text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

text: temperate woodland biome

text: temperate deciduous broadleaf forest

characteristic: environment (feature)

text: lichen

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Kesselfalklamm

characteristic: geographic location (region and locality)

text: Cyanolichen

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: symbiont metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: MALICA

characteristic: project name

text: symbiont metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Lichen associated bacterial communities


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: Submitter Id

characteristic: collection date

text: ocean biome

characteristic: environment (biome)

text: marine supra-littoral zone

text: lichen

text: France

unit: DD

text: Banyuls sur mer

text: Cyanolichen

text: host-associated

text: mimarks-survey

text: symbiont metagenome

characteristic: organism

text: initial denaturation:95degC_3min;denaturation:95degC_15sec;annealing:55degC_15sec;elongation:72degC_2sec;final elongation:72degC_30sec;25 cycles

text: 341FWD:CCTACGGGNGGCWGCAG; 805R:GACTACHVGGGTATCTAATCC

text: MALICA

text: symbiont metagenome

text: Illumina Miseq

text: 16S rRNA

characteristic: target subfragment

unit: ºC

characteristic: temperature

text: Lichen associated bacterial communities

characteristic: title


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

text: ocean biome

text: marine sub-littoral zone

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Erquy, Brittany

characteristic: geographic location (region and locality)

text: seawater

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: seawater metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: MALICA

characteristic: project name

text: seawater metagenome

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Marine bacterioplankton communities


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institue for Developmental Biology

characteristic: Submitter Id

text: Allodiplogaster sp. RGD228

characteristic: organism

text: Allodiplogaster sp. RGD228


text: Max Planck Institue for Developmental Biology

text: public

text: Allodiplogaster sp. RGD228

text: Allodiplogaster sp. RGD228

characteristic: title


text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

text: Product HM-782D from BEI Resources contains genomic DNA from 20 bacterial strains containing equimolar (Even) ribosomal RNA operon counts (100,000 copies per organism per μL.

characteristic: description

text: synthetic metagenome

text: synthetic metagenome

text: Microbial Mock Community B (Even, Low Concentration), v5.1L


text: NETHERLANDS CANCER INSTITUTE

text: public

tag: Namespace:NETHERLANDS CANCER INSTITUTE

text: Blood

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: WXS of mouse DNA using a human enrichment kit

type: has member


text: Plasmid

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: Plasmid

characteristic: phenotype

text: Mus musculus

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute.

text: public

tag: Namespace:Cancer Research UK Cambridge Institute.

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

text: house mouse

text: Protocols: We derived twelve independent stable lines of mouse embryonic fibroblasts (MEF) from six wildtype and six CTCF-hemizygous mouse E13.5 embryos. Total RNA from each MEF line was purified using QIAzol Lysis Reagent (Qiagen) following manufacturer's instructions; DNase treatment and removal was performed using the TURBO DNA-freeTM Kit (Ambion, Life Technologies) according to the manufacturer's instructions. Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina).

text: embryonic day 13.5

characteristic: developmental stage

text: heterozygous Ctcf knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: External Id

text: Cancer Research UK Cambridge Institute.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: embryonic day 13.5

text: heterozygous Ctcf knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: male


text: Cancer Research UK Cambridge Institute.

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: embryonic day 13.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute.

text: public

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

text: house mouse

text: embryonic day 13.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female


text: Cancer Research UK Cambridge Institute.

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Protocols: MEFs were fixed in DMEM containing 1% fresh formaldehyde and incubated at room temperature for 10 min, quenched with 250mM glycine for 10 min, and washed twice with ice cold PBS, before being flash-frozen at -80°C. Cross-linked cells were lysed and sonicated on a Bioruptor Plus (Diagenode) sonicator to fragment chromatin to an average length of 300bp. Immunoprecipitated DNA or 50 ng of input DNA was used for library preparation using the ThruPLEX DNA-Seq library preparation protocol (Rubicon Genomics, UK).

text: embryonic day 13.5

characteristic: developmental stage

text: heterozygous Ctcf knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: External Id

text: Cancer Research UK Cambridge Institute.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: embryonic day 13.5

text: heterozygous Ctcf knockout

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: Cancer Research UK Cambridge Institute.

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

text: embryonic day 13.5

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute.

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: description

text: embryonic day 13.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: title


text: UFPA

text: public

text: human

text: miRNome of leprosy patients

text: Illumina TrueSeq SmallRNA

characteristic: library preparation kit

text: small ncRNA sequencing

characteristic: library type

text: Homo sapiens

text: Homo sapiens

text: Blood

characteristic: tissue type

text: Leprosy Host mirNome


characteristic: External Id

text: UFPA

characteristic: INSDC center name

text: public

text: human

text: miRNome of leprosy patients

text: Leprosy

text: TT

text: Illumina TrueSeq SmallRNA

text: small ncRNA sequencing

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Leprosy Host mirNome


text: UFPA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: miRNome of leprosy patients

text: Leprosy

text: LL

text: Illumina TrueSeq SmallRNA

text: small ncRNA sequencing

text: Homo sapiens

text: Homo sapiens

text: Blood

text: Leprosy Host mirNome


text: UFPA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: miRNome of leprosy patients

text: Leprosy

text: TT

text: Illumina TrueSeq SmallRNA

text: small ncRNA sequencing

text: Homo sapiens

text: Homo sapiens

text: skin

text: Leprosy Host mirNome


text: UFPA

text: public

characteristic: Submitter Id

text: human

text: miRNome of leprosy patients

text: Leprosy

text: LL

text: Illumina TrueSeq SmallRNA

text: small ncRNA sequencing

text: Homo sapiens

text: Homo sapiens

text: skin

text: Leprosy Host mirNome


text: UFPA

text: public

text: human

characteristic: common name

text: miRNome of leprosy patients

text: Illumina TrueSeq SmallRNA

text: small ncRNA sequencing

text: Homo sapiens

text: Homo sapiens

text: skin

text: Leprosy Host mirNome


text: James Hutton Institute

text: public

tag: Namespace:James Hutton Institute

text: potato

text: Desiree

characteristic: cultivar

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

characteristic: organism

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: James Hutton Institute

text: public

text: potato

text: Desiree A01-20

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


characteristic: ENA-LAST-UPDATE

text: James Hutton Institute

text: public

text: potato

text: Desiree A02-33

text: genomic DNA enriched for NBS-LRR genes

characteristic: description

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A04-33

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics

characteristic: title


text: James Hutton Institute

text: public

text: potato

text: Desiree A14-81

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A23-29

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A25-11

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A31-47

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A56-27

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A73-1-11

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A74-8-14

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: James Hutton Institute

text: public

text: potato

text: Desiree A106-15

text: genomic DNA enriched for NBS-LRR genes

text: Solanum tuberosum

text: Solanum tuberosum

text: leaf

text: dRenSeq in transgenics


text: Animal and Plant Health Agency (APHA)

text: public

tag: Namespace:Animal and Plant Health Agency (APHA)

text: APHA

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

characteristic: serovar

text: Salmonella isolate


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

text: No

text: United Kingdom

text: not provided

text: Gallus Gallus

text: Yes

characteristic: organism

text: Typhimurium

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

text: not provided

text: Meleagris

text: Yes

text: Typhimurium

text: Salmonella isolate

characteristic: title


text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

text: No

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Typhimurium

text: Salmonella isolate


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: APHA

text: No

text: United Kingdom

text: not provided

text: Ovis aries

text: Yes

text: Typhimurium

characteristic: serovar

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

characteristic: Submitter Id

text: APHA

characteristic: collected by

characteristic: collection date

text: No

text: United Kingdom

text: not provided

text: Canis

text: Yes

characteristic: organism

text: Typhimurium

text: Salmonella isolate


text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Phasianus colchicus

characteristic: host scientific name

text: Yes

text: Typhimurium

text: Salmonella isolate

characteristic: title


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: APHA

text: No

text: United Kingdom

text: not provided

text: Equus caballus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Typhimurium

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

characteristic: collected by

text: No

text: United Kingdom

text: not provided

text: Columba palumbus

text: Yes

text: Typhimurium

characteristic: serovar

text: Salmonella isolate


text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Fringillidae

text: Yes

characteristic: organism

text: Typhimurium

text: Salmonella isolate


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: APHA

text: No

text: United Kingdom

text: not provided

text: Excalfactoria chinensis

characteristic: host scientific name

text: Yes

text: Typhimurium

text: Salmonella isolate

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

text: No

text: United Kingdom

text: not provided

text: Phasianidae

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Typhimurium

text: Salmonella isolate


text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Equus caballus

text: Yes

text: typhimurium

characteristic: serovar

text: Salmonella isolate


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: APHA

text: No

text: United Kingdom

text: not provided

characteristic: host health state

text: Sus domesticus

text: Yes

characteristic: organism

text: typhimurium

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

text: No

text: United Kingdom

text: not provided

text: Canis

characteristic: host scientific name

text: Yes

text: Salmonella isolate

characteristic: title


text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus domesticus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella isolate


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: APHA

text: No

text: United Kingdom

characteristic: geographic location (longitude)

text: not provided

text: Bos taurus

text: Yes

characteristic: serovar

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

text: No

text: United Kingdom

text: not provided

characteristic: host health state

text: Equus caballus

text: Yes

characteristic: organism

text: Salmonella isolate


text: Animal and Plant Health Agency (APHA)

text: public

text: APHA

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Felis catus

characteristic: host scientific name

text: Yes

text: Salmonella isolate

characteristic: title


characteristic: External Id

text: Animal and Plant Health Agency (APHA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: APHA

text: No

text: United Kingdom

text: not provided

text: Gallus Gallus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency (APHA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: APHA

text: No

text: United Kingdom

characteristic: geographic location (longitude)

text: not provided

text: Eublepharis macularius

text: Yes

characteristic: serovar

text: Salmonella isolate


text: AIT

text: public

characteristic: collection date

text: Multidrug resistant Acinetobacter baumannii isolated from a urinary bladder tumour

characteristic: description

text: Bosnia and Herzegovina

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

text: Urine

characteristic: isolation source

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: MDR resistant isolate from Bosnia and Hercegovina


characteristic: External Id

text: Melanoma Institute Australia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Melanoma Institute Australia

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH INSTITUT

text: public

characteristic: INSDC status

tag: Namespace:ROBERT KOCH INSTITUT

text: sooty mangabey

text: fecal sample

text: Tropical rain forest primate gut

characteristic: environment (biome)

text: Gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Cote d'Ivoire

characteristic: geographic location (latitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Cercocebus atys

text: Hunting captures more than prey: evidence for microbiome assimilation by chimpanzees

characteristic: project name

text: Cercocebus atys

text: Illumina

characteristic: sequencing method


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: We derived independent stable lines of mouse embryonic fibroblasts (MEF) from wildtype and CTCF-hemizygous mouse E13.5 embryos. For three biological replicates, cells were fixed in DMEM containing 2% fresh formaldehyde and incubated at room temperature for 10 min, quenched with 1M glycine for 5 min, and washed twice with ice cold PBS, before being flash-frozen at -80°C. Cross-linked cells were lysed, followed by chromatin HindIII digestion, biotinylataion, ligation, proteinase K treatment, DNA purification, sonication, end repair and biotin pull-down. Pulled-down DNA had adapters ligated and material was PCR amplified.

characteristic: description

text: embryonic day 13.5

characteristic: developmental stage

text: heterozygous Ctcf knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: External Id

text: Cancer Research UK Cambridge Institute.

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: embryonic day 13.5

text: heterozygous Ctcf knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: embryonic day 13.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: PHE

text: public

text: 7C ST177 investigation

characteristic: description

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Mycobacterium abscessus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Mycobacterium abscessus

characteristic: common name

text: Mycobacterium abscessus

text: Mycobacterium abscessus

characteristic: subject id


text: gut metagenome

text: SC

text: public

text: gut metagenome

text: gut metagenome

text: gut metagenome


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: human


text: Lung Cell-line

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Oral Cell-line

text: Homo sapiens

characteristic: External Id

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Colorectal

text: male

characteristic: ArrayExpress-Sex

text: Homo sapiens

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens


text: Cell Line

text: Homo sapiens

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Netherlands

characteristic: geo loc name

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Netherlands

text: Netherlands

text: not provided

text: Homo sapiens

text: Yes

text: Human

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Netherlands

characteristic: geo loc name

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: chicken meat

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: IZSLT

text: No

text: Netherlands

text: Netherlands

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: animal feed

characteristic: isolation source non-host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Netherlands

text: Netherlands

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: Animal

characteristic: isolation source host associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Netherlands

characteristic: geo loc name

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: Animal

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: Bos taurus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Animal

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

type: AMR curated data - CABBAGE

value: tetracycline

value: EUCAST

value: broth dilution

value: mg/L

value: resistant

value: Escherichia coli

value: ceftazidime

value: trimethoprim

value: ciprofloxacin

value: meropenem

value: susceptible

value: sulfamethoxazole

value: gentamicin

value: ampicillin

value: cefotaxime

value: colistin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

text: Animal

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: tigecycline

value: chloramphenicol

value: nalidixic acid


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

characteristic: geo loc name

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Bos taurus

text: Yes

text: Animal

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: EUCAST

value: broth dilution


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IZSLT

text: No

text: Netherlands

text: Netherlands

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: layer

characteristic: isolation source non-host-associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: Human

characteristic: isolation source host associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: broiler

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium, monophasic

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: broiler

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Salmonella enterica

text: Salmonella enterica

text: Bredeney

characteristic: serovar

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: meat from turkey

characteristic: isolation source host associated

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Blockley


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: broiler

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Luxembourg

text: Luxembourg

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Luxembourg

text: Luxembourg

text: No

text: cordon bleu

characteristic: isolation source non-host-associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Luxembourg

characteristic: geo loc name

text: Luxembourg

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: meat from pork

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Luxembourg

text: Luxembourg

text: not provided

text: Gallus gallus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: chicken wing

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Luxembourg

characteristic: geo loc name

text: Luxembourg

text: not provided

text: Gallus gallus

text: Yes

text: raw chicken

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: fattening pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: typhimurium monophasic


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Gallus gallus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: herd

text: Salmonella enterica

text: Salmonella enterica

text: typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

text: Sus scrofa

text: Yes

text: 140704324 (14074324)

text: meat from pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: typhimurium monophasic

text: 140704324 (14074324)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: fattening pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Ireland

text: Ireland

text: not provided

text: Anas platyrhynchos

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Duck meat

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Ireland

characteristic: geo loc name

text: Ireland

text: not provided

text: Gallus gallus

text: Yes

text: broiler meat

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: IZSLT

text: No

text: Ireland

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: pig meat

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Ireland

text: Ireland

text: not provided

text: Anas platyrhynchos

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: duck meat

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Ireland

characteristic: geo loc name

text: Ireland

text: No

text: fertilizer/ feed additive

characteristic: isolation source non-host-associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IZSLT

text: No

text: Ireland

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: fertilizer

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: IZSLT

text: No

text: Ireland

text: Ireland

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: water purification

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geo loc name

text: Poland

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

text: chicken

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IZSLT

text: No

text: Poland

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

text: Yes

text: turkey

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Infantis


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Poland

text: Poland

text: not provided

text: Sus scrofa

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: swine

text: Salmonella enterica

text: Salmonella enterica

text: Infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: fattening pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Bos taurus

text: Yes

text: calves

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: typhimurium monophasic


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Bos taurus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: calves

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: fattening pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: typhimurium monophasic


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening flock

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: typhimurium monophasic


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Sus scrofa

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: meat from pig

text: Salmonella enterica

text: Salmonella enterica

text: typhimurium monophasic

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening flock

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Sus scrofa

text: Yes

text: meat from pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Bos taurus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: meat from bovine

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

text: meat from broiler

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: Animal

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: infantis


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Homo sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

text: Salmonella enterica

text: Salmonella enterica

text: infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ITA

text: DTU2016-417-PRJPatricia-Salmonella-newport-14038647_S17_L001

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Salmonella

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Salmonella enterica

text: Salmonella enterica

text: Newport

value: mg/L

value: resistant

value: Salmonella enterica

value: tetracycline


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-418-PRJPatricia-Salmonella-typhimurium-monophasic-266599_S18_L001

text: IZSLT

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Sus scrofa

text: Yes

text: fattening turkey

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Typhimurium monophasic


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: DTU2016-419-PRJPatricia-Salmonella-typhimurium-322192_S19_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

text: Italy

text: not provided

text: Sus scrofa

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: DTU2016-408-PRJPatricia-Escherichia-coli-14065450_S8_L001

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: Escherichia coli

value: ciprofloxacin

value: trimethoprim

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: ITA

characteristic: SRA accession

text: DTU2016-410-PRJPatricia-Escherichia-coli-14077295_S10_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: susceptible

value: sulfamethoxazole

value: gentamicin


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: DTU2016-415-PRJPatricia-Salmonella-typhimurium-14043372_S15_L001

text: IZSLT

text: No

characteristic: environmental sample

text: Salmonella

characteristic: genus

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Slaughterhouse

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain

value: ampicillin

value: colistin

value: cefotaxime

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: ITA

characteristic: SRA accession

text: DTU2016-416-PRJPatricia-Salmonella-blockley-14085183_S16_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Salmonella

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Salmonella enterica

text: Salmonella enterica

text: Blockley

value: nalidixic acid

value: EUCAST

value: tigecycline

value: chloramphenicol


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: DTU2016-401-PRJPatricia-Escherichia-coli-14043377_S1_L001

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: broth dilution

value: mg/L

value: resistant


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016-421-PRJPatricia-Salmonella-typhimurium-monophasic-15073893_S21_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium

characteristic: serovar

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DTU2016-420-PRJPatricia-Salmonella-schwarzengrund-195217_S20_L001

text: IZSLT

text: No

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Schwarzengrund


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: DTU2016-414-PRJPatricia-Escherichia-coli-14055747_S14_L001

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: SRA accession

text: DTU2016-413-PRJPatricia-Escherichia-coli-14069277_S13_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: DTU2016-409-PRJPatricia-Escherichia-coli-14067330_S9_L001

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: Escherichia coli

value: ciprofloxacin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ITA

text: DTU2016-403-PRJPatricia-Escherichia-coli-14085180_S3_L001

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: tetracycline

value: ceftazidime


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

text: DTU2016-405-PRJPatricia-Escherichia-coli-14053473_S5_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: susceptible

value: sulfamethoxazole


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ITA

text: DTU2016-406-PRJPatricia-Escherichia-coli-14060900_S6_L001

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: ampicillin

value: gentamicin

value: trimethoprim


characteristic: ENA-CHECKLIST

text: IZSLT (Istituto Zooprofilattico Sperimentale del Lazio e la Toscana)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: DTU2016-412-PRJPatricia-Escherichia-coli-14083136_S12_L001

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: meropenem

value: cefotaxime


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ITA

characteristic: SRA accession

text: DTU2016-404-PRJPatricia-Escherichia-coli-14047606_S4_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: EUCAST

value: nalidixic acid


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

text: DTU2016-407-PRJPatricia-Escherichia-coli-14062104_S7_L001

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: fattening turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: tigecycline

value: colistin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: ITA

text: DTU2016-411-PRJPatricia-Escherichia-coli-14057877_S11_L001

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: chloramphenicol

value: broth dilution

value: mg/L


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

text: DTU2016-402-PRJPatricia-Escherichia-coli-14045775_S2_L001

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: fattening turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: resistant

value: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

text: IZSLT

text: No

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: meat

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: infantis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus

text: Yes

text: broiler chicken

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: infantis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: infantis

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: IZSLT

text: No

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Yes

text: Human

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: infantis

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: meat

characteristic: isolation source non-host-associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: infantis


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

text: Sus scrofa

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: meat from pig

text: Salmonella enterica

text: Salmonella enterica

text: infantis

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

text: meat from bovine

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: IZSLT

text: No

characteristic: environmental sample

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Sus scrofa

text: Yes

text: meat from pig

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

text: not provided

text: Gallus gallus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Meat from broiler chicken

text: Salmonella enterica

text: Salmonella enterica

text: infantis

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collection date

text: No

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

text: broiler

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: infantis


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: IZSLT

text: No

characteristic: environmental sample

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: infantis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collected by

text: No

text: Escherichia

characteristic: genus

text: Italy

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: tetracycline

value: ceftazidime


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ITA

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: caecum turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: susceptible

value: sulfamethoxazole

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

text: No

characteristic: environmental sample

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Sus scrofa

text: Yes

text: pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: infantis

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ITA

text: IZSLT

characteristic: collected by

text: No

text: Escherichia

characteristic: genus

text: Italy

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: ampicillin


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: caecum turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: gentamicin

value: meropenem


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: IZSLT

characteristic: collected by

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Meleagris gallopavo

text: Yes

text: caecum turkey

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: infantis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

characteristic: genus

text: Italy

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: EUCAST

value: trimethoprim

value: cefotaxime


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ITA

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: caecum turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: nalidixic acid

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: broth dilution

value: chloramphenicol

value: colistin


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: IZSLT

text: No

text: Italy

text: Italy

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ITA

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: caecum turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: mg/L

value: Escherichia coli

value: resistant


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: susceptible


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ITA

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: sulfamethoxazole

value: ceftazidime

value: tetracycline


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

text: ITA

characteristic: SRA accession

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: caecum turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: ciprofloxacin

value: ampicillin


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ITA

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: EUCAST

value: gentamicin


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

characteristic: SRA accession

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: cefotaxime

value: trimethoprim

value: meropenem


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ITA

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Meleagris gallopavo

characteristic: host scientific name

text: Yes

text: caecum turkey

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: broth dilution

value: nalidixic acid


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: tigecycline


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ITA

characteristic: SRA accession

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Meleagris gallopavo

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: caecum turkey

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: mg/L

value: chloramphenicol

value: colistin


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Yes

text: Caecum, Pigs

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: resistant

value: Escherichia coli

value: susceptible


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ITA

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Sus scrofa

text: Yes

text: Caecum, Pigs

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: ceftazidime


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

characteristic: SRA accession

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Escherichia

text: Italy

text: Italy

text: other (non-clinical isolate)

text: not provided

text: Bos taurus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Caecum, Cattle

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

characteristic: strain

value: ciprofloxacin

value: tetracycline


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IZSLT

text: No

text: Italy

characteristic: geo loc name

text: Italy

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

text: Meat, Cattle

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Sus scrofa

text: Yes

text: Meat, Pigs

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: IZSLT

characteristic: collected by

text: No

characteristic: environmental sample

text: Italy

text: Italy

text: not provided

text: Bos taurus

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Caecum, Cattle

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ITA

text: IZSLT

text: No

text: Escherichia

characteristic: genus

text: Italy

characteristic: geo loc name

text: Italy

text: other (non-clinical isolate)

characteristic: host

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

text: Caecum, Cattle

characteristic: isolation source host associated

text: Slaughterhouse

text: Escherichia coli

text: Escherichia coli

value: EUCAST

value: ampicillin


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ITA

characteristic: Submitter Id

text: IZSLT

characteristic: collection date

text: No

text: Escherichia

text: Italy

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: other (non-clinical isolate)

text: not provided

text: Sus scrofa

text: Yes

text: Caecum, Pigs

text: Slaughterhouse

text: Escherichia coli

characteristic: organism

text: Escherichia coli

value: cefotaxime

value: sulfamethoxazole

value: gentamicin


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: ROSKILDE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:ROSKILDE UNIVERSITY

text: Per Meyer Jepsen, Roskilde University, Denmark

characteristic: collected by

text: Tisbe holothuriae mRNA from whoile animals and all life stages.

characteristic: description

text: All: embryos, nauplii, copepodites, adults

characteristic: dev stage

text: Jørgen Olesen, Natural History Museum of Denmark, Denmark

characteristic: identified by

text: Tisbe holothuriae

text: Tisbe holothuriae

characteristic: strain

text: Whole animal

characteristic: tissue type

text: Tisbe holothuriae mRNA

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Division of Evolution and Genomic Sciences, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.

characteristic: Submitter Id

unit: year

characteristic: age

text: not available

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Cartilage was obtained under Ethics Committee approval with written informed consent from 60 patients with symptomatic knee osteoarthritis (OA). Cartilage from osteochondral samples were isolated from the intact PLC (posterior lateral condyle) for RNA-seq analysis. Comparable PLC samples from 10 non-OA joints were obtained from above knee amputations of patients with peripheral vascular disease and no history or clinical sign of osteoarthritis, joint disease, or joint trauma. Total RNA was extracted from each patient sample of 200 to 400 mg of cartilage using TRIzol (LifeTechnologies) reagent and homogenisation (Braun Mikrodismembrator) following freezing in liquid nitrogen. The RNA was purified using RNeasy Qiagen clean-up columns (Qiagen) and for sequencing had a RIN score of >6 (2200 TapeStation, Agilent Technologies). Strand specific RNA-seq libraries were generated from 0.5-1 ug RNA using the TruSeq Stranded mRNA assay (Illumina, Inc.) using the manufacturers Stranded mRNA Sample Preparation Kit and 101bp paired-end reads were generated. Total RNA was extracted from 200-400 mg of cartilage using TRIzol (Life-technologies) reagent and homogenisation (Braun Mikrodismembrator) following freezing in liquid nitrogen. The RNA was purified using RNeasy Qiagen clean-up columns (Qiagen) and for sequencing had a RIN score of >6 (2200 TapeStation, Agilent Technologies).

text: vascular disease

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: articular cartilage of joint

characteristic: organism part

text: posterior lateral condyle of femur

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Division of Evolution and Genomic Sciences, School of Biological Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester, UK.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: description

text: osteoarthritis, knee

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: articular cartilage of joint

text: posterior lateral condyle of femur

text: Homo sapiens

text: female