E-MTAB-6344:BIT at 50% MIC_rep2

text: Cardiff University

text: public

text: E-MTAB-6344:BIT at 50% MIC_rep2

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BIT at 50% MIC_rep2


E-MTAB-6344:BIT at 50% MIC_rep3

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cardiff University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6344:BIT at 50% MIC_rep3

tag: Namespace:Cardiff University

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: In total 7 test conditions (termed 1-7) and one control condition (growth in liquid media) were included, each with 4 biological replicates. The results from the test conditions were compared to the control, to determine differentially expressed genes when the industrial strain was exposed to the preservatives and product formulations. Test conditions included: 1) The preservative benzisothiazolinone (BIT) at 20% of the minimum inhibitory concentration (MIC) 2) BIT at 50% of the MIC 3) Phenoxyethanol (POE) at 20% of the MIC 4) POE at 50% of the MIC 5) BIT and POE in combination, both at 20% of the MIC 6) Unpreserved laundry detergent (LD) 7) Laundry detergent (LD) in combination with BIT at 20% of the MIC. After exposure to the control and test conditions for 24 hours the cultures for each of the sample replicates were promptly snap-cooled in an ethanol and dry ice bath, before centrifuging at 20,000 x g at 4ºC for 1 minute. The supernatant was removed and pellets were immediately snap-frozen and stored at -80ºC until required. Total RNA was extracted within one week of harvesting cells using the RiboPure™ RNA Purification Bacteria Kit (Ambion, Life Technologies Ltd, UK) according to the manufacturer’s instructions. A MICROBExpress™ bacterial mRNA enrichment kit (Ambion), was used to enrich for messenger RNA (mRNA) from the extracged total RNA. Complementary DNA (cDNA) library preparations and sequencing were carried out in collaboration with the Genomics Research Hub at Cardiff School of Biosciences. The Illumina® TruSeq® Stranded mRNA Sample Preparation Kit was used to prepare sequencing libraries with the low sample protocol. The manufacturer’s instructions describing the use of the protocol with previously isolated mRNA was followed; 5 μl of enriched mRNA within the Illumina recommended concentration range of 10 - 400 ng was added to 13 μl of the fragment, prime, finish mix to prepare sequencing libraries for each sample.

characteristic: description

text: wild type

characteristic: genotype

text: benzisothiazolinone at 50% minimum inhibitory concentration

characteristic: growth condition

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BIT at 50% MIC_rep3

characteristic: title


E-MTAB-6344:BIT at 50% MIC_rep4

text: Cardiff University

text: public

text: E-MTAB-6344:BIT at 50% MIC_rep4

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BIT at 50% MIC_rep4


E-MTAB-6344:BITandPOE at 20%_rep1

text: Cardiff University

text: public

text: E-MTAB-6344:BITandPOE at 20%_rep1

text: ArrayExpress

text: wild type

text: benzisothiazolinone and phenoxyethanol at 20% minimum inhibitory concentration

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BITandPOE at 20%_rep1


E-MTAB-6344:BITandPOE at 20%_rep2

text: Cardiff University

text: public

text: E-MTAB-6344:BITandPOE at 20%_rep2

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BITandPOE at 20%_rep2


E-MTAB-6344:BITandPOE at 20%_rep3

text: Cardiff University

text: public

text: E-MTAB-6344:BITandPOE at 20%_rep3

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BITandPOE at 20%_rep3


E-MTAB-6344:BITandPOE at 20%_rep4

text: Cardiff University

text: public

text: E-MTAB-6344:BITandPOE at 20%_rep4

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: BITandPOE at 20%_rep4


text: Cardiff University

text: public

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


name: E-MTAB-6344:Laundry Detergent  and BIT_rep1

text: Cardiff University

text: public

text: ArrayExpress

text: wild type

text: laundry detergent and benzisothiazolinone at 20% minimum inhibitory concentration

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent and BIT_rep1


name: E-MTAB-6344:Laundry Detergent  and BIT_rep2

text: Cardiff University

text: public

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent and BIT_rep2


name: E-MTAB-6344:Laundry Detergent  and BIT_rep3

text: Cardiff University

text: public

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent and BIT_rep3


name: E-MTAB-6344:Laundry Detergent and BIT_rep4

text: Cardiff University

text: public

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent and BIT_rep4


E-MTAB-6344:Laundry Detergent only_rep1

text: Cardiff University

text: public

text: E-MTAB-6344:Laundry Detergent only_rep1

text: ArrayExpress

text: wild type

text: laundry detergent

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent only_rep1


E-MTAB-6344:Laundry Detergent only_rep2

text: Cardiff University

text: public

text: E-MTAB-6344:Laundry Detergent only_rep2

text: ArrayExpress

text: wild type

text: laundry detergent

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent only_rep2


E-MTAB-6344:Laundry Detergent only_rep3

text: Cardiff University

text: public

text: E-MTAB-6344:Laundry Detergent only_rep3

text: ArrayExpress

text: wild type

text: laundry detergent

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent only_rep3


E-MTAB-6344:Laundry Detergent only_rep4

text: Cardiff University

text: public

text: E-MTAB-6344:Laundry Detergent only_rep4

text: ArrayExpress

text: wild type

text: laundry detergent

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Laundry Detergent only_rep4


E-MTAB-6344:POE at 20% MIC_rep1

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 20% MIC_rep1

text: ArrayExpress

text: wild type

text: phenoxyethanol at 20% minimum inhibitory concentration

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 20% MIC_rep1


E-MTAB-6344:POE at 20% MIC_rep2

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 20% MIC_rep2

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 20% MIC_rep2


E-MTAB-6344:POE at 20% MIC_rep3

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 20% MIC_rep3

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 20% MIC_rep3


E-MTAB-6344:POE at 20% MIC_rep4

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 20% MIC_rep4

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 20% MIC_rep4


E-MTAB-6344:POE at 50% MIC_rep1

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 50% MIC_rep1

text: ArrayExpress

text: wild type

text: phenoxyethanol at 50% minimum inhibitory concentration

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 50% MIC_rep1


E-MTAB-6344:POE at 50% MIC_rep2

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 50% MIC_rep2

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 50% MIC_rep2


E-MTAB-6344:POE at 50% MIC_rep3

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 50% MIC_rep3

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 50% MIC_rep3


E-MTAB-6344:POE at 50% MIC_rep4

text: Cardiff University

text: public

text: E-MTAB-6344:POE at 50% MIC_rep4

text: ArrayExpress

text: wild type

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: POE at 50% MIC_rep4


text: INSTITUTE OF CANCER RESEARCH

text: public

tag: Namespace:INSTITUTE OF CANCER RESEARCH

text: HeLa

characteristic: cell line

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: PARP1 RT-PCR from talazoparib-resistant HeLa cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSTITUTE OF CANCER RESEARCH

text: public

text: human

text: Clone 5 with dense tiling library

text: Homo sapiens

text: Homo sapiens

text: PARP1 RT-PCR from talazoparib-resistant SUM149 cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUTE OF CANCER RESEARCH

text: public

text: human

text: Clone 8 with dense tiling library

text: Homo sapiens

text: Homo sapiens


text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


Rhopalosiphum padi

text: The James Hutton Institute

text: public

text: Rhopalosiphum padi

tag: Namespace:The James Hutton Institute

text: whole body

characteristic: cell type

text: Carmen M. Escudero-Martinez

characteristic: collected by

text: bird cherry-oat aphid

text: Rhopalosiphum padi clonal line transcriptome responses to being reared on host (barley), nonhost (Arabidopsis) and artificial diet at time points 3hours and 24 hours

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Dundee

characteristic: geographic location (region and locality)

text: asexual parthenogenesis

characteristic: mating type

text: Rhopalosiphum padi

characteristic: organism

text: Rhopalosiphum padi

text: Rhopalosiphum padi host nonhost and artificial diet


text: Leishmania donovani

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Leishmania donovani

characteristic: common name

text: Leishmania donovani

text: Leishmania donovani

characteristic: subject id

text: MHOM/NP/03/282/0 cl4 G7

characteristic: title


text: Leishmania donovani

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 H8


text: Leishmania donovani

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 I9


text: Leishmania donovani

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 J10


text: Leishmania donovani

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 B2


text: Leishmania donovani

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 C3


text: Leishmania donovani

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 D4


text: Leishmania donovani

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 E5


text: Leishmania donovani

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani

text: Leishmania donovani

text: MHOM/NP/03/282/0 cl4 F6


text: public

tag: Namespace:Institute for Diabetes and Cancer (IDC), Helmholtz Zentrum Munchen, German Research Center for Environmental Health, Neuherberg, Germany

text: ArrayExpress

characteristic: broker name

text: adipocyte

characteristic: cell type

text: human

text: Protocols: Cells were harvested with TRIzol reagent (Invitrogen) 3 h after stimulation with NE. Human primary adipose-derived stem cells (hpASCs) were isolated from subcutaneous lipoaspirates from healthy female donors (n=4). Cells at P0 were thawed, cultivated in EGM-2 Medium (Lonza), and used after 1-3 passages. For adipocyte differentiation, cells were seeded in 6-well plates (85000 cells / well) in EGM-2 Medium. Cells reached 100% confluence after 3 days, when the medium was replaced with fresh EGM-2 Medium. 2 days later (= day 0), adipocyte differentiation was induced by changing the medium to adipocyte differentiation (AD) medium (DMEM/Ham’s F12 (50:50), 5 mM HEPES, 2 mM L-glutamine, 100 µg/ml normocin, 860 nM insulin, 10 µg/ml apo-transferrin, 100 nM rosiglitazone, 0.2 nM triiodothyronin) supplemented with 100 µM 3-isobutyl-1-methylxanthine (IBMX), and 1 µM dexamethasone (Dex). Medium was replaced at days 2 and 5 with AD medium. At day 7, another medium change was performed using AD medium without insulin. Adipogenesis was monitored and confirmed based on the appearance of lipid droplets by microscopy At day 9 after differentiation, norepinephrine (NE) stimulation was performed by changing the medium to AD medium without insulin, but supplemented with 25 µg/mL ascorbate and either 1 µM norepinephrine (NE; dissolved in 10 mM HCl) or vehicle (VE, 10 mM HCl). RNA isolation was performed with TRIzol reagent (Invitrogen), according to the manufacturer's protocol. Quality of RNA was assayed by an RNA Nano chip using the BioAnalyzer 2100 (Agilent); all samples had RIN values ≥8.5 4 µg total RNA per sample were used with the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina) to generate cDNA libraries according to the manufacturer’s protocol.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

characteristic: organism part

text: adipose tissue derived mesenchymal stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: female

characteristic: sex

text: noradrenaline, 1 micromolar

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Diabetes and Cancer (IDC), Helmholtz Zentrum Munchen, German Research Center for Environmental Health, Neuherberg, Germany

text: public

text: ArrayExpress

text: adipocyte

text: human

characteristic: common name

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female

text: noradrenaline, 1 micromolar

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: adipocyte

text: human

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

text: female


text: public

tag: Namespace:South African Sugarcane Research Institute

text: Shailesh Vinay Joshi, South African Sugarcane Research Institute

characteristic: collected by

characteristic: collection date

characteristic: cultivar

text: Using 12 novel PCR primers the complete chloroplast genome of Saccharum kanashiroi was amplified. Subsequent to Illumina sequencing the chloroplast was assembled with SPAdes, polished with Pilon and annotated with a novel pipeline based on Verdant

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal, Mount Edgecombe

characteristic: geographic location (region and locality)

text: Dyfed Lloyd Evans

characteristic: identified by

text: Saccharum kanashiroi

text: Saccharum kanashiroi

text: leaf

characteristic: tissue type

text: Chloroplast isolation, sequencing and aassembly of Saccharum kanashiroi


name: Myzus persicae genotype O JHI clonal line1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The James Hutton Institute

text: public

text: whole body

characteristic: cell type

text: Carmen M. Escudero-Martinez

text: green peach aphid

characteristic: common name

text: Myzus persicae genotype O clonal line transcriptome responses to being reared on host (Arabidopsis), nonhost (barley) and artificial diet at time points 3hours and 24 hours

text: United Kingdom

text: Dundee, Invergowrie

text: asexual parthenogenesis

characteristic: mating type

text: Myzus persicae

text: Myzus persicae

text: Myzus persicae genotype O JHI clonal line reared on host, nonhost and artificial diet


text: South African Sugarcane Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Assembly of the complete chloroplast or Saccharum spontaneum cultivar SES196 from Illumina reads. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: Saccharum spontaneum

characteristic: organism

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar SES196

characteristic: title


text: public

characteristic: Submitter Id

text: Kalimpon

characteristic: cultivar

text: Assembly of the complete chloroplast or Saccharum procerum cultivar Kalimpon from Illumina reads. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

characteristic: description

text: Saccharum procerum

text: Saccharum procerum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum procerum cultivar Kalimpon


characteristic: ENA-CHECKLIST

text: public

text: Assembly of the complete chloroplast of Saccharum rufipilum cultivar US57-060 from Illumina reads. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: Saccharum rufipilum

text: Saccharum rufipilum

text: leaf

characteristic: tissue type

text: Chloroplast isolation, sequencing and assembly of Saccharum rufipilum cultivar US57-060


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

text: Not provided

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Daily

text: false

text: true

text: false

text: true

text: false

text: true

text: false

characteristic: allergic to i have no food allergies that i know of

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: I have not taken antibiotics in the past year.

text: true

text: Not provided

text: I do not have this condition

characteristic: asd

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: Not provided

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: One

text: I tend to have normal formed stool

text: false

text: Not provided

characteristic: cancer

text: Not provided

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: West

text: true

characteristic: chickenpox

characteristic: clinical condition

characteristic: collection date

text: May

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2013-05-22 07:25

text: Not sure

text: No

characteristic: contraceptive

text: Never

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Not provided

text: false

characteristic: csection

text: I do not use deodorant or an antiperspirant

text: I do not have this condition

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: Filtered

text: Not provided

text: Southwest

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Outdoors

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: I have not gotten the flu vaccine in the past year.

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: USA

text: I was diagnosed with celiac disease

text: true

text: centimeters

text: Rarely (less than once/week)

text: Daily

text: human

text: d39d7b6dcb4e3409b109339a357a58596b15ad62d13065ad295019bab8d63c84f51fbb2c88bbcf8bd90025017d823be9116f4ef5f6dd96fbe4ac3007295d190a

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: I have lived in my current state of residence for more than a year.

text: I have not been outside of my country of residence in the past year.

text: Some college or technical school

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Never

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: Daily

text: Regularly (3-5 times/week)

text: human gut metagenome

text: true

text: Not provided

text: UCSDMI

text: true

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: false

text: Rarely (less than once/week)

text: Rarely (a few times/month)

text: true

text: Caucasian

text: Never

text: Occasionally (1-2 times/week)

text: false

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: true

text: male

text: I do not have this condition

text: I do not have this condition

text: 5-6 hours

text: Never

text: false

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: AZ

text: true

text: true

text: true

text: true

text: true

text: true

text: Rarely (less than once/week)

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: false

text: More than 30

text: Daily

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Rarely (a few times/month)

text: Never

text: Not provided

text: Remained stable

text: kilograms

text: Regularly (3-5 times/week)

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Not provided

text: false

characteristic: acne medication

text: false

text: Not provided

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Rarely (a few times/month)

text: false

text: false

text: false

text: false

text: true

text: false

text: false

characteristic: allergic to i have no food allergies that i know of

text: false

text: false

text: false

text: false

text: true

text: Not provided

characteristic: alzheimers

characteristic: anonymized name

text: false

text: Not provided

text: Not provided

characteristic: asd

text: Not provided

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Overweight

text: Not provided

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: false

text: Not provided

text: Northeast

text: true

text: Not provided

text: May

text: Spring

text: 2013-05-21 16:45

text: Not provided

text: Not provided

text: Rarely (a few times/month)

text: USA

text: United States

text: Not provided

text: false

text: I use deodorant

text: Not provided

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: false

text: I am right handed

text: City

text: Not provided

text: New England

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: Not provided

text: Occasionally (1-2 times/week)

text: Indoors

text: Not provided

text: Not provided

text: Regularly (3-5 times/week)

text: Year

text: Not provided

text: Not provided

text: Not provided

text: USA

text: No

text: true

text: centimeters

text: Not provided

text: Not provided

text: human

text: d63484fec8c78056306a841bf283219a2f4dd6eb40568afb6e401ef1dd5a23f563b4e42b92eda0d4b87cc502d1158abf83fac1a38b7a4166f4374fd6ec75beaa

text: I do not have this condition

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: false

text: Not provided

text: Not provided

text: Not provided

text: false

text: Not provided

text: I do not have this condition

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: I do not have this condition

text: Not provided

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: Not provided

text: Not provided

text: human gut metagenome

text: true

text: Not provided

text: UCSDMI

text: true

text: I do not have this condition

text: Rarely (a few times/month)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: true

text: Caucasian

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Stool

text: human gut metagenome

text: Not provided

text: false

text: female

text: Not provided

text: I do not have this condition

text: 7-8 hours

text: Never

text: false

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: NH

text: true

text: true

text: true

text: true

text: true

text: true

text: Not provided

text: Not provided

text: Daily

text: Not provided

text: American Gut Project

text: false

text: 6 to 10

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Remained stable

text: kilograms

text: Not provided

text: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: altitude

text: USA

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: TRUE

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: TRUE

characteristic: public

text: metagenome

text: American Gut Project

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: USA

text: TRUE

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: TRUE

text: metagenome

text: UCSDMI

text: TRUE

text: TRUE

text: metagenome

text: American Gut Project


text: UCSDMI

characteristic: INSDC first public

text: public

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: description

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA

characteristic: geo loc name

text: TRUE

text: human

characteristic: host common name

characteristic: host taxid

text: human gut metagenome

text: UCSDMI

text: TRUE

text: TRUE

text: human gut metagenome

text: American Gut Project


text: Cryptosporidium hominis

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Cryptosporidium hominis

characteristic: common name

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

text: icddr,b 3

characteristic: title


text: Cryptosporidium hominis

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 4


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 8


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 12


text: Cryptosporidium hominis

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

characteristic: subject id

text: icddr,b 13


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 14


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 16


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 19


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 20


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 21


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 22


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 23


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 24


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 26


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 27


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 30


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 31


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 32


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 33


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 34


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 35


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 36


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 37


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 38


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 39


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 41


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 42


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 49


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 50


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 51


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 54


E-MTAB-6349:Sample 1

text: public

text: E-MTAB-6349:Sample 1

tag: Namespace:Center for Sustainable Resource Science, RIKEN

text: ArrayExpress

characteristic: broker name

text: Protocols: We cultured E. agilis in mAC, AF-6, and C media for mRNA preparation. E Each culture was maintained in 100 mL volume test tubes for more than 3 days using 50 mL of either culture media type at 29°C with aeration (50 mL/min) and constant illumination (100 μmol photon/m2s). Total RNA was extracted from cells using NucleoSpin RNA (Macherey-Nagel, USA). A sequencing library was constructed using a TruSeq Stranded mRNA LT Sample Preparation Kit (Illumina, Inc.) according to the manufacturer’s instructions (TruSeq Stranded mRNA Sample Preparation Guide Rev. E; Illumina, Inc.).

characteristic: description

text: Euglena agilis

text: Euglena agilis

text: whole organism

characteristic: organism part

text: Euglena agilis

characteristic: strain

text: Sample 1


text: mouse

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus Musculus


text: human

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC first public

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Dealing with the adaptive immune system during de novo evolution of genes from intergenic sequences

characteristic: title


text: MAX PLANCK INSTITUTE FOR EVOLUTIONARY BIOLOGY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


Myzus cerasi RNAseq on different hosts

text: The James Hutton Institute

text: public

text: Myzus cerasi RNAseq on different hosts

characteristic: Submitter Id

text: whole body

characteristic: cell type

text: black cherry aphid

text: Myzus cerasi was maintained on American Land cress within our laboratory. However, we could not successfully infest cress with aphids taken directly off its primary host (cherry). However, when aphid were temporarily reared on Gallium the aphids were then able to colonise cress. Therefore, in order to infest cress we hypothesise that some transcriptional changes need to be induced, which are when aphid are reared on Gallium. We conducted RNAseq analysis of aphids reared on cherry, Gallium and cress. Differential expression analysis reveals a two-mode transcription response for M. cerasi: one for the primary host (Cherry) and a different set for its secondary hosts (Cress and Galium).

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Dundee

characteristic: geographic location (region and locality)

text: Myzus cerasi

text: Myzus cerasi

text: Myzus cerasi RNAseq on different hosts


text: CORNELL UNIVERSITY

text: public

tag: Namespace:CORNELL UNIVERSITY

characteristic: collection date

text: Soils collected from an engineered column created to test how different plant species affected nitrogen removal rates through the column and the microbial population within the soil. Samples were collected from the Top zone affected by plant roots, and a Bottom zone where plant roots were not affecting the soil.

characteristic: description

text: greenhouse

characteristic: environment (biome)

text: urban bioretention column

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Australia

text: 37.8136 S

unit: DD

characteristic: geographic location (latitude)

text: 144.9631 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: soil metagenome

text: Bioretention Column Soil Metagenomics - Monash University

characteristic: project name

text: soil metagenome

text: illumina HiSeq

characteristic: sequencing method

text: Bioretention Column Soil Metagenomics


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CORNELL UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: greenhouse

text: urban bioretention column

text: soil

text: Australia

text: 37.8136 S

text: 144.9631 E

text: metagenome

text: metagenomes

characteristic: organism

text: metagenomes

text: illumina HiSeq

text: Bioretention Column Soil Metagenomics

characteristic: title


text: DTU-GE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: DTU Bioinformatics

characteristic: broker name

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geo loc name

text: Poland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF COLOGNE

text: human

characteristic: common name

text: Somatic events only

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Clonal evolution of CLL under venetoclax treatment


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:THE ROSLIN INSTITUTE

characteristic: Submitter Id

text: days

text: transcription profiling by high throughput sequencing

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter L1 (barren environment, 4 hr)

text: polyA RNA

characteristic: experiment target

text: Edinburgh Genomics, The University of Edinburgh, EH9 3FL, Edinburgh, Scotland

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: barren

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter L1 (enriched environment, 1 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter L1 (enriched environment, 4 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

text: frontal cortex of male piglet from litter L1 (barren environment, 1 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: barren

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter L2 (barren environment, 1 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter L2 (enriched environment, 4 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: Large White x Landrace

text: frontal cortex

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text: frontal cortex of male piglet from litter L2 (enriched environment, 1 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: enriched

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter L2 (barren environment, 4 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter L3 (enriched environment, 4 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

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text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

text: frontal cortex of male piglet from litter L3 (barren environment, 1 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: barren

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter L3 (barren environment, 4 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter L3 (enriched environment, 1 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

text: frontal cortex of male piglet from litter R4 (barren environment, 4 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: barren

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter R4 (enriched environment, 1 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter R4 (barren environment, 1 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: transcription profiling by high throughput sequencing

text: Large White x Landrace

text: frontal cortex

text: pig

text: frontal cortex of male piglet from litter R4 (enriched environment, 4 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: enriched

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter L6 (barren environment, 4 hr)

text: polyA RNA

text: Edinburgh Genomics, The University of Edinburgh, EH9 3FL, Edinburgh, Scotland

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter L6 (enriched environment, 4 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

text: frontal cortex of male piglet from litter L6 (barren environment, 1 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: barren

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter L6 (enriched environment, 1 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter R2 (barren environment, 4 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

text: frontal cortex of male piglet from litter R2 (enriched environment, 4 hr)

text: polyA RNA

characteristic: experiment target

text: decimal degrees

text: decimal degrees

characteristic: litter

text: Sus scrofa

characteristic: organism

text: RNAlater

characteristic: sample storage

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

characteristic: sex

characteristic: timepoint

characteristic: title

text: enriched

characteristic: treatment

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: days

text: Large White x Landrace

text: frontal cortex

text: pig

characteristic: common name

text: frontal cortex of male piglet from litter R2 (barren environment, 1 hr)

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: barren

text: kg


text: THE ROSLIN INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: days

characteristic: assay type

text: Large White x Landrace

characteristic: breed

text: frontal cortex

characteristic: cell or tissue type

text: pig

characteristic: date of birth

text: frontal cortex of male piglet from litter R2 (enriched environment, 1 hr)

characteristic: description

text: polyA RNA

text: decimal degrees

text: decimal degrees

text: Sus scrofa

text: RNAlater

text: Sus scrofa

text: decimal degrees

text: decimal degrees

text: male

text: enriched

text: kg


text: public

tag: Namespace:Institut d'Investigacio Sanitaria de Palma

text: HUMAN

characteristic: isolate

text: Pseudomonas aeruginosa

characteristic: organism

characteristic: receipt date

text: Pseudomonas aeruginosa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut d'Investigacio Sanitaria de Palma

text: public

text: HUMAN

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


BX

text: James Hutton Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BX

tag: Namespace:James Hutton Institute

text: pine wood nematode

characteristic: common name

text: Total RNA isolated from approximately 200 mixed dorsal and subventral glands microaspirated from mixed life stage pine wilt nematodes, Bursaphelenchus xylophilus.

text: Mixed

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: Pinus thunbergii

characteristic: host scientific name

text: Botrytis cinerea

characteristic: lab host

text: Bursaphelenchus xylophilus

text: Bursaphelenchus xylophilus

text: Mixed dorsal and subventral gland cells

characteristic: tissue type

text: Bursaphelenchus xylophilus gland cells RNA-Seq


text: South African Sugarcane Research Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Using 12 novel PCR primers, the complete sequence of Sorghum (Sarga) timorense was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

characteristic: description

text: United Kingdom

text: Cambridgeshire, Cambridge

characteristic: geographic location (region and locality)

text: Sorghum timorense

text: Sorghum timorense

text: leaf

text: Chloroplast isolation, sequencing and assembly of the Sorghum (Sarga) timorense chloroplast


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

text: Salmonella enterica subsp. enterica serovar Infantis

text: Germany

text: Salmonella enterica

characteristic: isolate

text: environment

characteristic: isolation source

characteristic: organism

text: Infantis

characteristic: serovar

text: enterica

characteristic: sub species

text: ENGAGE-project Salmonella strains from BfR

characteristic: title


characteristic: External Id

text: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: common name

text: Germany

characteristic: geographic location (country and/or sea)

text: Salmonella enterica

text: environment

text: Infantis

text: enterica


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:LIVERPOOL SCHOOL OF TROPICAL MEDICINE

characteristic: Submitter Id

text: African malaria mosquito

text: Ribosomal RNA-depleted RNA from a pool of 10 whole adult female mosquitoes from the FANG colony, unexposed to any insecticide.

characteristic: description

text: Anopheles funestus

text: Anopheles funestus

text: Anopheles funestus FANG colony


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Ribosomal RNA-depleted RNA from a pool of 10 whole adult female mosquitoes derived from Ghana, surviving exposure to permethrin for 60 minutes.

text: Anopheles funestus

text: Anopheles funestus

text: Ghanaian Anopheles funestus, permethrin-resistant (replicate 1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

characteristic: organism

text: Anopheles funestus

text: Ghanaian Anopheles funestus, permethrin-resistant (replicate 2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Ghanaian Anopheles funestus, permethrin-resistant (replicate 3)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Ribosomal RNA-depleted RNA from a pool of 10 whole adult female mosquitoes derived from Cameroon, surviving exposure to permethrin for 60 minutes.

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, permethrin-resistant (replicate 1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, permethrin-resistant (replicate 2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, permethrin-resistant (replicate 3)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Ribosomal RNA-depleted RNA from a pool of 10 whole adult female mosquitoes derived from Malawi, surviving exposure to permethrin for 60 minutes.

text: Anopheles funestus

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-resistant (replicate 1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-resistant (replicate 2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Ribosomal RNA-depleted RNA from a pool of 10 whole adult female mosquitoes derived from Uganda, surviving exposure to permethrin for 60 minutes.

text: Anopheles funestus

text: Anopheles funestus

text: Ugandan Anopheles funestus, permethrin-resistant (replicate 1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Ugandan Anopheles funestus, permethrin-resistant (replicate 2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

text: Ugandan Anopheles funestus, permethrin-resistant (replicate 3)


text: NCGR

text: public

text: common wild rice

text: Oryza rufipogon

text: Oryza rufipogon


text: NCGR

text: public

text: rice

text: Oryza sativa

text: Oryza sativa


text: public

tag: Namespace:NATIONAL CANCER CENTER, REPUBLIC OF KOREA

characteristic: age

text: human

characteristic: fnlcc

text: Homo sapiens

text: Homo sapiens

text: F

characteristic: sex

text: Undifferentiated pleomorphic sarcoma

characteristic: type


characteristic: External Id

text: NATIONAL CANCER CENTER, REPUBLIC OF KOREA

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: M

characteristic: title

text: Undifferentiated pleomorphic sarcoma


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: F

text: Leiomyosarcoma


text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens

text: M

text: Leiomyosarcoma


text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: F

text: Undifferentiated pleomorphic sarcoma


characteristic: ENA-CHECKLIST

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: M

text: Ewing sarcoma


characteristic: ENA-FIRST-PUBLIC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: M

text: Myxofibrosarcoma


characteristic: ENA-LAST-UPDATE

text: GNS

text: public

characteristic: collection date

text: Geothermal spring water column

characteristic: description

text: Yes

characteristic: environmental sample

text: New Zealand

characteristic: geographic location (country and/or sea)

text: Taupo Volcanic Zone

characteristic: geographic location (region and locality)

text: Geothermal spring

characteristic: isolation source

text: uncultured prokaryote

characteristic: ph

text: uncultured prokaryote

characteristic: temperature

text: 1000 Springs Project sample


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Shailesh Vinay Joshi, South African Sugarcane Research Institute

characteristic: collected by

characteristic: cultivar

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar B4326 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

characteristic: identified by

text: Saccharum spontaneum

characteristic: organism

text: Saccharum spontaneum

text: leaf

characteristic: tissue type

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar B4326

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Max-Planck-Institute of Biochemistry

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: plasmid pLTMV-6 reconstructed from metavirome data of Lake Tyrrell (SRR402039, SRR402041-7)

text: virtual sample from samples SRS290205- (https://www.ebi.ac.uk/ena/data/view/SRS290205) SRS290212 (https://www.ebi.ac.uk/ena/data/view/SRS290212)

characteristic: note

text: viral metagenome

text: viral metagenome


Koshihikari

characteristic: External Id

text: NCGR

text: public

text: Koshihikari

text: rice

characteristic: common name

text: Oryza sativa

text: Oryza sativa

text: Koshihikari


Kasalath

text: NCGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Kasalath

text: rice

text: Oryza sativa

text: Oryza sativa

text: Kasalath


text: South African Sugarcane Research Institute

text: public

characteristic: collected by

characteristic: collection date

text: Daruka Viko Damu

characteristic: cultivar

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Daruka Viko Damu was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal, Mount Edgecombe

characteristic: geographic location (region and locality)

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Daruka Viko Damu


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar IJ76-287 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

characteristic: identified by

text: Saccharum spontaneum

characteristic: organism

text: Saccharum spontaneum

text: leaf

characteristic: tissue type

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar IJ76-287

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Iran II

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Iran II was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Iran II


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collected by

text: Kloet

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Kloet was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Kloet


text: NCGR

text: public

text: rice

characteristic: common name

text: Oryza sativa

text: Oryza sativa


text: public

characteristic: collection date

text: Djatiroto

characteristic: cultivar

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Djatiroto was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

characteristic: description

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal, Mount Edgecombe

characteristic: geographic location (region and locality)

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Djatiroto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Nigeria 1

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Nigeria 1 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

characteristic: identified by

text: Saccharum spontaneum

characteristic: organism

text: Saccharum spontaneum

text: leaf

characteristic: tissue type

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Nigeria 1


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Shailesh Vinay Joshi, South African Sugarcane Research Institute

text: Tainan

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Tainan was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Tainan

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: collected by

text: Taiwan 96

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Taiwan 96 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Taiwan 96


text: Shigella boydii

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Shigella boydii

characteristic: common name

text: Shigella boydii

text: Shigella boydii

characteristic: subject id


text: Shigella dysenteriae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Shigella dysenteriae

text: Shigella dysenteriae

text: Shigella dysenteriae


text: Neisseria gonorrhoeae

text: SC

text: public

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae


text: Enterococcus faecium

text: SC

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium


text: Erysipelothrix rhusiopathiae

text: SC

text: public

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae


text: Aerococcus viridans

text: SC

text: public

text: Aerococcus viridans

text: Aerococcus viridans

text: Aerococcus viridans


text: Campylobacter ureolyticus

text: SC

text: public

text: Campylobacter ureolyticus

text: Campylobacter ureolyticus

text: Campylobacter ureolyticus


text: Enterobacter cloacae

text: SC

text: public

text: Enterobacter cloacae

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Micrococcus luteus

text: SC

text: public

text: Micrococcus luteus

text: Micrococcus luteus

text: Micrococcus luteus


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Melanoma

text: Skin tumour

text: Cancer

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Cancer

characteristic: phenotype

text: Mus musculus


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-6347:Sample 1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6347:Sample 1

tag: Namespace:CeBiTec Bielefeld University, IGZ Großbeeren

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Tizian

characteristic: cultivar

text: Protocols: After two months of cultivation, a young plant at the six leaf stage was selected, flash frozen and ground to a fine powder using a sterile pestle and mortar with liquid nitrogen. Lettuce ( Lactuca sativa var. longifolia) cv. Tizian was cultivated under controlled ‘axenic’ conditions. Prior to cultivation, the industrial seed coating was removed with a sterilized pestle and mortar. The seeds were washed with sterile water and subsequently surface sterilized in 5% sodium hypochlorite for 15 minutes. Afterwards, the seeds were washed again three times with sterile water. The seeds were placed on Petri dishes containing a Murashige and Skoog Basal Salt Mixture (MS) agarose medium (4.4 g per liter, Sigma-Aldrich Chemie GmbH) and incubated in a cultivation chamber with a 16/8 h day/night cycle and a temperature of 16 °C. After germination, the seedlings were transferred to Petri dishes with a MS (4.4 g per liter) agarose medium supplemented with sucrose (30 g per liter) in order to check for microbial contaminations. DNA was extracted with the DNeasy Plant Mini Kit (Qiagen, Hilden, Germany). Two sequencing libraries were constructed, one Nextera Mate-Pair library with a Mate-pair distance length of 9 kb on average and a TruSeq PCR-free whole genome shotgun library (Illumina Inc., San Diego, U.S.A.).

characteristic: description

text: LP.06 six leaves visible stage

characteristic: developmental stage

text: polyploid

characteristic: karyotype

text: Lactuca sativa var. longifolia

text: Lactuca sativa var. longifolia

text: Lactuca sativa var. longifolia

text: Sample 1

characteristic: title


text: Homo sapiens

tag: attribute

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id


text: Canis lupus familiaris

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH

text: house mouse

text: Isl1-positive CPC from e8.5

text: embryonic

characteristic: dev stage

text: Mus musculus

text: Mus musculus


text: MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH

text: public

text: house mouse

text: Isl1-positive CPC from e8.5

characteristic: description

text: embryonic

text: Mus musculus

text: Mus musculus


text: public

text: house mouse

text: Isl1-positive CPC from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: NTNU

text: public

characteristic: Latitude End

characteristic: Longitude End

unit: m

characteristic: depth

text: Troll oil incubation at 13C-day0

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

unit: practical salinity unit

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

characteristic: sampling site

text: marine metagenome

unit: ºC

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: Troll oil incubation at 13C-day7

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: title


text: NTNU

text: public

characteristic: depth

text: Troll oil incubation at 13C-day14

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

characteristic: sampling site

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: Troll oil incubation at 13C-day30

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: temperature


text: NTNU

text: public

characteristic: depth

text: Grane oil incubation at 13C-day0

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: Grane oil incubation at 13C-day7

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

characteristic: sampling site

text: marine metagenome


text: NTNU

text: public

characteristic: depth

text: Grane oil incubation at 13C-day14

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

text: marine metagenome

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: Grane oil incubation at 13C-day21

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: title


text: NTNU

text: public

characteristic: depth

text: Grane oil incubation at 13C-day30

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

characteristic: sampling site

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: Grane oil incubation at 13C-day64

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: temperature