text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

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characteristic: Submitter Id

text: Time 0 sample from individual AR02861

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text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

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characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

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tag: Namespace:NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: collection date

text: Time 9 sample from individual AR02861

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characteristic: geographic location (country and/or sea)

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characteristic: host health state

text: Homo sapiens

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

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characteristic: SRA accession

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text: Time 0 sample from individual AR03130

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

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text: Time 9 sample from individual AR03130

text: Ethiopia

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text: Homo sapiens

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text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR03165

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR03165

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

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characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR03204

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

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characteristic: SRA accession

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text: Time 9 sample from individual AR03204

text: Ethiopia

text: healthy

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text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR03399

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 9 sample from individual AR03399

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR03832

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 6 sample from individual AR03832

text: Ethiopia

text: healthy

text: Homo sapiens

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characteristic: isolation source

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR03835

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR03835

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR03878

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR03878

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

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characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR03920

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

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text: Neisseria meningitidis

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text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 8 sample from individual AR03920

text: Ethiopia

text: healthy

text: Homo sapiens

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text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR03921

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 7 sample from individual AR03921

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR03951

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR03951

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

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text: Neisseria meningitidis

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characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR03953

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR03953

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR04103

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR04103

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04160

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 8 sample from individual AR04160

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04215

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 9 sample from individual AR04215

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04242

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR04242

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR04263

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR04263

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR04284

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR04284

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04285

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 9 sample from individual AR04285

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04301

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 6 sample from individual AR04301

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04320

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR04320

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR04432

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR04432

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR04445

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR04445

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04563

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 9 sample from individual AR04563

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 2 sample from individual AR04609

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 9 sample from individual AR04609

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR04623

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR04623

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR04786

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR04786

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR04859

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR04859

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR05064

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 8 sample from individual AR05064

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR05068

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 8 sample from individual AR05068

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR05100

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR05100

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR05235

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR05235

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR05343

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR05343

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR05607

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 9 sample from individual AR05607

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR05679

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 9 sample from individual AR05679

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR05691

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR05691

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 0 sample from individual AR05692

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 9 sample from individual AR05692

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Time 0 sample from individual AR05896

characteristic: description

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 8 sample from individual AR05896

text: Ethiopia

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Time 0 sample from individual AR06000

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: serovar

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Time 8 sample from individual AR06000

text: Ethiopia

text: healthy

text: Homo sapiens

text: Oropharyngeal swab

text: Neisseria meningitidis

text: Neisseria meningitidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT DE BIOLOGIA EVOLUTIVA

text: public

tag: Namespace:INSTITUT DE BIOLOGIA EVOLUTIVA

text: ATCC 30224

characteristic: culture collection

text: Naegleria gruberi

text: Naegleria gruberi

text: Naegleria gruberi RNAseq


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: Senior research associate

text: public

tag: Namespace:Senior research associate

text: embryo

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: TDG -/- mouse embryonic stem cells were cultured on gelatinized plates in DMEM medium supplemented with 15% fetal bovine serum, 1% Penicillin Streptomycin, 1% MEM non-essential amino acids, 1% Glutamax, 50 μm β-mercaptoethanol and 103 U LIF, in normoxic conditions at 37°C. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Nuclei (mESC) were treated with NaCNBH3 (80mM) in PBS for 3h at 37°C. Nuclei were sonicated for 8 min on Covaris M220 using the truChIP Chromatin Shearing Kit (Covaris) following the manufactures guidelined. Protein denaturation was achieved using binding buffer containing a chaotropic agent (from Genejet PCR purification kit, Thermofisher) followed by 4x 450 μL water washes in the Amicon Ultra-Spin column (30kDa cutoff) to obtain sheared DNA fragments. DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline. For ChIP, 100 μL dynabeads M-280 sheep anti-rabbit IgG were washed and preincubated with 10 μg antibodies (Upstate 06597, ab18255, ab1791 and ab8227) in PBS/BSA for 3 h at 4°C. Beads were subsequently washed with PBS/BSA and DNA libraries together with 1 ug salmon sperm DNA were added to the beads and incubated overnight at 4°C. Beads were then washed (5 min rotation at room temperature) 6x with 500 μL LiCl buffer (100 mM TRIS pH7.4, 500 mM LiCl, 1% NP40, 1% sodium deoxycholate) and 3x tube changes. For elution, beads were incubated (15 min rotation at room temperature) with 2x 100 μL elution buffer (0.1 NaHCO3, 1% SDS). To the combined 200 μL supernatant were then added 8 μL of 5 M NaCl, 4 μL of TRIS pH 7.4, 2 μL of 0.5 M EDTA and 1 μL proteinase K (10 mg/mL), incubated at 45°C for 1 h and purified using the Genejet PCR purification kit.

characteristic: description

text: Tdg knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: Mus musculus

text: not available

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Senior research associate

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: Protocols: Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Genomic DNA was extracted from mouse embryonic tissues at 11.5 days using the DNeasy Blood & Tissue kit (Qiagen) Indexed DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline. Per indexed library, cytosine or fully modified 5mC, 5hmC or 5fC DNA was subsequently generated by PCR (25 cycles) using the Taq polymerase and dCtp, dmCtp, dhmCtp and dfCtp and purified by GeneJET PCR Purification Kit and eluted with ultra pure water to generate gDNA_C, gDNA_mC, gDNA_hmC and gDNA_fC input samples.

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Senior research associate

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Indexed DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline. Per indexed library, cytosine or fully modified 5mC, 5hmC or 5fC DNA was subsequently generated by PCR (25 cycles) using the Taq polymerase and dCtp, dmCtp, dhmCtp and dfCtp and purified by GeneJET PCR Purification Kit and eluted with ultra pure water to generate gDNA_C, gDNA_mC, gDNA_hmC and gDNA_fC input samples.

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed


text: Senior research associate

text: public

text: ArrayExpress

characteristic: broker name

text: Protocols: Modified synthetic DNA (Widom 601 sequence) was obtained by PCR and used for in vitro nucleosome reconstitution. For polymerase stop assay, reduced nucleosomes using either unmodified or 5fC (100%) modified Widom 601 sequence were obtained. Polymerase extension was achieved in the presence of dNTP (200 µM), primers (0.5 µM), 1 x polymerase buffer and DreamTaq (1 µL, 5U). The mixture was heated at 95 °C for 30 s, 60 °C for 60 s and 72° C for 3 min. After extension, the mixture was treated with Proteinase K (40 µg) in Proteinase K buffer (750 mM Gu-HCl, 5% Tween 20, 30mM EDTA, 30mM Tris-HCl), before purification by Oligo clean and concentrator Kit (Zymo Research). The samples were treated with RecJF (3 µL, 90U) for 12 h at 37 °C to remove excess primer and overhangs. The samples were again purified using the Oligo clean and concentrator Kit before DNA library preparation for sequencing. DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline.

characteristic: description

text: synthetic construct

text: synthetic construct

text: synthetic construct


text: Senior research associate

text: public

text: ArrayExpress

text: Protocols: Modified synthetic DNA (Widom 601 sequence) was obtained by PCR and used for in vitro nucleosome reconstitution. In vitro assembled nucleosomes were incubated with NaCNBH3 (100mM) in PBS for 16h at 37°C. For polymerase stop assay, reduced nucleosomes using either unmodified or 5fC (100%) modified Widom 601 sequence were obtained. Polymerase extension was achieved in the presence of dNTP (200 µM), primers (0.5 µM), 1 x polymerase buffer and DreamTaq (1 µL, 5U). The mixture was heated at 95 °C for 30 s, 60 °C for 60 s and 72° C for 3 min. After extension, the mixture was treated with Proteinase K (40 µg) in Proteinase K buffer (750 mM Gu-HCl, 5% Tween 20, 30mM EDTA, 30mM Tris-HCl), before purification by Oligo clean and concentrator Kit (Zymo Research). The samples were treated with RecJF (3 µL, 90U) for 12 h at 37 °C to remove excess primer and overhangs. The samples were again purified using the Oligo clean and concentrator Kit before DNA library preparation for sequencing. DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline.

text: synthetic construct

characteristic: organism

text: synthetic construct

text: synthetic construct


text: Senior research associate

text: public

text: embryonic day 11.5

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: TDG KO mice contain a deletion of the coding sequence for the catalytic domain of TDG, which is replaced by a neomycin-resistant cassette. Genotyping was carried out using DNA isolated from the yolk sac as template with the following primers:TDG KO/WT forward: 5′-GGGCAGCAAGGATCTGTCTA-3′TDG KO/WT reverse: 5′-GCCAGTTCCTCTGACACTTAGC-3′Mice were maintained as heterozygotes and intercrossed to generate homozygous knockout embryos for analysis. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. DNA was extracted by chloroform/ phenol extraction For native MNase sequencing, tissues obtained from mouse embryos were homogenized, washed with 5mL cold 1xPBS and pelleted at 300g at 4° C for 10 min. Cell pellet was resuspended in 500 µL of ice-cold NP40 lysis buffer (10 mM Tris-HCl pH7.4, 10 mM NaCl, 3 mM MgCl2, 0.5% Nonidet P-40, 0.15 mM spermine and 0.5 mM spermidine) and incubated on ice for 5 min. Nuclei were subsequently pelleted at 120g at 4° C for 10 min, washed with MNase digestion buffer (10 mM Tris-HCl pH 7.4, 15 mM NaCl, 60 mM KCl, 0.15 mM spermine and 0.5 mM spermidine) and resuspended in MNase digestion buffer containing 1 mM CaCl2. MNase (5 units) were added and the sample was incubated at room temperature for 5 min before the addition of MNase digestion buffer and MNase stop buffer (100 mM EDTA and 10 mM EGTA pH 7.5). Proteinase K and 20% SDS was added and the mixture was incubated at 37° C overnight. After chloroform/ phenol extraction, 2 µL of heat-treated RNase A (10 mg/ mL) was added to each sample and incubated at 37° C for 2 h. After another round of chloroform/ phenol extraction, the digested genomic DNA was obtained by ethanol precipitation. DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline.

text: Tdg knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Senior research associate

text: public

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: mixed

characteristic: sex


text: Senior research associate

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: Protocols: TDG KO mice contain a deletion of the coding sequence for the catalytic domain of TDG, which is replaced by a neomycin-resistant cassette. Genotyping was carried out using DNA isolated from the yolk sac as template with the following primers:TDG KO/WT forward: 5′-GGGCAGCAAGGATCTGTCTA-3′TDG KO/WT reverse: 5′-GCCAGTTCCTCTGACACTTAGC-3′Mice were maintained as heterozygotes and intercrossed to generate homozygous knockout embryos for analysis. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Genomic DNA was extracted from mouse embryonic tissues at 11.5 days using the DNeasy Blood & Tissue kit (Qiagen) For native MNase sequencing, tissues obtained from mouse embryos were homogenized, washed with 5mL cold 1xPBS and pelleted at 300g at 4° C for 10 min. Cell pellet was resuspended in 500 µL of ice-cold NP40 lysis buffer (10 mM Tris-HCl pH7.4, 10 mM NaCl, 3 mM MgCl2, 0.5% Nonidet P-40, 0.15 mM spermine and 0.5 mM spermidine) and incubated on ice for 5 min. Nuclei were subsequently pelleted at 120g at 4° C for 10 min, washed with MNase digestion buffer (10 mM Tris-HCl pH 7.4, 15 mM NaCl, 60 mM KCl, 0.15 mM spermine and 0.5 mM spermidine) and resuspended in MNase digestion buffer containing 1 mM CaCl2. MNase (5 units) were added and the sample was incubated at room temperature for 5 min before the addition of MNase digestion buffer and MNase stop buffer (100 mM EDTA and 10 mM EGTA pH 7.5). Proteinase K and 20% SDS was added and the mixture was incubated at 37° C overnight. After chloroform/ phenol extraction, 2 µL of heat-treated RNase A (10 mg/ mL) was added to each sample and incubated at 37° C for 2 h. After another round of chloroform/ phenol extraction, the digested genomic DNA was obtained by ethanol precipitation. DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline.

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: mixed


characteristic: ENA-LAST-UPDATE

text: Senior research associate

text: public

characteristic: Submitter Id

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: Protocols: TDG KO mice contain a deletion of the coding sequence for the catalytic domain of TDG, which is replaced by a neomycin-resistant cassette. Genotyping was carried out using DNA isolated from the yolk sac as template with the following primers:TDG KO/WT forward: 5′-GGGCAGCAAGGATCTGTCTA-3′TDG KO/WT reverse: 5′-GCCAGTTCCTCTGACACTTAGC-3′Mice were maintained as heterozygotes and intercrossed to generate homozygous knockout embryos for analysis. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. TDG KO mice contain a deletion of the coding sequence for the catalytic domain of TDG, which is replaced by a neomycin-resistant cassette. Genotyping was carried out using DNA isolated from the yolk sac as template with the following primers:TDG KO/WT forward: 5′-GGGCAGCAAGGATCTGTCTA-3′TDG KO/WT reverse: 5′-GCCAGTTCCTCTGACACTTAGC-3′Mice were maintained as heterozygotes and intercrossed to generate homozygous knockout embryos for analysis. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. DNA was extracted by chloroform/ phenol extraction For native MNase sequencing, tissues obtained from mouse embryos were homogenized, washed with 5mL cold 1xPBS and pelleted at 300g at 4° C for 10 min. Cell pellet was resuspended in 500 µL of ice-cold NP40 lysis buffer (10 mM Tris-HCl pH7.4, 10 mM NaCl, 3 mM MgCl2, 0.5% Nonidet P-40, 0.15 mM spermine and 0.5 mM spermidine) and incubated on ice for 5 min. Nuclei were subsequently pelleted at 120g at 4° C for 10 min, washed with MNase digestion buffer (10 mM Tris-HCl pH 7.4, 15 mM NaCl, 60 mM KCl, 0.15 mM spermine and 0.5 mM spermidine) and resuspended in MNase digestion buffer containing 1 mM CaCl2. MNase (5 units) were added and the sample was incubated at room temperature for 5 min before the addition of MNase digestion buffer and MNase stop buffer (100 mM EDTA and 10 mM EGTA pH 7.5). Proteinase K and 20% SDS was added and the mixture was incubated at 37° C overnight. After chloroform/ phenol extraction, 2 µL of heat-treated RNase A (10 mg/ mL) was added to each sample and incubated at 37° C for 2 h. After another round of chloroform/ phenol extraction, the digested genomic DNA was obtained by ethanol precipitation. DNA libraries were obtained by end repair, A-tailing and adapter ligation (NEBNext Ultra II DNA library Prep kit) following the manufacturer's guideline.

text: Tdg knockout

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed

characteristic: title


characteristic: External Id

text: Senior research associate

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed


text: Senior research associate

text: public

text: embryonic day 11.5

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed


text: Senior research associate

text: public

text: embryonic day 11.5

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: TDG KO mice contain a deletion of the coding sequence for the catalytic domain of TDG, which is replaced by a neomycin-resistant cassette. Genotyping was carried out using DNA isolated from the yolk sac as template with the following primers:TDG KO/WT forward: 5′-GGGCAGCAAGGATCTGTCTA-3′TDG KO/WT reverse: 5′-GCCAGTTCCTCTGACACTTAGC-3′Mice were maintained as heterozygotes and intercrossed to generate homozygous knockout embryos for analysis. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Tissues were collected from timed matings with the day of the copulation plug as E0.5. Embryos were dissected into hindbrain and heart. Total RNA for each sample was extracted using RNeasy mini kit (QIAGEN) and following the manufacturer’s instructions. For RNA-seq, total RNA for each sample was extracted using RNeasy mini kit (QIAGEN) and following the manufacturer’s instructions. Extracted RNA was polyA-enriched. Then, RNA was used for library preparation using the TruSeq RNA Library Prep Kit v2 (Illumina) following the manufacturer’s instructions.

text: Tdg knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Senior research associate

text: public

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: mixed


text: Senior research associate

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: Tdg knockout

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Senior research associate

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: embryonic day 11.5

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: mixed


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Centre of Biological Engineering (CEB) UMINHO

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Reactor with arabinose and glucose and without zeolites

characteristic: title


text: Centre of Biological Engineering (CEB) UMINHO

characteristic: INSDC first public

text: public

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Reactor with arabinose and glucose and with zeolites


text: public

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Reactor with glucose and without zeolites


text: public

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Reactor with glucose and with zeolites


text: public

tag: Namespace:Iowa State University Department of Animal Science

unit: day

text: Broiler

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

text: Protocols: In each replicate, birds were transferred at 17 days of age into pens within 4 temperature controlled chambers (2 for heat stress and 2 for thermoneutral). Both chicken lines (broiler and Fayoumi) were included in all 4 chambers. Birds were allowed to acclimate for 5 days at 25°C before the start of the treatment protocol. Birds were euthanized by intravenous injection of sodium pentobarbital (Fort Dodge Animal Health, Fort Dodge, IA). Tissue samples from the thymus were collected into RNAlater (Ambion, Inc., Austin, TX), perfused for 24 hours at room temperature, and then stored at -80°C to preserve the RNA. Birds from both lines (broiler and Fayoumi) were assigned to four treatments: Thermoneutral + Saline, Thermoneutral + LPS, Heat + Saline, and Heat + LPS. At 22 days of age, birds in the Heat groups were exposed to 35°C for 7 hours. Birds in the Thermoneutral groups remained at 25°C. At the midpoint of heat stress (3.5 hours), birds in the LPS groups were given a subcutaneous injection of lipopolysaccharide (100 µg of LPS/kg of body weight based on average weight for each line at day 21). Birds in the Saline groups were injected with an equivalent volume of phosphate buffered saline. Total RNA was isolated from each thymus sample using the RNAqueous Total RNA Isolation kit (Ambion, Inc., Austin, TX). Resulting RNA samples were DNase treated using the DNA-free DNA Removal kit (Ambion, Inc.). RNA quality was determined (all had RNA Integrity Score > 8.3) using the Eukaryote Total RNA Nano kit on the 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA). Individual cDNA libraries were constructed from 0.5 µg of total RNA/sample using the Illumina TruSeq RNA Library Preparation kit version 2 (Illumina, Inc., San Diego, CA). Quality of cDNA libraries was confirmed using the DNA 1000 kit on the 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

characteristic: description

text: disease

characteristic: disease

text: wild type genotype

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: female

text: 35 degrees celsius for 7 hours

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Iowa State University Department of Animal Science

characteristic: INSDC last update

text: public

characteristic: age

text: Broiler

text: ArrayExpress

text: chicken

text: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: thymus

characteristic: organism part

text: Gallus gallus

text: male

text: 35 degrees celsius for 7 hours


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Broiler

text: ArrayExpress

text: chicken

text: disease

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: female

characteristic: sex

text: 35 degrees celsius for 7 hours


characteristic: INSDC first public

text: public

text: Broiler

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: disease

characteristic: disease

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: female

text: 25 degrees celsius

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: age

text: Broiler

text: ArrayExpress

text: chicken

text: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: male

text: 25 degrees celsius

characteristic: temperature


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Fayoumi

text: ArrayExpress

text: chicken

text: disease

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: thymus

characteristic: organism part

text: Gallus gallus

text: female

text: 35 degrees celsius for 7 hours


characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Fayoumi

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

characteristic: description

text: disease

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: male

characteristic: sex

text: 35 degrees celsius for 7 hours


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: age

text: Fayoumi

text: ArrayExpress

text: chicken

text: disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: female

text: 25 degrees celsius

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Fayoumi

text: ArrayExpress

text: chicken

text: disease

text: wild type genotype

characteristic: individual

text: Gallus gallus

text: Gallus gallus

text: thymus

text: Gallus gallus

text: male

text: 25 degrees celsius

characteristic: temperature


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC first public

text: public

tag: Namespace:OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: Submitter Id

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: marine algal bloom

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: initial denaturation:95degC_3min;denaturation:95degC_15sec;annealing:55degC_15sec;elongation:72degC_2sec;final elongation:72degC_30sec;25 cycles

characteristic: pcr conditions

text: 341FWD:CCTACGGGNGGCWGCAG; 805R:GACTACHVGGGTATCTAATCC

characteristic: pcr primers

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Marine bacterioplankton diversity from DNA

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: oceanic mesopelagic zone biome

characteristic: environment (biome)

text: marine algal bloom

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: title

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

text: oceanic epipelagic zone biome

text: mesoscale marine eddy

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic mesopelagic zone biome

text: mesoscale marine eddy

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water

characteristic: water environmental package


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic mesopelagic zone biome

characteristic: environment (biome)

text: mesoscale marine eddy

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: initial denaturation:95degC_3min;denaturation:95degC_15sec;annealing:55degC_15sec;elongation:72degC_2sec;final elongation:72degC_30sec;30 cycles

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic mesopelagic zone biome

text: marine algal bloom

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: oceanic zone

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic mesopelagic zone biome

text: oceanic zone

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: title

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: marine algal bloom

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

text: Marine bacterioplankton diversity from cDNA

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic mesopelagic zone biome

text: marine algal bloom

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water

characteristic: water environmental package


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: mesoscale marine eddy

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic mesopelagic zone biome

text: mesoscale marine eddy

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: oceanic zone

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic mesopelagic zone biome

text: oceanic zone

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: title

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: marine algal bloom

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: Form ID FWD:GATGATGARAAYATTAACTC; Form ID REV:ATTTGDCCACAGTGDATACCA

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: rbcL

text: Marine phytoplankton diversity from DNA

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: oceanic epipelagic zone biome

text: mesoscale marine eddy

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: rbcL

characteristic: target gene

text: Marine phytoplankton diversity from DNA

text: water

characteristic: water environmental package


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: marine algal bloom

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: rbcL

text: Marine phytoplankton diversity from DNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: oceanic mesopelagic zone biome

text: marine algal bloom

text: sea water

text: Southern Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: rbcL

text: Marine phytoplankton diversity from DNA

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: mesoscale marine eddy

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: marine metagenome

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: rbcL

characteristic: target gene

text: Marine phytoplankton diversity from DNA

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: oceanic mesopelagic zone biome

text: mesoscale marine eddy

text: sea water

text: Southern Ocean

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: rbcL

text: Marine phytoplankton diversity from DNA

characteristic: title

text: water


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: oceanic epipelagic zone biome

characteristic: environment (biome)

text: mesoscale marine eddy

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

text: marine metagenome

characteristic: organism

characteristic: project name

text: CTD rosette: 24 Niskin bottles

characteristic: sample collection device or method

text: marine metagenome

text: Illumina Miseq

characteristic: sequencing method

text: rbcL

text: Marine phytoplankton diversity from RNA

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: oceanic epipelagic zone biome

text: marine algal bloom

text: sea water

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: marine metagenome

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: rbcL

characteristic: target gene

text: Marine phytoplankton diversity from RNA

text: water

characteristic: water environmental package


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: oceanic mesopelagic zone biome

characteristic: environment (biome)

text: marine algal bloom

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: CTD rosette: 24 Niskin bottles

text: marine metagenome

text: Illumina Miseq

text: rbcL

text: Marine phytoplankton diversity from RNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University Hospital Galway

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Ruiru

characteristic: organism

text: Ruiru

characteristic: serovar

text: Subsp. I

characteristic: sub species


text: University Hospital Galway

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Weltevreden

text: Weltevreden

text: Subsp. I


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

text: Subsp. I

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Umbilo

text: Umbilo

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Oranienburg

text: Oranienburg

text: Subsp. I


text: CORNELL UNIVERSITY

text: public

tag: Namespace:CORNELL UNIVERSITY

text: human

characteristic: common name

text: feces

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

text: 42.443961 N DD

characteristic: geographic location (latitude)

text: 76.501881 W DD

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CORNELL UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: feces

text: feces

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: 40.7127 N�DD

text: 74.0059 W�DD

text: human-gut

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT DE BIOLOGIA EVOLUTIVA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Trichoplax adhaerens

text: Trichoplax adhaerens

text: Transcriptome of Trichoplax adhaerens


text: INSTITUT DE BIOLOGIA EVOLUTIVA

text: public

text: Sphaeroforma arctica JP610

text: Sphaeroforma arctica JP610

text: Transcriptome of Sphaeroforma arctica


text: Helicobacter pylori

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Helicobacter pylori

characteristic: common name

text: Helicobacter pylori

text: Helicobacter pylori

characteristic: subject id


Cupriavidus taiwanensis LMG 19426

characteristic: ENA-CHECKLIST

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis LMG 19426

tag: Namespace:INSTITUT PASTEUR

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis LMG 19426


Cupriavidus taiwanensis LMG 19430

characteristic: ENA-FIRST-PUBLIC

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis LMG 19430

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis LMG 19430


Cupriavidus taiwanensis STM 3511

text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

text: Cupriavidus taiwanensis STM 3511

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 3511


Cupriavidus taiwanensis STM 3521

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 3521

characteristic: Submitter Id

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 3521


Cupriavidus taiwanensis STM 3679

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 3679

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 3679


Cupriavidus taiwanensis STM 3681

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 3681

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 3681


Cupriavidus taiwanensis STM 3711

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 3711

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 3711


Cupriavidus taiwanensis STM 6021

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6021

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6021


Cupriavidus taiwanensis STM 6032

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6032

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6032


Cupriavidus taiwanensis STM 6041

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6041

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6041


Cupriavidus taiwanensis STM 6043

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6043

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6043


Cupriavidus taiwanensis STM 6044

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6044

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6044


Cupriavidus taiwanensis STM 6132

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6132

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6132


Cupriavidus taiwanensis STM 6162

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6162

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6162


Cupriavidus taiwanensis STM 6117

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6117

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6117


Cupriavidus taiwanensis STM 6083

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6083

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6083


Cupriavidus taiwanensis STM 6150

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6150

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6150


Cupriavidus taiwanensis STM 6116

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6116

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6116


Cupriavidus taiwanensis STM 6119

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 6119

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 6119


Cupriavidus taiwanensis STM 8555

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8555

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8555


Cupriavidus taiwanensis STM 8556

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8556

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8556


Cupriavidus taiwanensis STM 8557

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8557

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8557


Cupriavidus taiwanensis STM 8558

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8558

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8558


Cupriavidus taiwanensis STM 8560

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8560

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8560


Cupriavidus taiwanensis STM 8561

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8561

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8561


Cupriavidus taiwanensis STM 8564

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8564

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8564


Cupriavidus taiwanensis STM 8565

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis STM 8565

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis STM 8565


Cupriavidus taiwanensis ip2.30/pp 2.30

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis ip2.30/pp 2.30

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis ip2.30/pp 2.30


Cupriavidus taiwanensis mpp 1.3

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis mpp 1.3

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis mpp 1.3


Cupriavidus taiwanensis mpp 1.1

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis mpp 1.1

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis mpp 1.1


Cupriavidus taiwanensis TPIG 6a

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis TPIG 6a

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis TPIG 6a


Cupriavidus taiwanensis TPUD 27.6

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis TPUD 27.6

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis TPUD 27.6


Cupriavidus taiwanensis MAPUD 10.1

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis MAPUD 10.1

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis MAPUD 10.1


Cupriavidus taiwanensis cmp 52

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis cmp 52

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis cmp 52


Cupriavidus taiwanensis SWF 66322

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis SWF 66322

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis SWF 66322


Cupriavidus taiwanensis SWF 66324

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis SWF 66324

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis SWF 66324


Cupriavidus taiwanensis SWF 65033

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis SWF 65033

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis SWF 65033


Cupriavidus taiwanensis LMG 19425

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis LMG 19425

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis LMG 19425


Cupriavidus taiwanensis LMG 19431

text: INSTITUT PASTEUR

text: public

text: Cupriavidus taiwanensis LMG 19431

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis LMG 19431


Cupriavidus oxalaticus LMG 2235

text: INSTITUT PASTEUR

text: public

text: Cupriavidus oxalaticus LMG 2235

text: Cupriavidus oxalaticus

text: Cupriavidus oxalaticus

text: Cupriavidus oxalaticus LMG 2235


Cupriavidus sp. LMG 19464

text: INSTITUT PASTEUR

text: public

text: Cupriavidus sp. LMG 19464

text: Cupriavidus taiwanensis

text: Cupriavidus taiwanensis

text: Cupriavidus sp. LMG 19464


E-MTAB-6257:Sample 1

text: PDRA bioinformatician

text: public

text: E-MTAB-6257:Sample 1

tag: Namespace:PDRA bioinformatician

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: 6 week old plant- Arabidopsis plants were grown under long day conditions (16 hours light/8 hours dark, at 150 mols light intensity) at 20 degrees celsius. Collect flower buds at floral stage 9, snap freeze the tubes of buds in liquid nitrogen and store the tubes at -80 degree until further use. MNase treatment to chromatins MNase treatment to chromatins, TrueSeq Nano DNA Library Prep Kit (Illumina). Micrococcal nuclease digestion and sequencing library construction were performed as reported (Choi et al., 2016). For ChIP two grams of unopened floral buds were ground in liquid nitrogen. Nuclei were isolated and in vitro cross-linked in nuclear isolation crosslinking buffer (60 mM Hepes pH 8.0, 1 M sucrose, 5 mM KCl, 5 mM MgCl2, 5 mM EDTA, 0.6% Triton X-100, 0.4 mM PMSF, 1 ug pepstatin, 1×protein inhibitor cocktails, 1% formaldehyde) at room temperature for 25 minutes. Glycine was added to a final concentration of 125 mM and incubated for 25 minutes at room temperature with rotation. Cross-linked bud lysate was filtered through 1 layer of Miracloth and centrifuged at 2,000g at 4°C for 20 minutes. The pellet was resuspended in extraction buffer (0.25 M sucrose, 10 mM Tris-HCl pH 8.0, 10 mM MgCl2, 1% Triton X-100, 1 mM EDTA, 5 mM β-mercaptoethanol, 0.1 mM PMSF, 1×proteinase inhibitor cocktails) and centrifuged at 2,000g at 4°C for 15 minutes. The nuclei pellet was rinsed with 1 ml of TNE buffer (10 mM Tris-HCl pH 8.0, 10 mM NaCl, 1 mM EDTA, 1×proteinase inhibitor cocktails), resuspended and then centrifuging at 2,000g at 4°C for 5 minutes. Cross-linked chromatin was digested with 0.05 units of mirococcal nuclease (MNase, NEB M0247S) in reaction buffer (10 mM Tris-HCl, pH 8.0, 10 mM NaCl, 1 mM EDTA, 4 mM CaCl2) at 37°C for 15 minutes with vortexing. The reaction was stopped by adding EDTA to a final concentration of 20 mM, vortexing and placing on ice for 10 minutes. One volume of 10 mM Tris-pH 8, 0.2% SDS, 2% Triton X-100, 0.2% sodium deoxycholate, 1×proteinase inhibitor cocktails was added and rotated for 2 hours at 4°C. The reactions were centrifuged at 14,000g in a microfuge for 5 minutes at 4°C. DNA was purified by phenol/chlorophorm/isoamyl alcohol (24:24:1) extraction, followed by ethanol precipitation and 2% agarose gel separtion and gel extraction of ~145-150 bp DNA. phenol chloroform extraction, gel extraction of mononuclesomal DNAs. Approximately 10 ng of purified DNA was used to generate a library using the TruSeq prep kit v2 (Illumina).

characteristic: description

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

characteristic: organism part

text: Arabidopsis thaliana

text: November 2016

characteristic: time

text: Sample 1


E-MTAB-6257:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6257:Sample 2

text: ArrayExpress

text: thale cress

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: flower bud

text: Arabidopsis thaliana

text: November 2016

text: Sample 2

characteristic: title


E-MTAB-6257:Sample 3

characteristic: ENA-CHECKLIST

text: PDRA bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6257:Sample 3

text: ArrayExpress

text: thale cress

characteristic: common name

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

text: Arabidopsis thaliana

text: November 2016

text: Sample 3


E-MTAB-6257:Sample 4

characteristic: ENA-FIRST-PUBLIC

text: PDRA bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6257:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

text: Arabidopsis thaliana

text: November 2016

text: Sample 4


E-MTAB-6257:Sample 5

text: PDRA bioinformatician

text: public

text: E-MTAB-6257:Sample 5

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

text: Arabidopsis thaliana

text: September 2015

text: Sample 5


E-MTAB-6257:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA bioinformatician

text: public

text: E-MTAB-6257:Sample 6

text: ArrayExpress

text: thale cress

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

characteristic: organism part

text: Arabidopsis thaliana

text: September 2015

characteristic: time

text: Sample 6


T0 A

text: THE UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: T0 A

tag: Namespace:THE UNIVERSITY OF WARWICK

characteristic: collection date

text: Unamended sediment, time point 0, replicate A

text: Saltmarsh

characteristic: environment (biome)

text: Pool

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment metagenome

characteristic: organism

text: Stiffkey choline SIP

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: 13C choline DNA SIP of Stiffkey saltmarsh sediment

characteristic: title


T0 B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: T0 B

characteristic: Submitter Id

text: Unamended sediment, time point 0, replicate B

characteristic: description

text: Saltmarsh

text: Pool

text: Sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

text: Stiffkey choline SIP

text: sediment metagenome

text: sediment

text: Illumina MiSeq


T0 C

text: THE UNIVERSITY OF WARWICK

characteristic: INSDC first public

text: public

text: T0 C

characteristic: collection date

text: Unamended sediment, time point 0, replicate C

text: Saltmarsh

characteristic: environment (biome)

text: Pool

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: Stiffkey choline SIP

text: sediment metagenome

text: sediment

text: Illumina MiSeq


T3 D light

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WARWICK

text: public

text: T3 D light

text: Time point 3, replicate D, light fraction

text: Saltmarsh

text: Pool

text: Sediment

text: United Kingdom

text: metagenome

characteristic: investigation type

text: sediment metagenome

characteristic: organism

text: Stiffkey choline SIP

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title


T3 G light

text: THE UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: T3 G light

characteristic: Submitter Id

characteristic: collection date

text: Time point 3, replicate G, light fraction

characteristic: description

text: Saltmarsh

characteristic: environment (biome)

text: Pool

characteristic: environment (feature)

text: Sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

text: Stiffkey choline SIP

text: sediment metagenome

text: sediment

text: Illumina MiSeq


T3 H light

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WARWICK

text: public

text: T3 H light

text: Saltmarsh

text: Pool

text: Sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: Stiffkey choline SIP

text: sediment metagenome

text: sediment

text: Illumina MiSeq


T3 D heavy

text: THE UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: T3 D heavy

text: Time point 3, replicate D, heavy fraction

text: Saltmarsh

text: Pool

text: Sediment

text: United Kingdom

text: metagenome

characteristic: investigation type

text: sediment metagenome

characteristic: organism

text: Stiffkey choline SIP

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title


T3 G heavy

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WARWICK

text: public

characteristic: SRA accession

text: T3 G heavy

characteristic: Submitter Id

characteristic: collection date

text: Time point 3, replicate G, heavy fraction

characteristic: description

text: Saltmarsh

characteristic: environment (biome)

text: Pool

characteristic: environment (feature)

text: Sediment

text: United Kingdom

text: metagenome

text: sediment metagenome

text: Stiffkey choline SIP

text: sediment metagenome

text: sediment

text: Illumina MiSeq


T3 H heavy

text: THE UNIVERSITY OF WARWICK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: T3 H heavy

text: Time point 3, replicate H, heavy fraction

text: Saltmarsh

text: Pool

text: Sediment

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: sediment metagenome

text: Stiffkey choline SIP

text: sediment metagenome

text: sediment

text: Illumina MiSeq


T3 D light2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WARWICK

text: public

text: T3 D light2

text: Time point 3, replicate D, light fraction, repeat 2

text: Saltmarsh

text: Pool

text: Sediment

text: United Kingdom

text: metagenome

characteristic: investigation type

text: sediment metagenome

characteristic: organism

text: Stiffkey choline SIP

characteristic: project name

text: sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title