text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-16 12:12

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: juv

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: no

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: 2016-06-16 11:35

text: vole feces microbiome

characteristic: description

text: TRUE

text: Ukraine

text: Bank vole

text: Myodes glareolus

text: female

text: ad

text: no

text: feces metagenome

characteristic: organism

text: NA (prev. University of Oulu, Department of Ecology and Genetics)

text: FALSE

text: stool

text: feces metagenome

characteristic: title

text: KL


text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-15 13:47

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: juv

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: no

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: 2016-06-16 11:39

text: vole feces microbiome

characteristic: description

text: TRUE

text: Ukraine

text: Bank vole

text: Myodes glareolus

text: female

text: ad

text: no

text: feces metagenome

characteristic: organism

text: FALSE

text: stool

text: feces metagenome

characteristic: title

text: KL


text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-16 11:39

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: female

characteristic: host sex

text: ad

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: yes

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: 2016-06-16 11:35

text: vole feces microbiome

characteristic: description

text: TRUE

text: Ukraine

text: Bank vole

text: Myodes glareolus

text: male

text: ad

text: no

text: feces metagenome

characteristic: organism

text: FALSE

text: stool

text: feces metagenome

characteristic: title

text: KL


text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-16 11:53

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: juv

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: no

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: 2016-06-16 12:02

text: vole feces microbiome

characteristic: description

text: TRUE

text: Ukraine

text: Bank vole

text: Myodes glareolus

text: female

text: ad

text: no

text: feces metagenome

characteristic: organism

text: FALSE

text: stool

text: feces metagenome

characteristic: title

text: KL


text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-16 11:58

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: female

characteristic: host sex

text: ad

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: no

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: 2016-06-16 11:45

text: vole feces microbiome

characteristic: description

text: TRUE

text: Ukraine

text: Bank vole

text: Myodes glareolus

text: male

text: juv

text: no

text: feces metagenome

characteristic: organism

text: FALSE

text: stool

text: feces metagenome

characteristic: title

text: KL


text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-16 11:58

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: female

characteristic: host sex

text: ad

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: yes

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: 2016-06-16 11:53

text: vole feces microbiome

characteristic: description

text: TRUE

text: Ukraine

text: Bank vole

text: Myodes glareolus

text: male

text: ad

text: no

text: feces metagenome

characteristic: organism

text: FALSE

text: stool

text: feces metagenome

characteristic: title

text: KL


text: UCSDMI

text: public

text: years

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: 2016-06-15 14:01

text: vole feces microbiome

text: TRUE

text: Ukraine

characteristic: geo loc name

text: Bank vole

characteristic: host common name

characteristic: host length mm

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: juv

characteristic: host state

characteristic: host subject id

characteristic: host taxid

characteristic: host tot mass g

text: no

characteristic: latitude

characteristic: longitude

text: feces metagenome

text: FALSE

characteristic: replicate

text: stool

characteristic: sample type

text: feces metagenome

text: KL

characteristic: treatment


text: human metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human metagenome

characteristic: common name

text: human metagenome

characteristic: organism

text: human metagenome

characteristic: subject id

characteristic: title


text: ROSLIN

text: public

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: m8A is a 129/Ola parental mouse embryonic stem cell line derived in 2iL on MEFs.

characteristic: description

text: undifferentiated

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: mouse ESC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROSLIN

text: public

text: embryonic stem cell

text: house mouse

text: m8C is a 129/Ola parental mouse embryonic stem cell line derived in 2iL on MEFs.

text: undifferentiated

text: Mus musculus

text: Mus musculus

text: male

text: mouse ESC


text: ROSLIN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: embryonic stem cell

text: Norway rat

text: DAK31 is a DarkAgouti parental rat embryonic stem cell line derived in 2iL on MEFs.

text: undifferentiated

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: Dark Agouti

text: rat ESC


text: ROSLIN

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: embryonic stem cell

text: Norway rat

characteristic: common name

text: DAK38 is a DarkAgouti parental rat embryonic stem cell line derived in 2iL on MEFs.

text: undifferentiated

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: male

text: Dark Agouti

text: rat ESC


text: ROSLIN

text: public

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: Ctrl

characteristic: clone

text: Norway rat

text: MT3 is a transgenic rat embryonic stem cell subclone carrying a randomly integrated pCAGGS-IRES-Puro empty vector. The sublone is derived from clone E3. Clone E3 was generated by targeted integration of a Rex1-EGFP reporter into parental line DAK31.

text: undifferentiated

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: Dark Agouti

text: rat ESC control clone

characteristic: title


text: ROSLIN

text: public

text: embryonic stem cell

text: Ctrl

text: Norway rat

text: MT8 is a transgenic rat embryonic stem cell subclone carrying a randomly integrated pCAGGS-IRES-Puro empty vector. The sublone is derived from clone E3. Clone E3 was generated by targeted integration of a Rex1-EGFP reporter into parental line DAK31.

characteristic: description

text: undifferentiated

characteristic: dev stage

text: Rattus norvegicus

text: Rattus norvegicus

text: male

characteristic: sex

text: Dark Agouti

characteristic: strain

text: rat ESC control clone


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROSLIN

text: public

text: embryonic stem cell

text: Nanog

text: Norway rat

text: rN3 is a transgenic rat embryonic stem cell subclone carrying a randomly integrated pCAGGS-IRES-Puro vector expressing rat Nanog. The sublone is derived from clone E3. Clone E3 was generated by targeted integration of a Rex1-EGFP reporter into parental line DAK31.

text: undifferentiated

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: Dark Agouti

text: rat ESC Nanog OE clone


text: ROSLIN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: embryonic stem cell

text: Nanog

text: Norway rat

text: rN6 is a transgenic rat embryonic stem cell subclone carrying a randomly integrated pCAGGS-IRES-Puro vector expressing rat Nanog. The sublone is derived from clone E3. Clone E3 was generated by targeted integration of a Rex1-EGFP reporter into parental line DAK31.

text: undifferentiated

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: Dark Agouti

text: rat ESC Nanog OE clone


text: Swedish Museum of Natural History

text: public

characteristic: SRA accession

tag: Namespace:Swedish Museum of Natural History

characteristic: Submitter Id

text: woolly mammoth

characteristic: common name

text: Mammuthus primigenius

characteristic: organism

text: Mammuthus primigenius

text: A woolly mammoth sample


text: SV-IBI-EPFL

text: public

text: ArrayExpress

characteristic: broker name

text: immortalised brown preadipocyte

characteristic: cell line

text: induced brown preadipocyte

characteristic: cell type

text: house mouse

text: Protocols: Murine derived brown pre-adipocytes (IBA) were cultured in high-glucose Dulbecco’s modified Eagle’s medium (DMEM, Life Technologies) supplemented with 10% fetal calf serum (FCS, AMIMED), with 100x penicillin/streptomycin/glutamine (100x Pen/Strep/Glutamine, Life Technologies) in a 5% CO2 humidified atmosphere at 37C and maintained at less than 80% confluence before passaging Differentiation of IBAs was induced by exposing confluent cells (Day 0) to DMEM containing 10% FCS supplemented with 0.5 mM 3-isobutyl-1-methylxanthine, 1 uM dexamethasone, 1.96 nM insulin (Sigma, stock solution of 167uM prepared in PBS), 125 uM indomethacin (Sigma, stock solution of 18mM prepared in absolute ethanol), 1nM T3 (3,3’,5-Triiodo-L-thyronine sodium salt, Sigma, prepared in 45mM KOH). After exactly 28 hours, the induction medium was replaced with adipocyte differentiation medium consisting of 1nM T3 and 1.96 nM insulin Murine brown pre-adipocytes were collected at Day 0, 2 hours, Day 1, Day 2 and Day 4. The cells were fixed as described previously (Raghav and Deplancke, 2012) and stored at -80C. Ten million cells were used for each IP. The ChIP experiment was performed as using magnetic beads protocol (Dynabeads) (H3K27ac and NFI). Multiplexed libraries were prepared using barcoded adapters for each sample following the protocol described in (Raghav and Deplancke, 2012) with slight modifications. In brief, ChIP-DNA fragments (5-10ng) were end-repaired using an End-IT DNA end repair kit (Epicentre Technologies) followed by addition of an A-base and ligation of bar-coded adapters. After ligation incubation, DNA was cleaned up using AMPure XP beads (Agencourt). Two biological replicates for five time points (Day 0, 2h, Day 1, Day 2 and Day 4) were prepared for probing H3K27ac levels during differentiation, while one biological replicate at Day 0 and Day 4 was prepared for NFI.

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

characteristic: progenitor cell type

text: Mus musculus

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

text: SV-IBI-EPFL

text: public

text: ArrayExpress

text: immortalised brown preadipocyte

text: brown preadipocyte

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SV-IBI-EPFL

text: public

text: ArrayExpress

text: immortalised brown preadipocyte

text: maturing brown adipocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

text: Mus musculus


characteristic: External Id

text: SV-IBI-EPFL

characteristic: INSDC center name

text: public

text: ArrayExpress

text: immortalised brown preadipocyte

text: mature brown adipocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: brown preadipocyte

text: Mus musculus


text: Peking University First Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Peking University First Hospital

unit: month

characteristic: age

text: ArrayExpress

text: human

text: Protocols: Peripheral venous blood was collected from both patients and their families. Buffy coats of nucleated cells obtained from anticoagulated blood (ACD or EDTA) were resuspended in 15 ml polypropylene centrifugation tubes with 3 ml of nuclei lysis buffer (10 mM Tris-HCl, 400 mM NaCl and 2 mM Na2EDTA, pH 8.2). The cell lysates were digested overnight at 37°C with 0.2 ml of 10% SDS and 0.5 ml of a protease K solution (1 mg protease K in 1% SDS and 2 mM Na2EDTA). After digestion was complete, 1 ml of saturated NaCl (approximately 6M) was added to each tube and shaken vigorously for 15 seconds, followed by centrifugation at 2500 rpm for 15 minutes. The precipitated protein pellet was left at the bottom of the tube and the supernatant containing the DNA was transferred to another 15 ml polypropylene tube. Exactly 2 volumes of room temperature absolute ethanol was added and the tubes inverted several times until the DNA precipitated. The precipitated DNA strands were removed with a plastic spatula or pipette and transferred to a 1.5 ml microcentrifuge tube containing 100-200 pl TE buffer (10 mM Tris-HCl, 0.2 mM Na2EDTA, pH 7.5). The DNA was allowed to dissolve 2 hours at 37°C before quantitating. AmpliSeqTM ibrary was prepared following the modifiedIon AmpliSeqTM Library Preparation protocol (Pub No. MAN0006735).

text: Hypomyelinating leukodystrophy

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


text: Peking University First Hospital

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Hypomyelinating leukodystrophy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

characteristic: collection date

text: bacteria isolated on plate

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: hospital

characteristic: isolation source

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

characteristic: sequence type

characteristic: strain

text: Linezolid resistant S. epidermidis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: bacteria isolated on plate

text: France

text: healthy

text: Homo sapiens

text: hospital

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

text: Linezolid resistant S. epidermidis


characteristic: ENA-CHECKLIST

text: INRA MONTPELLIER,FRANCE

text: public

characteristic: SRA accession

tag: Namespace:INRA MONTPELLIER,FRANCE

characteristic: Submitter Id

text: Medicago truncatula var. truncatula

characteristic: organism

text: Medicago truncatula var. truncatula

text: Eleven inbred lines from three distant Mediterranean populations and pool of 3 or 8 accessions


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: UNIVERSITY OF VIENNA

text: public

tag: Namespace:UNIVERSITY OF VIENNA

text: wild type

characteristic: description

text: Pseudomonas aeruginosa PA14

text: Pseudomonas aeruginosa PA14

text: Pseudomonas aeruginosa PA14 anaerobic growth


text: UNIVERSITY OF VIENNA

text: public

text: ΔpaiI

text: Pseudomonas aeruginosa PA14

text: Pseudomonas aeruginosa PA14


text: UNIVERSITE DE LIMOGES

text: public

tag: Namespace:UNIVERSITE DE LIMOGES

text: house mouse

text: Mus musculus

text: Mus musculus

text: DeMiner sample dataset


UNG-GC

text: UNIVERSITE DE LIMOGES

text: public

text: UNG-GC

text: house mouse

text: Mus musculus

text: Mus musculus

text: DeMiner sample dataset


WT-GC

text: UNIVERSITE DE LIMOGES

text: public

text: WT-GC

text: house mouse

text: Mus musculus

text: Mus musculus

text: DeMiner sample dataset


WT-naive

text: UNIVERSITE DE LIMOGES

text: public

text: WT-naive

text: house mouse

text: Mus musculus

text: Mus musculus

text: DeMiner sample dataset


WT-tail

text: UNIVERSITE DE LIMOGES

text: public

text: WT-tail

text: house mouse

text: Mus musculus

text: Mus musculus

text: DeMiner sample dataset


text: gut metagenome

text: SC

text: public

text: gut metagenome

text: gut metagenome

text: gut metagenome


SI

text: public

text: SI

tag: Namespace:CENTER FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: human

text: Homo sapiens

text: Homo sapiens

text: Sunghir 1


SII

text: CENTER FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: public

text: SII

text: human

text: Homo sapiens

text: Homo sapiens

text: Sunghir 2


SIII

text: public

text: SIII

text: human

text: Homo sapiens

text: Homo sapiens

text: Sunghir 3


SIV

text: public

text: SIV

text: human

text: Homo sapiens

text: Homo sapiens

text: Sunghir 4


SVI

text: public

text: SVI

text: human

text: Homo sapiens

text: Homo sapiens

text: Sunghir 6


text: King Fahd Medical Research Centre

text: public

tag: Namespace:King Fahd Medical Research Centre

text: food fermentation metagenome

text: food fermentation metagenome

text: LBA


text: QLD Health

text: public

tag: Namespace:QLD Health

characteristic: collection date

text: Australia

characteristic: geographic location

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: environmental

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica

text: S. Enteritidis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: QLD Health

characteristic: INSDC center name

text: public

text: Australia

text: environmental

text: Salmonella enterica

text: Salmonella enterica

text: S. Enteritidis

characteristic: title


characteristic: ENA-CHECKLIST

text: QLD Health

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Australia

text: diseased

characteristic: host health state

text: homo sapiens

text: faeces

text: Salmonella enterica

text: Salmonella enterica

text: S. Enteritidis


text: QLD Health

text: public

characteristic: Submitter Id

text: Australia

text: diseased

text: homo sapiens

text: blood

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: S. Enteritidis


text: QLD Health

text: public

text: Salmonella enterica

text: Salmonella enterica

text: S. Enteritidis


text: Saolta

text: public

text: IRL

characteristic: collection date

text: Klebsiella

characteristic: genus

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: amoxicillin-clavulanic acid

value: EUCAST

value: broth dilution

value: Vitek

value: resistant

value: Klebsiella pneumoniae

value: cefotaxime

value: cefoxitin

value: piperacillin-tazobactam

value: cefpodoxime-clavulanic acid

value: tobramycin

value: susceptible

value: amikacin

value: cefpodoxime

value: meropenem

value: intermediate

value: tigecycline

value: ampicillin

value: gentamicin


characteristic: ENA-FIRST-PUBLIC

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: broth dilution

value: amoxicillin-clavulanic acid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Saolta

characteristic: INSDC center name

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: Vitek

value: resistant

value: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

text: Saolta

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: cefoxitin

value: cefotaxime

value: piperacillin-tazobactam


text: Saolta

text: public

text: IRL

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: susceptible

value: cefpodoxime-clavulanic acid

value: tobramycin


text: Saolta

text: public

text: IRL

characteristic: collection date

text: Klebsiella

characteristic: genus

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Homo sapiens

text: Human

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: cefpodoxime

value: meropenem

value: amikacin


characteristic: ENA-FIRST-PUBLIC

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

characteristic: host

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: ampicillin

value: tigecycline

value: intermediate


characteristic: ENA-LAST-UPDATE

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

characteristic: isolate

text: Human

characteristic: isolation source

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: broth dilution

value: gentamicin


characteristic: External Id

text: Saolta

characteristic: INSDC center name

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: Vitek

value: resistant

value: amoxicillin-clavulanic acid


characteristic: ENA-CHECKLIST

text: Saolta

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IRL

text: Escherichia

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

value: Escherichia coli

value: cefoxitin

value: cefotaxime


text: Saolta

text: public

characteristic: INSDC status

text: IRL

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: susceptible

value: Klebsiella pneumoniae

value: cefpodoxime-clavulanic acid

value: piperacillin-tazobactam


text: Saolta

text: public

text: IRL

characteristic: collection date

text: Klebsiella

characteristic: genus

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

value: meropenem

value: tobramycin

value: amikacin

value: cefpodoxime


characteristic: ENA-FIRST-PUBLIC

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Homo sapiens

text: Human

text: respiratory tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: EUCAST

value: ampicillin

value: tigecycline


characteristic: ENA-LAST-UPDATE

text: Saolta

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: broth dilution

value: Vitek

value: intermediate

value: ertapenem

value: gentamicin


characteristic: External Id

text: Saolta

characteristic: INSDC center name

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

characteristic: isolation source

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: resistant

value: cefotaxime

value: amoxicillin-clavulanic acid

value: cefoxitin


characteristic: ENA-CHECKLIST

text: Saolta

characteristic: INSDC first public

text: public

text: IRL

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title

value: Klebsiella pneumoniae

value: susceptible

value: piperacillin-tazobactam

value: cefpodoxime-clavulanic acid


text: Saolta

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IRL

characteristic: SRA accession

text: Klebsiella

text: Ireland

text: Homo sapiens

text: Homo sapiens

text: Human

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: amikacin

value: cefpodoxime

value: meropenem

value: tobramycin


text: public

characteristic: Submitter Id

characteristic: collection date

text: Germany

characteristic: country

text: Citrobacter freundii

text: Citrobacter freundii

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: public

text: Germany

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: INSTITUT PASTEUR

text: public

text: Genomic sequence of bacteriophage LF82_rP10, with mutation in gp91 gene (H284Y), obtained after 4 replication cycles on MG1655

characteristic: description

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

text: Reactor 4.19, mean hydraulic retention time (HRT) of 5.5 d, start of experiment, sampled on 11th October 2016

text: biogas reactor (CSTR, VFA fed)

characteristic: environment (biome)

text: anoxic, mesophilic

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: NucleoSpin® Soil Kit (MACHEREY-NAGEL)

characteristic: nucleic acid extraction

text: unidentified

text: 341f: CCTACGGGNGGCWGCAG, 785r: GACTACHVGGGTATCTAAKCC

characteristic: pcr primers

text: HRT-project

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

text: unidentified

text: MiSeq V3 (2x300 bp)

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Reactor 4.19, HRT of 5.5 d, start of experiment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Reactor 4.20, mean hydraulic retention time (HRT) of 14 d, start of experiment, sampled on 11th October 2016

text: biogas reactor (CSTR, VFA fed)

text: anoxic, mesophilic

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: NucleoSpin® Soil Kit (MACHEREY-NAGEL)

text: unidentified

characteristic: organism

text: HRT-project

text: anaerobe

text: unidentified

text: MiSeq V3 (2x300 bp)

text: 16S rRNA gene

text: Reactor 4.20, HRT of 14 d, start of experiment

characteristic: title


characteristic: External Id

text: public

text: Reactor 4.19, mean hydraulic retention time (HRT) of 5.5 d, end of experiment, sampled on 20th December 2016

characteristic: description

text: biogas reactor (CSTR, VFA fed)

characteristic: environment (biome)

text: anoxic, mesophilic

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: NucleoSpin® Soil Kit (MACHEREY-NAGEL)

characteristic: nucleic acid extraction

text: unidentified

characteristic: pcr primers

text: HRT-project

text: anaerobe

text: unidentified

text: MiSeq V3 (2x300 bp)

text: 16S rRNA gene

text: Reactor 4.19, HRT of 5.5 d, end of experiment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Reactor 4.20, mean hydraulic retention time (HRT) of 14 d, end of experiment, sampled on 20th December 2016

text: biogas reactor (CSTR, VFA fed)

text: anoxic, mesophilic

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: NucleoSpin® Soil Kit (MACHEREY-NAGEL)

text: unidentified

text: HRT-project

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

text: unidentified

text: MiSeq V3 (2x300 bp)

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Reactor 4.20, HRT of 14 d, end of experiment


characteristic: Catalogue ID

characteristic: External Id

text: TGAC

text: public

text: 59ad5926286c69004295980e:sample:SAM20465

characteristic: Submitter Id

text: TGAC

characteristic: broker name

text: human

characteristic: common name

text: Stratagene

characteristic: company

text: embryonal testis carcinoma

characteristic: derived from cell line

text: lymphoblastic leukemia T lymphoblast

text: brain glioblastoma

text: histiocytic lymphoma cell

text: plasmacytoma

text: Liposarcoma

text: Melanoma

text: breast adenocarcinoma

text: cervical adenocarcinoma

text: Hepatoblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Universal Human Reference RNA

characteristic: source name

characteristic: title


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: subject id


text: male

characteristic: ArrayExpress-SEX

text: Oryzias latipes

text: Inbred

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Japanese medaka

text: Male

characteristic: gender

text: Oryzias latipes

text: Oryzias latipes


text: public

tag: Namespace:European Bioinformatics Institute (EMBL-EBI)

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: Fly guts were micro-dissected in ice-cold RNAlater (Qiagen) solution from 10 day old female flies and RNA was extracted using the QIAGEN total RNA isolation kit and quantified on an Agilent 2100 bioanalyser. Sample concentration and purity of RNA was measured on a NanoDrop spectrophotometer, and RNA integrity was assessed on an Agilent 2100 Bioanalyzer. daGS;>InRDN & RNAi protocol: The following stocks were used: UAS-InRDN (K1409A, containing a dominant negative form of insulin receptor leading to reduction of insulin signaling activity) and UAS-GFP-RNAi stocks were obtained from the Bloomington Stock Centre. UAS-fkh-RNAi line was obtained from Vienna stock center (stock number 37062). Transgenes were expressed under the control of the ubiquitous daGS driver (kindly provided by Veronique Monnier). To drive transgene expressions, RU486 (Sigma) dissolved in ethanol was added to a final concentration of 200 μM to fly food containing 10% (w/v) brewer’s yeast, 5% (w/v) sucrose, and 1.5% (w/v) agar. RNA was extracted using the QIAGEN total RNA isolation kit and quantified on an Agilent 2100 bioanalyser. Sample concentration and purity of RNA was measured on a NanoDrop spectrophotometer, and RNA integrity was assessed on an Agilent 2100 Bioanalyzer. Samples were processed using Illumina’s TruSeq Stranded mRNA LT sample preparation kit (p/n RS-122-2101) according to manufacturer’s instructions. Deviations from the protocol were as follows:250ng total RNA was used as starting material. Fragmentation was carried out for 10mins instead of 8mins, and 14 cycles of PCR were used.mRNA was isolated from total RNA using Oligo dT beads to pull down Poly-Adenylated transcripts. The purified mRNA was fragmented using chemical fragmentation (heat and divalent metal cation) and primed with random hexamers. Strand-specific first strand cDNA was generated using Reverse Transcriptase and Actinomycin D. The second cDNA strand was synthesised using dUTP in place of dTTP, to mark the second strand. Full length TruSeq adaptors, containing a T overhang were ligated to the A-Tailed cDNA. Successfully ligated fragments were enriched with 14 cycles of PCR.

characteristic: description

text: daGS;InRDN>GFP-RNAi

characteristic: genotype

text: Drosophila melanogaster

text: Drosophila melanogaster

text: intestine

characteristic: organism part

text: reduced insulin signaling activity

characteristic: phenotype

text: Drosophila melanogaster

text: female

characteristic: sex

text: wDahomey

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: European Bioinformatics Institute (EMBL-EBI)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fruit fly

text: daGS;InRDN>GFP-RNAi

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: intestine

text: reduced insulin signaling activity

text: Drosophila melanogaster

text: female

text: wDahomey

characteristic: title


characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: fruit fly

characteristic: compound

unit: micromolar

characteristic: dose

text: daGS;>FKH-RNAi

text: Drosophila melanogaster

text: Drosophila melanogaster

text: intestine

text: wild type phenotype

text: FKH shRNA

characteristic: rna interference

text: Drosophila melanogaster

text: female

text: wDahomey


text: public

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

characteristic: description

text: daGS;InRDN>GFP-RNAi

characteristic: genotype

text: Drosophila melanogaster

text: Drosophila melanogaster

text: intestine

characteristic: organism part

text: reduced insulin signaling activity

characteristic: phenotype

text: GFP shRNA

text: Drosophila melanogaster

text: female

characteristic: sex

text: wDahomey

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fruit fly

text: daGS;InRDN>FKH-RNAi

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: intestine

text: reduced insulin signaling activity

text: FKH shRNA

text: Drosophila melanogaster

text: female

text: wDahomey

characteristic: title


text: skin

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: skin

text: Mus musculus

characteristic: subject id


text: skin

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

characteristic: common name

text: Female

text: Mus musculus

text: skin

characteristic: phenotype

text: Mus musculus


text: liver

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: liver

text: Mus musculus


text: liver

text: female

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Female

text: Mus musculus

characteristic: organism

text: liver

text: Mus musculus


1 ss 25 f

text: Centre for Ecology and conservation

text: public

text: 1 ss 25 f

tag: Namespace:Centre for Ecology and conservation

characteristic: collection date

text: sexual selection 25 female rep 1

characteristic: description

text: Female

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

unit: ºC

characteristic: temperature

text: 1 ss 25 f

characteristic: title


2 ss 25 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2 ss 25 m

characteristic: Submitter Id

text: sexual selection 25 male rep 1

text: Male

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 2 ss 25 m


3 nss 25 f

text: Centre for Ecology and conservation

characteristic: INSDC last update

text: public

text: 3 nss 25 f

characteristic: collection date

text: no sexual selection 25 female rep 1

characteristic: description

text: Female

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 3 nss 25 f


4 nss 25 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 4 nss 25 m

text: no sexual selection 25 male rep 1

text: Male

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: no sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 4 nss 25 m

characteristic: title


5 ss 27 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5 ss 27 f

characteristic: Submitter Id

characteristic: collection date

text: sexual selection 27 female rep 1

text: Female

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 5 ss 27 f


6 ss 27 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 6 ss 27 m

text: sexual selection 27 male rep 1

characteristic: description

text: Male

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 6 ss 27 m


7 nss 27 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 7 nss 27 f

text: no sexual selection 27 female rep 1

text: Female

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: no sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 7 nss 27 f

characteristic: title


8 nss 27 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8 nss 27 m

characteristic: Submitter Id

characteristic: collection date

text: no sexual selection 27 male rep 1

text: Male

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 8 nss 27 m


9 ss 25 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 9 ss 25 f

text: sexual selection 25 female rep 2

characteristic: description

text: Female

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 9 ss 25 f


10 ss 25 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 10 ss 25 m

text: sexual selection 25 male rep 2

text: Male

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 10 ss 25 m

characteristic: title


11 nss 25 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 11 nss 25 f

characteristic: Submitter Id

characteristic: collection date

text: no sexual selection 25 female rep 2

text: Female

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 11 nss 25 f


12 nss 25 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 12 nss 25 m

text: no sexual selection 25 male rep 2

characteristic: description

text: Male

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 12 nss 25 m


13 ss 27 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 13 ss 27 f

text: sexual selection 27 female rep 2

text: Female

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 13 ss 27 f

characteristic: title


14 ss 27 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 14 ss 27 m

characteristic: Submitter Id

characteristic: collection date

text: sexual selection 27 male rep 2

text: Male

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 14 ss 27 m


15 nss 27 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 15 nss 27 f

text: no sexual selection 27 female rep 2

characteristic: description

text: Female

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 15 nss 27 f


16 nss 27 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 16 nss 27 m

text: no sexual selection 27 male rep 2

text: Male

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: no sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 16 nss 27 m

characteristic: title


17 ss 25 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 17 ss 25 f

characteristic: Submitter Id

characteristic: collection date

text: sexual selection 25 female rep 3

text: Female

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 17 ss 25 f


18 ss 25 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 18 ss 25 m

text: sexual selection 25 male rep 3

characteristic: description

text: Male

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 18 ss 25 m


19 nss 25 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 19 nss 25 f

text: no sexual selection 25 female rep 3

text: Female

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: no sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 19 nss 25 f

characteristic: title


20 nss 25 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 20 nss 25 m

characteristic: Submitter Id

characteristic: collection date

text: no sexual selection 25 male rep 3

text: Male

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 20 nss 25 m


21 ss 27 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 21 ss 27 f

text: sexual selection 27 female rep 3

characteristic: description

text: Female

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 21 ss 27 f


22 ss 27 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 22 ss 27 m

text: sexual selection 27 male rep 3

text: Male

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 22 ss 27 m

characteristic: title


23 nss 27 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 23 nss 27 f

characteristic: Submitter Id

characteristic: collection date

text: no sexual selection 27 female rep 3

text: Female

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 23 nss 27 f


24 nss 27 m

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 24 nss 27 m

text: no sexual selection 27 male rep 3

characteristic: description

text: Male

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 24 nss 27 m


25 ss 25 f

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 25 ss 25 f

text: sexual selection 25 female rep 4

text: Female

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 25 ss 25 f

characteristic: title


26 nss 25 f

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 26 nss 25 f

characteristic: Submitter Id

characteristic: collection date

text: no sexual selection 25 female rep 4

text: Female

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 26 nss 25 f


27 nss 25 m

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 27 nss 25 m

text: no sexual selection 25 male rep 4

characteristic: description

text: Male

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 27 nss 25 m


28 ss 27 f

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 28 ss 27 f

text: sexual selection 27 female rep 4

text: Female

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 28 ss 27 f

characteristic: title


29 ss 27 m

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 29 ss 27 m

characteristic: Submitter Id

characteristic: collection date

text: sexual selection 27 male rep 4

text: Male

text: gut

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: sexual selection

text: hiseq 2500

text: 29 ss 27 m


30 nss 27 f

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

text: public

text: 30 nss 27 f

text: no sexual selection 27 female rep 4

characteristic: description

text: Female

characteristic: environment (biome)

text: gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: no sexual selection

text: hiseq 2500

text: 30 nss 27 f


31 nss 27 m

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 31 nss 27 m

text: no sexual selection 27 male rep 4

text: Male

text: gut

text: United Kingdom

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

characteristic: project name

text: Drosophila simulans

text: no sexual selection

characteristic: selection regime

text: hiseq 2500

characteristic: sequencing method

characteristic: temperature

text: 31 nss 27 m

characteristic: title


32 negative control

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Ecology and conservation

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 32 negative control

characteristic: Submitter Id

characteristic: collection date

text: negative control

text: United Kingdom

text: host-associated

text: mimarks-survey

text: Drosophila simulans

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: hiseq 2500

text: 32 negative control


33 control

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology and conservation

text: public

text: 33 control

text: control community

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Drosophila simulans

characteristic: organism

text: sam 16s ss/nss H/L Temp

text: Drosophila simulans

text: hiseq 2500

text: 33 control


text: public

tag: Namespace:1-Division of Pediatric General and Thoracic Surgery, Cincinnati Children’s Hospital Medical Center 2-

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Total tissue was collected in RLT Plus buffer (Quiagen) supplemented with 0.1% 2-Mercaptoethanol in FastPrep lysing Matrix D tubes. Prior RNA extraction, total tissue collected in RLT Plus buffer were lysed using a FastPrep machine. Total RNA was extracted using an RNeasy Plus Micro Kit (Qiagen) according to manufacturer guidelines. The libraries were constructed according to manufacturer guidelines. (Illumina). Briefly, 350 to 900 ng of total RNA determined by Qbit high sensitivity spectrofluorometric measurement (Invitrogen) was poly-A selected and reverse transcribed using Illumina’s TruSeq RNA library preparation kit V2. Each sample was fitted with a unique adapter containing a 6 base molecular barcode for high level multiplexing. Prior sequencing, a 12 cycles of PCR amplification was performed on the samples.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: native tissue

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: jejunum

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: 1-Division of Pediatric General and Thoracic Surgery, Cincinnati Children’s Hospital Medical Center 2-

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: adult

text: normal

text: native tissue

text: Homo sapiens

text: Homo sapiens

text: jejunum

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: infant

text: normal

text: native tissue

text: Homo sapiens

text: Homo sapiens

text: jejunum

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mid/hindgut intestinal organoid cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Total tissue was collected in RLT Plus buffer (Quiagen) supplemented with 0.1% 2-Mercaptoethanol in FastPrep lysing Matrix D tubes. Human Intestinal Organoids (HIOs) were generated and maintained as previously described in Spence, J.R., Mayhew, C.N., Rankin, S.A., Kuhar, M.F., Vallance, J.E., Tolle, K., Hoskins, E.E., Kalinichenko, V.V., Wells, S.I., Zorn, A.M., et al. (2011). Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro. Nature 470, 105-109. Briefly, line H1 embryonic stem cells (WiCell Research Institute, Inc.) were grown in feeder-free conditions in Matrigel (BD Biosciences) coated six-well Nunclon surface plates (Nunc) and maintained in mTESR1 media (Stem Cell Technologies). For induction of definitive endoderm (DE), cells were passaged with Accutase (Stem Cell Technologies) and plated at a density of 65,000 cells per well in 24-well Nunc plates. Cells were allowed to grow in mTESR1 media for two days before treatment with 100 ng/ml of Activin A for three days as previously described. DE was then treated with hindgut induction medium (RPMI 1640, 100x NEAA, 2% dFCS,) for four days with 100 ng/ml FGF4 (R&D) and 3 µM Chiron 99021 (Tocris) to induce formation of mid-hindgut spheroids. Spheroids were then plated in Growth Factor Reduced (GFR) Matrigel and maintained in intestinal growth medium (Advanced DMEM/F-12, N2 supplement, B27 supplement, 15 mM HEPES, 2 mM L-glutamine, penicillin-streptomycin) supplemented with 100 ng/ml EGF (R&D) to generate human intestinal organoids (HIOs). Media was changed twice weekly thereafter. HIOs were replated in fresh Matrigel every 14 days. HIOs were prepared for transplantation as previously described in Watson, C.L., Mahe, M.M., Munera, J., Howell, J.C., Sundaram, N., Poling, H.M., Schweitzer, J.I., Vallance, J.E., Mayhew, C.N., Sun, Y., et al. (2014). An in vivo model of human small intestine using pluripotent stem cells. Nat Med 20, 1310-1314. Briefly, single matrigel embedded HIOs were transplanted into the mesentery of the mice. Mice were anesthetized with 2% inhaled isoflurane (Butler Schein), and the abdomen of the mouse was then shaved, and prepped in sterile fashion using isopropyl alcohol and povidine-iodine. A midline incision of approximately 2 cm was made in order for the intestine to be accessed. A small pocket was created in the mesentery and the HIO placed within. The skin was closed in a double layer and the mice were given a subcutaneous injection of Buprenex (0.05 mg/kg; Midwest Veterinary Supply) for pain management. Ten to twelve weeks following engraftment, the mice then underwent a secondary surgery with similar preparations. During this procedure, the engrafted tHIO was cut and briefly flushed before insertion of the gelatin capsule within the lumen of the tHIO. Mice were sacrificed and tissue harvested 14d postoperatively. Prior RNA extraction, total tissue collected in RLT Plus buffer were lysed using a FastPrep machine. Total RNA was extracted using an RNeasy Plus Micro Kit (Qiagen) according to manufacturer guidelines. The libraries were constructed according to manufacturer guidelines. (Illumina). Briefly, 350 to 900 ng of total RNA determined by Qbit high sensitivity spectrofluorometric measurement (Invitrogen) was poly-A selected and reverse transcribed using Illumina’s TruSeq RNA library preparation kit V2. Each sample was fitted with a unique adapter containing a 6 base molecular barcode for high level multiplexing. Prior sequencing, a 12 cycles of PCR amplification was performed on the samples.

text: normal

text: organoid transplanted on NSG mouse mesentery

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mid/hindgut intestinal organoid

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: TEAGASC

text: public

text: fermentation metagenome

text: fermentation metagenome

text: Kefir metagenomic sample (i24hd4) sequenced on the Illumina MiSeq

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: TEAGASC

characteristic: INSDC center name

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd5) sequenced on the Illumina MiSeq


text: TEAGASC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: fermentation metagenome

text: fermentation metagenome

text: Kefir metagenomic sample (i24hd6) sequenced on the Illumina MiSeq


text: TEAGASC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: food fermentation metagenome

text: food fermentation metagenome

text: Mock Community metagenomic sample sequenced on the Illumina MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd4) sequenced on the Illumina MiSeq


text: TEAGASC

text: public

characteristic: Submitter Id

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd5) sequenced on the Illumina MiSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd6) sequenced on the Illumina MiSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd4) sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd5) sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd6) sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Mock Community metagenomic sample sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd4) sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd5) sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd6) sequenced on the Illumina NextSeq


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd4) sequenced on the Ion Proton


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd5) sequenced on the Ion Proton


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (i24hd6) sequenced on the Ion Proton


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Mock Community metagenomic sample sequenced on the Ion Proton


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd4) sequenced on the Ion Proton


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd5) sequenced on the Ion Proton


text: TEAGASC

text: public

text: food fermentation metagenome

text: food fermentation metagenome

text: Kefir metagenomic sample (u24hd6) sequenced on the Ion Proton


text: CHENGDU INSTITUTE OF BIOLOGY, CAS

text: public

tag: Namespace:CHENGDU INSTITUTE OF BIOLOGY, CAS

characteristic: collection date

text: Mountain meadow

characteristic: environment (biome)

text: Soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Dry-rewett

characteristic: project name

text: soil metagenome

text: MiSeq Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: dw


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF TORONTO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF TORONTO

text: house mouse

characteristic: common name

text: KO M co_housed

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: poo

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF TORONTO

text: public

characteristic: Submitter Id

text: house mouse

text: WT F co_housed

text: Mus musculus

text: Mus musculus

text: poo


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F co_housed

text: Mus musculus

text: Mus musculus

text: poo


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M co_housed

text: Mus musculus

text: Mus musculus

text: poo


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO M co_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT F co_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F co_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M co_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO M co_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M co_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT F co_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F co_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO M single_housed

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT F single_housed

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F single_housed

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M single_housed

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO M single_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT F single_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F single_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M single_housed

text: Mus musculus

text: Mus musculus

text: colon


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO M single_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT F single_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F single_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M single_housed

text: Mus musculus

text: Mus musculus

text: ileum


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO M single_housed

text: Mus musculus

text: Mus musculus

text: poo


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT F single_housed

text: Mus musculus

text: Mus musculus

text: poo


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: KO F single_housed

text: Mus musculus

text: Mus musculus

text: poo


text: UNIVERSITY OF TORONTO

text: public

text: house mouse

text: WT M single_housed

text: Mus musculus

text: Mus musculus

text: poo


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: LSHTM

text: public

text: Trypanosoma cruzi

text: Trypanosoma cruzi

text: T.cruzi


text: LSHTM

text: public

text: Trypanosoma cruzi

text: Trypanosoma cruzi

text: T.cruzi Clone 3


parental

text: LSHTM

text: public

text: parental

text: Trypanosoma cruzi

text: Trypanosoma cruzi

text: T.cruzi Parental strain


text: KU LEUVEN

text: public

tag: Namespace:KU LEUVEN

characteristic: collection date

text: aquatic biome

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: wastewater sludge

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenomes

characteristic: project name

text: metagenomes

text: Illumina Miseq

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KU LEUVEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: aquatic biome

text: organic feature

text: wastewater sludge

text: Belgium

text: metagenome

text: metagenomes

characteristic: organism

text: Illumina Miseq

text: metagenomes

characteristic: title

text: wastewater/sludge


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: Escherichia coli

characteristic: common name

text: Escherichia coli

text: Escherichia coli

characteristic: subject id


text: QIMR

text: public

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: CENTRE FOR CANCER BIOLOGY

text: public

tag: Namespace:CENTRE FOR CANCER BIOLOGY

text: cells immortalized with hTERT (hTERT-BJ1)

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex

text: Foreskin Fibroblasts

characteristic: tissue type

text: small RNAs from human fibroblasts


text: Skin

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Skin

characteristic: phenotype

text: Mus musculus


text: Skin

text: female

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Female

text: Mus musculus

characteristic: organism

text: Skin

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:INSTITUTE OF SOIL SCIENCE, CHINESE ACADEMY OF SCIENCES

characteristic: collection date

text: temperate forest

characteristic: environment (biome)

text: mountain

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: fungal diversity in forest

characteristic: project name

text: soil metagenome

text: Miseq sequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Forest soil


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF SOIL SCIENCE, CHINESE ACADEMY OF SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: temperate forest

text: mountain

text: soil

text: China

text: metagenome

text: soil metagenome

text: fungal diversity in forest

text: soil metagenome

text: Miseq sequencing

text: soil

text: Forest soil


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: subtropical forest

characteristic: environment (biome)

text: mountain

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

characteristic: organism

text: fungal diversity in forest

text: soil metagenome

text: Miseq sequencing

text: soil

text: Forest soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: tropical forest

text: mountain

text: soil

text: China

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: fungal diversity in forest

characteristic: project name

text: soil metagenome

text: Miseq sequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Forest soil


text: ES

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: ES

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: C12 WT


text: ES

text: male

text: Mus musculus

text: ES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: C12 KO

characteristic: title


text: ES

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

text: ES

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: C13 WT


text: ES

text: male

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: ES

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: C13 KO


text: Es

text: male

text: Mus musculus

text: ES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: C14 WT


text: ES

text: male

text: Mus musculus

text: ES

characteristic: External Id

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: C14 KO


CNTC

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

text: public

text: CNTC

tag: Namespace:NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: All no-template 16 PCR control samples were combined and sequenced. None of the samples showed PCR bands on gels or had any measurable amount of PCR product (measured with qubit).

characteristic: description

text: No-template control samples of 16S PCR; combined sample

characteristic: isolation source

text: metagenome

text: metagenome


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: kit and PCR control samples

text: No-template biofilm DNA-extraction control number 1.

text: metagenome

text: metagenome


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: kit and PCR control samples

text: No-template biofilm DNA-extraction control number 2.

text: metagenome

text: metagenome


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: kit and PCR control samples

text: No-template biofilm DNA-extraction control number 3.

text: metagenome

text: metagenome


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: kit and PCR control samples

text: No-template water DNA-extraction control number 1.

text: metagenome

text: metagenome


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: kit and PCR control samples

text: No-template water DNA-extraction control number 2.

text: metagenome

text: metagenome


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: FZB

characteristic: INSDC center name

text: public

text: SOM

text: Mycobacterium tuberculosis complex bacterium

text: Mycobacterium

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: WGS of MTBC isolates

value: isoniazid

value: broth dilution

value: Mycobacterium tuberculosis

value: kanamycin

value: rifampin

value: streptomycin

value: ofloxacin

value: bedaquiline

value: prothionamide

value: moxifloxacin

value: pyrazinamide

value: cycloserine

value: ethambutol

value: delamanid

value: ethionamide

value: linezolid

value: capreomycin

value: para-aminosalicylic acid


text: FZB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: isoniazid

value: broth dilution

value: resistant

value: susceptible

value: amikacin


text: FZB

text: public

text: BEL

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: rifampin

value: Mycobacterium tuberculosis

value: ofloxacin


characteristic: ENA-FIRST-PUBLIC

text: FZB

text: public

text: BEL

characteristic: common name

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: moxifloxacin


characteristic: ENA-LAST-UPDATE

text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: pyrazinamide

value: kanamycin

value: streptomycin


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

characteristic: organism

text: WGS of MTBC isolates

value: ethambutol


text: FZB

text: public

text: ERI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

characteristic: title


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: DJI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: DJI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: DJI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: DJI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: DJI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: DJI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: ERI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: ethionamide


text: FZB

text: public

text: FIN

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: FIN

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: FIN

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: bedaquiline


text: FZB

text: public

text: SDN

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: capreomycin


text: FZB

text: public

text: IRL

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: ITA

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: ITA

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: ITA

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: NLD

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: NLD

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: NLD

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: linezolid


text: FZB

text: public

text: NOR

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: isoniazid


text: FZB

text: public

text: NOR

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: broth dilution


text: FZB

text: public

text: NOR

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: resistant

value: delamanid

value: para-aminosalicylic acid

value: cycloserine


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: susceptible

value: Mycobacterium tuberculosis

value: rifampin

value: amikacin


text: FZB

text: public

text: SOM

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: pyrazinamide

value: kanamycin

value: moxifloxacin


text: FZB

text: public

text: ERI

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: streptomycin

value: ethambutol

value: ethionamide


text: FZB

text: public

text: ETH

text: Mycobacterium

text: Homo sapiens

text: WGS of MTBC isolates

value: linezolid

value: capreomycin

value: bedaquiline