characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: phloem

text: directly after stress

text: Populus tremula x Populus alba


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Helmholtz Zentrum Munchen, German Research Center for Environmental Health

characteristic: Submitter Id

unit: day

text: ArrayExpress

characteristic: broker name

text: Protocols: Plants were harvested at noon at the last day of stress treatment (S) and seven days later at the end of the recovery period (R). Leaves (LE1: young leaves n. 4-6, LE2: old leaves n. 9-12 counting from the apex, respectively) were immediately frozen in liquid N2. A stem segment of 10 cm was cut 10 cm above the stem base and immediately frozen in liquid N2. The roots (ROO) were washed three times in water, carefully stripped with filter paper and then also frozen in liquid N2. All material was stored at -80 °C until homogenization. Homogenization of plant materials was performed under liquid N2 with mortar and pestle. The bark containing the phloem tissue (PHL) was removed from the stem section with a scalpel. Young developing xylem tissue (XYL) was obtained by scraping off the first 1-2 mm of the hardwood section. The experiments were performed with wild-type plants of Grey poplar (Populus ✕ canescens [INRA clone 7171-B4]; syn. Populus tremula ✕ Populus alba). Plantlets were amplified by micropropagation under sterile conditions51 and raised for five weeks in 2.2-L pots on a sandy soil (1:1 [v/v] silica sand and Fruhstorfer Einheitserde, initially mixed with slow-release fertilisers: Triabon [Compo] and Osmocote [Scotts Miracle-Gro], 1:1, 10 g L-1 soil; every two weeks fertilised with 0.1% [w/v] Hakaphos Grün [Compo]) in the greenhouse (16/8 h photoperiodicity with supplemental lighting 200-240 μmol photons m-2 s-1 at the canopy level, photosynthetically active radiation [PAR]; day/ night temperature 22 °C/ 18 °C; CO2 concentration 380 μL L-1). Then the plants were moved to phytotron chambers to simulate specific climate scenarios. The control conditions (control380, control500) include ambient or elevated CO2 levels (380 μL L-1 and 500 μL L-1, respectively) with a daily maximum temperature of 27 °C. Plants were kept for 25 days under control conditions before starting the stress treatments for a duration of 22 days. The stress treatments include a periodic and a chronic drought-heat scenario at elevated CO2 levels (500 μL L-1) with a daily maximum temperature of 33 °C. The periodic stress treatment (droughtPER) included three cycles of reduced irrigation (50%, 60% and 70% reduction compared with the controls), each one lasting for six days; between the cycles, there were recovery periods with a duration of two days and a daily maximum temperature of 27 °C. In the chronic stress treatment (droughtCHR), irrigation was gradually reduced for 22 days, down to 70% reduction compared with the controls. After the stress treatment, plants recovered for seven days under control conditions. Total RNA was extracted from 50 mg frozen tissue using the Aurum Total RNA Mini kit (Bio-Rad, Germany) following the manufacturer’s instructions. mRNA-focused libraries (Illumina TruSeq kit)

characteristic: description

text: carbon dioxide; 380 microliter per liter

characteristic: growth condition

text: Populus tremula x Populus alba

characteristic: organism

text: Populus tremula x Populus alba

text: phloem

characteristic: organism part

text: directly after stress

characteristic: sampling time point

text: Populus tremula x Populus alba

characteristic: title

type: has member


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text: Helmholtz Zentrum Munchen, German Research Center for Environmental Health

text: public

text: ArrayExpress

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: phloem

text: after seven days recovery period

text: Populus tremula x Populus alba


characteristic: ENA-CHECKLIST

text: public

characteristic: age

text: ArrayExpress

text: carbon dioxide; 500 microliter per liter

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: phloem

text: directly after stress

text: Populus tremula x Populus alba


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: phloem

text: after seven days recovery period

text: Populus tremula x Populus alba


characteristic: INSDC first public

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text: ArrayExpress

text: chronic drought environment

characteristic: environmental stress

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: phloem

text: directly after stress

text: Populus tremula x Populus alba


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: chronic drought environment

text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba


text: public

text: ArrayExpress

characteristic: broker name

characteristic: description

text: periodic drought environment

characteristic: growth condition

text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba


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text: ArrayExpress

text: periodic drought environment

text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba


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text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: age

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text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba


characteristic: INSDC center name

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text: public

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text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

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text: directly after stress

text: Populus tremula x Populus alba


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

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text: after seven days recovery period

text: Populus tremula x Populus alba


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: chronic drought environment

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text: Populus tremula x Populus alba

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text: directly after stress

text: Populus tremula x Populus alba


text: public

text: ArrayExpress

characteristic: description

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text: Populus tremula x Populus alba

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text: after seven days recovery period

text: Populus tremula x Populus alba


characteristic: ENA-LAST-UPDATE

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text: periodic drought environment

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

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text: directly after stress

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text: Populus tremula x Populus alba


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text: ArrayExpress

text: periodic drought environment

text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba

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characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

characteristic: age

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text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: xylem

text: directly after stress

text: Populus tremula x Populus alba


characteristic: INSDC first public

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text: public

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text: ArrayExpress

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

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text: Populus tremula x Populus alba


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

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text: directly after stress

text: Populus tremula x Populus alba


text: public

text: ArrayExpress

characteristic: description

characteristic: growth condition

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

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text: after seven days recovery period

text: Populus tremula x Populus alba


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: chronic drought environment

characteristic: environmental stress

text: Populus tremula x Populus alba

characteristic: organism

text: Populus tremula x Populus alba

text: xylem

text: directly after stress

text: Populus tremula x Populus alba


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: chronic drought environment

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: xylem

characteristic: organism part

text: after seven days recovery period

characteristic: sampling time point

text: Populus tremula x Populus alba


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: periodic drought environment

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: xylem

text: directly after stress

text: Populus tremula x Populus alba

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: periodic drought environment

text: Populus tremula x Populus alba

text: Populus tremula x Populus alba

text: xylem

text: after seven days recovery period

text: Populus tremula x Populus alba


text: GSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mabuya sp. NRPS-2014

text: Mabuya sp. NRPS-2014


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: malaria parasite P. vivax

characteristic: common name

text: Plasmodium vivax

text: Plasmodium vivax

characteristic: subject id


characteristic: ENA-LAST-UPDATE

text: UPSC

text: public

text: thale cress

text: stable transgenic line - stratified at 4 degrees C for 2 days in darkness - grown for 14 days on 1/2 MS - 16h light / 8h dark at 22 degrees C - 3 g seedlings have been used for ChIP - biological replicate 1

characteristic: description

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: UPSC

text: public

text: thale cress

text: stable transgenic line - stratified at 4 degrees C for 2 days in darkness - grown for 14 days on 1/2 MS - 16h light / 8h dark at 22 degrees C - 3 g seedlings have been used for ChIP - biological replicate 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

text: UPSC

text: public

text: thale cress

text: BPC6 stable transgenic line - stratified at 4 degrees C for 2 days in darkness - grown for 14 days on 1/2 MS - 16h light / 8h dark at 22 degrees C - 3 g seedlings have been used for ChIP - biological replicate 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: External Id

text: UPSC

text: public

text: thale cress

text: BPC6 stable transgenic line - stratified at 4 degrees C for 2 days in darkness - grown for 14 days on 1/2 MS - 16h light / 8h dark at 22 degrees C - 3 g seedlings have been used for ChIP - biological replicate 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


Vibrio tapetis IS1

text: University of Brest

text: public

text: Vibrio tapetis IS1

tag: Namespace:University of Brest

characteristic: collection date

text: Venerupis philippinarum

text: France

characteristic: geographic location (country and/or sea)

text: Landeda

characteristic: geographic location (region and locality)

text: Vibrio tapetis IS1

characteristic: isolate

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis

characteristic: sub species

characteristic: title


Vibrio tapetis IS5

text: University of Brest

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vibrio tapetis IS5

text: Venerupis philippinarum

text: France

text: Landeda

text: Vibrio tapetis IS5

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis IS7

characteristic: ENA-LAST-UPDATE

text: University of Brest

text: public

text: Vibrio tapetis IS7

characteristic: Submitter Id

text: Venerupis philippinarum

text: France

text: Quiberon

text: Vibrio tapetis IS7

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis IS8

text: University of Brest

text: public

text: Vibrio tapetis IS8

text: Polititapes aureus

characteristic: description

text: France

text: Quiberon

text: Vibrio tapetis IS8

text: Vibrio tapetis subsp. tapetis

characteristic: organism

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis IS9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Brest

text: public

text: Vibrio tapetis IS9

text: Cerastoderma edule

text: France

text: Quiberon

text: Vibrio tapetis IS9

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis RP2-3

characteristic: External Id

text: University of Brest

text: public

text: Vibrio tapetis RP2-3

characteristic: collection date

text: Venerupis philippinarum

text: France

text: Landeda

text: Vibrio tapetis RP2-3

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis RP8-17

text: University of Brest

text: public

text: Vibrio tapetis RP8-17

text: Venerupis philippinarum

text: France

characteristic: geographic location (country and/or sea)

text: Brouennou

characteristic: geographic location (region and locality)

text: Vibrio tapetis IS7

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis RP9-7

text: University of Brest

text: public

text: Vibrio tapetis RP9-7

text: Venerupis philippinarum

text: France

text: Brouennou

text: Vibrio tapetis IS8

characteristic: isolate

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis

characteristic: sub species


Vibrio tapetis RP11-2

text: University of Brest

characteristic: INSDC center name

text: public

text: Vibrio tapetis RP11-2

text: Venerupis philippinarum

text: France

text: Brouennou

text: Vibrio tapetis RP11-2

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis

characteristic: title


Vibrio tapetis GDE

text: University of Brest

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Vibrio tapetis GDE

text: Dosinia exoleta

text: France

text: Landeda

text: Vibrio tapetis GDE

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis

text: GDE


Vibrio tapetis GTR-I

text: University of Brest

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vibrio tapetis GTR-I

text: Polititapes rhomboides

text: France

text: Glenan islands

text: Vibrio tapetis GTR-I

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis

text: GTR-I


Vibrio tapetis P16B

characteristic: ENA-LAST-UPDATE

text: University of Brest

text: public

text: Vibrio tapetis P16B

characteristic: Submitter Id

text: Venerupis philippinarum

text: France

text: Morbihan gulf

text: Vibrio tapetis P16B

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis UK6

text: University of Brest

text: public

text: Vibrio tapetis UK6

text: Venerupis philippinarum

characteristic: description

text: United Kingdom

text: England

text: Vibrio tapetis UK6

text: Vibrio tapetis subsp. tapetis

characteristic: organism

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis RD0705

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Brest

text: public

text: Vibrio tapetis RD0705

text: Venerupis decussata

text: United Kingdom

text: Scotland

text: Vibrio tapetis RD0705

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis HH6087

characteristic: External Id

text: University of Brest

text: public

text: Vibrio tapetis HH6087

characteristic: collection date

text: Hippoglossus hippoglossus

text: Spain

text: Galicia

text: Vibrio tapetis HH6087

text: Vibrio tapetis subsp. britannicus

text: Vibrio tapetis subsp. britannicus

text: tapetis


Vibrio tapetis LP2

text: University of Brest

text: public

text: Vibrio tapetis LP2

text: Symphodus melops

text: Norway

characteristic: geographic location (country and/or sea)

text: Bergen

characteristic: geographic location (region and locality)

text: Vibrio tapetis LP2

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis


Vibrio tapetis CECT4600

text: University of Brest

text: public

text: Vibrio tapetis CECT4600

text: Venerupis philippinarum

text: France

text: Landeda

text: Vibrio tapetis CECT4600

characteristic: isolate

text: Vibrio tapetis subsp. tapetis

text: Vibrio tapetis subsp. tapetis

text: tapetis

characteristic: sub species


characteristic: INSDC center name

text: public

tag: Namespace:EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG)

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycoplasma pneumoniae M129 cells were grown to exponential phase in modified Hayflick medium, washed with PBS and collected in lysis buffer. miRNeasy kit from Qiagen (with in column DNase digestion) In order to obtain transcriptome-wide, the mRNA 5’ ends (TSSs), we amplified cDNA using a random primer by RT-PCR. Specifically RT_read2 at 2.5 µM was hybridized to 5 µg of total RNA by heating to 65 ºC for 5 min and quick chilling on ice in a 11 µl total volume. Retrotranscription was performed by adding 4 μl 5X first-strand buffer, 2 µl 0.1 M DTT, 1 µl RNase OUT (40 units/µl, Promega), 1 µl 10 mM dNTP mix, and 1 µl SuperScript II RT (200 units, Invitrogen) and incubating for 50 min at 42C before inactivation at 70C for 15 min. Once the reaction was finished, RNA was removed by first adding 1 µl of 4 N NaOH during 5 min at 95ºC, then neutralizing it with 2 µl of 1 M Tris•HCl (pH 8). Then we added 1 µl of RNase cocktail (Ambion) and incubated the tube at 37ºC during 30 min. After this, the reaction was brought to 50 µl with H2O and the ssDNA was cleaned with 1 volume of AMPure beads as above. Finally, we eluted with 25 µl of EB and proceeded to the ssDNA ligation. We prepared a 50 µl reaction with 5 µl of 10x buffer, 1 µl of ATP, 2.5 µl of MnCl2, 2 µl of CircLigase (Epicenter), 0.84 µl of 100 µM linker (L_read1_N6) and 15 µl ssDNA (from previously step). This mix was incubated at 65ºC during 120 min, and then the ligase inactivated at 85ºC during 15 min. The reaction was cleaned with 1 volume AMPure beads as above and eluted with 25 µl of EB. The final step involved a PCR reaction in order to introduce Illumina sequences and thus prepare the libraries for sequencing. This reaction was performed with 4 µl of 5x Buffer, 0.4 µl of dNTPs, 0.4 µl of Phusion HF polymerase (NEB), 0.5 µM of primers (F_PEu and indexed R_PE) and 5 µl of ssDNA in a 20 µl final reaction volume. We PCR-amplified during 20 cycles (elongation at 60ºC). Each PCR product was checked on a 2% agarose/TAE gel, and once the correct band was obtained (aprox. 250 bp), we repeated the same reaction but in a 50 µl final volume. The PCR was cleaned and selected by size using AMPure beads (as above), and quantified by qPCR for the ultrasequencing process. Oligos: RT_read2 CAGACGTGTGCTCTTCCGATCNNNNNN L_read1 [Phos]NNNAGATCGGAAGAGCGTCGTGTAG[SpcC3] F_PEu AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC*T R_PEi6 CAAGCAGAAGACGGCATACGAGATATTGGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC R_PEi12 CAAGCAGAAGACGGCATACGAGATTACAAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC

text: wild type genotype

characteristic: genotype

text: modified Hayflick medium for 6 hours

characteristic: growth condition

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

characteristic: replicate

text: Mycoplasma pneumoniae

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: wild type genotype

text: modified Hayflick medium for 6 hours

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IPK-Gatersleben

text: public

text: thale cress

characteristic: common name

text: T-DNA insertion line shoot tip recovery

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage rank

text: shoot tip

characteristic: tissue type

text: SALK_98205 phase 3


text: IPK-Gatersleben

characteristic: INSDC center name

text: public

text: thale cress

text: T-DNA insertion line shoot tip cryoprotectant treatment

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot tip

text: SALK_98205 phase 2


text: IPK-Gatersleben

text: public

text: thale cress

text: T-DNA insertion line shoot tip explants

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot tip

text: SALK_98205 phase 1


text: IPK-Gatersleben

text: public

text: thale cress

text: Columbia-0 (WT) shoot tip recovery

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot tip

text: WT phase 3


text: IPK-Gatersleben

text: public

text: thale cress

text: Columbia-0 (WT) shoot tip cryoprotectant treatment

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot tip

text: WT phase 2


text: IPK-Gatersleben

text: public

text: thale cress

text: Columbia-0 (WT) shoot tip explants

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot tip

text: WT phase 1


text: IBERS

text: public

characteristic: collection date

text: sheep

text: RUSITEC

characteristic: environment (biome)

text: Rumen fluid in vessel

characteristic: environment (feature)

text: fluid

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: RUSITEC 39 C (after 13 days adaptation period)

characteristic: isolation and growth condition

text: Ovis aries

text: 27F and 357R

characteristic: pcr primers

text: RUSITEC-LiqMet

characteristic: project name

text: Ovis aries

text: Ion torrent

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBERS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: sheep

characteristic: common name

text: Archaeal communities in sample collected at time 0 from a vessel (RUSITEC) fed a control diet (no supplemented)

characteristic: description

text: RUSITEC

text: Rumen fluid in vessel

text: fluid

text: United Kingdom

text: host-associated

text: metagenome

text: Ovis aries

characteristic: organism

text: 27F and 357R

text: RUSITEC-LiqMet

text: Ovis aries

text: Ion torrent

characteristic: title


text: IBERS

characteristic: INSDC center name

text: public

characteristic: collection date

text: sheep

text: Archaeal communities in sample collected at time 2 from a vessel (RUSITEC) fed a control diet (no supplemented)

text: RUSITEC

characteristic: environment (biome)

text: Rumen fluid in vessel

characteristic: environment (feature)

text: fluid

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: isolation and growth condition

text: Ovis aries

text: 27F and 357R

text: RUSITEC-LiqMet

text: Ovis aries

text: Ion torrent


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBERS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sheep

text: Archaeal communities in sample collected at time 4 from a vessel (RUSITEC) fed a control diet (no supplemented)

text: RUSITEC

text: Rumen fluid in vessel

text: fluid

text: United Kingdom

text: host-associated

text: metagenome

text: Ovis aries

text: 27F and 357R

characteristic: pcr primers

text: RUSITEC-LiqMet

characteristic: project name

text: Ovis aries

text: Ion torrent

characteristic: sequencing method


text: IBERS

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: sheep

characteristic: common name

text: Archaeal communities in sample collected at time 8 from a vessel (RUSITEC) fed a control diet (no supplemented)

characteristic: description

text: RUSITEC

characteristic: environment (biome)

text: Rumen fluid in vessel

characteristic: environment (feature)

text: fluid

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Ovis aries

characteristic: organism

text: 27F and 357R

text: RUSITEC-LiqMet

text: Ovis aries

text: Ion torrent

characteristic: title


E-MTAB-6107:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6107:Sample 1

text: 29.5 to 35.5

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

text: Protocols: This study was approved by the Ethics Committee of University teaching Hospital of “Policlinico-Vittorio Emanuele, University of Catania, (Catania, Italy), trial registration number 49/2015/PO (Register of the Ethics Committee opinions). All methods were performed in accordance with the relevant guidelines and regulations. All participants were asked for and provided their informed consent. We performed a transcriptome analysis on PBMCs of 10 non-mosaic KS patients and 10 aged-matched healthy controls. All KS patients (mean age 32.5±3.0 years) had 47,XXY karyotype as shown by cytogenetic investigation conducted on at least 50 metaphase and five out of ten were treated with testosterone enanthate. Normozoospermic controls (mean age 32.0±3.0 years) had a negative history for genetic disease, normal testicular volume and normal reproductive hormones (FSH, LH, total testosterone) levels. Ten healthy age-matched women (mean age 32.0±2.9 years) were also recruited as female controls. All KS and male and female controls were Italians (Eastern Sicily) Heparinized venous blood sample was withdrawn from each KS and male and female control. Peripheral blood mononuclear cells (PBMCs) were obteined using Ficoll-Paque (Ficoll Plaque PLUS - GE Healtcare Life Sciences, Piscataway, USA). Total RNA was extracted using the standard RNA extraction method with TRIzol (Invitrogen, Carlsbad, CA, USA). Before use, RNA concentration in each sample was assayed with a ND-1000 spectrophotometer (NanoDrop) and its quality assessed with the Agilent 2100 Bioanalyzer with Agilent RNA 6000 nano kit (Agilent Technologies, Santa Clara, CA, USA). Indexed libraries were prepared from 1 µg/ea purified RNA with TruSeq Stranded Total RNA (Illumina) Library Prep Kit according to the manufacturer’s instructions. Libraries were quantified using the Agilent 2100 Bioanalyzer (Agilent Technologies) and pooled such that each index-tagged sample was present in equimolar amounts, with final concentration of the pooled samples of 2bnM

text: normal

characteristic: disease

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Eastern Sicily

characteristic: population

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1


E-MTAB-6107:Sample 10

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6107:Sample 10

characteristic: Submitter Id

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

characteristic: common name

characteristic: description

text: Klinefelter's syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 10


E-MTAB-6107:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6107:Sample 11

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: Klinefelter's syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 11

characteristic: title


E-MTAB-6107:Sample 12

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6107:Sample 12

text: 29.5 to 35.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

text: Klinefelter's syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 12


E-MTAB-6107:Sample 13

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-6107:Sample 13

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: Klinefelter's syndrome

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Eastern Sicily

characteristic: population

text: Homo sapiens

text: male

characteristic: sex

text: Sample 13


E-MTAB-6107:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-6107:Sample 14

characteristic: Submitter Id

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

characteristic: common name

characteristic: description

text: Klinefelter's syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 14


E-MTAB-6107:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6107:Sample 15

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: Klinefelter's syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 15

characteristic: title


E-MTAB-6107:Sample 16

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-6107:Sample 16

text: 29.5 to 35.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

text: Klinefelter's syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 16


E-MTAB-6107:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6107:Sample 17

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: Klinefelter's syndrome

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Eastern Sicily

characteristic: population

text: Homo sapiens

text: male

characteristic: sex

text: Sample 17


E-MTAB-6107:Sample 18

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-6107:Sample 18

characteristic: Submitter Id

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

characteristic: common name

characteristic: description

text: Klinefelter's syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 18


E-MTAB-6107:Sample 19

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6107:Sample 19

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: Klinefelter's syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 19

characteristic: title


E-MTAB-6107:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6107:Sample 2

text: 29.5 to 35.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

text: normal

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 2


E-MTAB-6107:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6107:Sample 20

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: Klinefelter's syndrome

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Eastern Sicily

characteristic: population

text: Homo sapiens

text: male

characteristic: sex

text: Sample 20


E-MTAB-6107:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6107:Sample 3

characteristic: Submitter Id

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

characteristic: common name

characteristic: description

text: normal

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 3


E-MTAB-6107:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6107:Sample 4

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: normal

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 4

characteristic: title


E-MTAB-6107:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6107:Sample 5

text: 29.5 to 35.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

text: normal

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 5


E-MTAB-6107:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6107:Sample 6

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: normal

text: normal

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Eastern Sicily

characteristic: population

text: Homo sapiens

text: male

characteristic: sex

text: Sample 6


E-MTAB-6107:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-6107:Sample 7

characteristic: Submitter Id

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

characteristic: common name

characteristic: description

text: normal

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 7


E-MTAB-6107:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6107:Sample 8

text: 29.5 to 35.5

text: ArrayExpress

text: mononuclear cell

text: human

text: normal

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 8

characteristic: title


E-MTAB-6107:Sample 9

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6107:Sample 9

text: 29.5 to 35.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

text: normal

characteristic: disease

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Eastern Sicily

text: Homo sapiens

text: male

text: Sample 9


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: COPENHAGEN UNIVERSITY

text: public

tag: Namespace:COPENHAGEN UNIVERSITY

characteristic: collection date

text: human

text: Pre

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - RRMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Forward: 5'-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG-3' Reverse: 5'-GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC-3'

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Stool sample - 16S amplicon sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COPENHAGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Pre

characteristic: description

text: organism substance

text: excreta

text: feces

text: Germany

text: stool

text: Multiple Sclerosis - PPMS

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Propionic acid as add-on MS therapy

text: Homo sapiens

text: Illumina Miseq

text: 16S rRNA

text: Stool sample - 16S amplicon sequencing

characteristic: title


text: COPENHAGEN UNIVERSITY

text: public

text: human

text: Pre

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - SPMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Stool sample - 16S amplicon sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COPENHAGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Pre

characteristic: description

text: organism substance

text: excreta

text: feces

text: Germany

text: stool

text: Healthy control

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Propionic acid as add-on MS therapy

text: Homo sapiens

text: Illumina Miseq

text: 16S rRNA

characteristic: target subfragment

text: Stool sample - 16S amplicon sequencing


text: COPENHAGEN UNIVERSITY

text: public

text: human

text: Baseline

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - RRMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

text: Stool sample - 16S amplicon sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COPENHAGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Baseline

characteristic: description

text: organism substance

text: excreta

text: feces

text: Germany

text: stool

text: Multiple Sclerosis - PPMS

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Propionic acid as add-on MS therapy

text: Homo sapiens

text: Illumina Miseq

text: 16S rRNA

characteristic: target gene

text: Stool sample - 16S amplicon sequencing


text: COPENHAGEN UNIVERSITY

text: public

text: human

text: Baseline

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - SPMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: Stool sample - 16S amplicon sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COPENHAGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: After

characteristic: description

text: organism substance

text: excreta

text: feces

text: Germany

text: stool

text: Multiple Sclerosis - RRMS

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Propionic acid as add-on MS therapy

text: Homo sapiens

text: Illumina Miseq

text: 16S rRNA

text: Stool sample - 16S amplicon sequencing

characteristic: title


text: COPENHAGEN UNIVERSITY

text: public

text: human

text: After

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - PPMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Stool sample - 16S amplicon sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COPENHAGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: After

characteristic: description

text: organism substance

text: excreta

text: feces

text: Germany

text: stool

text: Multiple Sclerosis - SPMS

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Propionic acid as add-on MS therapy

text: Homo sapiens

text: Illumina Miseq

text: 16S rRNA

characteristic: target subfragment

text: Stool sample - 16S amplicon sequencing


text: COPENHAGEN UNIVERSITY

text: public

text: human

text: Longitudinal

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - RRMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

text: Stool sample - 16S amplicon sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COPENHAGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Longitudinal

characteristic: description

text: organism substance

text: excreta

text: feces

text: Germany

text: stool

text: Multiple Sclerosis - PPMS

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: Propionic acid as add-on MS therapy

text: Homo sapiens

text: Illumina Miseq

text: 16S rRNA

characteristic: target gene

text: Stool sample - 16S amplicon sequencing


text: COPENHAGEN UNIVERSITY

text: public

text: human

text: Longitudinal

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Multiple Sclerosis - SPMS

characteristic: host disease status

characteristic: host subject id

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: pcr primers

text: Propionic acid as add-on MS therapy

characteristic: project name

text: Homo sapiens

text: Illumina Miseq

characteristic: sequencing method

text: 16S rRNA

characteristic: target subfragment

text: Stool sample - 16S amplicon sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF PHARMACEUTICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUTE OF PHARMACEUTICAL SCIENCES

characteristic: Submitter Id

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: BGI

text: public

characteristic: collection date

text: Rattus norvegicus gut

characteristic: environment (biome)

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 48A


text: BGI

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characteristic: collection date

text: Rattus norvegicus gut

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text: Rattus norvegicus-associated habitat

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text: faeces

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characteristic: geographic location (country and/or sea)

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text: host-associated

text: metagenome

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text: A catalog of the Sprague-Dawley (SD) rat gut metagenome

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 49A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 50A


text: BGI

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text: Rattus norvegicus gut

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characteristic: organism

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 51A

characteristic: title


text: BGI

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characteristic: ENA-CHECKLIST

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characteristic: External Id

text: BGI

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characteristic: geographic location (latitude)

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text: host-associated

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 53A


text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 54A


text: BGI

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characteristic: collection date

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characteristic: geographic location (country and/or sea)

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text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 55A

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characteristic: ENA-CHECKLIST

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text: BGI

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characteristic: investigation type

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 56A


text: BGI

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characteristic: geographic location (latitude)

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text: host-associated

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text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 57A


text: BGI

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characteristic: collection date

text: Rattus norvegicus gut

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text: Rattus norvegicus-associated habitat

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text: faeces

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characteristic: geographic location (country and/or sea)

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text: metagenome

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characteristic: sequencing method

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 58A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: BGI

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characteristic: organism

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 59A

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text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 60A


text: BGI

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characteristic: collection date

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text: Rattus norvegicus-associated habitat

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characteristic: geographic location (country and/or sea)

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text: host-associated

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 61A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 62A


text: BGI

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text: Rattus norvegicus gut

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characteristic: organism

text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 63A

characteristic: title


text: BGI

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characteristic: collection date

text: Rattus norvegicus gut

characteristic: environment (biome)

text: Rattus norvegicus-associated habitat

characteristic: environment (feature)

text: faeces

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text: China

characteristic: geographic location (country and/or sea)

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text: metagenome

characteristic: investigation type

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text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 64A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

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text: A catalog of the Sprague-Dawley (SD) rat gut metagenome

text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 65A


text: BGI

characteristic: INSDC first public

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characteristic: host-associated environmental package

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characteristic: sequencing method

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 66A


text: BGI

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characteristic: collection date

text: Rattus norvegicus gut

characteristic: environment (biome)

text: Rattus norvegicus-associated habitat

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text: faeces

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text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

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characteristic: organism

text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 67A

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: BGI

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characteristic: investigation type

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 68A


text: BGI

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characteristic: geographic location (latitude)

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text: host-associated

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text: gut metagenome

text: gut metagenome

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 69A


text: BGI

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characteristic: collection date

text: Rattus norvegicus gut

characteristic: environment (biome)

text: Rattus norvegicus-associated habitat

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text: faeces

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characteristic: geographic location (country and/or sea)

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characteristic: sequencing method

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 70A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: BGI

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characteristic: organism

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 71A

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text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 72A


text: BGI

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characteristic: collection date

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text: Rattus norvegicus-associated habitat

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characteristic: geographic location (country and/or sea)

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text: host-associated

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 73A


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 74A


text: BGI

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characteristic: organism

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 75A

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characteristic: collection date

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characteristic: environment (biome)

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characteristic: geographic location (country and/or sea)

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 76A


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: BGI

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characteristic: geographic location (latitude)

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text: host-associated

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 77A


text: BGI

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characteristic: INSDC status

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characteristic: sequencing method

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 78A


text: BGI

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characteristic: collection date

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characteristic: geographic location (country and/or sea)

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characteristic: ENA-CHECKLIST

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text: BGI

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text: A catalog of the Sprague-Dawley (SD) rat gut metagenome

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 81A


text: BGI

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characteristic: collection date

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characteristic: geographic location (country and/or sea)

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 82A


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: BGI

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 84A


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characteristic: collection date

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characteristic: geographic location (country and/or sea)

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text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 85A


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: BGI

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characteristic: sequencing method

text: Stool sample from Rattus norvegicus BN/Sprague-Dawley individual : 86A