text: UTRECHT UNIVERSITY

text: public

text: Salmonella enterica subsp. enterica FSAN236, alias COLS1009

text: Colombia

text: Broiler slaughterhouse

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UTRECHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UTRECHT UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

text: Salmonella enterica subsp. enterica FVAL369, alias COLS1032

characteristic: description

text: Colombia

characteristic: geographic location (country and/or sea)

text: Broiler slaughterhouse

characteristic: isolation source

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

characteristic: title


text: UTRECHT UNIVERSITY

text: public

text: Salmonella enterica subsp. enterica FBOG7, alias COLS1035

text: Colombia

text: Broiler slaughterhouse

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


text: UTRECHT UNIVERSITY

text: public

text: Salmonella enterica subsp. enterica FPAS506, alias COLS1074

text: Colombia

text: Broiler slaughterhouse

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


text: UTRECHT UNIVERSITY

text: public

text: Escherichia coli carrying ESBL plasmid from UGBOG4, alias COLS334_T

text: Colombia

text: Transformant

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: Escherichia coli carrying ESBL plasmid from UGBOG327, alias COLS514_T

text: Colombia

text: Transformant

text: Escherichia coli

text: Escherichia coli


text: UTRECHT UNIVERSITY

text: public

text: Escherichia coli carrying ESBL plasmid from UGBAR1160, alias COLS736_T

text: Colombia

text: Transformant

text: Escherichia coli

text: Escherichia coli


text: University Hospital Galway

text: public

tag: Namespace:University Hospital Galway

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Typhimurium var. monophasic 4,[5],12:i:-

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Bredeney

text: Bredeney

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

text: Typhimurium

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Brandenburg

text: Brandenburg

text: Subsp. I

characteristic: title


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Unnamed

characteristic: serovar

text: Subsp. I

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Stanley

text: Stanley

text: Subsp. I


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Corvallis

text: Corvallis

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Food

text: Typhimurium

text: Subsp. I


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Montevideo

text: Montevideo

text: Subsp. I


text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: Salmonella enterica subsp. enterica serovar Infantis

characteristic: organism

text: Infantis

text: Subsp. I


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Java

text: Java

characteristic: serovar

text: Subsp. I

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica serovar Essen

text: Essen

text: Subsp. I

characteristic: sub species


RAA

characteristic: External Id

text: INSTITUE OF BIOPHYSICS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: RAA

tag: Namespace:INSTITUE OF BIOPHYSICS

text: garden sorrel

characteristic: common name

text: Rumex acetosa

text: Rumex acetosa

text: Rumex acetosa autosomes


RAX

text: INSTITUE OF BIOPHYSICS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: RAX

characteristic: Submitter Id

text: garden sorrel

text: Rumex acetosa

text: Rumex acetosa

text: Rumex acetosa X chromosome


RAY

text: INSTITUE OF BIOPHYSICS

text: public

text: RAY

text: garden sorrel

text: Rumex acetosa

text: Rumex acetosa

text: Rumex acetosa Y chromosomes


text: INRA

text: public

text: Evolutionary evidence of algal polysaccharide degradation acquisition by Pseudoalteromonas carrageenovora ATCC 43555T to adapt to macroalgal niches

characteristic: description

text: Pseudoalteromonas carrageenovora IAM 12662

characteristic: strain

text: Pseudoalteromonas carrageenovora str. ATCC43555T chromosome, complete genome


text: University Hospital Galway

text: public

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella flexneri 3b

characteristic: organism

text: Shigella flexneri 3b


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 1b

text: Shigella flexneri 1b

characteristic: title


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ireland

text: Homo sapiens

text: Human

text: Shigella sonnei

text: Shigella sonnei


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 1c

text: Shigella flexneri 1c


text: University Hospital Galway

text: public

characteristic: Submitter Id

text: Ireland

text: Homo sapiens

text: Human

text: Shigella flexneri 2a

text: Shigella flexneri 2a


text: public

tag: Namespace:Gurdon Institute, University of Cambridge

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: monocyte

characteristic: cell type

text: human

characteristic: common name

text: Protocols: OCI-AML2/Cas9 and OCI-AML3/Cas9 cells (stably expressing Cas9) were spin-infected with lentiviral particles expressing pKLV2- U6gRNA5 (BbsI)-PKGpuro2ABFP-W plasmid. This plasmid expresses both puromycin resistance cassette and a specific sgRNA. sgRNAs were designed to target sequences of the DDX3X gene encoding for the two portions of the bipartite DDX3X RNA binding domain (named RNA binding domain A- “RBDA” and RNA binding domain B - “RBDB”). The plasmid expressing no sgRNA was use to produce control cell lines (“empty vector” condition). Infected cells were cultured in puromycin since day 4 after infection and harvested at day 8 after infection (day 4 after puromycin selection). All conditions were produced in three independent biological replicates. Total RNA was purified from cells using miRNeasy Mini Kit (Qiagen) following manufacturer instructions. Excess of contaminating DNA was removed by On-Column DNase Digestion with the RNase-Free DNase Set (Qiagen), following manufacturer’s instructions. Ribosomal RNA was depleted with Ribo-Zero rRNA Removal Kit (Human/Mouse/Rat) from Illumina(R), following manufacturer’s instructions. All conditions were produced in three independent biological replicates. RNA-seq libraries were produced with NEXTflex RNA-Seq Kit for Illumina Sequencing from Bioo Scientific, following manufacturer’s instructions. The following Illumina barcodes were used. Sample Sequence TruSeq_Code OCIAML_2_Empty_REP1 CGATGT A002 OCIAML2_RBDA_REP1 TGACCA A004 OCIAML2_RBDB_REP1 ACAGTG A005 OCIAML_3_Empty_REP1 GCCAAT A006 OCIAML_3_RBDA_REP1 CAGATC A007 OCIAML_3_RBDB_REP1 CTTGTA A012 OCIAML_2_Empty_REP_2 ATCACG A001 OCIAML2_RBDA_REP2_ TTAGGC A003 OCIAML2_RBDB_REP2 ACTTGA A008 OCIAML_3_Empty_REP2 GATCAG A009 OCIAML_3_RBDA_REP2 TAGCTT A010 OCIAML_3_RBDB_REP2 GGCTAC A011 OCIAML_2_Empty_REP3 AGTCAA A013 OCIAML2_RBDA_REP3 AGTTCC A014 OCIAML2_RBDB_REP3 ATGTCA A015 OCIAML_3_Empty_REP3 CCGTCC A016 OCIAML_3_RBDA_REP3 GTGAAA A019 OCIAML_3_RBDB_REP3 GTCCGC A018 RNA-seq libraries were produced with NEXTflex RNA-Seq Kit for Illumina Sequencing from Bioo Scientific, following manufacturer’s instructions.

characteristic: description

text: acute myeloid leukemia

characteristic: disease

text: Cas9; pKLV2- U6gRNA5 (BbsI)-PKGpuro2ABFP-W

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Gurdon Institute, University of Cambridge

text: public

text: ArrayExpress

text: monocyte

text: human

text: acute myeloid leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: wild type phenotype

text: Homo sapiens

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: monocyte

text: human

text: acute myeloid leukemia

text: Cas9; pKLV2- U6gRNA5 (BbsI)-PKGpuro2ABFP-W; sgRNA against DDX3X RBDA

text: Homo sapiens

text: Homo sapiens

text: blood

text: CRISPR/Cas9 mediated knockout of DDX3X RBDA

text: Homo sapiens


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: monocyte

characteristic: cell type

text: human

text: acute myeloid leukemia

text: Cas9; pKLV2- U6gRNA5 (BbsI)-PKGpuro2ABFP-W; sgRNA against DDX3X RBDB

text: Homo sapiens

text: Homo sapiens

text: blood

text: CRISPR/Cas9 mediated knockout of DDX3X RBDB

text: Homo sapiens


text: Maynooth University

text: public

tag: Namespace:Maynooth University

text: pig gut metagenome

text: pig gut metagenome

text: female

characteristic: sex


text: Aggeu Magalhaes Research Center

text: public

tag: Namespace:Aggeu Magalhaes Research Center

text: Trichomonas vaginalis

text: Trichomonas vaginalis


text: EMBL

text: public

text: baker's yeast

characteristic: common name

text: sequencing of integrated loci for pre editing pool. Forward reads containing all 31 bp of barcodes. Reverse reads would consist of donor DNA and other plasmid sequences

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: baker's yeast

text: sequencing of integrated loci for post editing pool. Replicate 1. Forward reads containing all 31 bp of barcodes. Reverse reads would consist of donor DNA and other plasmid sequences

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: baker's yeast

text: sequencing of integrated loci for post editing pool. Replicate 2. Forward reads containing all 31 bp of barcodes. Reverse reads would consist of donor DNA and other plasmid sequences

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


characteristic: External Id

text: EMBL

text: public

text: baker's yeast

text: sequencing of integrated loci for post editing pool. Replicate 3. Forward reads containing all 31 bp of barcodes. Reverse reads would consist of donor DNA and other plasmid sequences

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: baker's yeast

text: sequencing of integrated loci for post editing pool. Replicate 4. Forward reads containing all 31 bp of barcodes. Reverse reads would consist of donor DNA and other plasmid sequences

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: baker's yeast

text: sequencing of integrated loci for post editing pool. Replicate 5. Forward reads containing all 31 bp of barcodes. Reverse reads would consist of donor DNA and other plasmid sequences

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: LIV

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CD3 stimulated splenocyte

text: short-tailed field vole

text: RNA collected from splenocyte cells and stimulated with CD3 antigen

text: Kielder Forest, Northumbria, UK

characteristic: geographic location (region and locality)

text: Microtus agrestis

text: Microtus agrestis

text: Field vole CD3 stimulated splenocyte


text: DTU-GE

text: public

text: DTU Bioinformatics

characteristic: broker name

text: NVRI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geo loc name

text: Poland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Animal

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAASTRICHT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:MAASTRICHT UNIVERSITY

text: human

characteristic: common name

text: U2O5 baseline samples from bds

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: U2O5 Baseline samples

characteristic: title


text: MAASTRICHT UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: iPSC baseline samples from Lueven

text: Homo sapiens

text: Homo sapiens

text: iPSC Baseline samples


text: KFU-TU

text: public

text: metagenome

text: metagenome


text: MAASTRICHT UNIVERSITY

text: public

text: human

text: iPSC baseline samples from Innsbruck

text: Homo sapiens

text: Homo sapiens

text: iPSC Baseline samples


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Exhaled Breath Condensate Samples


NURj

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: NURj

text: human

text: Homo sapiens

text: Homo sapiens

text: Exhaled Breath Condensate Samples


text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: The Investigation and Analysis of Microbiomic Data Relating to Diseases Surrounding the Deep Lung Tissue


E-MTAB-6243:Sample 3

text: public

text: E-MTAB-6243:Sample 3

tag: Namespace:Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich-Heine-University Dusseldorf

text: 5 to 6

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Three biologically independent, replicate experiments were performed. In each experiment, at least 4 full-grown leaves from 6 different plants were pooled for one biological replicate per treatment. In this way, 3 biologically independent, replicate samples per treatment and plant genotype were obtained. Arabidopsis thaliana plants were grown individually in pots containing a mixture of soil (Substrat BP3; Klasmann-Deilmann), vermiculite, and sand (8:1:1) in an enviromentally controlled cultivation chamber with a 10-h-day (9 AM to 7 PM)/14-h-night cycle. Relative humidity in the growth chambers was adjusted to 60% and day and night temperatures were set to 21°C and 18°C, respectively Experiments were performed with 5- to 6-week-old, naive plants exhibiting a uniform appearance.Treatments with pipecolic acid (Pip) were essentially performed as detailed in Návarová et al. (2012).10 ml of a 1 mM aqueous solution of Pip (equates to 10 µmol) were pipetted onto the soil of individually cultivated 5-week-old plants. 10 ml of water were applied in the control treatments. Three biologically independent, replicate experiments were performed. In each experiment, 24 hours after the watering with Pip or water, at least 4 full-grown leaves from 6 different plants were pooled for one biological replicate. RNA was extracted from leaf sample replicates with the Plant RNeasy extraction kit (Qiagen, Germany), and treated on-column (Qiagen, Germany) and in solution with RNA-free DNAse (New England Biolabs, MA, USA). RNA integrity, sequencing library quality and fragment size were checked on a 2100 Bioanalyzer (Agilent, CA, USA). Libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina, San Diego, CA) and library quantification was performed with a Qubit 2.0 (Invitrogen, Germany). Leaf samples were multiplexed 12 libraries per lane yielding approximately 150 million reads per lane.

characteristic: ecotype

text: fmo1 mutant

characteristic: genotype

text: growth chamber study

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

unit: hour

characteristic: time

text: Sample 3


E-MTAB-6243:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Molecular Ecophysiology of Plants, Department of Biology, Heinrich-Heine-University Dusseldorf

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6243:Sample 4

text: 5 to 6

text: ArrayExpress

text: thale cress

text: fmo1 mutant

text: growth chamber study

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-6243:Sample 7

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6243:Sample 7

characteristic: Submitter Id

text: 5 to 6

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: fmo1 mutant

text: growth chamber study

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 7

characteristic: title


E-MTAB-6243:Sample 8

text: public

text: E-MTAB-6243:Sample 8

text: 5 to 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: ecotype

text: fmo1 mutant

characteristic: genotype

text: growth chamber study

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-6243:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6243:Sample 11

text: 5 to 6

text: ArrayExpress

text: thale cress

text: fmo1 mutant

text: growth chamber study

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 11


E-MTAB-6243:Sample 12

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6243:Sample 12

text: 5 to 6

text: ArrayExpress

text: thale cress

text: fmo1 mutant

text: growth chamber study

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-6243:Sample 1

text: public

characteristic: SRA accession

text: E-MTAB-6243:Sample 1

characteristic: Submitter Id

text: 5 to 6

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: wild type genotype

text: growth chamber study

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 1


E-MTAB-6243:Sample 2

text: public

text: E-MTAB-6243:Sample 2

text: 5 to 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: growth chamber study

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 2

characteristic: title


E-MTAB-6243:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6243:Sample 5

text: 5 to 6

text: ArrayExpress

text: thale cress

text: wild type genotype

text: growth chamber study

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 5


E-MTAB-6243:Sample 6

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6243:Sample 6

text: 5 to 6

text: ArrayExpress

text: thale cress

text: wild type genotype

text: growth chamber study

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

characteristic: time

text: Sample 6


E-MTAB-6243:Sample 10

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6243:Sample 10

characteristic: Submitter Id

text: 5 to 6

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: wild type genotype

text: growth chamber study

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-6243:Sample 9

text: public

text: E-MTAB-6243:Sample 9

text: 5 to 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: growth chamber study

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Medical Center Groningen

text: public

tag: Namespace:University Medical Center Groningen

text: not provided

characteristic: collection date

text: Brazil, Rio de Janeiro

characteristic: country

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Polar biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Antarctica

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Polar biome

text: Stream

text: water

text: Antarctica

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Polar biome

characteristic: environment (biome)

text: Soil crust

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Antarctica

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

text: Pole-to-pole connections

text: soil metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: Polar biome

text: Ice-based Pond

text: water

text: Antarctica

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


BA-A

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BA-A

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Canada

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


BA-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: BA-B

text: Tundra biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


BA-C

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BA-C

text: Tundra biome

text: Terrestrial Pond

text: water

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


BA-D

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BA-D

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Canada

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


BA-E

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

text: BA-E

text: Tundra biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


SV-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

text: public

text: SV-A

text: Tundra biome

text: Terrestrial Pond

text: water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


SV-B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SV-B

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Norway

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


SV-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

text: SV-C

text: Tundra biome

characteristic: environment (biome)

text: Stream

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


SV-D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

text: public

text: SV-D

text: Tundra biome

text: Terrestrial Pond

text: water

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


SV-E

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SV-E

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Norway

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


NC-A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

text: NC-A

text: Tundra biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


NC-B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

text: public

text: NC-B

text: Tundra biome

text: Ice-based Pond

text: water

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


NC-C

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NC-C

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Canada

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


NC-D

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

text: NC-D

text: Tundra biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


NC-E

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

text: public

text: NC-E

text: Tundra biome

text: Ice-based Pond

text: water

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


EU-E

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EU-E

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Bulgaria

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

text: Tundra biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: New Zealand

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


EU-A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC first public

text: public

text: EU-A

text: Tundra biome

text: Terrestrial Pond

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


EU-B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: EU-B

characteristic: Submitter Id

characteristic: collection date

text: Tundra biome

text: Terrestrial Pond

text: water

text: Sweden

text: metagenome

text: freshwater metagenome

characteristic: organism

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

characteristic: title

text: water


EU-C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

characteristic: INSDC center name

text: public

text: EU-C

text: Tundra biome

characteristic: environment (biome)

text: Terrestrial Pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: freshwater metagenome

text: Pole-to-pole connections

text: freshwater metagenome

text: Illumina

text: water sample

text: water


EU-D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC first public

text: public

text: EU-D

text: Tundra biome

text: Terrestrial Pond

text: water

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: Pole-to-pole connections

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

text: water sample

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Medical Center Groningen

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Brazil, Rio de Janeiro

characteristic: country

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Max Planck Institute for the Science of Human History

text: Salmonella enterica subsp. enterica serovar Paratyphi C


text: Max Planck Institute for the Science of Human History

text: public


soil

text: public

text: soil

text: soil metagenome

text: soil metagenome


text: NTNU University Museum

text: public

tag: Namespace:NTNU University Museum

text: uncultured eukaryote

characteristic: common name

text: sample extract

characteristic: description

text: marine

characteristic: environment (biome)

text: water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: fwd_seq: CYGCGGTAATTCCAGCTC, rev_seq: AGAGGTGRAATTCTHRGA

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: Succession


E-MTAB-4558:WT free & monosomes R1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DKFZ-ZMBH Alliance

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4558:WT free & monosomes R1

tag: Namespace:DKFZ-ZMBH Alliance

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Lister 427 Lister 427 in vitro culture rRNA depletion & Illumina standard kit

text: bloodstream form

characteristic: developmental stage

text: free and monosomes

characteristic: fraction

text: expression of tet repressor

characteristic: genotype

text: Trypanosoma brucei

characteristic: organism

text: Trypanosoma brucei

text: wild type

characteristic: phenotype

text: Trypanosoma brucei

text: Lister 427

characteristic: strain

text: WT free & monosomes R1

characteristic: title


E-MTAB-4558:WT free & monosomes R2

characteristic: External Id

text: DKFZ-ZMBH Alliance

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4558:WT free & monosomes R2

text: ArrayExpress

characteristic: description

text: bloodstream form

text: free and monosomes

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT free & monosomes R2


E-MTAB-4558:WT free & monosomes R3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:WT free & monosomes R3

text: ArrayExpress

text: bloodstream form

text: free and monosomes

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT free & monosomes R3


E-MTAB-4558:WT input R1

text: DKFZ-ZMBH Alliance

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4558:WT input R1

text: ArrayExpress

text: bloodstream form

text: input

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT input R1


E-MTAB-4558:WT input R2

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:WT input R2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: bloodstream form

characteristic: developmental stage

text: input

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT input R2


E-MTAB-4558:WT input R3

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:WT input R3

text: ArrayExpress

text: bloodstream form

text: input

characteristic: fraction

text: expression of tet repressor

characteristic: genotype

text: Trypanosoma brucei

characteristic: organism

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT input R3


E-MTAB-4558:WT polysomes R1

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:WT polysomes R1

text: ArrayExpress

text: bloodstream form

text: polysomes

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

characteristic: phenotype

text: Trypanosoma brucei

text: Lister 427

characteristic: strain

text: WT polysomes R1

characteristic: title


E-MTAB-4558:WT polysomes R2

characteristic: External Id

text: DKFZ-ZMBH Alliance

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-4558:WT polysomes R2

text: ArrayExpress

text: bloodstream form

text: polysomes

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT polysomes R2


E-MTAB-4558:WT polysomes R3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:WT polysomes R3

text: ArrayExpress

characteristic: description

text: bloodstream form

text: polysomes

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT polysomes R3


name: E-MTAB-4558:ind ZC3H32KO -tet free & monosomes R1

characteristic: ENA-LAST-UPDATE

text: DKFZ-ZMBH Alliance

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Protocols: Inducible ZC3H32 KO Lister 427 in vitro culture rRNA depletion & Illumina standard kit

text: bloodstream form

text: free and monosomes

text: ZC3H32 double knockout with tetracycline-inducible expression of ZC3H32

text: Trypanosoma brucei

text: Trypanosoma brucei

text: tetracycline-dependent expression of ZC3H32 (low ZC3H32 expression)

text: Trypanosoma brucei

text: Lister 427

text: ind ZC3H32KO -tet free & monosomes R1


name: E-MTAB-4558:ind ZC3H32KO -tet free & monosomes R2

text: DKFZ-ZMBH Alliance

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: bloodstream form

text: free and monosomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: ind ZC3H32KO -tet free & monosomes R2


E-MTAB-4558:ind ZC3H32KO -tet input R1

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:ind ZC3H32KO -tet input R1

text: ArrayExpress

text: bloodstream form

characteristic: developmental stage

text: input

characteristic: fraction

characteristic: genotype

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: ind ZC3H32KO -tet input R1


E-MTAB-4558:ind ZC3H32KO -tet input R2

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:ind ZC3H32KO -tet input R2

text: ArrayExpress

text: bloodstream form

text: input

text: Trypanosoma brucei

characteristic: organism

text: Trypanosoma brucei

characteristic: phenotype

text: Trypanosoma brucei

text: Lister 427

characteristic: strain

text: ind ZC3H32KO -tet input R2


name: E-MTAB-4558:ind ZC3H32KO -tet polysomes R1

characteristic: External Id

text: DKFZ-ZMBH Alliance

characteristic: INSDC center name

text: public

text: ArrayExpress

text: bloodstream form

text: polysomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: ind ZC3H32KO -tet polysomes R1

characteristic: title


name: E-MTAB-4558:ind ZC3H32KO -tet polysomes R2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DKFZ-ZMBH Alliance

characteristic: INSDC first public

text: public

text: ArrayExpress

text: bloodstream form

text: polysomes

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: ind ZC3H32KO -tet polysomes R2


E-MTAB-4558:WT free & monosomes R4

characteristic: ENA-LAST-UPDATE

text: DKFZ-ZMBH Alliance

characteristic: INSDC last update

text: public

text: E-MTAB-4558:WT free & monosomes R4

text: ArrayExpress

text: Protocols: Lister 427 in vitro culture rRNA depletion & Illumina standard kit

characteristic: description

text: bloodstream form

text: free and monosomes

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT free & monosomes R4


E-MTAB-4558:WT input R4

text: DKFZ-ZMBH Alliance

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-4558:WT input R4

characteristic: Submitter Id

text: ArrayExpress

text: bloodstream form

text: input

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT input R4


E-MTAB-4558:WT polysomes R4

text: DKFZ-ZMBH Alliance

text: public

text: E-MTAB-4558:WT polysomes R4

text: ArrayExpress

characteristic: broker name

text: bloodstream form

characteristic: developmental stage

text: polysomes

characteristic: fraction

text: expression of tet repressor

text: Trypanosoma brucei

text: Trypanosoma brucei

text: wild type

text: Trypanosoma brucei

text: Lister 427

text: WT polysomes R4


E-MTAB-6244:Sample 1

text: BAH-GU

text: public

text: E-MTAB-6244:Sample 1

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Methodology: U2OS cells were infected with retrovirus expressing NUAK1 shRNA4977 (see Liu et al. Nature. 2012 for shRNA details) or non-targeting control shRNA. 24hrs after infected, cells were selected on Puromycin for 48hrs, then trypsinized and re-seeded. Cells were harvested 24hrs after re-seeding and RNA was isolated using Qiagen RNEasy midi kits. cDNA was generated using TruSeq Stranded mRNA Library Prep Kit (Illumina). Following library quantification (D1000 ScreenTape, Agilent Technologies), libraries were standardized to 10nM, denatured, diluted to 10pM and analyzed by paired-end sequencing using an Illumina NextSeq500 platform. Sample number NM 1 to 3 are treated with shCtrl. Sample number NM7 to 9 are shNUAK1. Cells were lysed directly on 10cm dishes using Qiagen RNEasy extraction buffer RNA was isolated using Qiagen RNEasy cDNA was synthesized with the TruSeq Stranded mRNA Library Prep Kit (Illumina)

text: osteosarcoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone tissue

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-6244:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: BAH-GU

characteristic: INSDC center name

text: public

text: E-MTAB-6244:Sample 2

text: ArrayExpress

text: epithelial cell

text: human

text: osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: bone tissue

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-6244:Sample 3

characteristic: ENA-LAST-UPDATE

text: BAH-GU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6244:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

characteristic: description

text: osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: bone tissue

text: Homo sapiens

text: Sample 3


E-MTAB-6244:Sample 7

text: BAH-GU

text: public

characteristic: SRA accession

text: E-MTAB-6244:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: bone tissue

text: Homo sapiens

text: Sample 7


E-MTAB-6244:Sample 8

text: BAH-GU

text: public

text: E-MTAB-6244:Sample 8

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: bone tissue

text: Homo sapiens

text: Sample 8


E-MTAB-6244:Sample 9

text: BAH-GU

text: public

text: E-MTAB-6244:Sample 9

text: ArrayExpress

text: epithelial cell

text: human

text: osteosarcoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone tissue

characteristic: organism part

text: Homo sapiens

text: Sample 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

tag: Namespace:Department of Clinical Microbiology, Rigshospitalet

text: ArrayExpress

text: Protocols: Bacteria were grown in BHI medium at 37°C under shaking conditions (200 rpm). Cells were harvested by centrifugation after reaching OD600 2.7 . Pellets were frozen at -80°C. Bacterial pellets were resupended in 200 µl of 1x Tris-EDTA buffer (pH 8.0) containing 100 µg/ml lysozyme and 20 µg/ml Proteinase K. RNA was extracted using Trizol reagent according the provided protocol. RNA was purified from aqueous phase using Zymo Research RNA Clean & concentrator kit. rRNA was depleted using Ribo-Zero rRNA Removal Kit (Gram-Negative Bacteria) and library was prepared following protocol provided with Illumina TruSeq Stranded mRNA Library Prep Kit.

text: ersA

characteristic: genotype

text: Brain Heart Infusion (BHI) medium. 37C. Shaking 200 rpm.

characteristic: growth condition

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


characteristic: ENA-LAST-UPDATE

text: Department of Clinical Microbiology, Rigshospitalet

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: ersA

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: wild type genotype

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: Maynooth University

text: public

text: pig gut metagenome

characteristic: organism

text: pig gut metagenome

text: Pig faecal samples Ireland


text: Maynooth University

text: public

text: Pig

characteristic: host scientific name

text: pig gut metagenome

text: pig gut metagenome

text: Pig samples 15 16


Aspergillus niger  N402 (ATCC 64974)

characteristic: ENA-CHECKLIST

text: WAGENINGEN UNIVERSITY

text: public

text: Aspergillus niger N402 (ATCC 64974)

tag: Namespace:WAGENINGEN UNIVERSITY

text: Aspergillus niger

characteristic: common name

text: Aspergillus niger

text: Aspergillus niger

text: N402 (ATCC 64974)

characteristic: strain

text: Aspergillus niger N402 (ATCC 64974)


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: MACQUARIE UNIVERSITY

text: public

tag: Namespace:MACQUARIE UNIVERSITY

characteristic: collection date

text: humpback whale

text: whale blow

text: environmental system determined by an organim

characteristic: environment (biome)

text: respiratory system

characteristic: environment (feature)

text: exhaled breath condensate

characteristic: environment (material)

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: respiratory system

characteristic: host body habitat

text: whale

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Zymo Research Quick-DNA Fungal/Bacterial Miniprep kit

characteristic: nucleic acid extraction

text: Megaptera novaeangliae

text: Mapping and Modelling the Australian Marine Microbiome

characteristic: project name

text: drone and petri dish

characteristic: sample collection device or method

text: Megaptera novaeangliae

text: illumina

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MACQUARIE UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: humpback whale

characteristic: common name

text: Air

characteristic: description

text: air

text: air above seawater

text: air

text: Tasman Sea

text: respiratory system

text: whale

text: host-associated

text: metagenome

text: Megaptera novaeangliae

characteristic: organism

text: drone and petri dish

text: Megaptera novaeangliae

text: illumina

text: 16S rRNA gene

characteristic: title


text: EMBL

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


BSM

text: CHINESE ACADEMY OF SCIENCES

text: public

text: BSM

tag: Namespace:CHINESE ACADEMY OF SCIENCES

text: Pepper field

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: 16S rRNA gene

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: BSM affected bacterial community


text: Dracunculus medinensis

tag: attribute

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Guinea worm

text: Dracunculus medinensis

text: Dracunculus medinensis

characteristic: subject id

text: Dracunculus medinensis


text: STREPTOCOCCUS PNEUMONIAE

text: SC

text: public

text: STREPTOCOCCUS PNEUMONIAE

characteristic: common name

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: title


text: Enterococcus faecium

text: SC

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:Systems Immunity University Research Institute

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: effector CD4+ T-cells

characteristic: cell type

text: house mouse

text: Protocols: CD4+ T-cells were isolated from the C57BL/6 mice spleen by sorting after negative magnetic selection. Naive CD4+ T cells were characterized as CD4+CD25−CD44loCD62LhiCD127hi and effector memory (Tem) as CD4+CD25−CD44hiCD62LloCD127int-hi. Naive and Tem CD4+T-cells were activated by plate bound anti-CD3 (1μg/ml; clone 145-2C11, MAB484-500, R&D Systems) and soluble anti-CD28 (5μg/ml; clone 37.51, 16-0281-86, eBioscience) with IL-6 (20ng/ml, 406-ML-025/CF, R&D Systems) for 1 hour. After treatment, CD4+ T-cells were cross-linked, lysed and sonicated to obtain sheared DNA. Incubation with anti-STAT1 (sc-592, Santa Cruz Biotechnology) or anti-STAT3 (sc-482, Santa Cruz Biotechnology) antibodies was performed over-night after immunoprecipitation using ProteinG/A magnetic beads. DNA isolation for the immunoprecipitated samples and the corresponding input was execute following the Phenol/Chloroform/Isoamyl alcohol 25:24:1 protocol. DNA was precipitated adding 10ugr of Glycogen and 0.3M Sodium acetate in 70% ethanol. ChIP-seq libraries for STAT1 and STAT3 were performed following the Ion ChIP-Seq Library Preparation on the Ion Proton TM System (# 4473623) according to manufacturer’s instructions. DNA fragments obtained from the DNA extraction were first end-repaired and after ligate the adaptors compatible to Ion Proton System, libraries were amplified and size-selected in order to sequence the inserts approximately between 100-250bp.

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

text: IL-6; 20 nanogram per milliliter

characteristic: stimulus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Systems Immunity University Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 10 to 12

text: ArrayExpress

text: effector CD4+ T-cells

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: male

text: IL-6; 20 nanogram per milliliter


text: public

characteristic: Submitter Id

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: naive CD4+ T-cells

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: male

text: IL-6; 20 nanogram per milliliter

characteristic: title


text: gut metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: gut metagenome

text: gut metagenome

text: gut metagenome

characteristic: subject id


text: Klebsiella pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Pseudomonas aeruginosa

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Salmonella enterica

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Mouse Intestinal Epithelial Cells

text: Adult

text: Cecum

text: WT

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: WT

characteristic: phenotype

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:NIFES (National Institute of Nutrition and Seafood Research)

text: minke whale

characteristic: common name

text: Mature

characteristic: dev stage

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

characteristic: sex

text: Jejunum

characteristic: tissue type

text: Sample 1 Female Mature Jejunum


characteristic: ENA-CHECKLIST

text: NIFES (National Institute of Nutrition and Seafood Research)

text: public

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

characteristic: organism

text: Balaenoptera acutorostrata

text: Female

text: Ileum

text: Sample 2 Female Mature Ileum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Colon

text: Sample 3 Female Mature Colon


characteristic: External Id

characteristic: INSDC center name

text: public

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Male

text: Jejunum

text: Sample 4 Male Mature Jejunum


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Male

text: Ileum

text: Sample 5 Male Mature Ileum


text: public

characteristic: INSDC status

characteristic: SRA accession

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Male

text: Colon

text: Sample 6 Male Mature Colon


text: public

characteristic: Submitter Id

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Jejunum

text: Sample 7 Female Mature Jejunum


text: public

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Ileum

text: Sample 8 Female Mature Ileum


text: public

text: minke whale

text: Mature

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Colon

text: Sample 9 Female Mature Colon


text: public

text: minke whale

text: Juvenile

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Jejunum

text: Sample 10 Female Juvenile Jejunum


text: public

text: minke whale

text: Juvenile

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Ileum

text: Sample 11 Female Juvenile Ileum


text: public

text: minke whale

text: Juvenile

text: Balaenoptera acutorostrata

text: Balaenoptera acutorostrata

text: Female

text: Colon

text: Sample 12 Female Juvenile Colon


text: public

tag: Namespace:SWISS FEDERAL INSTITUTE FOR FOREST, SNOW AND LANDSCAPE RESEARCH

characteristic: collection date

text: soil metagenome

text: proglacial area, transect: 500 m from glacier front

characteristic: description

text: proglacial soil

characteristic: environment (biome)

text: proglacial soil

characteristic: environment (feature)

text: proglacial soil

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: LYR16 soil

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Bacteria


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SWISS FEDERAL INSTITUTE FOR FOREST, SNOW AND LANDSCAPE RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: soil metagenome

characteristic: common name

text: proglacial soil

text: proglacial soil

text: proglacial soil

text: Svalbard

text: metagenome

text: soil metagenome

characteristic: organism

text: LYR16 soil

text: soil metagenome

text: Illumina Miseq

text: soil

text: Bacteria

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

text: proglacial area, transect: 800 m from glacier front

characteristic: description

text: proglacial soil

characteristic: environment (biome)

text: proglacial soil

characteristic: environment (feature)

text: proglacial soil

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: LYR16 soil

text: soil metagenome

text: Illumina Miseq

text: soil

text: Bacteria


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil metagenome

text: proglacial area, transect: 950 m from glacier front

text: proglacial soil

text: proglacial soil

text: proglacial soil

text: Svalbard

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: LYR16 soil

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Bacteria


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

characteristic: description

text: proglacial soil

characteristic: environment (biome)

text: proglacial soil

characteristic: environment (feature)

text: proglacial soil

text: Svalbard

text: metagenome

text: soil metagenome

characteristic: organism

text: LYR16 soil

text: soil metagenome

text: Illumina Miseq

text: soil

text: Fungi

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil metagenome

text: proglacial soil

text: proglacial soil

text: proglacial soil

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: LYR16 soil

text: soil metagenome

text: Illumina Miseq

text: soil

text: Fungi


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

text: proglacial soil

text: proglacial soil

text: proglacial soil

text: Svalbard

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: LYR16 soil

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Fungi


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil metagenome

characteristic: description

text: proglacial soil

characteristic: environment (biome)

text: proglacial soil

characteristic: environment (feature)

text: proglacial soil

text: Svalbard

text: metagenome

text: soil metagenome

characteristic: organism

text: LYR16 soil

text: soil metagenome

text: Illumina Miseq

text: soil

text: Archaea

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

text: proglacial soil

text: proglacial soil

text: proglacial soil

characteristic: environment (material)

text: Svalbard

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: soil metagenome

text: LYR16 soil

text: soil metagenome

text: Illumina Miseq

text: soil

text: Archaea


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: soil metagenome

text: proglacial soil

text: proglacial soil

text: proglacial soil

text: Svalbard

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: LYR16 soil

characteristic: project name

text: soil metagenome

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Archaea


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: baker's yeast

text: Sequencing of the vector containing guide, donor dna and barcode. First 31 base pair of the forward read contains the unique barcode used to tagged each guide - donor dna. The 31 base pair barcode sequence is followed by round 2 homology and subpool-specific priming sequence. Barring indels, bases starting from 107 of forward read contains part of the donor dna. 1st 20 bases of the reverse read are the guide sequence, followed by BspQI site and donor dna.

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: barcode-to-guide-donor mapping-RM11


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH

text: house mouse

text: Bulk RNA-Seq Isl1-positiv CPCs from e7.5

text: embryonic

characteristic: dev stage

text: Mus musculus

text: Mus musculus


text: MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH

text: public

text: house mouse

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Isl1-positiv CPCs from e8.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Isl1-positiv CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Nkx2-5-positiv CPCs from e7.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Nkx2-5-positiv CPCs from e8.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Nkx2-5-positiv CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Isl1-KO CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk RNA-Seq Nkx2-5-OE CPCs from e12.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Isl1-positive CPCs from e7.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Isl1-positive CPCs from e8.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Isl1-positive CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Isl1-KO CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Nkx2-5-positive CPCs from e7.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Nkx2-5-positive CPCs from e8.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Bulk ATAC-Seq Nkx2-5-positive CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

characteristic: INSDC status

text: E-MTAB-6254:15H_ATGTCA_L008_R1_001.fastq

tag: Namespace:FIOCRUZ - PARANA - Instituto Carlos Chagas

unit: year

characteristic: age

text: Lot 0000364977

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: adipose tissue derived mesenchymal stem cell

characteristic: cell type

text: human

text: Protocols: Polysomal and Free fractions from adipose tissue stem cells cultures treated with cyclopamine, purmorphamine or DMSO for 24 hours were prepared according to (Spangenberg et al., 2013). In brief, cells were treated with 0.1 mg/mL cycloheximide (Sigma-Aldrich) for 10 min at 37oC, removed from the culture flasks with a cell scraper, and resuspended in 0.1 mg/mL cycloheximide in PBS. The suspension was centrifuged (2,000 g for 5 min), and the resulting pellet was washed twice with 0.1 mg/mL cycloheximide in PBS. The cells were lysed by incubation for 10 min on ice with polysome buffer (15mM Tris-HCl pH 7.4, 1% Triton X-100, 15mM MgCl2, 0.3M NaCl, 0.1 mg/mL cycloheximide), and the cell lysate was centrifuged at 12,000 g for 10 min at 4oC. The supernatant was carefully isolated, loaded onto 10% to 50% sucrose gradients, and centrifuged at 39,000 rpm (HIMAC CP80WX HITACHI) for 160 min at 4oC. The sucrose gradient was fractionated with the ISCO gradient fractionation system (ISCO Model 160 gradient former), connected to a UV detector to monitor the absorbance at 275 nm, and the polysome profile was recorded. The free and polysomal RNA fractions were extracted by DirectZOL (Zymo Research). Cells and culture conditions Human Adipose-Derived Stem Cells (ASC) from lipoaspirates were purchased from a commercial source (Lonza®, Walkersville, USA; catalog number PT-5006). ADSC from 3 different donnors were cultured in accordance with datasheet instructions. In brief, cells were cultivated in Dulbecco's Modified Eagle's Medium (DMEM) (Gibco Invitrogen®, Carlsbad, California, USA) supplemented with 10% fetal bovine serum (Gibco Invitrogen®, Carlsbad, California, USA) and 4 mM L-glutamine (Gibco Invitrogen®, Carlsbad, California, USA), without antibiotics. The cells were maintained at 37 C in 5% CO2 atmosphere. Cyclopamine (Sigma Aldrich - C4116) was dissolved in dimethyl sulfoxide, stocked 1mM and used at 5µM in culture for 24 hours. Purmorphamine (Sigma Aldrich - SML0868) was dissolved in dimethyl sulfoxide, stocked 1mM and used at 1µM in culture for 24 hours. The RNA from polysome and free fractions was extracted using DirectZol kit (Zymo). Illumina® TruSeq® Stranded Total RNA Sample Preparation kits

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FIOCRUZ - PARANA - Instituto Carlos Chagas

text: public

characteristic: SRA accession

text: E-MTAB-6254:13H_AGTCAA_L008_R1_001.fastq

characteristic: Submitter Id

text: Lot 0000364977

text: ArrayExpress

text: human

characteristic: common name

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6254:17H_GTCCGC_L008_R1_001.fastq

text: Lot 0000364977

text: ArrayExpress

text: human

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6254:16H_CCGTCC_L008_R1_001.fastq

characteristic: age

text: Lot 0000364977

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6254:14H_AGTTCC_L008_R1_001.fastq

text: Lot 0000364977

text: ArrayExpress

characteristic: cell type

text: human

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-6254:18H_GTGAAA_L008_R1_001.fastq

characteristic: Submitter Id

text: Lot 0000364977

text: ArrayExpress

text: human

characteristic: common name

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lot 1F4166

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: male

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: Lot 2F3051

characteristic: batch

text: ArrayExpress

text: human

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6254:11H_CAGATC_L008_R1_001.fastq

text: Lot 2F3051

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: human

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-6254:10H_GCCAAT_L008_R1_001.fastq

characteristic: Submitter Id

text: Lot 2F3051

text: ArrayExpress

text: human

characteristic: common name

text: normal

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6254:12H_CTTGTA_L008_R1_001.fastq

text: Lot 2F3051

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Florida Whitney Laboratory for Marine Bioscience

text: Five-stage developmental time course transcriptome for the ctenophore Beroe ovata 10 hours post fertilization

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Florida Whitney Laboratory for Marine Bioscience

text: public

characteristic: description

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome


text: public

text: Five-stage developmental time course transcriptome for the ctenophore Beroe ovata 0 hours post fertilization

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome


text: public

text: Five-stage developmental time course transcriptome for the ctenophore Beroe ovata

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome


text: public

text: Five-stage developmental time course transcriptome for the ctenophore Beroe ovata 20 hours post fertilization

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome


text: public

text: Five-stage developmental time course transcriptome for the ctenophore Beroe ovata 6 hours post fertilization

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome


text: public

text: Five-stage developmental time course transcriptome for the ctenophore Beroe ovata juvenile

text: Beroe ovata

text: Beroe ovata

text: Beroe ovata transcriptome


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: Human Cell line (HEK293)

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Leibniz-Institute for Farm Animal Biology (FBN) Institute of Genome Biology

unit: day

characteristic: age

text: Maxgro (Hermitage Genetics) x (German Landrace x Large White)

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: pig

text: Protocols: The slaughter of animals, fasted for 18 hours with an average final body weight of 99 kg (SD: 11.4kg), occurred on 2 slaughter days a week apart by electronic stunning followed by exsanguination. Samples of the subcutaneous adipose tissue were collected and snap frozen in liquid nitrogen within 10 minutes post-mortem (pm) followed by storage at -80°C until RNA isolation. Residual feed intake is one method of measuring feed efficiency. In this study, residual feed intake (RFI) is described as the difference between actual feed intake and predicted feed requirements on product quality of the porcine Longissimus thoracis et lumborum (LTL) muscle. Pigs were placed on test between day 42 and 91 post-weaning, whereby feed intake was recorded daily, and pig weight, back-fat depth and muscle depth was recorded weekly. Average daily feed intake (ADFI) and average daily gain (ADG) from day 42 to day 91 post-weaning were calculated for each pig weekly. RFI was calculated at the end of the test period as the residual from a least squares regression model of ADFI on ADG, metabolic live weight, gender and also all relevant two-way interactions, and the effects of back-fat and muscle depth using the PROC REG procedure in SAS (version 9.4; SAS Inst. Inc., Cary, NC, USA). Total RNA was isolated using Tri-Reagent (Sigma-Alrich, Taufkirchen, Germany), followed by DNase treatment and a column-based purification using the Nucleospin RNA II kit (Macherey-Nagel, Düren, Germany). RNA library preparation was carried out using the TruSeq Stranded mRNA protocol (Illumina).

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Sus scrofa

text: Sus scrofa

text: subcutaneous adipose tissue

characteristic: organism part

text: low residual feed intake

characteristic: phenotype

text: Sus scrofa

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leibniz-Institute for Farm Animal Biology (FBN) Institute of Genome Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: pig

characteristic: common name

text: normal

text: wild type genotype

text: Sus scrofa

text: Sus scrofa

text: subcutaneous adipose tissue

text: low residual feed intake

text: Sus scrofa

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: pig

characteristic: description

text: normal

text: wild type genotype

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: subcutaneous adipose tissue

text: high residual feed intake

text: Sus scrofa

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: pig

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Sus scrofa

text: Sus scrofa

text: subcutaneous adipose tissue

text: high residual feed intake

text: Sus scrofa

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: pig

text: normal

text: wild type genotype

text: Sus scrofa

text: Sus scrofa

text: subcutaneous adipose tissue

characteristic: organism part

text: low residual feed intake

characteristic: phenotype

text: Sus scrofa

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: pig

characteristic: common name

text: normal

text: wild type genotype

text: Sus scrofa

text: Sus scrofa

text: subcutaneous adipose tissue

text: highresidual feed intake

text: Sus scrofa

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: Beroe ovata ctenophore transcriptome assembled from RNA-seq reads from embryos at 0, 6, 10, and 20 hours post fertilization and one juvenile individual

characteristic: description

text: Beroe ovata

characteristic: organism

text: Beroe ovata

text: Beroe ovata 5 stage developmental time course transcriptome

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UC BERKELEY

text: public

tag: Namespace:UC BERKELEY

text: mammal environmental sample

text: mammal environmental sample


characteristic: External Id

text: Max-Planck-Institute of Biochemistry

text: public

text: isolate of Haloquadratum walsbyi from an Australian saltern, deposited as JCM 15065 at the Japan Collection of Microorganisms.

characteristic: isolate

text: Haloquadratum walsbyi

text: Haloquadratum walsbyi

characteristic: strain


text: Max-Planck-Institute of Biochemistry

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: plasmid pLT53-7, a PL6-like plasmid found in an isolate of Haloquadratum walsbyi recovered from Lake Tyrrell (Victoria, Australia). Isolated by M.Dyall-Smith in 2009. Cultures were sent to Dr Eric Allen (Scripps Inst., UCSD).

text: Haloquadratum walsbyi

text: Haloquadratum walsbyi


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: Life Sciences Research Unit

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Life Sciences Research Unit

characteristic: Submitter Id

text: Institute of Reconstructive Neurobiology, University Hospital Bonn, University Bonn

characteristic: cell type

text: house mouse

text: RNA of half brain of 24 months old TREM2 WT, first mouse

text: siCTRL

characteristic: lab host

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: Life Sciences Research Unit

text: public

characteristic: INSDC status

text: house mouse

characteristic: common name

text: RNA of half brain of 24 months old TREM2 WT, second mouse

characteristic: description

text: siCTRL

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 WT, third mouse

text: siCTRL

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: Life Sciences Research Unit

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 WT, fourth mouse

text: siCTRL

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 WT, fifth mouse

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 WT, sixth mouse

text: siCTRL

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 KO, first mouse

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 KO, second mouse

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 KO, third mouse

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 KO, fourth mouse

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 KO, fifth mouse

text: Mus musculus

text: Mus musculus


text: Life Sciences Research Unit

text: public

text: house mouse

text: RNA of half brain of 24 months old TREM2 KO, sixth mouse

text: Mus musculus

text: Mus musculus


text: synthetic construct

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: synthetic construct

text: synthetic construct

text: synthetic construct

characteristic: subject id


text: feces metagenome

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: feces metagenome

text: feces metagenome

text: feces metagenome


text: gut metagenome

text: SC

text: public

characteristic: Submitter Id

text: gut metagenome

text: gut metagenome

text: gut metagenome


text: SSI

text: public

text: BfR

characteristic: collected by

characteristic: collection date

text: Salmonella Typhimurium NGS data from Germany

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica enterica

characteristic: isolate

text: faeces

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

characteristic: serovar

text: Salmonella Typhimurium from food


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: BfR

characteristic: description

text: No

text: Germany

text: not provided

text: Gallus gallus gallus

text: Yes

text: Salmonella enterica enterica

text: product

characteristic: organism

text: Typhimurium

text: Salmonella Typhimurium from food

characteristic: title


text: SSI

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: BfR

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: Gallus gallus gallus

text: Yes

text: Salmonella enterica enterica

text: dust

text: Typhimurium

text: Salmonella Typhimurium from food


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: BfR

text: No

text: Germany

text: not provided

characteristic: host health state

text: Bos primigenius taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica enterica

characteristic: isolate

text: meat (frozen)

characteristic: isolation source host associated

text: Typhimurium

characteristic: serovar

text: Salmonella Typhimurium from food


characteristic: External Id

text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BfR

characteristic: description

text: No

text: Germany

text: not provided

text: Gallus gallus gallus

text: Yes

text: Salmonella enterica enterica

text: meat

characteristic: organism

text: Typhimurium

text: Salmonella Typhimurium from food

characteristic: title