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characteristic: ENA-CHECKLIST

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text: public

tag: Namespace:South African Sugarcane Research Institute

characteristic: collection date

text: gama grass

characteristic: common name

text: Using 12 novel PCR primers, the complete sequence of Tripsacum dactyloides was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Cambridgeshire, Cambridge

characteristic: geographic location (region and locality)

text: Tripsacum dactyloides

text: Tripsacum dactyloides

text: leaf

characteristic: tissue type

text: Chloroplast assembly of Tripsacum dactyloides

characteristic: title


characteristic: External Id

text: South African Sugarcane Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

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characteristic: SRA accession

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text: Using 12 novel PCR primers, the complete sequence of Tripsacum dactyloides var. meridionale was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: United Kingdom

text: Cambridgeshire, Cambridge

text: Tripsacum dactyloides var. meridionale

text: Tripsacum dactyloides var. meridionale

text: Chloroplast assembly for Tripsacum dactyloides var. meridionale

text: Tripsacum dactyloides var. meridionale

characteristic: variety


characteristic: ENA-CHECKLIST

text: EMBL - AUSTRALIA

text: public

tag: Namespace:EMBL - AUSTRALIA

text: Cryptolestes ferrugineus adults from the F4 generation of a genetic cross between susceptible (CF31) and weak resistant (CF37) strains. Survivors of selection with a discriminating dose of 0.02 mg/L

characteristic: description

text: Cryptolestes ferrugineus

characteristic: organism

text: Cryptolestes ferrugineus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SAHMRI

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: bronchiectasis sputum metagen


text: THE CHINESE UNIVERSITY OF HONG KONG

text: public

tag: Namespace:THE CHINESE UNIVERSITY OF HONG KONG

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: ROBERT KOCH INSTITUT

text: public

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: collection date

text: isolate obtained from a human listeriosis case in Germany

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax

characteristic: subject id

characteristic: title


text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

tag: Namespace:LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: African malaria mosquito

text: SureSelect target enriched gDNA from 1 female mosquito of the FANG colony

characteristic: description

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (3)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (4)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (5)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (6)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (7)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (8)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (9)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: FANG colony Anopheles funestus (10)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: SureSelect target enriched gDNA from 1 female mosquito derived from Cameroon, dead after exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (3)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (4)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (5)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (6)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (7)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (8)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (9)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, dead after permethrin exposure (10)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: SureSelect target enriched gDNA from 1 female mosquito derived from Cameroon, alive after exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (3)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (4)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (5)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (6)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (7)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (8)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (9)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, alive after permethrin exposure (10)


text: public

tag: Namespace:Botany and Plant Pathology Department  Oregon State University

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: rice

text: Cocodrie

characteristic: cultivar

text: Protocols: Samples were all taken 50 days after germination. Leaf samples ~ 2 cm from three biological replicates were collected from the control untreated (0-day) and the inoculation sites after 1, 3 and 5 days after treatment and placed immediately in liquid nitrogen until transfer to -80C freezer for storage. Mist chambers assays were performed in a greenhouse located on the Louisiana State University (LSU) campus in Baton Rouge, LA. The temperature inside the chamber ranging from minimum 27 degrees celsius in the night to maximum 37 degrees celsius in the day. Natural daylight was used with day length of approximately 11 hours 30 minutes and the humidity was maintained 80-90%. Inoculation occured 50 days after germination with a PDA medium disc (0.8 cm diameter) containing Rhizoctonia solani (LR172) mycelia placed at the base of the stem and other disc placed between leaf blade and leaf sheath in the primary tiller of each plant. Total RNA from frozen seedling shoot sample was extracted as per manufacturer's protocol using RNA Plant reagent (Invitrogen Inc., USA), RNeasy kits (Qiagen Inc., USA), and treated with RNase-free DNase (Life Technologies Inc., USA). True-Seq kit (Illumina Inc.) was used to prepare RNA-seq libraries, according to the manufacture’s protocol

text: wild type

characteristic: genotype

text: germination

characteristic: initial time point

text: Oryza sativa

text: Oryza sativa

text: vascular leaf

characteristic: organism part

text: Oryza sativa


characteristic: External Id

text: Botany and Plant Pathology Department Oregon State University

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: rice

text: Cocodrie

text: wild type

text: germination

text: Oryza sativa

text: Oryza sativa

text: vascular leaf

text: Oryza sativa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: ArrayExpress

text: rice

text: wild type

text: germination

text: Oryza sativa

text: Oryza sativa

text: vascular leaf

text: Oryza sativa

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Max Planck Institute for the Science of Human History

characteristic: Submitter Id

text: Yersinia pestis

characteristic: organism

text: Yersinia pestis


text: Max Planck Institute for the Science of Human History

text: public

text: Yersinia pestis

text: Yersinia pestis


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: UIC

text: public

characteristic: body mass index

text: MGRAST

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text: 62 Taxonomy ID:408170

characteristic: description

text: cultivated environment

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text: organ

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Illinois

characteristic: geographic location (region and locality)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut

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text: human gut metagenome

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text: human gut metagenome

text: illumina

characteristic: sequencing method

text: 62 Taxonomy ID:408170


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text: 72 Taxonomy ID:408170

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text: Illinois

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text: Illinois

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text: 80 Taxonomy ID:408170

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text: metagenome

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characteristic: sample name

text: human gut metagenome

text: illumina

text: 80 Taxonomy ID:408170