text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 360

text: Saccharomyces cerevisiae


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Mat a, LYS+ segregant 334

characteristic: sample description

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 355

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 389

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 243

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 391

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 347

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 256

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 251

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 253

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 248

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 247

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 373

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 320

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 387

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 381

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 384

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 383

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 314

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 310

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 312

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 311

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 317

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 315

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 349

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 386

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 266

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 263

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 262

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 259

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 260

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 257

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 377

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 378

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 329

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 279

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 371

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 372

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 252

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 326

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 327

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 261

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 321

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 207

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 323

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 324

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 265

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 390

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 230

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 229

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 227

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 233

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 225

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 270

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 236

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 235

text: Saccharomyces cerevisiae


text: SC

text: public

text: Ryukyu mouse

text: Mus caroli

text: Mus caroli

text: Mus caroli

characteristic: strain


name: E-MTAB-691:PEA1 ovarian cancer cell line

text: CRI

text: public

text: ArrayExpress

characteristic: broker name

text: Presentation

characteristic: clinical history

text: Platinum sensitive

characteristic: clinical information

text: human

text: Protocols: Cell lines were grown in RPMI-1640 + 10% fetal bovine serum + 1x penicillin/streptomycin (all Invitrogen, Paisley, UK) at 37 1C, 5% CO2. RNA was extracted in triplicate from confluent T75s using TRIzol reagent (Invitrogen). Extracted RNA was pooled and DNase treated using the DNAfree kit (Ambion). mRNA was then enriched by binding to oligo dT beads using the uMACS system (Miltenyi Biotech). First and second strand cDNA synthesis were carried out using the Superscript double stranded cDNA synthesis kit (Invitrogen). Half of each cDNA reaction was used for sonication and library preparation.

characteristic: description

text: ovarian carcinoma

characteristic: disease state

text: Patient 1

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: PEA1 ovarian cancer cell line

characteristic: title


name: E-MTAB-691:PEO4 ovarian cancer cell line

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRI

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Second relapse

text: Platinum resistant

text: human

text: ovarian carcinoma

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: PEO4 ovarian cancer cell line

type: has member


name: E-MTAB-691:PEO1 ovarian cancer cell line

text: CRI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: First relapse

text: Platinum sensitive

text: human

text: ovarian carcinoma

text: Patient 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: PEO1 ovarian cancer cell line


name: E-MTAB-691:PEO14 ovarian cancer cell line

text: CRI

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Presentation

text: Platinum sensitive

text: human

characteristic: common name

text: ovarian carcinoma

text: Patient 3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: PEO14 ovarian cancer cell line


name: E-MTAB-691:PEA2 ovarian cancer cell line

text: CRI

text: public

text: ArrayExpress

characteristic: broker name

text: Relapse

characteristic: clinical history

text: Platinum resistant

text: human

text: ovarian carcinoma

text: Patient 1

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: PEA2 ovarian cancer cell line


text: CRUK-CRI

text: public

text: ArrayExpress

text: house mouse

text: Protocols: Samples were prepared by direct perfusion of the tissue with buffered salt solution, followed by % formaldehyde. After 10 minutes, the tissue was removed and diced in 500 mM glycine buffer to neutralize the formaldehyde. After homogenization, the cells were rinsed with PBS. The animal tissues were crosslinked with formaldehyde treatment and chromatin fragmented to an average of 300 bp by sonication. Chromatin from an mass equivalent of 1/4 mouse liver was used for each experiment. Solexa libraries were prepared following the instructions of Illumina (Sample preparation for genomic DNA - version 2.2) with the following modifications. No antibody was added in the immunoprecipitation step. Following the non-ChIP step, DNA was not further fragmented. After end-repair and addition of an 'A' base to the 3-prime ends, the adapters were ligated to the ends of the DNA Fragments using 2 ul of fortyfold diluted 'Adapter oligo mix' in a total reaction volume of 25 ul. Between these steps, the DNA was purified using the DNA Clean-and-Concentrator-5 kit (Zymo Research). Subsequently, the DNA was amplified by 18 cycles of PCR, purified with QIAquick PCR purification Kit, and eluted with 33.5 ul of 10 mM tris buffer at pH7.0. The PCR-product was sized fractionated on 2% agarose gel and a gel slice containing the 200-300 bp fragments was excised. The flowcells were prepared and processed according to the manufacturer's protocols, with single-end sequencing for 36 cycles.

characteristic: description

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


Lactobacillus fermentum S6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MICALIS

text: public

text: Lactobacillus fermentum S6

text: Isolated in Côte d'Ivoire from Sour wort, Tchapalo (Sorghum african beer) processing

text: Cote d'Ivoire

characteristic: geographic location (country and/or sea)

characteristic: isolation source

text: Lactobacillus fermentum

text: Lactobacillus fermentum

text: Lactobacillus fermentum S6 strain complete genome annotated sequence

characteristic: title


Lactobacillus fermentum S13

characteristic: External Id

text: MICALIS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lactobacillus fermentum S13

text: Lactobacillus fermentum S13 complete annotated genome sequence. Isolated in Côte d'Ivoire from Sour wort, Tchapalo (Sorghum african beer) processing

text: Cote d'Ivoire

text: Lactobacillus fermentum

text: Lactobacillus fermentum

text: Lactobacillus fermentum S13 complete genome sequence


Pediococcus acidilactici S7

text: MICALIS

text: public

text: Pediococcus acidilactici S7

characteristic: Submitter Id

text: Isolated in Côte d'Ivoire from sour wort, Tchapalo (Sorghum african beer) processing

characteristic: description

text: Cote d'Ivoire

text: Pediococcus acidilactici

characteristic: organism

text: Pediococcus acidilactici

text: Pediococcus acidilactici S7 complete genome sequence


text: public

text: Parent

characteristic: Relation to Affected

text: horse

characteristic: common name

text: Nimblegen Sequence Capture of Genomic Equus cabbalus (Obligate Carrier and parent to affected:1408) DNA. Capture targets designed on horse genome - Chromosome 26 between genomic positions: 28,942,655-31,942,655bp.

text: Equus caballus

text: Obligate Carrier

characteristic: origin

characteristic: sample

text: Equus caballus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Parent

text: horse

text: Nimblegen Sequence Capture of Genomic Equus cabbalus (Obligate Carrier and parent to affected:1508) DNA. Capture targets designed on horse genome - Chromosome 26 between genomic positions: 28,942,655-31,942,655bp.

text: Equus caballus

text: Obligate Carrier

text: Equus caballus


text: public

text: horse

text: Nimblegen Sequence Capture of Genomic Equus cabbalus (Affected Individual) DNA. Capture targets designed on horse genome - Chromosome 26 between genomic positions: 28,942,655-31,942,655bp.

text: Equus caballus

text: Affected Individual

text: Equus caballus


text: public

text: horse

text: Nimblegen Sequence Capture of Genomic Equus cabbalus (Obligate Carrier) DNA. Capture targets designed on horse genome - Chromosome 26 between genomic positions: 28,942,655-31,942,655bp.

text: Equus caballus

text: Obligate Carrier

text: Equus caballus


characteristic: ENA-CHECKLIST

text: CHINA ACADEMY

text: public

tag: Namespace:CHINA ACADEMY

characteristic: collection date

text: pure culture

characteristic: environment (biome)

text: anearobic bioreactor

characteristic: environment (feature)

text: cell cluster

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: methanogen 5c

characteristic: project name

text: methanogen 5c

text: pyrosequencing

characteristic: sequencing method


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Danio rerio


text: Danio rerio

text: Danio_rerio (zv9)

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio

text: Danio_rerio (zv9)

characteristic: strain


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: StrainOrLine

text: Jackson laboratory

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: mouse Brains where obtained from 8 weeks old mice from the Jackson lab maine USA total RNA extraction using trizol as per manufacturer instructions

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: AKR/J

text: Jackson laboratory

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: AKR/J


text: SC

text: public

characteristic: SRA accession

text: NOD/Ltj

characteristic: Submitter Id

text: Jackson laboratory

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: NOD/Ltj


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: CBA/J

characteristic: StrainOrLine

text: Jackson laboratory

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: CBA/J


text: SC

text: public

text: PWK

text: Jackson laboratory

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: PWK


text: SC

text: public

text: NZO

text: Jackson laboratory

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: NZO


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: A/J

text: Jackson laboratory

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: A/J

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Spretus/EiJ

text: Jackson laboratory

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: Spretus/EiJ


text: SC

text: public

characteristic: SRA accession

text: BALB/cJ

characteristic: Submitter Id

text: Jackson laboratory

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: BALB/cJ


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: WSB

text: Jackson laboratory

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: WSB


text: SC

text: public

text: CAST/EiJ

characteristic: StrainOrLine

text: Jackson laboratory

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: CAST/EiJ


text: SC

text: public

text: LP/J

text: Jackson laboratory

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: LP/J


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: PB_HPRT_100___HyPBase-sc-2010-07-16-241626

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

characteristic: INSDC first public

text: public

text: PB_HPRT_28___HyPBase-sc-2010-07-16-241624

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

characteristic: INSDC last update

text: public

text: PB_HPRT_70___HyPBase-sc-2010-07-16-241625

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: INSDC status

text: PB_HPRT_100___mPBase-sc-2010-07-16-241623

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: SRA accession

text: PB_HPRT_70___mPBase-sc-2010-07-16-241622

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: UH

text: public

text: Scots pine

characteristic: common name

text: Pinus sylvestris inoculated with Heterobasidion annosum

text: Heterobasidion annosum

characteristic: inoculum

text: Pinus sylvestris

text: Pinus sylvestris


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UH

text: public

text: Scots pine

text: Pinus sylvestris after wounding

text: wounded

text: Pinus sylvestris

text: Pinus sylvestris


text: UH

text: public

text: Scots pine

text: healthy uninfected Pinus sylvestris

text: healthy

text: Pinus sylvestris

characteristic: organism

text: Pinus sylvestris


text: UH

text: public

text: Scots pine

text: Pinus sylvestris inoculated with Phlebiopsis gigantea

text: Phlebiopsis gigantea

text: Pinus sylvestris

text: Pinus sylvestris

text: Scots pine interaction with saprotrophic fungi

characteristic: title


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio

text: TL

characteristic: strain


text: SC

text: public

characteristic: StrainOrLine

text: 8 weeks

characteristic: age

characteristic: bio source type

text: The Scripps Research Institute, La Jolla, California, USA

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: Mixed

characteristic: cell type

text: house mouse

text: Protocols: 3 grouped housed male and female mice (C58BL\6J) were euthanized at 8 weeks their vomernasal organs were dissected and the RNA was extracted immediately and stored in RNAlater. RNA was extracted using the RNAeasy kit using a disposable Rance free plastic grinder to homogenize the sample according to manufactor's instructions. All RNA was subsequently quantified with a UV-Vis spectrophotometer and visualized for quality using RNA integrity analysis.

characteristic: description

text: adult

text: Mus musculus

text: Mus musculus

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 8 weeks

text: ArrayExpress

text: Mixed

text: house mouse

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: SC

text: public

text: eastern European house mouse

characteristic: common name

text: Mus musculus musculus

characteristic: organism

text: Mus musculus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles gambiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


Homo sapiens

text: ION

text: public

text: Homo sapiens

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: SC

text: public

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus


text: UU

text: public

unit: week

characteristic: age

text: house mouse

text: mitochondrial DNA purified from liver of a normal C57BL/6 mouse at 30 weeks of age

text: Mus musculus

text: Mus musculus

text: C57BL/6 mouse

characteristic: source


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a mutator mouse at 40 weeks of age

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mutator mouse


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a heterozygous sibling of a mutator mouse at 30 weeks of age

text: Mus musculus

text: Mus musculus

text: Heterozygous mutator mouse


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a heterozygous sibling of a mutator mouse at 40 weeks of age

text: Mus musculus

text: Mus musculus

text: Heterozygous mutator mouse


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a wildtype sibling of a mutator mouse at 30 weeks of age

text: Mus musculus

text: Mus musculus

text: Wildtype mouse


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a wildtype sibling of a mutator mouse at 40 weeks of age

text: Mus musculus

text: Mus musculus

text: Wildtype mouse


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a normal C57BL/6 mouse at 40 weeks of age

text: Mus musculus

text: Mus musculus

text: C57BL/6 mouse


text: UU

text: public

text: house mouse

text: mitochondrial DNA purified from liver of a normal C57BL/6 mouse at 84 weeks of age

text: Mus musculus

text: Mus musculus

text: C57BL/6 mouse


Lambda

text: UU

text: public

text: Lambda

text: house mouse

text: C57BL/6 mtDNA genome inserted into phage lambda

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: SC

text: public

text: Ctenopharyngodon_idella-sc-2010-09-13-9142

text: grass carp

text: Ctenopharyngodon idella

text: Ctenopharyngodon idella


text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: SBSUL

text: public

text: pathogen

characteristic: biotic relation

text: BIOINV

characteristic: broker name

text: liver fluke

text: A single adult fluke derived from a sheep from an abattoir in north Wales

text: animal-associated habitat

characteristic: habitat

text: Ovis aries (Sheep)

characteristic: host

text: natural host

characteristic: host class

text: alive

characteristic: host health disease status

text: Fasciola hepatica

characteristic: sampling date

text: Fasciola hepatica

text: heterotrophy

characteristic: trophic quality


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Confirmed Clones: CH73-345H21 CH73-148I8 CH73-386F9 CH73-165B6 CH73-386H23 CH73-295G4 CH73-334I2 CH73-254E15 CH73-167O17 CH73-384H18 CH73-206H6 CH73-47K21

text: Danio rerio

text: Danio rerio

text: Tuebingen

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

characteristic: common name

text: Confirmed Clones: CH73-89M18 CH73-93B12 CH73-195M20 CH73-67K24 CH73-374L24 CH73-343G10 CH73-244K18 CH73-243M23 CH73-347N14 CH73-386P10 CH73-164D3

characteristic: description

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Tuebingen


text: SC

text: public

text: zebrafish

text: Confirmed Clones: CH73-37E1 CH73-6F11 CH73-84H4 CH73-86J24 CH73-210H2 CH73-215I13 CH73-197J22 CH73-201D20 CH73-201E18 CH73-205C20 CH73-236O7 CH73-248E2

text: Danio rerio

text: Danio rerio

text: Tuebingen


text: SC

text: public

text: zebrafish

text: Confirmed Clones: CH73-275J16 CH73-65O10 CH73-241B2 CH73-230E8 CH73-47A6 CH73-13D18 CH73-164B10 CH73-169E7 CH73-386P18 CH73-387P8 CH73-149K24 CH73-151A12

text: Danio rerio

text: Danio rerio

text: Tuebingen


text: SC

text: public

text: zebrafish

text: Confirmed Clones: CH73-210L17 CH73-220K24 CH73-112D7 CH73-375O18 CH73-68J20 CH73-92O10 CH73-110G8 CH73-348D8 CH73-209B9 CH73-39N16 CH73-26K14

text: Danio rerio

text: Danio rerio

text: Tuebingen


text: SC

text: public

text: zebrafish

text: Confirmed Clones: CH73-277P2 CH73-18L22 CH73-84L18 CH73-282N21 CH73-321F21 CH73-205B4 CH73-380E2 CH73-367H6 CH73-54E6 CH73-358N18 CH73-71B2 CH73-384O16

text: Danio rerio

text: Danio rerio

text: Tuebingen


name: Manduca antennal transcriptome raw 454 data

text: MPICE

text: public

text: tobacco hornworm

text: GS/FLX sequence data generated from a normalized cDNA generated from the antennae of two male and two female adults

text: Manduca sexta

text: Manduca sexta


text: SC

text: public

text: western lowland gorilla

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla


text: SC

text: public

text: western lowland gorilla

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla


text: SC

text: public

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: SC

text: public

text: chimpanzee

text: Pan troglodytes

text: Pan troglodytes


text: SC

text: public

text: pygmy chimpanzee

text: Pan paniscus

text: Pan paniscus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


name: Cultivated rice japonica Nongken-58 genome shotgun

text: NCGR

text: public

text: Japanese rice

characteristic: cultivar

text: Illumina sequencing of rice japonica cv. Nongken-58

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group


text: SC

text: public

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: Xenopus (Silurana) tropicalis


text: SC

text: public

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: Xenopus (Silurana) tropicalis

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


NDama pool 2

text: ROSLIN

text: public

characteristic: Number of Animals

text: NDama

characteristic: Strain

text: NDama pool 2

text: cattle

text: Pooled NDama Genomic DNA

text: Bos taurus

text: Bos taurus

text: NDama Genomic DNA Pool 2

characteristic: title


NDama pool 1

characteristic: External Id

text: ROSLIN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: NDama

text: NDama pool 1

text: cattle

text: Pooled NDama Genomic DNA

text: Bos taurus

text: Bos taurus

text: NDama Genomic DNA Pool 1


NDama pool 3

text: ROSLIN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NDama

text: NDama pool 3

text: cattle

text: Pooled NDama Genomic DNA

text: Bos taurus

text: Bos taurus

text: NDama Genomic DNA Pool 3


NDama pool 4

characteristic: ENA-FIRST-PUBLIC

text: ROSLIN

text: public

text: NDama

text: NDama pool 4

characteristic: Submitter Id

text: cattle

text: Pooled NDama Genomic DNA

text: Bos taurus

text: Bos taurus

text: NDama Genomic DNA Pool 4


Malaria

text: SC

text: public

text: Malaria

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


Malaria 1

text: SC

text: public

text: Malaria 1

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: STRAIN

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: PWK/PhJ

text: eastern European house mouse

text: Mus musculus musculus

characteristic: organism

text: Mus musculus musculus


text: SC

text: public

text: BALB/cJ

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: CAST/EiJ

text: southeastern Asian house mouse

text: Mus musculus castaneus

text: Mus musculus castaneus


text: SC

text: public

text: CBA/J

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: AKR/J

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: A/J

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: WSB/EiJ

text: western European house mouse

text: Mus musculus domesticus

text: Mus musculus domesticus


text: SC

text: public

text: LP/J

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: NZO/HiLtJ

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: Sample Description

text: house mouse

text: Mus musculus

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: NIH

text: public

text: human

text: male

characteristic: gender

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: source

text: Human sample obtained through the NIH Undiagnosed Diseases Program


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: Strain

text: 162033_A1-sc-2011-06-23T09:44:33Z-990717

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: 162033_B1-sc-2011-06-23T09:44:34Z-990718

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: southeastern Asian house mouse

text: Mus musculus castaneus

text: Mus musculus castaneus


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-371:WPMY1 cell culture 1

text: ATCC

characteristic: BioSourceProvider

characteristic: CellLine

text: myofibroblast stromal cell

characteristic: CellType

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTRE FOR

text: public

text: Homo sapiens

characteristic: Organism

text: E-MTAB-371:WPMY1 cell culture 1

tag: Namespace:HELMHOLTZ CENTRE FOR

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Cells were obtained from the ATCC and cultured in DMEM plus 10% fetal bovine serum. Cells were exposed for 6h to the agonist GW501516 (300nM) or DMSO solvent control, after which they were harvested. DMSO was added in a ratio of 1:10000 of the total media volume - in this case, 2 microliter. After stimulation, the cells were fixed by addition of 37% formaldehyde to a final concentration of 1%. Incubation time was 10 min at room temperature. Glycine was added to a final concentration of 125 mM for 5 min. After two washes with ice-cold phosphate-buffered saline, the cells were pelleted for 5 min at 1200 g. Pellets were resuspended in cold hypotonic lysis buffer [5 mM PIPES, pH 8.0, 85 mM KCl, 0.5% (v/v) NP40, and protease inhibitor cocktail (Sigma)] at a ratio of 1 ml per 10^7 cells and incubated on ice for 20 min. Nuclei were pelleted by centrifugation as before and resuspended in radioimmunoprecipitation assay buffer [10 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% (v/v) NP40, 1% sodium deoxycholate, 0.1% (w/v) SDS, 1 mM EDTA, and protease inhibitors] at a ratio of 1 ml per 10^7 nuclei. Soluble chromatin was prepared by sonication with a microtip using a sonifier (S-250D; Branson Ultrasonics Corporation, Danbury, CT) set to 1-s pulse, 2-s pause. Sixty pulses were applied. After centrifugation at 16,000g for 15 min in a tabletop centrifuge, the supernatant was collected. An aliquot was incubated overnight with proteinase K and RNase A at 65C and loaded on a 1% agarose gel to estimate shearing efficiency. The supernatant was precleared by addition of protein A Sepharose beads (Invitrogen), which were previously blocked in radioimmuno-precipitation assay buffer with 1 mg/ml bovine serum albumin, 0.4 mg/ml sonicated salmon sperm DNA (Stratagene), and protease inhibitors, coupled to rabbit IgG (Sigma I5006). After rotation for 1 h at 4C, the beads were removed by centrifugation. The supernatant was used for immunpreciptiations. Four micrograms of antibody were added to 300ul of precleared chromatin corresponding to 3 x 10^6 nuclei and incubated overnight at 4C with mild rotation. After addition of blocked Sepharose beads, incubation time was 1 h at 4C with mild rotation. The beads were washed once with 1 ml of chilled mixed micelle buffer [20 mM Tris, pH 8.1, 150 mM NaCl, 2 mM EDTA, 0.1% (w/v) SDS, and 1% (v/v) Triton X-100], once with buffer 500 [20 mM Tris, pH 8.1, 500 mM NaCl, 2 mM EDTA, 0.1% (w/v) SDS, and 1% (v/v) Triton X-100], twice with LiCl detergent buffer (10 mM Tris, pH 8.1, 250 mM LiCl, 1% (v/v) NP40, 1% (w/v) sodium deoxycholate, and 1 mM EDTA), and twice with room-temperature Tris-EDTA. Complexes were eluted twice with 25ul of elution buffer [1% SDS (w/v) and 100 mM NaHCO3]. Supernatants were pooled; adjusted to 180 mM NaCl, 35 mM Tris, pH 6.5, and 9 mM EDTA; and incubated with 20 microgram of proteinase K and 1ug of RNase A for 65C overnight. DNA was purified using a PCR purification kit (Qiagen, Hilden, Germany).

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: WPMY1 cell culture 1

characteristic: title


text: SC

text: public

text: western European house mouse

characteristic: common name

text: Mus musculus domesticus

characteristic: organism

text: Mus musculus domesticus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SPRET/EiJ

characteristic: STRAIN

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: western wild mouse

text: Mus spretus

text: Mus spretus


text: 6 hours

characteristic: Age

text: embryo

characteristic: DevelopmentalStage

text: SC

text: public

characteristic: INSDC status

text: Danio rerio

characteristic: SRA accession

text: mixed

characteristic: Sex

text: Tupfel long fin

characteristic: StrainOrLine

text: ArrayExpress

text: zebrafish

text: Protocols: Zebrafish embryos or tissues were collected from a Tuefel long fin strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at -70 C Total RNA was extracted using Trizol Reagent (Invitrogen) following the manufacturer's instructions. Pellets were resuspended RNase-free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND-1000 Spectrophotometer (Axon Instruments). Total RNA was made into an RNAseq Illumina library following the manufacturer's protocol including a DNase treatment between to 2 rounds of polyA pull down. The libraries have fragment size of 250 to 300 bp.

text: Danio rerio

text: Danio rerio


text: embryo

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Danio rerio

characteristic: Organism

text: mixed

text: Tuebingen

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at -70 C Total RNA was extracted using Trizol Reagent (Invitrogen) following the manufacturer's instructions. Pellets were resuspended RNase-free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND-1000 Spectrophotometer (Axon Instruments). Total RNA was made into an RNAseq Illumina library following the manufacturer's protocol including a DNase treatment between to 2 rounds of polyA pull down. The libraries have fragment size of 250 to 300 bp.

text: Danio rerio

text: Danio rerio


E-MTAB-308:Zebrafish embryo 1 dpf 2

text: 1 days

text: embryo

text: SC

text: public

text: fertilization

characteristic: InitialTimePoint

text: Danio rerio

characteristic: OrganismPart

text: Tuebingen

text: E-MTAB-308:Zebrafish embryo 1 dpf 2

text: ArrayExpress

text: zebrafish

characteristic: common name

text: Protocols: Zebrafish embyos or tissues were collected from a Tuebingen strain incross and grown at 28 C. Collected samples were snap frozen on dry ice and stored at -70 C Total RNA was extracted using Trizol Reagent (Invitrogen) following the manufacturer's instructions. Pellets were resuspended RNase-free 10 mM Tris pH 7.5 and the RNA was quantified using a NanoDrop ND-1000 Spectrophotometer (Axon Instruments).

characteristic: description

text: Danio rerio

characteristic: organism

text: Danio rerio


E-MTAB-308:Zebrafish embryo 2 dpf 2

text: 2 days

text: embryo

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fertilization

text: Danio rerio

text: Tuebingen

text: E-MTAB-308:Zebrafish embryo 2 dpf 2

text: ArrayExpress

text: zebrafish

text: Danio rerio

text: Danio rerio


E-MTAB-308:Zebrafish embryo 3 dpf 2

text: 3 days

characteristic: Age

text: embryo

characteristic: DevelopmentalStage

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: fertilization

text: Danio rerio

text: Tuebingen

text: E-MTAB-308:Zebrafish embryo 3 dpf 2

text: ArrayExpress

text: zebrafish

text: Danio rerio

text: Danio rerio


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Sample Description

characteristic: Strain

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ATCC number

text: DUNDEE

text: public

characteristic: Submitter Id

text: human

text: HT1080 sarcoma cell line nucleolus associated genomic DNA

text: Homo sapiens

text: Homo sapiens


text: DUNDEE

text: public

text: human

characteristic: common name

text: HT1080 sarcoma cell line whole genomic DNA

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

text: public

text: 653STDY5062310-sc-2011-04-05T13:27:09Z-1081404

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: 653STDY5062313-sc-2011-04-05T13:27:11Z-1081407

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio


text: Danio rerio

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 653STDY5062312-sc-2011-04-05T13:27:10Z-1081406

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

characteristic: External Id

text: SC

text: public

text: 653STDY5062315-sc-2011-04-05T13:27:12Z-1081409

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

characteristic: INSDC center name

text: public

text: 653STDY5062314-sc-2011-04-05T13:27:11Z-1081408

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

characteristic: INSDC first public

text: public

text: 653STDY5062319-sc-2011-04-05T13:27:14Z-1081413

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: 653STDY5062318-sc-2011-04-05T13:27:13Z-1081412

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Exome

text: TL

text: SL3_01_D12-sc-2011-04-11T09:29:43Z-1119764

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: 653STDY5062342-sc-2011-04-05T13:27:25Z-1081436

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_B12-sc-2011-04-11T09:29:42Z-1119761

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_G11-sc-2011-04-11T09:29:40Z-1119754

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619464-sc-2011-04-05T15:08:55Z-1007121

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619465-sc-2011-04-05T15:08:55Z-1007122

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619462-sc-2011-04-05T15:08:54Z-1007119

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619463-sc-2011-04-05T15:08:54Z-1007120

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619468-sc-2011-04-05T15:08:57Z-1007125

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619469-sc-2011-04-05T15:08:58Z-1007126

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619467-sc-2011-04-05T15:08:57Z-1007124

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619470-sc-2011-04-05T15:08:59Z-1007127

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619471-sc-2011-04-05T15:08:59Z-1007128

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_H12-sc-2011-04-11T09:29:46Z-1119773

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_D1-sc-2011-04-11T09:28:51Z-1119594

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_G12-sc-2011-04-11T09:29:45Z-1119771

text: zebrafish

text: Danio rerio

text: Danio rerio


text: SC

text: public

text: TL

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_G1-sc-2011-04-11T09:28:53Z-1119597

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_H1-sc-2011-04-11T09:28:53Z-1119598

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_B2-sc-2011-04-11T09:28:55Z-1119600

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_F2-sc-2011-04-11T09:28:57Z-1119607

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_E10-sc-2011-04-11T09:29:35Z-1119737

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

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text: 653STDY5062354-sc-2011-04-05T13:27:29Z-1081448

text: zebrafish

text: Danio rerio

text: Danio rerio


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text: Danio rerio

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characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: Danio rerio

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characteristic: ENA-FIRST-PUBLIC

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characteristic: SRA accession

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characteristic: Sample Description

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characteristic: Strain

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text: zebrafish

text: Danio rerio

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text: adult

characteristic: DevelopmentalStage

text: Organism: Canis familiaris

characteristic: Experimental Factor: ORGANISM

text: OrganismPart: liver

characteristic: Experimental Factor: ORGANISMPART

text: CRUK-CRI

text: public

characteristic: Individual

text: Canis familiaris

characteristic: Organism

text: liver

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text: male

characteristic: Sex

text: ArrayExpress

characteristic: broker name

text: dog

text: Canis lupus familiaris

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text: adult

characteristic: ENA-FIRST-PUBLIC

text: Organism: Monodelphis domestica

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text: CRUK-CRI

characteristic: INSDC last update

text: public

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text: mdo

text: Monodelphis domestica

text: liver

characteristic: SRA accession

text: male

characteristic: Submitter Id

text: ArrayExpress

text: gray short-tailed opossum

text: Monodelphis domestica

text: Monodelphis domestica


text: adult

characteristic: ENA-LAST-UPDATE

text: Organism: Mus musculus

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characteristic: External Id

text: CRUK-CRI

text: public

text: Mus musculus

text: liver

text: male

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


text: adult

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text: Organism: Gallus gallus

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text: CRUK-CRI

characteristic: INSDC center name

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text: public

text: gga

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text: liver

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text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus


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characteristic: Experimental Factor: ORGANISM

text: OrganismPart: liver

characteristic: Experimental Factor: ORGANISMPART

text: CRUK-CRI

text: public

characteristic: Individual

text: Gallus gallus

text: liver

text: female

text: ArrayExpress

text: chicken

text: Gallus gallus

text: Gallus gallus


text: adult

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text: OrganismPart: liver

text: CRUK-CRI

text: public

text: Monodelphis domestica

characteristic: Organism

text: liver

characteristic: OrganismPart

text: male

characteristic: Sex

text: ArrayExpress

text: gray short-tailed opossum

text: Monodelphis domestica

text: Monodelphis domestica


text: SC

characteristic: INSDC last update

text: public

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Sample Description

characteristic: Strain

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Age

characteristic: Age

text: Department of Surgery, University of Pennsylvania

characteristic: BioSourceProvider

text: normal

characteristic: DiseaseState

text: 45 years

characteristic: Experimental Factor: Age

text: Immunoprecipitate: input_DNA

characteristic: Experimental Factor: Immunoprecipitate

text: Phenotype: Caucasian

characteristic: Experimental Factor: Phenotype

text: Sex: female

characteristic: Experimental Factor: Sex

text: UNIVERSITY OF PENNSY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Homo sapiens

text: pancreatic islet

text: Caucasian

characteristic: Phenotype

text: female

tag: Namespace:UNIVERSITY OF PENNSY

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Normal donor Protocols: Protocol after that of Tuteja et al. 2008 Nucleic Acid Research 36(12): 4149-4157. Islets (10,000 IEQs) were centrifuged (13,000Xg /30 sec) at room temperature (RT) and resuspended in 500ml 2.22% formaldehyde/PBS while rotating them for 10-min/RT. 59 ml 2.5M glycine was added to a final conc of 0.14 M to stop cross linking, followed by rotation for 5min/RT. Cells were centrifuged (13,000Xg/ 1 min) and pellet was washed with 1 ml PBS followed by centrifugation (13,000Xg) and then resuspended in 200 ml cold CHIP Whole cell lysis buffer. Cells were homogenized with small plastic pestle by hand and incubated on ice for 10 min. Cells were sonicated using Diagenode Bioruptor for 10 min on high at 30 s intervals, followed by centrifugation at 13,000Xg for 10 mins/40C. Sample was split and 10 ml of supernatant was used as input; remainder was frozen in liquid nitrogren. 2mg chromatin was added to 1mL CHIP dilution buffer and proteinase inhibitor. 2mg anti-histone antibody was then added followed by rotation at 4 C/overnight. Protein G agarose beads were washed 3 times with 1 ml of CHIP dilution buffer, resuspended in BSA, protease inhibitor and CHIP dilution buffer for and rotated at 4 C overnight. 100 ml of blocked agarose beads were added to each chromatin sample, incubate at 4 C/1 hr followed by centrifugation at 13,000Xg to aspirate the supernatant. 1 ml of wash buffer was added (TSEI, TSEII, CHIP buffer 3 in consecutive order) to agarose pellet and rotate at RT/5min. 100ml elution buffer was added to the pellet and rotated for 15 min. This step was repeated and eluates were combined. 8 ml 5M NaCl/ 200 ml eluates were added and incubate at 65 C overnight. 8 ml 1M Tris HCl (pH7.5), 0.5M EDTA and 1 ml 10mg/ml proteinase K, were added to the sample followed by incubation at 45 C /1hr for reverse cross-linking. Un-crosslinked chromatin was purified using PCR purification kit and eluted in 50 ml EB. Enrichment of CHIP samples was confirmed using qPCR using SYBR GreenER (Invitrogen) and Mx3000 PCR System (Stratagene, La Jolla, CA, USA). Enrichment of target region was calculated using control region (+60Kb of insulin gene) as a reference (lacking histone modifications) and by comparing input (sheared genomic DNA) to ChIP material.

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Age

text: normal

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: 19 years

text: Immunoprecipitate: input_DNA

text: Phenotype: African American

text: Sex: male

characteristic: External Id

text: UNIVERSITY OF PENNSY

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text: public

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characteristic: SRA accession

text: male

characteristic: Sex

text: ArrayExpress

text: human

text: Homo sapiens

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text: Age

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text: normal

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text: 28 years

characteristic: Experimental Factor: Age

text: Immunoprecipitate: H3K4me3

characteristic: Experimental Factor: Immunoprecipitate

text: Phenotype: African American

characteristic: Experimental Factor: Phenotype

text: Sex: female

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text: UNIVERSITY OF PENNSY

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text: pancreatic islet

text: African American

text: female

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens


text: Age

text: normal

characteristic: ENA-FIRST-PUBLIC

text: 32 years

text: Immunoprecipitate: H3K4me3

text: Phenotype: Asian

text: Sex: male

text: UNIVERSITY OF PENNSY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

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text: pancreatic islet

text: Asian

characteristic: Phenotype

text: male

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Age

text: normal

characteristic: ENA-LAST-UPDATE

text: 22 years

text: Immunoprecipitate: H3K4me1

text: Phenotype: African American

text: Sex: female

characteristic: External Id

text: UNIVERSITY OF PENNSY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Homo sapiens

characteristic: Organism

text: pancreatic islet

characteristic: OrganismPart

text: African American

characteristic: SRA accession

text: female

characteristic: Sex

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens


text: Age

characteristic: Age

characteristic: BioSourceProvider

text: normal

characteristic: DiseaseState

text: 28 years

characteristic: Experimental Factor: Age

text: Immunoprecipitate: input_DNA

characteristic: Experimental Factor: Immunoprecipitate

text: Phenotype: Caucasian

characteristic: Experimental Factor: Phenotype

text: Sex: female

characteristic: Experimental Factor: Sex

text: UNIVERSITY OF PENNSY

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text: Caucasian

text: female

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens


text: Age

text: normal

characteristic: ENA-FIRST-PUBLIC

text: 51 years

text: Immunoprecipitate: input_DNA

text: Phenotype: Hispanic

text: Sex: male

text: UNIVERSITY OF PENNSY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

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text: pancreatic islet

text: Hispanic

characteristic: Phenotype

text: male

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens


name: Arctocephalus gazella (Antarctic fur seal) transcriptome pooled sample

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ED

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Total RNA from 12 Arctocephalus gazella (Antarctic fur seal) individuals pooled

characteristic: Source

text: antarctic fur seal

text: Arctocephalus gazella (Antarctic fur seal) RNA samples from 12 individuals pooled into one sample, then cDNA synthesised using Evroen SMART cDNA synthesis service. The individual samples do not have barcodes. Sample id: JH84/09 (JIH1 to 12 pooled)

text: Arctocephalus gazella

text: Arctocephalus gazella


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: Sample Description

characteristic: Strain

text: PDP1619260-sc-2011-04-19T13:23:12Z-1005140

text: house mouse

text: Mus musculus

text: Mus musculus


YH

text: BGI

text: public

text: YH

characteristic: Submitter Id

text: human

text: Healthy Han Chinese individual

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: MSY PCR Enriched

text: human

text: Homo sapiens

text: Homo sapiens


text: SC

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: SC

text: public

text: Ascaris_suum_Male_03-sc-2010-05-07-33098

text: pig roundworm

text: Ascaris suum

text: Ascaris suum


E-MTAB-445:Gastric LN_92

text: 184 days

characteristic: Age

text: resistant

characteristic: ClinicalInformation

text: lamb

characteristic: DevelopmentalStage

text: ROSLIN

text: public

text: Ovis aries

characteristic: Organism

text: gastric lymph node

characteristic: OrganismPart

text: female

characteristic: Sex

text: E-MTAB-445:Gastric LN_92

text: ArrayExpress

characteristic: broker name

text: sheep

text: Protocols: Lambs were experimentally infected with approximately 2,300 infective L3 Teladorsagia circumcincta larvae three times a week starting at approximately 12 weeks of age and continuing until sacrifice at approximately 27 weeks. Gastric lymph nodes were collected from all lambs, diced and placed in RNAlater (Ambion) at 20C, incubated at 4C overnight and stored at -70C. Total RNA was isolated from tissues using the Ambion Ribopure (http://www.ambion.com/techlib/prot/fm_1924.pdf). Approximately 100 mg tissue was thawed to 20C and excess RNALater removed by blotting. 2 ml TRI Reagent was added and tissues homogenized using a rotor-stator homogenizer. Insoluble material was removed by centrifugation at 12,000 x g. 1 ml supernatant from each sample was dispensed into 1.5 ml microcentrifuge tubes with 100 ul of bromochloropropane (BCP). Tubes were vortexed and incubated at 20C for 15 min. Tubes were centrifuged at 12,000 x g for 10 min at 4C. 400 ul of the aqueous phase (top layer) was transferred to a new 1.5 ml microcentrifuge tube with 200 ul 100% ethanol, vortexed for 5 s. Each sample was transferred to a Filter Cartridge-Collection Tube assembly, centrifuged at 12,000 x g for 30 s at 20C. 500 ul of Wash Solution was added to the Filter Cartridge-Collection Tube centrifuged for 30 s at 20C and rewashed. RNA was eluted by the addition of 100 ul Elution Buffer incubated at 20C for 2 min and centrifuged for 30 s to elute the RNA from the filter. RNA quality and integrity was assessed using a RNA 6000 Nano LabChip on the Agilent 2100 Bioanalyzer and quantified using a NanoDrop ND-1000 spectrophotometer.

text: Ovis aries

text: Ovis aries

text: Gastric LN_92

characteristic: title


E-MTAB-445:Gastric LN_20

text: 190 days

text: resistant

text: lamb

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROSLIN

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ovis aries

text: gastric lymph node

characteristic: SRA accession

text: female

text: E-MTAB-445:Gastric LN_20

text: ArrayExpress

text: sheep

characteristic: common name

text: Protocols: Lambs were experimentally infected with approximately 2,300 infective L3 Teladorsagia circumcincta larvae three times a week starting at approximately 12 weeks of age and continuing until sacrifice at approximately 27 weeks. Gastric lymph nodes were collected from all lambs, diced and placed in RNAlater (Ambion) at 20C, incubated at 4C overnight and stored at -70C. Total RNA was isolated from tissues using the Qiagen RNeasy Mini kit (www.qiagen.com/literature/render.aspx?id=353). Approximately 30 mg tissue was thawed to 20C and excess RNALater removed by blotting. 600ul Buffer RTL (including 6?l ?-mercaptoethanol) was added and tissues homogenized using a rotor-stator homogenizer. Insoluble material was removed by 3 min centrifugation at 12,000 x g. 600ul of 70% ethanol was added to the cleared supernatant, mixed and immediately applied to an RNAeasy mini column, which was centrifuged at 8,000 x g for 15 s. The columns were washed by the addition of 700 ul Buffer RW1 and centrifugation at 8,000 x g for 15 s. RNeasy column was transferred into a new 2 ml collection tube, 500 ul Buffer RPE was added and centrifuged at 8,000 x g for 15 s, which was repeated. RNA was eluted by the addition of 50 ul RNase-free water directly onto the RNeasy silica-gel membrane and centrifugation 8,000 x g for 1 min. RNA quality and integrity was assessed using a RNA 6000 Nano LabChip on the Agilent 2100 Bioanalyzer and quantified using a NanoDrop ND-1000 spectrophotometer.

characteristic: description

text: Ovis aries

characteristic: organism

text: Ovis aries

text: Gastric LN_20


E-MTAB-445:Gastric LN_58

text: 188 days

text: resistant

text: lamb

characteristic: ENA-FIRST-PUBLIC

text: ROSLIN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ovis aries

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_58

characteristic: Submitter Id

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_58


E-MTAB-445:Gastric LN_114

text: 193 days

characteristic: Age

text: susceptible

characteristic: ClinicalInformation

text: lamb

characteristic: DevelopmentalStage

text: ROSLIN

text: public

text: Ovis aries

characteristic: Organism

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_114

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_114


E-MTAB-445:Gastric LN_124

text: 193 days

text: not applicable

text: lamb

text: ROSLIN

text: public

text: Ovis aries

text: gastric lymph node

characteristic: OrganismPart

text: female

characteristic: Sex

text: E-MTAB-445:Gastric LN_124

text: ArrayExpress

characteristic: broker name

text: sheep

text: Protocols: Uninfected control lambs, were sham dosed with water at the same time as three times a week starting at approximately 12 weeks of age and continuing until sacrifice at approximately 27 weeks. Gastric lymph nodes were collected from all lambs, diced and placed in RNAlater (Ambion) at 20C, incubated at 4C overnight and stored at -70C. Total RNA was isolated from tissues using the Ambion Ribopure (http://www.ambion.com/techlib/prot/fm_1924.pdf). Approximately 100 mg tissue was thawed to 20C and excess RNALater removed by blotting. 2 ml TRI Reagent was added and tissues homogenized using a rotor-stator homogenizer. Insoluble material was removed by centrifugation at 12,000 x g. 1 ml supernatant from each sample was dispensed into 1.5 ml microcentrifuge tubes with 100 ul of bromochloropropane (BCP). Tubes were vortexed and incubated at 20C for 15 min. Tubes were centrifuged at 12,000 x g for 10 min at 4C. 400 ul of the aqueous phase (top layer) was transferred to a new 1.5 ml microcentrifuge tube with 200 ul 100% ethanol, vortexed for 5 s. Each sample was transferred to a Filter Cartridge-Collection Tube assembly, centrifuged at 12,000 x g for 30 s at 20C. 500 ul of Wash Solution was added to the Filter Cartridge-Collection Tube centrifuged for 30 s at 20C and rewashed. RNA was eluted by the addition of 100 ul Elution Buffer incubated at 20C for 2 min and centrifuged for 30 s to elute the RNA from the filter. RNA quality and integrity was assessed using a RNA 6000 Nano LabChip on the Agilent 2100 Bioanalyzer and quantified using a NanoDrop ND-1000 spectrophotometer.

text: Ovis aries

text: Ovis aries

text: Gastric LN_124

characteristic: title


E-MTAB-445:Gastric LN_47

text: 190 days

text: not applicable

text: lamb

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROSLIN

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ovis aries

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_47

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_47


E-MTAB-445:Gastric LN_109

text: 197 days

text: susceptible

text: lamb

text: ROSLIN

text: public

text: Ovis aries

text: gastric lymph node

characteristic: SRA accession

text: female

text: E-MTAB-445:Gastric LN_109

text: ArrayExpress

text: sheep

characteristic: common name

characteristic: description

text: Ovis aries

characteristic: organism

text: Ovis aries

text: Gastric LN_109


E-MTAB-445:Gastric LN_21

text: 195 days

text: resistant

text: lamb

characteristic: ENA-FIRST-PUBLIC

text: ROSLIN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ovis aries

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_21

characteristic: Submitter Id

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_21


E-MTAB-445:Gastric LN_130

text: 190 days

characteristic: Age

text: not applicable

characteristic: ClinicalInformation

text: lamb

characteristic: DevelopmentalStage

text: ROSLIN

text: public

text: Ovis aries

characteristic: Organism

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_130

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_130


E-MTAB-445:Gastric LN_173

text: 187 days

text: susceptible

text: lamb

text: ROSLIN

text: public

text: Ovis aries

text: gastric lymph node

characteristic: OrganismPart

text: female

characteristic: Sex

text: E-MTAB-445:Gastric LN_173

text: ArrayExpress

characteristic: broker name

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_173

characteristic: title


E-MTAB-445:Gastric LN_183

text: 181 days

text: susceptible

text: lamb

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROSLIN

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ovis aries

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_183

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_183


E-MTAB-445:Gastric LN_50

text: 189 days

text: resistant

text: lamb

text: ROSLIN

text: public

text: Ovis aries

text: gastric lymph node

characteristic: SRA accession

text: female

text: E-MTAB-445:Gastric LN_50

text: ArrayExpress

text: sheep

characteristic: common name

characteristic: description

text: Ovis aries

characteristic: organism

text: Ovis aries

text: Gastric LN_50


E-MTAB-445:Gastric LN_146

text: 185 days

text: not applicable

text: lamb

characteristic: ENA-FIRST-PUBLIC

text: ROSLIN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ovis aries

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_146

characteristic: Submitter Id

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_146


E-MTAB-445:Gastric LN_38

text: 192 days

characteristic: Age

text: susceptible

characteristic: ClinicalInformation

text: lamb

characteristic: DevelopmentalStage

text: ROSLIN

text: public

text: Ovis aries

characteristic: Organism

text: gastric lymph node

text: female

text: E-MTAB-445:Gastric LN_38

text: ArrayExpress

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_38


E-MTAB-445:Gastric LN_57

text: 185 days

text: not applicable

text: lamb

text: ROSLIN

text: public

text: Ovis aries

text: gastric lymph node

characteristic: OrganismPart

text: female

characteristic: Sex

text: E-MTAB-445:Gastric LN_57

text: ArrayExpress

characteristic: broker name

text: sheep

text: Ovis aries

text: Ovis aries

text: Gastric LN_57

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae