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characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Continuous perchlorate treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Perchlorate_continuous_Rep_1_port_2_1_day 174

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment

characteristic: title


text: UC BERKELEY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Perchlorate_continuous_Rep_1_port_3_day 174

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Crude oil contaminated sand

characteristic: environment (biome)

text: hydrocarbon contaminated sample

characteristic: environment (feature)

text: crude oil contaminated sand

characteristic: environment (material)

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment


text: UC BERKELEY

text: public

text: Perchlorate_continuous_Rep_2_port_2_day 174

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

characteristic: organism

text: Microbial souring control

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Continuous perchlorate treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Perchlorate_continuous_Rep_2_port_2_1_day 174

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment

characteristic: title


text: UC BERKELEY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Perchlorate_continuous_Rep_2_port_3_day 174

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Crude oil contaminated sand

characteristic: environment (biome)

text: hydrocarbon contaminated sample

characteristic: environment (feature)

text: crude oil contaminated sand

characteristic: environment (material)

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment


text: UC BERKELEY

text: public

text: Perchlorate_continuous_Rep_1_port_1_day 215

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

characteristic: organism

text: Microbial souring control

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Continuous perchlorate treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Perchlorate_continuous_Rep_1_1_port_1_day 215

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment

characteristic: title


text: UC BERKELEY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Perchlorate_continuous_Rep_1_port_2_day 215

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Crude oil contaminated sand

characteristic: environment (biome)

text: hydrocarbon contaminated sample

characteristic: environment (feature)

text: crude oil contaminated sand

characteristic: environment (material)

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment


text: UC BERKELEY

text: public

text: Perchlorate_continuous_Rep_1_port_3_day 215

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

characteristic: organism

text: Microbial souring control

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Continuous perchlorate treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Perchlorate_continuous_Rep_1_1_port_3_day 215

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment

characteristic: title


text: UC BERKELEY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Perchlorate_continuous_Rep_2_1_port_1_day 215

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Crude oil contaminated sand

characteristic: environment (biome)

text: hydrocarbon contaminated sample

characteristic: environment (feature)

text: crude oil contaminated sand

characteristic: environment (material)

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment


text: UC BERKELEY

text: public

text: Perchlorate_continuous_Rep_2_port_1_day 215

text: 16S rRNA gene amplicon bacterial community sequences in the presence of sulfate

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

characteristic: organism

text: Microbial souring control

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Continuous perchlorate treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UC BERKELEY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Perchlorate_continuous_Rep_2_port_2_day 215

text: Crude oil contaminated sand

text: hydrocarbon contaminated sample

text: crude oil contaminated sand

text: USA

text: metagenome

text: miscellaneous natural or artificial environment

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment

characteristic: title


text: UC BERKELEY

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Perchlorate_continuous_Rep_2_1_port_3_day 215

characteristic: Submitter Id

characteristic: collection date

characteristic: description

text: Crude oil contaminated sand

characteristic: environment (biome)

text: hydrocarbon contaminated sample

characteristic: environment (feature)

text: crude oil contaminated sand

characteristic: environment (material)

text: USA

text: metagenome

text: metagenome

text: Microbial souring control

text: metagenome

text: Illumina MiSeq

text: Continuous perchlorate treatment


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: subject id


name: C. sonorensis blood feeding transcriptomic response

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:European Bioinformatics Institute (EMBL-EBI)

text: Transcriptomic experiments of Culicoides sonorensis blood feeding

text: Culicoides sonorensis

text: Culicoides sonorensis

text: C. sonorensis vector competent vs refractory feeding


text: UCC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ryegrass first cut silage; mixed dairy slurry

unit: g

characteristic: biomass

text: Grass Silage AD at increasing rates met instability above OLR 2.5; rescue affected with Fe-Co-Ni supplement at OLR 4, with analagous reactor digesting grass silage-slurry at identical rates.

text: terrestrial artificial anaerobic

text: anaerobic digestion biogas reactor

text: grass silage / grass silage-slurry

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: ACGAGTGCGT, ACGCTCGACA, AGACGCACTC, AGCACTGTAG, ATCAGACACG, ATATCGCGAG, CGTGTCTCTA, CTCGCGTGTC, TAGTATCAGC, TCTCTATGCG, TGATACGTCT, TACTGAGCTA, TACTGAGCTA,

characteristic: multiplex identifiers

text: biogas fermenter metagenome

text: initial denaturing:94degC_5min; 33 cycles:94degC_40sec, 55degC_40sec, 72degC_1min; final extension:72degC_5min

characteristic: pcr conditions

text: 454_U905F GTATCGCCTCCCTCGCGCCATCAG xxxxMIDxxx TGAAACTYAAAGGAATTG, 454_U1492R CTATGCGCCTTGCCAGCCCGCTCAG xxxxMIDxxx GGTTACCTTGTTACGACTT

characteristic: pcr primers

text: grass silage TE

characteristic: project name

text: 3 replicates of 1

characteristic: sample volume or weight for DNA extraction

text: biogas fermenter metagenome

text: pyrosequencing FLX+ AB chemistry

characteristic: sequencing method

characteristic: temperature

text: grass silage

characteristic: title

type: has member


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia coli

characteristic: common name

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: subject id


text: WAGENINGEN UNIVERSITY

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:WAGENINGEN UNIVERSITY

text: Rumen fluid

characteristic: description

text: gut metagenome

text: gut metagenome

text: Rumen Bacterial profiling


text: WAGENINGEN UNIVERSITY

text: public

text: Fibrous content

text: gut metagenome

text: gut metagenome

text: Rumen Bacterial profiling


text: WAGENINGEN UNIVERSITY

text: public

text: Rumen fluid

text: gut metagenome

text: gut metagenome

text: Rumen Archaeal profiling


text: WAGENINGEN UNIVERSITY

text: public

text: Rumen fluid

text: gut metagenome

text: gut metagenome

text: Rumen Bacterial profiling


text: WAGENINGEN UNIVERSITY

text: public

text: Fibrous content

text: gut metagenome

text: gut metagenome

text: Rumen Bacterial profiling


text: URMITE

text: public

text: vagina

characteristic: isolation source

text: Anaerococcus sp. Marseille-P3625

text: Anaerococcus sp. Marseille-P3625

characteristic: strain

text: Culturomics project


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: quiescent

characteristic: age

text: years

characteristic: age unit

text: Missing: Not provided

characteristic: anonymized name

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: asthma

text: UBERON:feces

characteristic: body habitat

characteristic: body mass index

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

characteristic: cat

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: chickenpox

characteristic: collection date

characteristic: collection time

text: 2012-07-22 17:15

text: Missing: Not provided

text: Missing: Not provided

characteristic: contraceptive

text: Missing: Not provided

text: Missing: Not provided

characteristic: csection

text: Missing: Not provided

text: Missing: Not provided

text: Index family 01-00010

text: Missing: Not provided

characteristic: diabetes

text: Missing: Not provided

text: Missing: Not provided

characteristic: disease location

text: true

text: Missing: Not provided

characteristic: dog

text: Missing: Not provided

characteristic: dominant hand

text: Missing: Not provided

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Crohn's Disease

text: Missing: Not provided

characteristic: gluten

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Crohns

text: Missing: Not provided

text: Index

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: human gut metagenome

text: UCSDMI

text: FALSE

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: true

text: Missing: Not provided

text: stool

text: human gut metagenome

text: Missing: Not provided

text: male

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Stool

text: Missing: Not provided

text: Missing: Not provided

text: false

text: never

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: No

text: No

text: Crohns

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Guiding longitudinal sampling in inflammatory bowel diseases cohorts

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided