text: Doctoral student, SV-IBI-UPDEPLA-EPFL

text: public

text: ArrayExpress

text: immortalised brown preadipocyte

characteristic: cell line

text: induced brown preadipocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Murine derived brown pre-adipocytes (IBA) were cultured in high-glucose Dulbeccos modified Eagles medium (DMEM, Life Technologies) supplemented with 10% fetal calf serum (FCS, AMIMED), with 100x penicillin/streptomycin/glutamine (100x Pen/Strep/Glutamine, Life Technologies) in a 5% CO2 humidified atmosphere at 37C and maintained at less than 80% confluence before passaging Differentiation of IBAs was induced by exposing confluent cells (Day 0) to DMEM containing 10% FCS supplemented with 0.5 mM 3-isobutyl-1-methylxanthine, 1 uM dexamethasone, 1.96 nM insulin (Sigma, stock solution of 167uM prepared in PBS), 125 uM indomethacin (Sigma, stock solution of 18mM prepared in absolute ethanol), 1nM T3 (3,3,5-Triiodo-L-thyronine sodium salt, Sigma, prepared in 45mM KOH). After exactly 28 hours, the induction medium was replaced with adipocyte differentiation medium consisting of 1nM T3 and 1.96 nM insulin Total RNA was extracted using a Qiagen RNAeasy plus mini kit/ Zymo Direct-zol kit according to manufacturers protocol by using either the RLT buffer lysis system or the TRIzol/Choloroform extraction procedure (Sigma) respectively. The RNA concentration and quality was determined using a nanodrop (1.8 A260/A280 2.2) and by visual inspection of separated bands on Fragment Analyzer (Advanced Analytical). Illumina Truseq RNA sample preparation kit v2 protocol (Illumina, USA) was followed using 500 ng of RNA per sample as starting material. Libraries were checked for quality and quantified using the Bioanalyzer 2100 (Agilent, USA), before being sequenced (single end sequencing at UNIL; and GECF, EPFL). Two libraries (technical replicates 1 and 2) were prepared according to the un-stranded Illumina Truseq RNA sample preparation kit v2 protocol while the second biological replicate was prepared using the stranded protocol.

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

characteristic: progenitor cell type

text: Mus musculus


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Doctoral student, SV-IBI-UPDEPLA-EPFL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: immortalised brown preadipocyte

text: brown preadipocyte

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title

type: has member


text: Doctoral student, SV-IBI-UPDEPLA-EPFL

text: public

text: ArrayExpress

text: immortalised brown preadipocyte

characteristic: cell line

text: maturing brown adipocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

text: Mus musculus


text: Doctoral student, SV-IBI-UPDEPLA-EPFL

text: public

text: ArrayExpress

text: immortalised brown preadipocyte

text: mature brown adipocyte

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

characteristic: progenitor cell type

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

tag: Namespace:Leeds MRC Medical Bioinformatics Centre

text: fibroblast

text: human

text: PRPF31001 (PRPF31 fibroblast)

characteristic: disease

text: severe

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: fibroblast

text: human

text: PRPF31002 (PRPF31 fibroblast)

text: very severe

text: Homo sapiens

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fibroblast

text: human

text: PRPF31003 (normal fibroblast)

characteristic: description

text: normal

text: unaffected

text: Homo sapiens

text: control

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: fibroblast

characteristic: cell type

text: human

text: PRPF31004 (normal fibroblast)

text: normal

text: unaffected

text: Homo sapiens

characteristic: organism

text: control

text: wildtype

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: fibroblast

text: human

characteristic: common name

text: PRPF31005 (PRPF31 fibroblast)

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: fibroblast

text: human

text: PRPF31006 (PRPF31 fibroblast)

characteristic: disease

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: fibroblast

text: human

text: PRPF31007 (normal fibroblast)

text: normal

text: unaffected

characteristic: disease severity

text: Homo sapiens

text: control

characteristic: patient id

text: wildtype

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: fibroblast

text: human

text: PRPF31008 (PRPF31 fibroblast)

text: very mild

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fibroblast

text: human

text: PRPF31009 (normal fibroblast)

text: normal

text: unaffected

text: Homo sapiens

text: control

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RPE

text: human

text: PRPF31010 (normal RPE)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: RPE

text: human

text: PRPF31011 (normal RPE)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

characteristic: cell type

text: human

text: PRPF31012 (PRPF31 RPE)

characteristic: description

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

text: PRPF31013 (PRPF31 RPE)

text: severe

text: Homo sapiens

characteristic: organism

text: c.1115_1125 del11

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

characteristic: common name

text: PRPF31014 (normal RPE)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

text: PRPF31015 (PRPF31 RPE)

characteristic: disease

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31016 (normal iPSC)

text: normal

text: unaffected

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: wildtype

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31017 (normal iPSC)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: iPSC

text: human

text: PRPF31018 (normal iPSC)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: iPSC

text: human

text: PRPF31019 (normal iPSC)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: iPSC

text: human

text: PRPF31020 (normal iPSC)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

characteristic: cell type

text: human

text: PRPF31021 (normal iPSC)

characteristic: description

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31022 (normal iPSC)

text: normal

text: unaffected

text: Homo sapiens

characteristic: organism

text: wildtype

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

characteristic: common name

text: PRPF31023 (normal iPSC)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31024 (normal iPSC)

text: normal

characteristic: disease

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31025 (PRPF31 iPSC)

text: severe

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31026 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: iPSC

text: human

text: PRPF31027 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: iPSC

text: human

text: PRPF31028 (PRPF31 iPSC)

text: very severe

text: Homo sapiens

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: iPSC

text: human

text: PRPF31029 (PRPF31 iPSC)

text: very severe

text: Homo sapiens

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

characteristic: cell type

text: human

text: PRPF31030 (PRPF31 iPSC)

characteristic: description

text: very severe

text: Homo sapiens

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31031 (PRPF31 iPSC)

text: moderate

text: Homo sapiens

characteristic: organism

text: c.1115_1125 del11

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

characteristic: common name

text: PRPF31032 (PRPF31 iPSC)

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31033 (PRPF31 iPSC)

characteristic: disease

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31034 (PRPF31 iPSC)

text: severe

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31035 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: iPSC

text: human

text: PRPF31036 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: iPSC

text: human

text: PRPF31037 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: iPSC

text: human

text: PRPF31038 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

characteristic: cell type

text: human

text: PRPF31039 (PRPF31 iPSC)

characteristic: description

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31040 (PRPF31 iPSC)

text: severe

text: Homo sapiens

characteristic: organism

text: 522-27+IVS+1 to +10

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

characteristic: common name

text: PRPF31041 (PRPF31 iPSC)

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: iPSC

text: human

text: PRPF31042 (PRPF31 iPSC)

characteristic: disease

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

text: PRPF31058 (normal RPE)

text: normal

text: unaffected

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: wildtype

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

text: PRPF31059 (normal RPE)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: RPE

text: human

text: PRPF31060 (normal RPE)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RPE

text: human

text: PRPF31061 (PRPF31 RPE)

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: RPE

text: human

text: PRPF31062 (PRPF31 RPE)

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

characteristic: cell type

text: human

text: PRPF31063 (PRPF31 RPE)

characteristic: description

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

text: PRPF31064 (PRPF31 RPE)

text: severe

text: Homo sapiens

characteristic: organism

text: c.1115_1125 del11

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

characteristic: common name

text: PRPF31065 (PRPF31 RPE)

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: RPE

text: human

text: PRPF31066 (PRPF31 RPE)

characteristic: disease

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

text: PRPF31067 (normal PR_D150)

text: normal

text: unaffected

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: wildtype

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

text: PRPF31068 (normal PR_D150)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: PRPF31069 (normal PR_D150)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: PRPF31070 (normal PR_D150)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: PRPF31071 (normal PR_D150)

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: cell type

text: human

text: PRPF31072 (normal PR_D150)

characteristic: description

text: normal

text: unaffected

text: Homo sapiens

text: wildtype

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

text: PRPF31073 (PRPF31 PR_D150)

text: severe

text: Homo sapiens

characteristic: organism

text: c.1115_1125 del11

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

characteristic: common name

text: PRPF31074 (PRPF31 PR_D150)

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

text: PRPF31075 (PRPF31 PR_D150)

characteristic: disease

text: severe

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

text: PRPF31076 (PRPF31 PR_D150)

text: severe

characteristic: disease severity

text: Homo sapiens

characteristic: patient id

text: 522-27+IVS+1 to +10

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leeds MRC Medical Bioinformatics Centre

text: public

text: human

text: PRPF31077 (PRPF31 PR_D150)

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: PRPF31078 (PRPF31 PR_D150)

text: severe

text: Homo sapiens

text: 522-27+IVS+1 to +10

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: PRPF31079 (PRPF31 PR_D150)

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: PRPF31080 (PRPF31 PR_D150)

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: Leeds MRC Medical Bioinformatics Centre

text: public

characteristic: cell type

text: human

text: PRPF31081 (PRPF31 PR_D150)

characteristic: description

text: moderate

text: Homo sapiens

text: c.1115_1125 del11

text: Homo sapiens


text: URMITE

text: public

characteristic: collection date

text: Mycobacterium simulans strain FI-09026 was isolated from the stuptum of a Somali patient diagnosed with cavitary pulmonary disease

text: Homo Sapiens

characteristic: host scientific name

text: Sputum

characteristic: isolation source

text: Mycobacterium simulans

characteristic: organism

text: Mycobacterium simulans

characteristic: strain

text: Mycobacterium simulans strain FI-09026 genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MD ANDERSON CANCER CENTER

text: public

tag: Namespace:MD ANDERSON CANCER CENTER

text: human

characteristic: common name

text: human

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: human feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: N: 3294592.22

unit: DD

characteristic: geographic location (latitude)

text: E: 270857.63

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Understanding the gut microbiome in melanoma patients - WGS

characteristic: project name

text: Homo sapiens

text: WGS

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MD ANDERSON CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: human

text: human gut

text: human feces

text: USA

text: N: 3294592.22

text: E: 270857.63

text: human-gut

text: metagenome

text: Homo sapiens

text: Homo sapiens

text: WGS

text: Understanding the gut microbiome in melanoma patients


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MD ANDERSON CANCER CENTER

text: public

text: human

characteristic: common name

text: human

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: human feces

characteristic: environment (material)

text: USA

text: N: 3294592.22

text: E: 270857.63

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

text: MD ANDERSON CANCER CENTER

text: public

text: human

text: human

text: human gut

text: human feces

text: USA

characteristic: geographic location (country and/or sea)

text: N: 3294592.22

characteristic: geographic location (latitude)

text: E: 270857.63

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

characteristic: sequencing method


characteristic: External Id

text: MD ANDERSON CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

text: Understanding the gut microbiome of germ free mice receiving fecal transplants


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MD ANDERSON CANCER CENTER

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: Fiocruz-IAM

text: public

text: Aetae

characteristic: description

text: Ochlerotatus taeniorhynchus

text: Ochlerotatus taeniorhynchus

text: Aetae

characteristic: title


text: public

tag: Namespace:Department of Plant and Microbial Biology University of Zurich

text: ArrayExpress

characteristic: broker name

text: Protocols: To isolate random clones from evolved lineages, we streaked out an aliquot of the final day freezer stocks of the experimental evolution onto LB plates. After overnight incubation at 37C, we randomly picked five colonies from each evolved lineage (i.e. 200 clones in total). To assess the variation in growth and pyoverdine production of these evolved clones, we measured their performance under the treatment conditions they experienced during experimental evolution in 3-fold replication, in the same way we did for the population-level analysis. Moreover, we performed an in-depth phenotypic analysis for 16 randomly picked single clones (four per drug treatment) that were selected for sequencing Experimental evolution took place in 190 l iron-limited human serum distributed on the inner wells of a 96-well plate. We exposed wildtype cultures of PAO1 to experimental evolution for a period of 20 days under five different selective regimes in eight-fold replication each. We had a no-drug control treatment in addition to a low and a high concentration drug treatment for both gallium and flucytosine. The concentrations used were inferred from the dose-response curves, and were 50 M and 280 M for gallium and 75 M and 1 mM for flucytosine. We used the GenElute Bacterial Genomic DNA kit (Sigma Aldrich) for DNA isolation DNA concentrations were assayed using the Quantifluor dsDNA sample kit (Promega) and samples were sent to the Functional Genomics Center Zurich for library preparation (Nextera XT DNA Library Prep Kit)

text: wild type genotype

characteristic: genotype

text: 190 microliter iron-limited human serum

characteristic: growth condition

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain


characteristic: External Id

text: Department of Plant and Microbial Biology University of Zurich

characteristic: INSDC center name

text: public

text: ArrayExpress

text: wild type genotype

text: 190 microliter iron-limited human serum

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Auckland University of Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Auckland University of Technology

characteristic: collection date

text: Atacama robotic drill sample, site 01, desert pavement, depth 10-20cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

text: Microbial life in desert soil horizons and recovery of genetic bio-signatures using an autonomous rover in a Mars-analogue environment

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Atacama robotic drill sample, site 01, desert pavement, depth 30-47cm

characteristic: description

text: desert

text: desert pavement

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Atacama robotic drill sample, site 01, desert pavement, depth 47-58cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama robotic drill sample, site 01, desert pavement, depth 58-68cm

text: desert

text: desert pavement

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama robotic drill sample, site 02, desert pavement, depth 0cm

characteristic: description

text: desert

text: desert pavement

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama robotic drill sample, site 03, desert pavement, depth 20-46cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama robotic drill sample, site 06A, desert pavement, depth 0cm

text: desert

text: desert pavement

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama robotic drill sample, site 06A, desert pavement, depth 10cm

characteristic: description

text: desert

text: desert pavement

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama robotic drill sample, site 06A, desert pavement, depth 30cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama robotic drill sample, site 08, playa, depth 60-80cm

text: desert

text: alkaline flat

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama robotic drill sample, site 11B, playa, depth 0cm

characteristic: description

text: desert

text: alkaline flat

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama robotic drill sample, site 11B, playa, depth 0-30cm

text: desert

characteristic: environment (biome)

text: alkaline flat

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama manual soil pit sample, site 01, desert pavement, depth 0cm

text: desert

text: desert pavement

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama manual soil pit sample, site 01, desert pavement, depth 10cm

characteristic: description

text: desert

text: desert pavement

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama manual soil pit sample, site 01, desert pavement, depth 20cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama manual soil pit sample, site 02B, desert pavement, depth 0cm

text: desert

text: desert pavement

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama manual soil pit sample, site 02B, desert pavement, depth 10cm

characteristic: description

text: desert

text: desert pavement

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama manual soil pit sample, site 02B, desert pavement, depth 20cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: Microbial life in desert soil horizons and recovery of genetic bio-signatures using an autonomous rover in a Mars-analogue environment

text: uncultured prokaryote

text: Illumina Miseq

text: soil


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama manual soil pit sample, site 02B, desert pavement, depth 30cm

text: desert

text: desert pavement

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama manual soil pit sample, site 06A, desert pavement, depth 0cm

characteristic: description

text: desert

text: desert pavement

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama manual soil pit sample, site 06A, desert pavement, depth 10cm

text: desert

characteristic: environment (biome)

text: desert pavement

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama manual soil pit sample, site 08, playa, depth 10cm

text: desert

text: alkaline flat

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama manual soil pit sample, site 08, playa, depth 30cm

characteristic: description

text: desert

text: alkaline flat

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama manual soil pit sample, site 08, playa, depth 50cm

text: desert

characteristic: environment (biome)

text: alkaline flat

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama manual soil pit sample, site 08, playa, depth 70cm

text: desert

text: alkaline flat

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atacama manual soil pit sample, site 09, playa, depth 0cm

characteristic: description

text: desert

text: alkaline flat

text: soil

text: Chile

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Illumina Miseq

text: soil

characteristic: title


text: Auckland University of Technology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atacama manual soil pit sample, site 11B, playa, depth 0cm

text: desert

characteristic: environment (biome)

text: alkaline flat

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: uncultured prokaryote

text: uncultured prokaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Auckland University of Technology

text: public

text: Atacama manual soil pit sample, site 11B, playa, depth 20cm

text: desert

text: alkaline flat

text: soil

text: Chile

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

characteristic: project name

text: uncultured prokaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Medicum

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: sewage

characteristic: bio material

text: Anu Wicklund

characteristic: collected by

characteristic: collection date

text: Bacteriophage that infects Yersinia enterocolitica serotype O:9 strains

characteristic: description

text: Yersinia enterocolitica

characteristic: host scientific name

text: Yersinia phage fHe-Yen9-03

characteristic: organism

text: Yersinia phage fHe-Yen9-03

characteristic: strain

characteristic: title


E-MTAB-6113:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6113:Sample 1

tag: Namespace:Cancer Center Amsterdam, department of Pathology, VU University Medical Center, Amsterdam, The Netherlands

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: no progression to vulvar squamous cell carcinoma after 10 years

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Formalin-fixed, paraffin-embedded (FFPE) tissue samples of 65 vulvar lesions were retrieved from the pathology archives of the Departments of Pathology of the VU University Medical Center (n=26), the Academic Medical Center (n=25), and the Netherlands Cancer Institute / Antoni van Leeuwenhoek Hospital (n=4), Amsterdam, The Netherlands. These included 24 VSCC and 41 high-grade VIN, including 10 pairs of VIN-VSCC (i.e. meaning that both VIN and VSCC were from the same woman). Of the 41 VIN, 14 VIN were of women who did not develop VSCC during a follow-up period of at least 10 years (VIN without VSCC) and 27 VIN were of women with associated VSCC (VIN with VSCC). The mean age of women included in this study was 70 (range 37-95) for carcinomas and 53 (range 21-88) for VIN. Collection, storage and use of archival tissue were performed in compliance with the Code for Proper Secondary Use of Human Tissue in the Netherlands (www.federa.org). DNA from VIN lesions was isolated following either macro- or microdissection of dysplastic regions. For VSCC, whole tissue sections were used. All isolates contained > 70% dysplastic cells. Micro-dissection was performed using the Leica LMD6500 (Leica Microsystems, Wetzlar, Germany) as described before (Wilting et al. 2009, Cancer Res 69:647-655; Weiss et al. 1999, Mol Pathol 52:243-251), with a few modifications (Voorham et al. 2012, Clin Cancer Res 18:4560-4569). Eight micrometer thick sections were cut and mounted on PEN MembraneSlides (Leica). Sections were hydrated, stained with Mayers Hematoxylin and completely dehydrated. Genomic DNA of micro-dissected tissue was extracted after a 5-day incubation period with lysis buffer (ATL buffer, QIAamp DNA microkit [Qiagen, Hilden, Germany]) and daily freshly added proteinase K (200 ng) (Voorham et al. 2012, Clin Cancer Res 18:4560-4569). For macrodissected VIN lesions and VSCC, DNA was isolated using the QIAamp DNA FFPE tissue kit (Qiagen). Concentrations and purity was measured using the Qubit dsDNA BR assay kit (Thermo Fisher Scientific, Waltham, MA, USA) on the Qubit 2.0 Fluorometer (Thermo Fisher Scientific). Samples were prepared using the TruSeq Nano DNA Library Prep Kit (Illumina San Diego, CA, USA) according to the manufacturers instructions

text: vulvar intraepithelial neoplasia

characteristic: disease

characteristic: individual

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-6113:Sample 10

text: Cancer Center Amsterdam, department of Pathology, VU University Medical Center, Amsterdam, The Netherlands

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6113:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 10


E-MTAB-6113:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6113:Sample 11

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 11

characteristic: title


E-MTAB-6113:Sample 12

text: public

text: E-MTAB-6113:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: disease

characteristic: individual

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 12


E-MTAB-6113:Sample 13

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6113:Sample 13

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 13


E-MTAB-6113:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6113:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 14


E-MTAB-6113:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6113:Sample 15

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 15

characteristic: title


E-MTAB-6113:Sample 16

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 16

text: ArrayExpress

text: progression to vulvar squamous cell carcinoma after 10 years

characteristic: clinical information

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Ib

characteristic: disease staging

characteristic: individual

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 16


E-MTAB-6113:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 17

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 17


E-MTAB-6113:Sample 18

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 18

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 18


E-MTAB-6113:Sample 19

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 19

text: ArrayExpress

characteristic: clinical information

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 19

characteristic: title


E-MTAB-6113:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 2

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 2


E-MTAB-6113:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 20


E-MTAB-6113:Sample 21

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 21

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 21


E-MTAB-6113:Sample 22

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6113:Sample 22

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 22

characteristic: title


E-MTAB-6113:Sample 23

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 23

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 23


E-MTAB-6113:Sample 24

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 24

characteristic: Submitter Id

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 24


E-MTAB-6113:Sample 25

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 25

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 25


E-MTAB-6113:Sample 26

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6113:Sample 26

text: ArrayExpress

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 26

characteristic: title


E-MTAB-6113:Sample 27

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 27

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 27


E-MTAB-6113:Sample 28

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 28

characteristic: Submitter Id

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 28


E-MTAB-6113:Sample 29

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6113:Sample 29

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: clinical information

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 29


E-MTAB-6113:Sample 3

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 3

text: ArrayExpress

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 3

characteristic: title


E-MTAB-6113:Sample 30

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 30

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 30


E-MTAB-6113:Sample 31

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

text: Ib

characteristic: disease staging

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 31

text: poorly-differentiated

characteristic: tumor grading


E-MTAB-6113:Sample 32

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 32

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Vulvar Squamous Cell Carcinoma

characteristic: disease

text: Ia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 32

text: poorly-differentiated


E-MTAB-6113:Sample 33

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 33

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

characteristic: individual

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 33

characteristic: title


E-MTAB-6113:Sample 34

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 34

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

text: IIIb

characteristic: disease staging

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 34

text: poorly-differentiated


E-MTAB-6113:Sample 35

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 35

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Vulvar Squamous Cell Carcinoma

text: IIIa

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 35

text: poorly-differentiated

characteristic: tumor grading


E-MTAB-6113:Sample 36

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 36

text: ArrayExpress

text: human

characteristic: description

text: Vulvar Squamous Cell Carcinoma

characteristic: disease

text: Ib

characteristic: individual

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 36

text: moderately-differentiated


E-MTAB-6113:Sample 37

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 37

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

text: Ib

characteristic: disease staging

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 37

characteristic: title

text: poorly-differentiated


E-MTAB-6113:Sample 38

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 38

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Vulvar Squamous Cell Carcinoma

text: IIIa

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 38

text: moderately-differentiated


E-MTAB-6113:Sample 39

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 39

text: ArrayExpress

text: human

characteristic: description

text: Vulvar Squamous Cell Carcinoma

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 39

text: moderately-differentiated

characteristic: tumor grading


E-MTAB-6113:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: clinical information

text: human

text: vulvar intraepithelial neoplasia

characteristic: disease

characteristic: individual

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-6113:Sample 40

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 40

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Vulvar Squamous Cell Carcinoma

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 40

characteristic: title


E-MTAB-6113:Sample 41

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 41

text: ArrayExpress

text: human

characteristic: description

text: Vulvar Squamous Cell Carcinoma

text: IIIb

characteristic: disease staging

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 41

text: moderately-differentiated


E-MTAB-6113:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: clinical information

text: human

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 5


E-MTAB-6113:Sample 6

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 6

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Human papillomavirus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 6


E-MTAB-6113:Sample 7

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 7

text: ArrayExpress

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 7

characteristic: title


E-MTAB-6113:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 8


E-MTAB-6113:Sample 9

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6113:Sample 9

characteristic: age

text: ArrayExpress

characteristic: clinical information

text: human

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Human papillomavirus

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 9


E-MTAB-6113:Sample 42

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 42

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 42


E-MTAB-6113:Sample 43

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 43

text: ArrayExpress

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 43

characteristic: title


E-MTAB-6113:Sample 44

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 44

characteristic: Submitter Id

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 44


E-MTAB-6113:Sample 45

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6113:Sample 45

characteristic: age

text: ArrayExpress

characteristic: clinical information

text: human

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 45


E-MTAB-6113:Sample 46

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 46

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 46


E-MTAB-6113:Sample 47

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 47

text: ArrayExpress

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 47


E-MTAB-6113:Sample 48

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 48

characteristic: Submitter Id

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 48

characteristic: title


E-MTAB-6113:Sample 49

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6113:Sample 49

characteristic: age

text: ArrayExpress

characteristic: clinical information

text: human

text: vulvar intraepithelial neoplasia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 49


E-MTAB-6113:Sample 50

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 50

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: vulvar intraepithelial neoplasia

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 50


E-MTAB-6113:Sample 51

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 51

text: ArrayExpress

text: human

text: vulvar intraepithelial neoplasia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 51


E-MTAB-6113:Sample 52

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 52

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: vulvar intraepithelial neoplasia

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 52


E-MTAB-6113:Sample 53

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6113:Sample 53

characteristic: age

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

characteristic: disease

text: Ia

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 53

characteristic: title


E-MTAB-6113:Sample 54

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 54

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Vulvar Squamous Cell Carcinoma

text: Ib

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 54

text: moderately-differentiated

characteristic: tumor grading


E-MTAB-6113:Sample 55

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 55

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

text: IIIc

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 55

text: moderately-differentiated


E-MTAB-6113:Sample 56

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 56

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: Vulvar Squamous Cell Carcinoma

text: Ib

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 56

text: moderately-differentiated


E-MTAB-6113:Sample 57

characteristic: INSDC first public

text: public

text: E-MTAB-6113:Sample 57

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Vulvar Squamous Cell Carcinoma

characteristic: disease

text: Ib

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 57

characteristic: title

text: moderately-differentiated


E-MTAB-6113:Sample 58

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6113:Sample 58

text: ArrayExpress

text: human

characteristic: common name

text: Vulvar Squamous Cell Carcinoma

text: Ib

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 58

text: moderately-differentiated

characteristic: tumor grading


E-MTAB-6113:Sample 59

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 59

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

text: Ib

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 59

text: moderately-differentiated


E-MTAB-6113:Sample 60

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 60

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: Vulvar Squamous Cell Carcinoma

text: IIIa

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 60

text: well-differentiated


E-MTAB-6113:Sample 61

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6113:Sample 61

text: ArrayExpress

characteristic: broker name

text: human

text: Vulvar Squamous Cell Carcinoma

characteristic: disease

text: Ib

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 61

characteristic: title

text: moderately-differentiated


E-MTAB-6113:Sample 62

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-6113:Sample 62

text: ArrayExpress

text: human

characteristic: common name

text: Vulvar Squamous Cell Carcinoma

text: Ib

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

characteristic: organism part

text: Homo sapiens

text: female

text: Sample 62

text: moderately-differentiated

characteristic: tumor grading


E-MTAB-6113:Sample 63

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6113:Sample 63

text: ArrayExpress

text: human

text: Vulvar Squamous Cell Carcinoma

text: IIIc

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

characteristic: sex

text: Sample 63

text: poorly-differentiated


E-MTAB-6113:Sample 64

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-6113:Sample 64

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: Vulvar Squamous Cell Carcinoma

text: Ib

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 64

text: moderately-differentiated


E-MTAB-6113:Sample 65

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-6113:Sample 65

text: ArrayExpress

characteristic: broker name

text: human

text: Vulvar Squamous Cell Carcinoma

characteristic: disease

text: Ib

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: mammalian vulva

text: Homo sapiens

text: female

text: Sample 65

characteristic: title

text: well-differentiated


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: years

characteristic: age unit

characteristic: anonymized name

text: sample 1A1.Empty

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: true

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: empty control

characteristic: sample type

text: metagenome

text: Time 0

characteristic: timepoint

text: Hygiene products and microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:arm pit

characteristic: body site

text: sample 1A10

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CA:San Diego

text: true

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 1

characteristic: host taxid

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Armpit

characteristic: sample site

text: skin

text: human skin metagenome

text: female

characteristic: sex

text: Volunteer 1

characteristic: subject

text: Time 0

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Missing: Restricted access

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:arm pit

text: sample 1A11

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CA:San Diego

characteristic: geo loc name

text: true

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Volunteer 1

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Armpit

text: skin

characteristic: sample type

text: human skin metagenome

text: female

text: Volunteer 1

text: Time 0

characteristic: timepoint

text: Hygiene products and microbiome

characteristic: title

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:arm pit

characteristic: body site

text: sample 1A12

characteristic: description

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CA:San Diego

text: true

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 1

characteristic: host taxid

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Armpit

characteristic: sample site

text: skin

text: human skin metagenome

text: female

characteristic: sex

text: Volunteer 1

characteristic: subject

text: Time 0

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

characteristic: age unit

characteristic: anonymized name

text: sample 1A2.Empty

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: true

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: empty control

characteristic: sample type

text: metagenome

text: Time 0

characteristic: timepoint

characteristic: title

text: Hygiene products and microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: sample 1A3.Swabblank

characteristic: description

text: TRUE

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: true

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Swabblank

text: metagenome

text: Time 0

text: Hygiene products and microbiome


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

characteristic: age unit

characteristic: anonymized name

text: sample 1A4.Swabblank

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: true

characteristic: host subject id

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: Swabblank

text: metagenome

text: Time 0

text: Hygiene products and microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: Missing: Restricted access

characteristic: age

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of face

characteristic: body site

text: sample 1A5

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CA:San Diego

text: true

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 1

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Face

characteristic: sample site

text: skin

characteristic: sample type

text: human skin metagenome

text: female

characteristic: sex

text: Volunteer 1

characteristic: subject

text: Time 0

characteristic: timepoint

characteristic: title

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of face

text: sample 1A6

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CA:San Diego

characteristic: geo loc name

text: true

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Volunteer 1

characteristic: host subject id

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Face

text: skin

text: human skin metagenome

text: female

text: Volunteer 1

text: Time 0

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Missing: Restricted access

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of face

characteristic: body site

text: sample 1A7

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CA:San Diego

text: true

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 1

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Face

characteristic: sample site

text: skin

characteristic: sample type

text: human skin metagenome

text: female

characteristic: sex

text: Volunteer 1

characteristic: subject

text: Time 0

characteristic: timepoint

characteristic: title

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of face

text: sample 1A8

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CA:San Diego

characteristic: geo loc name

text: true

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Volunteer 1

characteristic: host subject id

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Face

text: skin

text: human skin metagenome

text: female

text: Volunteer 1

text: Time 0

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Missing: Restricted access

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:arm pit

characteristic: body site

text: sample 1A9

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CA:San Diego

text: true

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 1

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Armpit

characteristic: sample site

text: skin

characteristic: sample type

text: human skin metagenome

text: female

characteristic: sex

text: Volunteer 1

characteristic: subject

text: Time 0

characteristic: timepoint

characteristic: title

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of arm

text: sample 1B1

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CA:San Diego

characteristic: geo loc name

text: true

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Volunteer 1

characteristic: host subject id

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Arm

text: skin

text: human skin metagenome

text: female

text: Volunteer 1

text: Time 0

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: sample 1B10.Empty

text: TRUE

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: true

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: empty control

characteristic: sample type

text: metagenome

text: Time 0

characteristic: timepoint

characteristic: title

text: Hygiene products and microbiome


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age unit

characteristic: anonymized name

text: sample 1B11.Empty

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: true

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

text: empty control

text: metagenome

text: Time 0

text: Hygiene products and microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: years

text: sample 1B12.Empty

text: TRUE

text: urban biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: true

characteristic: host subject id

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: empty control

text: metagenome

text: Time 0

text: Hygiene products and microbiome


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Restricted access

characteristic: age

text: years

text: UBERON:skin

characteristic: body habitat

text: UBERON:sebum

characteristic: body product

text: UBERON:skin of arm

characteristic: body site

text: sample 1B2

text: TRUE

text: urban biome

text: human-associated habitat

text: human-skin

text: sebum

text: USA:CA:San Diego

text: true

text: Missing: Restricted access

characteristic: height or length

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: Volunteer 1

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human skin metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: Arm

characteristic: sample site

text: skin

characteristic: sample type

text: human skin metagenome

text: female

characteristic: sex

text: Volunteer 1

characteristic: subject

text: Time 0

characteristic: timepoint

characteristic: title

text: Hygiene products and microbiome

text: Missing: Restricted access


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Restricted access

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of arm

text: sample 1B3

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

characteristic: env package

text: sebum

text: USA:CA:San Diego

characteristic: geo loc name

text: true

text: Missing: Restricted access

text: human

text: Homo sapiens

text: Volunteer 1

characteristic: host subject id

text: human skin metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: Arm

text: skin

text: human skin metagenome

text: female

text: Volunteer 1

text: Time 0

text: Hygiene products and microbiome

text: Missing: Restricted access