characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GTCCGTCCTGGT

text: I

text: chronic

text: rat gut metagenome

text: host-associated

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: Fecal

characteristic: experiment title

text: control

characteristic: experimental group

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: y

characteristic: hematochezia

text: UBERON:feces

characteristic: host body habitat

text: Rattus norvegicus

characteristic: host species

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: Rattus

text: uninfected

text: no

characteristic: infected

text: metagenome

characteristic: investigation type

text: rat gut metagenome

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target subfragment

characteristic: weight


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BRITISH COLUMBIA

characteristic: Submitter Id

text: AACAGTAAACAA

characteristic: bmi

text: I

characteristic: cage

text: chronic

characteristic: collection date

characteristic: days post infection

text: rat gut metagenome

characteristic: description

text: host-associated

characteristic: env package

text: ENVO:animal-associated habitat

characteristic: environment (biome)

text: ENVO:animal-associated habitat

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

characteristic: experiment day

text: Impact H. diminuta on induced chronic (DNBS) colitis - PREPATENT PERIOD

text: 115 total samples, 20 total rats, March 2017 for 2 weeks

text: control

text: Czech Republic

unit: DD

text: y

text: UBERON:feces

text: Rattus norvegicus

text: host-associated

text: Rattus

text: uninfected

text: no

text: metagenome

text: rat gut metagenome

characteristic: organism

text: Commensal helminth alters host immune system and the gut microbiota in a rat model system

text: rat gut metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AATACAGACCTG

text: I

text: chronic

text: rat gut metagenome

text: host-associated

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: Fecal

characteristic: experiment title

text: control

characteristic: experimental group

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: n

characteristic: hematochezia

text: UBERON:feces

characteristic: host body habitat

text: Rattus norvegicus

characteristic: host species

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: Rattus

text: uninfected

text: no

characteristic: infected

text: metagenome

characteristic: investigation type

text: rat gut metagenome

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target subfragment

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: GTGCCGGCCGAC

characteristic: bmi

text: I

characteristic: cage

text: no

characteristic: collection date

characteristic: days post infection

text: rat gut metagenome

characteristic: description

text: host-associated

characteristic: env package

text: ENVO:animal-associated habitat

characteristic: environment (biome)

text: ENVO:animal-associated habitat

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

characteristic: experiment day

text: control

text: Czech Republic

text: n

text: UBERON:feces

text: Rattus norvegicus

text: host-associated

text: Rattus

text: uninfected

text: no

text: metagenome

text: rat gut metagenome

characteristic: organism

text: rat gut metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CACCCTTGCGAC

text: H

text: no

text: rat gut metagenome

text: host-associated

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: Fecal

characteristic: experiment title

text: control

characteristic: experimental group

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: n

characteristic: hematochezia

text: UBERON:feces

characteristic: host body habitat

text: Rattus norvegicus

characteristic: host species

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: Rattus

text: uninfected

text: no

characteristic: infected

text: metagenome

characteristic: investigation type

text: rat gut metagenome

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target subfragment

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGATCGTGCCTA

characteristic: bmi

text: I

characteristic: cage

text: chronic

characteristic: collection date

characteristic: days post infection

text: rat gut metagenome

characteristic: description

text: host-associated

characteristic: env package

text: ENVO:animal-associated habitat

characteristic: environment (biome)

text: ENVO:animal-associated habitat

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

characteristic: experiment day

text: control

text: Czech Republic

text: y

text: UBERON:feces

text: Rattus norvegicus

text: host-associated

text: Rattus

text: uninfected

text: no

text: metagenome

text: rat gut metagenome

characteristic: organism

text: rat gut metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CTAGCGTGCGTT

text: J

text: chronic

text: rat gut metagenome

text: host-associated

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: Fecal

characteristic: experiment title

text: control

characteristic: experimental group

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: y

characteristic: hematochezia

text: UBERON:feces

characteristic: host body habitat

text: Rattus norvegicus

characteristic: host species

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: Rattus

text: uninfected

text: no

characteristic: infected

text: metagenome

characteristic: investigation type

text: rat gut metagenome

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target subfragment

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CCTCCGTCATGG

characteristic: bmi

text: J

characteristic: cage

text: chronic

characteristic: collection date

characteristic: days post infection

text: rat gut metagenome

characteristic: description

text: host-associated

characteristic: env package

text: ENVO:animal-associated habitat

characteristic: environment (biome)

text: ENVO:animal-associated habitat

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

characteristic: experiment day

text: control

text: Czech Republic

text: y

text: UBERON:feces

text: Rattus norvegicus

text: host-associated

text: Rattus

text: uninfected

text: no

text: metagenome

text: rat gut metagenome

characteristic: organism

text: rat gut metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GATCTAATCGAG

text: J

text: chronic

text: rat gut metagenome

text: host-associated

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: Fecal

characteristic: experiment title

text: control

characteristic: experimental group

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: n

characteristic: hematochezia

text: UBERON:feces

characteristic: host body habitat

text: Rattus norvegicus

characteristic: host species

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: Rattus

text: uninfected

text: no

characteristic: infected

text: metagenome

characteristic: investigation type

text: rat gut metagenome

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target subfragment

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGAGGGTGATCG

characteristic: bmi

text: J

characteristic: cage

text: no

characteristic: collection date

characteristic: days post infection

text: rat gut metagenome

characteristic: description

text: host-associated

characteristic: env package

text: ENVO:animal-associated habitat

characteristic: environment (biome)

text: ENVO:animal-associated habitat

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

characteristic: experiment day

text: control

text: Czech Republic

text: n

text: UBERON:feces

text: Rattus norvegicus

text: host-associated

text: Rattus

text: uninfected

text: no

text: metagenome

text: rat gut metagenome

characteristic: organism

text: rat gut metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CAAAGGAGCCCG

text: J

text: acute

text: rat gut metagenome

text: host-associated

text: ENVO:animal-associated habitat

text: ENVO:animal-associated habitat

text: Fecal

characteristic: experiment title

text: control

characteristic: experimental group

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: y

characteristic: hematochezia

text: UBERON:feces

characteristic: host body habitat

text: Rattus norvegicus

characteristic: host species

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: Rattus

text: uninfected

text: no

characteristic: infected

text: metagenome

characteristic: investigation type

text: rat gut metagenome

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target subfragment

characteristic: weight


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CCTCACTAGCGA

characteristic: bmi

text: J

characteristic: cage

text: chronic

characteristic: collection date

characteristic: days post infection

text: rat gut metagenome

characteristic: description

text: host-associated

characteristic: env package

text: ENVO:animal-associated habitat

characteristic: environment (biome)

text: ENVO:animal-associated habitat

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

characteristic: experiment day

text: control

text: Czech Republic

text: y

text: UBERON:feces

text: Rattus norvegicus

text: host-associated

text: Rattus

text: uninfected

text: no

text: metagenome

text: rat gut metagenome

characteristic: organism

text: rat gut metagenome

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:MONTEREY BAY AQUARIUM RESEARCH INSTITUTE

text: ocean

text: ocean

text: water

text: Yes

characteristic: environmental sample

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: Forward: CAGCAGCCGCGGTAATTCC3 Reverse: CCCGTGTTGAGTCAAATTAAGC

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: 18S rRNA V4 amplicon library


text: MONTEREY BAY AQUARIUM RESEARCH INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: ocean

characteristic: environment (biome)

text: ocean

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

text: USA

text: uncultured eukaryote

text: uncultured eukaryote

text: 18S rRNA V4 amplicon library


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Chengdu research base of giant panda breeding

text: giant panda

text: gut

text: fecel

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: Study for giant panda gut microbiota and cellulose digestion mechanism

characteristic: project name

text: metagenome

text: Illumina Hiseq

characteristic: sequencing method

characteristic: title


text: Chengdu research base of giant panda breeding

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: giant panda

text: gut

text: fecal

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: metagenome

text: metagenome

text: Illumina Hiseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2013-03-11 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Washington National Primate Research Center

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: juvenile

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-09-02 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2013-03-11 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: juvenile

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-09-15 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2011-09-22 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2008-07-31 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2010-03-22 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: juvenile

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2008-08-11 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2008-08-18 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-04-16 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2008-08-18 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-04-16 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-03-10 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-09-16 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-03-19 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-09-17 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-03-30 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-09-17 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-04-27 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-11-18 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-05-13 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-11-19 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-05-27 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-11-19 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-06-15 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-02-16 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-06-23 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

text: TR.M09 09:003

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-02-16 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: TR.M09 09:003

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-06-26 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

text: TT.M09 09:005

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-02-17 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: TT.M09 09:005

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2009-07-10 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-02-17 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2010-04-08 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-09-30 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2010-04-22 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-04-30 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2011-10-14 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: juvenile

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

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text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

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characteristic: External Id

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characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-10-25 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

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characteristic: title

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characteristic: ENA-CHECKLIST

text: UCSDMI

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text: UBERON:feces

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text: UBERON:feces

text: 2010-05-12 09:00

characteristic: description

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text: Host-asssociated

text: Animal

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text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

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characteristic: geo loc name

text: Rhesus macaque

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characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

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characteristic: age

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characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2010-05-20 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

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characteristic: title

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characteristic: ENA-CHECKLIST

text: UCSDMI

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text: days

text: UBERON:feces

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text: UBERON:feces

text: 2010-08-30 09:00

characteristic: description

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text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

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characteristic: host life stage

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characteristic: host scientific name

text: WG.M10 09:008

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

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characteristic: sex

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: public

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characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2012-03-08 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: WG.M10 09:008

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

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text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2010-09-07 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

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characteristic: sex

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2012-03-08 09:00

text: TRUE

text: Host-asssociated

text: Animal

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text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

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characteristic: organism

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characteristic: title

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characteristic: ENA-CHECKLIST

text: UCSDMI

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text: UBERON:feces

text: 2010-09-07 09:00

characteristic: description

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text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

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characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

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characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-04-25 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2012-11-09 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: juvenile

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: public

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text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-05-02 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2011-05-03 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

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characteristic: geo loc name

text: Rhesus macaque

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characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

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text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

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characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2012-11-09 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: XS.M11 09:002

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2011-06-16 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

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characteristic: SRA accession

characteristic: Submitter Id

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text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2013-01-11 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2011-06-21 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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characteristic: Submitter Id

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text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2011-06-22 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: neonate

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

characteristic: title

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: days

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: 2011-06-22 09:00

characteristic: description

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:WA

characteristic: geo loc name

text: Rhesus macaque

characteristic: host common name

text: neonate

characteristic: host life stage

text: Macaca mulatta

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: gut metagenome

text: FALSE

characteristic: physical samp avail now

text: UC Davis

text: FALSE

text: UC Davis

characteristic: sample center

text: feces

characteristic: sample type

text: gut metagenome

text: male

characteristic: sex

text: Monkey vaccination project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2013-01-11 09:00

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:WA

text: Rhesus macaque

text: juvenile

text: Macaca mulatta

text: gut metagenome

characteristic: organism

text: FALSE

text: UC Davis

text: FALSE

text: UC Davis

text: feces

text: gut metagenome

text: male

text: Monkey vaccination project

characteristic: title


EsubFWS

characteristic: ENA-CHECKLIST

text: STATION BIOLOGIQUE DE ROSCOFF

text: public

text: EsubFWS

tag: Namespace:STATION BIOLOGIQUE DE ROSCOFF

text: John West

characteristic: collected by

characteristic: collection date

text: CCAP 1310/196

characteristic: culture collection

text: sporophye

characteristic: dev stage

text: Rock

characteristic: isolation source

text: Ectocarpus sp. CCAP 1310/196

text: Ectocarpus sp. CCAP 1310/196

text: asexual

characteristic: sex

characteristic: strain

text: Ectocarpus subulatus freshwater strain 371 culture


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI FOR DEVELOPMENTAL BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:MPI FOR DEVELOPMENTAL BIOLOGY

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Gordon and Jessie Gilmour Leukaemia Research Laboratory, QIMR Berghofer Medical Research Institute,

characteristic: Submitter Id

text: 8 to 12

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The mice were germline knockouts for MR1 and IL-17A expression. MR1-/- mice on a C57BL/6-background (Treiner E etal., Nature, 2003) were provided by Prof O Lantz, Institute Curie, Paris, France. IL-17A-/- mice on a C57BL/6-background were provided by Dr Iwakura, University of Tokyo, Japan. All mice were bred and housed in the QIMR Berghofer Animal Facility, Brisbane, Australia. Tissue from proximal colon and distal ileum was collected from the same mice at 8-12 weeks of age.The mice were germline knockouts for MR1 and IL-17A expression. MR1-/- mice on a C57BL/6-background (Treiner E etal., Nature, 2003) were provided by Prof O Lantz, Institute Curie, Paris, France. IL-17A-/- mice on a C57BL/6-background were provided by Dr Iwakura, University of Tokyo, Japan. All mice were bred and housed in the QIMR Berghofer Animal Facility, Brisbane, Australia. Total RNA was isolated from proximal colon and distal ileum tissue using Precellys Lysing and Qiagen RNeasy Plus Mini kits as per manufacturer’s instructions. RNA libraries were prepared using the NEBnext Ultra RNA Library Prep Kit for Illumina (New England Biolabs), assessed for size and quantified using the 2100 Bioanalyzer (Agilent Technologies) and Qubit fluorometer (Thermofisher Scientific), respectively.

characteristic: description

text: gene knock out

characteristic: genetic modification

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ascending colon

characteristic: organism part

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Gordon and Jessie Gilmour Leukaemia Research Laboratory, QIMR Berghofer Medical Research Institute,

characteristic: INSDC center name

text: public

text: 8 to 12

text: ArrayExpress

text: house mouse

text: gene knock out

text: Mus musculus

text: Mus musculus

text: ileum

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8 to 12

text: ArrayExpress

text: house mouse

characteristic: common name

text: gene knock out

text: Mus musculus

text: Mus musculus

text: ascending colon

text: Mus musculus

text: female


text: public

characteristic: Submitter Id

text: 8 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: ascending colon

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

text: public

text: 8 to 12

text: ArrayExpress

text: house mouse

text: wild type genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ileum

characteristic: organism part

text: Mus musculus

text: female

characteristic: title


text: iPSC

text: male

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Male

characteristic: gender

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


E-MTAB-6570:Sample 14

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6570:Sample 14

tag: Namespace:Center for Medical Genetics Ghent Cancer Research Institute Ghent

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

characteristic: common name

text: Protocols: A total of 3-5x10^7 cells were crosslinked in complete medium with 1% formaldehyde while shaking for 7 min at room temperature. Crosslinking was quenched with 125 nM glycine, cells were washed twice with PBS and stored at -80°C. Cells were lysed and sonicated with the M220 Covaris for 15 min to obtain 200-300 bp long fragments. Chromatin fragments were immunoprecipitated overnight using 1 ug antibody for every 10^7 cells. 20 ul Protein A UltraLink Resin beads was added per 10^7 cells. Beads were eluted by incubation for 22 min at 5°C while vortexing every 2 min, reverse crosslinking was done at 65°C for 15h. Antibodies used in this experiment are as follows: Goat Anti-TBX2 polyclonal antibody, Santa Cruz Biotechnology, Cat# sc-17880; RRID: AB_2200389; Mouse Anti-N-MYC monoclonal antibody, Santa Cruz Biotechnology, Cat# sc-53993; RRID:AB_831602; Rabbit Anti-H3K4me1 polyclonal antibody, Abcam Cat# ab8895, RRID:AB_306847; Rabbit Anti-H3K4me3 polyclonal antibody; Abcam; Cat# ab8580, RRID:AB_306649; Rabbit Anti-H3K27ac polyclonal antibody, Abcam Cat# ab4729, RRID:AB_2118291 Cells were grown in RPMI1640 medium supplemented with 10% foetal bovine serum, 2mM L-Glutamine and 100 IU/ml penicillin/streptaviding at 37°C in a 5% CO2 humid atmosphere. The chromatin for DNA purposes was resuspended in TE-buffer to dilute SDS in the elution buffer, incubated for 2h at 37°C with 0.2 mg/ml RNase and followed by an incubation of 2h at 55°C with 0.2 mg/ml proteinase K. DNA was isolated using 400 ul phenol:chloroform:isoamylalcohol in phase lockd gel tubes. Upon centrifugation, the aqueous layer was transferred to a new tube with 200 mM NaCl, 30 ug glycogen and 800 ul 100% ethanol, and incubated for 30 min at -20°C. Upon centrifugation, the pellet was washed with 80% Ethanol and resuspended in RNase/DNase free water. Concentration was measured using the Qubit dsDNA HS Assay Kit. Library prep was done using the NEBNext Ultra DNA library Prep Kit from Illumina (E7370S) with 50-500 ng starting material and using 8-12 PCR cycles according to the manufacturer's instructions. Libraries were evaluated on the bio-analyzer (Agilent) using the Agilent high-sensitivity kit, followed by Pippin Prep with a 2% Dye Free Marker L Agarose Gel Cassette to remove large fragments or adapter dimers. Library concentrations were measured with the illumina Kapa Library quantification kit.

text: neuroblastoma

characteristic: disease

text: CHP212 H3K27ac

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 14


E-MTAB-6570:Sample 15

characteristic: ENA-FIRST-PUBLIC

text: Center for Medical Genetics Ghent Cancer Research Institute Ghent

text: public

text: E-MTAB-6570:Sample 15

text: ArrayExpress

characteristic: broker name

text: neuroblast

text: human

characteristic: description

text: neuroblastoma

text: CHP212 Input

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 15

characteristic: title


E-MTAB-6570:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6570:Sample 7

text: ArrayExpress

text: CLB-GA

text: neuroblast

text: human

text: neuroblastoma

text: CLB-GA H3K27ac

text: bone marrow

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 7


E-MTAB-6570:Sample 8

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6570:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: CLB-GA

text: neuroblast

text: human

text: neuroblastoma

text: CLB-GA H3K4me1

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 8


E-MTAB-6570:Sample 9

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6570:Sample 9

text: ArrayExpress

text: CLB-GA

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

characteristic: common name

text: neuroblastoma

characteristic: disease

text: CLB-GA Input

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 9


E-MTAB-6570:Sample 12

text: public

text: E-MTAB-6570:Sample 12

text: ArrayExpress

characteristic: broker name

text: GI-M-EN

text: neuroblast

text: human

characteristic: description

text: neuroblastoma

text: GI-M-EN H3K27ac

characteristic: individual

text: bone marrow

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 12


E-MTAB-6570:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6570:Sample 13

text: ArrayExpress

text: GI-M-EN

text: neuroblast

text: human

text: neuroblastoma

text: GI-M-EN Input

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 13

characteristic: title


E-MTAB-6570:Sample 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6570:Sample 1

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: IMR-32 TBX2 Rep1

text: abdominal mass

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 1


E-MTAB-6570:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6570:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

characteristic: common name

text: neuroblastoma

text: IMR-32 Input Rep1

text: abdominal mass

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 2


E-MTAB-6570:Sample 3

text: public

text: E-MTAB-6570:Sample 3

text: ArrayExpress

characteristic: broker name

text: neuroblast

text: human

characteristic: description

text: neuroblastoma

characteristic: disease

text: IMR-32 H3K27ac Rep1

characteristic: individual

text: abdominal mass

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 3


E-MTAB-6570:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6570:Sample 4

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: IMR-32 H3K4me3 Rep2

text: abdominal mass

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 4


E-MTAB-6570:Sample 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6570:Sample 5

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: IMR-32 Input Rep2

text: abdominal mass

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-6570:Sample 6

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6570:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

text: neuroblastoma

text: IMR-32 MYCN Rep2

text: abdominal mass

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 6


E-MTAB-6570:Sample 16

text: public

text: E-MTAB-6570:Sample 16

text: ArrayExpress

characteristic: broker name

text: neuroblast

text: human

characteristic: common name

characteristic: description

text: neuroblastoma

characteristic: disease

text: IMR-5 H3K27ac

characteristic: individual

text: abdominal mass

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 16


E-MTAB-6570:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6570:Sample 17

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: IMR-5 Input

text: abdominal mass

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 17


E-MTAB-6570:Sample 18

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6570:Sample 18

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: IMR-5/75 H3K27ac

text: abdominal mass

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 18


E-MTAB-6570:Sample 19

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6570:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

text: neuroblastoma

text: IMR-5/75 Input

text: abdominal mass

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 19

characteristic: title


E-MTAB-6570:Sample 10

text: public

text: E-MTAB-6570:Sample 10

text: ArrayExpress

characteristic: broker name

text: NGP

text: neuroblast

text: human

characteristic: common name

characteristic: description

text: neuroblastoma

characteristic: disease

text: NGP H3K27ac

text: lung

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 10


E-MTAB-6570:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6570:Sample 11

text: ArrayExpress

text: NGP

text: neuroblast

text: human

text: neuroblastoma

text: NGP Input

characteristic: individual

text: lung

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 11


E-MTAB-6570:Sample 20

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6570:Sample 20

text: ArrayExpress

text: SK-N-AS

text: neuroblast

text: human

text: neuroblastoma

text: SK-N-AS H3K27ac

text: bone marrow

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: Homo sapiens

text: Sample 20


E-MTAB-6570:Sample 21

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6570:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: SK-N-AS

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

text: neuroblastoma

text: SK-N-AS Input

text: bone marrow

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: Sample 21


text: Human Gut Microbiota

characteristic: ArrayExpress-PHENOTYPE

text: gut metagenome

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: gut metagenome

characteristic: common name

text: gut metagenome

text: Human Gut Microbiota

characteristic: phenotype

text: gut metagenome

characteristic: subject id

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Unit INSERM 1157/UMR 7203

characteristic: INSDC center name

text: public

tag: Namespace:Unit INSERM 1157/UMR 7203

characteristic: collection date

text: house mouse

text: gut

characteristic: environment (biome)

text: colon

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

text: Bilophila wadsworthia worsens high-fat diet-induced metabolic impairments in inflammation dependent and independent manners.

characteristic: project name

text: Mus musculus

text: NGS

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF ABERDEEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF ABERDEEN

characteristic: Submitter Id

text: Control 5 degrees Atmospheric

characteristic: description

text: marine sediment metagenome

characteristic: organism

text: marine sediment metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ABERDEEN

characteristic: INSDC center name

text: public

text: Oil 5 degrees Atmospheric

text: marine sediment metagenome

text: marine sediment metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: Control 20 degrees Environmental

text: marine sediment metagenome

text: marine sediment metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: Oil 20 degrees Environmental

text: marine sediment metagenome

text: marine sediment metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: Control 20 degrees Atmospheric

text: marine sediment metagenome

text: marine sediment metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: Oil 5 degrees Environmental

text: marine sediment metagenome

text: marine sediment metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: Oil 20 degrees Atmospheric

text: marine sediment metagenome

text: marine sediment metagenome


text: UNIVERSITY OF ABERDEEN

text: public

text: Control 5 degrees Environmental

text: marine sediment metagenome

text: marine sediment metagenome


text: Klebsiella pneumoniae ATCC 43816

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Klebsiella pneumoniae ATCC 43816

characteristic: common name

text: Klebsiella pneumoniae ATCC 43816

text: Klebsiella pneumoniae ATCC 43816

characteristic: subject id


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Salmonella Enteritidis

text: SC

text: public

text: Salmonella Enteritidis

text: Salmonella enterica subsp. enterica serovar Enteritidis


text: Salmonella Typhimurium

text: SC

text: public

text: Salmonella Typhimurium

text: Salmonella enterica subsp. enterica serovar Typhimurium


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: University of Chicago

characteristic: INSDC first public

text: public

tag: Namespace:University of Chicago

text: ArrayExpress

characteristic: broker name

text: cardiac muscle cell

characteristic: cell type

text: human

text: Protocols: We used the iPSC line NA19101 (https://www.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM19101&product=CC) to generate cardiomyocytes. Cardiomyocyte differentiations were carried out similar to the protocol of Burridge et al, 2013 with slight modifications. Briefly, we initiated mesoderm differentiation of the iPSCs with the GSK-3 inhibitor CHIR-99021 trihydrochloride for 24 hours (Tocris #4953). Two days later, cardiomyocyte differentiation was initiated with 2μM Wnt-C59 (Tocris #5148) for 48 hours. Cells exhibited spontaneous beating by day 8-10 and were subsequently selected with lactate on days 15-20 at which time they were harvested and analyzed with flow cytometry for cardiac troponin T. Total RNA was extracted from flash-frozen pellets of 1 million cells using TRI Reagent (Sigma #T9424) and a homogenizer followed by RNA isolation and clean-up using the Direct-zol RNA Kit (Zymo Research #11-331). RNA-seq libraries were generated with the Illumina TruSeq V2 kit (Illumina, RS-122-2001) and 1μg of RNA, following manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Yoruba

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Chicago

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

characteristic: description

text: adult

text: normal

text: Yoruba

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: lymphocyte of B lineage

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Centre of New Technologies Univesristy of Warsaw

text: wild cat

characteristic: common name

text: Felis silvestris

text: Felis silvestris

text: Felis from Poland


text: Centre of New Technologies Univesristy of Warsaw

text: public

text: wild cat

text: Felis silvestris

text: Felis silvestris

text: Felis from Poland