on a BD Influx (BD Biosciences), selecting live cells that expressed CD8 and that had not proliferated. We did not see proliferation at the time points we examined. Expression of all surface proteins was recorded for each indexed cell. Single cell preparation was adapted from Picelli et al (2014, Nat Protoc, 9:171). Cells were sorted into 96-well plates holding 4 µL of lysis buffer composed of 2.3 U SUPERase In RNase inhibitor (Thermo Fisher Scientific), 0.11 % (v/v) Triton X-100 (Sigma), 12.5 mM DTT (Thermo Fisher Scientific), and 2.5 mM dNTP mix (Thermo Fisher Scientific). cDNA synthesis and amplification were adapted from Picelli et al (2014, Nat Protoc, 9:171). 1 µL annealing mix containing ERCC RNA Spike-In Mix (Thermo Fisher Scientific) diluted 1 in 30,000,000 and 10 µM oligo-dT30VN (Sigma) was added to each well before reverse transcription with SuperScript II (Invitrogen). cDNA amplification was performed with 23 PCR cycles and the resulting PCR products purified with Ampure XP Beads (Agencourt) at a volume ratio of 0.7:1 beads:DNA. Libraries were prepared using the Nextera XT DNA Sample Preparation Kit and indexes from the Nextera XT Index Kit v2 Set A and Nextera XT Index Kit v2 Set D (Illumina). Each plate of libraries was pooled, cleaned with Ampure XP beads, and quantified using KAPA Library Quantification Kit (Roche). Equimolar quantities of libraries from each plate were combined for sequencing.

text: normal

characteristic: disease

text: OT-I; Rag1 knockout

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: single cell identifier

text: OK

characteristic: single cell well quality

characteristic: strain

characteristic: title

text: single cell

characteristic: well information


characteristic: CD25 measurement (log10)

characteristic: CD26L measurement (log10)

characteristic: CD44 measurement (log10)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

characteristic: description

text: normal

text: OT-I; Rag1 knockout

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: OK

text: single cell


characteristic: CD69 measurement (log10)

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: normal

characteristic: disease

text: OT-I; Rag1 knockout

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: single cell identifier

text: not OK

characteristic: single cell well quality

characteristic: strain

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

text: normal

text: OT-I; Rag1 knockout

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: not OK

characteristic: title

text: no cell

characteristic: well information


characteristic: CD25 measurement (log10)

characteristic: CD26L measurement (log10)

characteristic: CD44 measurement (log10)

characteristic: CD69 measurement (log10)

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: OT-I; Rag1 knockout

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: female

text: not OK

text: 2 cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Texas at Dallas

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: cell line

text: B cell

text: human

text: Protocols: GM12878 cell line was obtained from Coriell Biorepository and maintained as recommended by the supplier. Cells were infected with Sendai Virus Cantell Strain (ATCC VR-907) from Charles River Laboratories was used. We infected cells at 3000 HA units per 1 million cells (or at ~1x10e8 EID50). To obtain nascent RNAs for sequencing, we followed the GRO-seq protocol from Greer et al, Cell Reports 13:1444-1455 (2015). Two 15-cm plates of confluent cells (~10-20 million cells) were washed 3 times with ice cold PBS buffer and incubated for 5 min with 10 mL cold swelling buffer (10 mM Tris-Cl pH 7.5, 2 mM MgCl2, 3 mM CaCl2) for each plate on ice. Cells were scraped from the plate, harvested, centrifuged at 500xg for 10 min at 4°C and were resuspended in 1 mL of lysis buffer (swelling buffer with 0.5% IGEPAL, 10% glycerol and 4 U/mL SUPERaseIn) with gentle mixing by pipetting with a widened boar pipette tip up and down 20 times. For the isolation of nuclei, 9 mL of the same lysis buffer (up to total 10 mL) was added. After collecting the nuclei by centrifugation (at 300xg for 5 min at 4°C), it was resuspended in 1 mL freezing buffer per 5 million nuclei, and pelleted and resuspended to the final volume of 100 μL (about 5-10 million nuclei/100 μL) of freezing buffer (50 mM Tris pH 8.3, 5 mM MgCl2, 0.1 mM EDTA, 40% glycerol). Before the NRO reaction, NRO reaction buffer (10 mM Tris-Cl pH 8.0, 5 mM MgCl2, 1 mM DTT, 300 mM KCl, 50 μM ATP, GTP and Br-UTP, 2 μM CTP, 0.4 U/μL RNasin, and 2% sarkosyl) was generated and pre-heated to 30°C for 5 min. An equal volume (100 μL) of NRO reaction buffer was mixed with 100 μL of thawed nuclei solution in freezing buffer and was incubated at 30 °C for 5 min with mixing at 800 rpm on a thermomixer. Then, RQ1 DNaseI (Promega) was added along with DNaseI reaction buffer and samples were incubated at 37 °C for 20 min with mixing 800 rpm. To stop the NRO reaction, 225 μL NRO stop solution was added to the reaction and 25 μL of Proteinase K was added. The sample was incubated for 1 hr at 55 °C. Nuclear RNA was extracted with acidic phenol (Sigma) then chloroform (Sigma), and was precipitated and washed. RNA was then resuspended in 20 μL of nuclease free water and subjected to base hydrolysis by addition of 5 μL of 1N NaOH on ice for 10 min. The reaction was neutralized with 50 μL of 0.5 M Tris-Cl pH 6.8. Then, RNA was purified through BioRad P-30 RNase-free spin column (BioRad) following to the manufacturer’s instructions, and was treated with 7 μL of DNaseI buffer and 3μL RQ1 DNaseI (Promega) for 10 min at 37 °C, and purified again with a BioRad P-30 column. Extracted RNA was then Br-UTP binding: BrU incorporated nascent RNA from total nuclear RNA was purified using Br-UTP beads.Anti-BrU agarose beads (Santa Cruz Biotech) were equilibrated by washing them 2 times in 500 μL BrU binding Buffer (0.25× SSPE, 1 mM EDTA, 0.05% Tween-20, 37.5 mM NaCl) and blocked in 1mL BrU blocking buffer (1x binding buffer, 0.1% PVP, and 1 mg/mL BSA) for 1 hr with rotation at 4 °C. During the blocking step, beads were washed 2 times with 500 μL binding buffer, NRO RNA sample was heated at 65 °C for 5 min then placed on ice at least for 2 min. 50 μL of the blocked bead mixture was combined with RNA sample in 450 μL binding buffer and combined with bind RNA to beads for 1 hr by rotating at 4 °C. After binding, beads were washed once in low salt buffer (0.2 × SSPE, 1 mM EDTA, 0.05% Tween-20), once in high salt buffer (0.25x SSPE, 1 mM EDTA, 0.05% Tween-20, 137.5 mM NaCl) and twice in TET buffer (TE with 0.05% Tween-20). BrU-incorporated RNA was eluted 4 times with 100 μL elution buffer (20 mM DTT, 300 mM NaCl, 5 mM Tris-Cl pH 7.5, 1 mM EDTA and 0.1% SDS). RNA was then extracted and precipitated as described above. The precipitated RNA was re-suspended in 20 μL of water. RNA was heated to 65°C for 5 min and cooled on ice at least for 2 min. The RNA was treated with TAP (by adding 3 μL 10x TAP buffer, 5 μL water, 1 μL SUPERaseIn (Promega), 0.5 μL TAP) at 37 for 1.5 hr, and then preincubated with PNK reaction premix (1 μL PNK(NEB), 1 μL 300 mM MgCl2, 1 μL 100 mM ATP) for 30 min. Afterward, PNK reaction main mix (20 μL PNK buffer (NEB), 2 μL 100 mM ATP (Roche), and 142 μL water, 1 μL SUPERaseIN (Promega) and another 2 μL PNK(NEB)) was added to the preincubated RNA sample and incubated at 37 °C for 30 min. The RNA was extracted and precipitated again as above, and resuspended in 9 μL water. 5’-adaptor ligation: BrU-RNA, 5’ adaptor (5uM) and PEG was heated on 65 °C for 5min then cooled on ice. Ligation mixture (1.5 μL 5’adaptor (5uM), 2uL 10x RNA ligation buffer, 1.5uL T4 RNA ligase, 1uL SUPERRNaseIN, 5uL 50% PEG 8000) was added to the 9uL BrU-RNA and incubated at 22 °C or RT for 4-6 hours. Then, 5’ adaptor ligated BrU-RNA was purified with the bead binding method as described above. 3’-adaptor ligation: the same ligation reaction for the 5’-adaptor ligation described above was performed with the 3’ adaptor in place of the 5’ adaptor. RT-reaction RNA and RT oligo (5’-CAAGCAGAAGACGGCATACGA-3’) was heated to 65 °C for 10 min and cooled on ice. RT reagent mixture (1 μL RT oligo (100 μM), 5x first strand buffer (Invitrogen), 10mM dNTPs (Roche), 100mM DTT (Invitrogen), 1 μL RNase inhibitor (Promega) without Superscript III (Invitrogen) was added to RNA sample and incubated at 48°C for 3 min, and then 1 μL superscript III was added to the RT reaction sample and incubated at 48°C for 20 min, 50°C for 45 min, sequentially. After RT reaction, RNA was eliminated by adding RNase cocktail and RNaseH and incubation at 37°C for 30 min. PCR amplification: The ssDNA template was amplified by PCR using the Phusion High-Fidelity enzyme (NEB) according to the manufacturer’s instructions. The small RNA PCR primers (5′-CAAGCAGAAGACGGCATACGA-3′) and (5′AATGATACGGCGACCACCGACAGGTT-3′) were used to generate DNA for sequencing. PCR was performed with an initial 5 min denaturation at 98 °C, followed by 10~14 cycles of 10 sec denaturation at 98 °C, 30 sec annealing at 54 °C and 15 sec extension at 72 °C. The PCR product was purified by run on a 6 % native polyacrylamide TBE gel and recovered by cutting the region of the gel between 100bp to 300bp. The product was purified through the gel extraction method. The prepared DNA was then sequenced on the Illumina Genome Analyzer II according to the manufacturer’s instructions with small RNA sequencing primer 5′-CGACAGGTTCAGAGTTCTACAGTCCGACGATC-3′.

text: normal

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


text: INRA

text: public

characteristic: Submitter Id

text: stephane CHAILLOU

characteristic: collected by

characteristic: collection date

characteristic: culture collection

text: Beef carpaccio

characteristic: description

text: Beef carpaccio

characteristic: isolation source

text: Lactobacillus sakei

text: Lactobacillus sakei

characteristic: strain

text: food sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

text: public

text: stephane CHAILLOU

text: Beef carpaccio

text: Beef carpaccio

text: Lactobacillus sakei

characteristic: organism

text: Lactobacillus sakei

text: Food sample


text: KI-BN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: synthetic construct

text: synthetic construct


text: INRA

text: public

characteristic: Submitter Id

text: Fabbrizio Chieramonti

characteristic: collected by

text: Human feces

text: Human feces

text: Lactobacillus sakei

text: Lactobacillus sakei

text: feces sample


text: INRA

text: public

text: stephane Chaillou

characteristic: collection date

text: French dry-type pork sausage

text: French dry-type pork sausage

text: Lactobacillus sakei

text: Lactobacillus sakei

text: food sample


text: INRA

text: public

text: stephane Chaillou

text: French dry-type Pork sausage

characteristic: description

text: French dry-type Pork sausage

text: Lactobacillus sakei

text: Lactobacillus sakei

text: food sample


text: INRA

text: public

text: stephane Chaillou

characteristic: culture collection

text: French dry-type pork sausage

text: French dry-type pork sausage

characteristic: isolation source

text: Lactobacillus sakei

text: Lactobacillus sakei

text: food sample


text: INRA

text: public

text: INRA Jouy

text: Horse meat

text: Horse meat

text: Lactobacillus sakei

text: Lactobacillus sakei

characteristic: strain

text: food sample

characteristic: title


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: subject id


text: Streptococcus viridans

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Streptococcus viridans

text: Streptococcus viridans

characteristic: organism

text: Streptococcus viridans


text: INRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: stephane Chaillou

characteristic: collected by

text: French dry-type Pork sausage

text: French dry-type Pork sausage

text: Lactobacillus sakei

text: Lactobacillus sakei

text: Food sample


text: INRA

text: public

text: Paired end Illumina sequencing of one female red junglefowl

characteristic: description

text: Gallus gallus bankiva

text: Gallus gallus bankiva


text: AALBORG UNIVERSITY

text: public

characteristic: collection date

text: Anaerobic digester microbiome

characteristic: environment (biome)

text: Anaerobic sludge digester

characteristic: environment (feature)

text: Anaerobic digester biomass

characteristic: environment (material)

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: anaerobic digester metagenome

text: Normigas

characteristic: project name

text: anaerobic digester metagenome

text: Illumina

characteristic: sequencing method

text: 2015W9-Randers RT2

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AALBORG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Anaerobic digester microbiome

text: Anaerobic sludge digester

text: Anaerobic digester biomass

text: Denmark

text: metagenome

text: anaerobic digester metagenome

characteristic: organism

text: Normigas

text: anaerobic digester metagenome

text: Illumina

text: 2016W12-Randers Rt2

text: wastewater/sludge


text: AALBORG UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Anaerobic digester microbiome

characteristic: environment (biome)

text: Anaerobic sludge digester

characteristic: environment (feature)

text: Anaerobic digester biomass

characteristic: environment (material)

text: Denmark

characteristic: geographic location (country and/or sea)

text: metagenome

text: anaerobic digester metagenome

text: Normigas

text: anaerobic digester metagenome

text: Illumina

text: 2016W21-Randers Rt2

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