text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Max Planck Institute for Biology of Ageing

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Fresh tissue was minced to small pieces (400-500 mg liver) washed in PBS and mitochondrial DNA was purified as described in the nucleic acid extraction protocol. First, fresh tissue was minced to small pieces (~100 mg heart, 400-500 mg liver) washed in PBS and homogenized into 10 ml of mitobuffer (320 mM sucrose, 20 ml Tris-HCl, 1 mM EGTA, 0.2% BSA, pH 7.2) with a glass homogenizer. Heart tissue was first homogenized with loose Teflon pestle by hand with 10 strokes. Then, both liver and heart were homogenized with a tight Teflon pestle with 5 (liver) or 10 strokes (heart) at 200 rpm. Next, homogenates were spun 10 min at 800 g at 4°C to pellet the cell debris, followed by a 10 min spin at 8 500 g 4°C to pellet the mitochondria. The mitochondria pellet was resuspended in 600 µl of Mito-DNase buffer (300 mM sucrose, 10 mM MgCl2, 20 mM Tris HCl, pH 7.5, 0.15% BSA, 0.03 mg/ml DNase I type IV, 170 ng/µl RNase A) and the liver mitochondria were further divided into 600 µl aliquots each containing ~100 mg of starting material. The suspensions were incubated at 37°C for 1 hr to digest the nuclear DNA and RNA. Then, mitochondria were repelleted at 13 000 g, for 15 min at 4°C and washed twice with 500 µl of mitobuffer (320 mM sucrose, 20 ml Tris-HCl, 1 mM EGTA, 0.2% BSA, pH 7.2). Next, the samples were frozen in N2(l) and stored in -80°C. Later the same day, the mitochondrial pellets were resuspended into 400 µl lysis buffer (20 mM Tris HCl, 150 mM NaCl, 20 mM EDTA, 1% SDS, pH 8.75, 0.2 mg/ml Proteinase K, 0.2 mg/ml RNase A) and incubated at 56°C overnight. Then, the samples were cooled down to RT and DNA was extracted with chloroform (100 µl of 6M K-acetate, 500 µl chloroform:isoamylalcohol (24:1, Amresco)). 100 µg/200 µg of RNase A was added to each aqueous phase fractions (heart and liver, respectively) and samples were incubated at 37°C for 45 min to digest the remaining RNA. Thereafter, the samples were ethanol precipitated with 15 µg of glycogen (Ambion). The purified DNA pellet was then resuspended to 20-30 µl of 5 mM Tris buffer pH 8.5 (Macherey-Nagel). Prior to sending the samples to Illumina sequencing (Max Planck Genome Center Cologne), the purity of the extracted mtDNA was verified using mtDNA and nuclear DNA specific primers for PCR amplification. The yield from each 100 mg fractions were ~250 ng for heart and ~ 350 ng for liver as quantified with a fluorometric method (Qubit, ThermoFisher). The protocol was modified from a previously described protocol (Kennedy et al 2013 Plos Genetics, PMID 24086148). For details see (dx.doi.org/10.17504/protocols.io.mycc7sw) Isolated mtDNA from the Mutyh dMTS x Ogg1 dMTS livers were sequenced in two separate sets each including controls. First, the quality of the samples was verified with Genomic DNA analysis ScreenTape (Agilent) followed by DNA library preparation. The DNA was fragmented with Covaris to 400 bp (50 ng, 50 µl, 5% duty cycle, intensity 5, 200 cycles per burst, treatment time 55 s). Following DNA fragmentation, the DNA library was prepared with NEBNext Ultra II DNA library prep kit for Illumina (New England Biolabs). The first Mutyh dMTS x Ogg1 dMTS preparation (2305) was pre-purified with AMPureBeads (Beckman Coulter) before the library preparation to remove contaminating small DNA/RNA fragments.

text: normal

text: wild type genotype

text: mitochondria

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: wild type phenotype

text: Mus musculus

text: male

characteristic: strain

characteristic: title


text: Max Planck Institute for Biology of Ageing

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: Protocols: Fresh tissue was minced to small pieces (~100 mg) washed in PBS and mitochondrial DNA was purified as described in the nucleic acid extraction protocol. First, fresh tissue was minced to small pieces (~100 mg heart, 400-500 mg liver) washed in PBS and homogenized into 10 ml of mitobuffer (320 mM sucrose, 20 ml Tris-HCl, 1 mM EGTA, 0.2% BSA, pH 7.2) with a glass homogenizer. Heart tissue was first homogenized with loose Teflon pestle by hand with 10 strokes. Then, both liver and heart were homogenized with a tight Teflon pestle with 5 (liver) or 10 strokes (heart) at 200 rpm. Next, homogenates were spun 10 min at 800 g at 4°C to pellet the cell debris, followed by a 10 min spin at 8 500 g 4°C to pellet the mitochondria. The mitochondria pellet was resuspended in 600 µl of Mito-DNase buffer (300 mM sucrose, 10 mM MgCl2, 20 mM Tris HCl, pH 7.5, 0.15% BSA, 0.03 mg/ml DNase I type IV, 170 ng/µl RNase A) and the liver mitochondria were further divided into 600 µl aliquots each containing ~100 mg of starting material. The suspensions were incubated at 37°C for 1 hr to digest the nuclear DNA and RNA. Then, mitochondria were repelleted at 13 000 g, for 15 min at 4°C and washed twice with 500 µl of mitobuffer (320 mM sucrose, 20 ml Tris-HCl, 1 mM EGTA, 0.2% BSA, pH 7.2). Next, the samples were frozen in N2(l) and stored in -80°C. Later the same day, the mitochondrial pellets were resuspended into 400 µl lysis buffer (20 mM Tris HCl, 150 mM NaCl, 20 mM EDTA, 1% SDS, pH 8.75, 0.2 mg/ml Proteinase K, 0.2 mg/ml RNase A) and incubated at 56°C overnight. Then, the samples were cooled down to RT and DNA was extracted with chloroform (100 µl of 6M K-acetate, 500 µl chloroform:isoamylalcohol (24:1, Amresco)). 100 µg/200 µg of RNase A was added to each aqueous phase fractions (heart and liver, respectively) and samples were incubated at 37°C for 45 min to digest the remaining RNA. Thereafter, the samples were ethanol precipitated with 15 µg of glycogen (Ambion). The purified DNA pellet was then resuspended to 20-30 µl of 5 mM Tris buffer pH 8.5 (Macherey-Nagel). Prior to sending the samples to Illumina sequencing (Max Planck Genome Center Cologne), the purity of the extracted mtDNA was verified using mtDNA and nuclear DNA specific primers for PCR amplification. The yield from each 100 mg fractions were ~250 ng for heart and ~ 350 ng for liver as quantified with a fluorometric method (Qubit, ThermoFisher). The protocol was modified from a previously described protocol (Kennedy et al 2013 Plos Genetics, PMID 24086148). For details see (dx.doi.org/10.17504/protocols.io.mycc7sw) Isolated mtDNA from the hearts were sequenced in two separate sets each including controls. First, the quality of the samples was verified with Genomic DNA analysis ScreenTape (Agilent) followed by DNA library preparation. The DNA was fragmented with Covaris to 400 bp (50 ng, 50 µl, 5% duty cycle, intensity 5, 200 cycles per burst, treatment time 55 s). Samples with 2269 in their name were fragmented to 350 bp: 50 µl vol, 5 % duty cycle, intensity 5, 200 cycles per burst and treatment time 53 s. Following DNA fragmentation, the DNA library was prepared with NEBNext Ultra II DNA library prep kit for Illumina (New England Biolabs).

text: normal

text: Sod2 +/loxp; Ckmm cre -; Ogg1 dMTS/dMTS

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: Ogg1 loss of mitochondrial translocation sequence mutant

text: Mus musculus

text: female


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: normal

text: Sod2 +/loxp; Ckmm cre -; Ogg1 dMTS/dMTS

text: mitochondria

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male


text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: Sod2 +/loxp; Ckmm cre +; Ogg1 dMTS/dMTS

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: normal

text: Sod2 loxp/loxp; Ckmm cre -; Ogg1 dMTS +/+

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: Ckmm driven knockout of Sod2

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: normal

text: Sod2 loxp/loxp; Ckmm cre -; Ogg1 dMTS/dMTS

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: Ckmm driven knockout of Sod2; Ogg1 loss of mitochondrial translocation sequence mutant

text: Mus musculus

text: male


text: public

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: normal

text: Sod2 loxp/loxp; Ckmm cre +; Ogg1 dMTS/dMTS

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: normal

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

text: Mus musculus

text: heart

text: wild type phenotype

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: mitochondria

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: wild type phenotype

text: Mus musculus

text: male


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Protocols: Heart tissue was rinsed in PBS to remove excess blood and snap-frozen in liquid nitrogen directly after dissection. RNA was extracted from snap-frozen heart tissue with TRIzol (Ambion) following manufacturer's recommendations with an overnight isopropanol precipitation at -20°C. The quality of RNA was verified by resolving it on a formaldehyde-agarose gel prior to library preparation rRNAs were depleted with RiboZero rRNA Removal Kit (Human/Mouse/Rat) (Epicentre) following manufacturer's recommendations with an input of 1 µg total RNA. Next, the RNA library was prepared with NEBNext Ultra Directional RNA Kit (New England Biolabs) following manufacturer's recommendations

text: normal

text: Sod2 loxp/loxp; Ckmm cre -

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: wild type phenotype

text: Mus musculus

text: male

characteristic: strain

characteristic: title


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Sod2 loxp/loxp; Ckmm cre -

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: normal

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: normal

text: mitochondria

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Sod2 loxp/loxp; Ckmm cre +

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: Ckmm driven knockout of Sod2

text: Mus musculus

text: male

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: normal

text: Sod2 loxp/loxp; Ckmm cre +

text: mitochondria

text: Mus musculus

text: Mus musculus

text: heart

text: Ckmm driven knockout of Sod2

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: normal

characteristic: genotype

text: mitochondria

characteristic: intracellular fraction

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: mitochondria

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS / Univ. Lyon 1

characteristic: INSDC center name

text: public

tag: Namespace:CNRS / Univ. Lyon 1

text: Silene latifolia

text: Silene latifolia

text: female

text: seedling

characteristic: tissue type

characteristic: title


text: CNRS / Univ. Lyon 1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Silene latifolia

text: Silene latifolia

text: male

characteristic: sex

text: seedling


text: CNRS / Univ. Lyon 1

text: public

text: bladder campion

characteristic: common name

text: Silene vulgaris

text: Silene vulgaris

text: hermaphrodite

text: seedling


text: Life Sciences Research Unit

text: public

tag: Namespace:Life Sciences Research Unit

text: Signal Transduction Laboratory, University of Luxembourg

characteristic: cell type

text: human

text: RNA of PH5CH8-146b induced with 1 μg/mL of Dox, first sample

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: Life Sciences Research Unit

text: public

text: human

text: RNA of PH5CH8-146b induced with 1 μg/mL of Dox, second sample

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: Life Sciences Research Unit

text: public

text: human

text: RNA of PH5CH8-146b induced with 1 μg/mL of Dox, third sample

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Life Sciences Research Unit

text: public

text: human

text: RNA of PH5CH8-146b control, first sample

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Life Sciences Research Unit

text: public

text: human

text: RNA of PH5CH8-146b control, second sample

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: Life Sciences Research Unit

text: public

text: human

text: RNA of PH5CH8-146b control, third sample

text: Homo sapiens

text: Homo sapiens


text: INRA (INRA Rennes)

characteristic: INSDC center name

text: public

tag: Namespace:INRA (INRA Rennes)

text: 18S, 1 dai, Infested Plant, soil replicate A, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Infested Plant, soil replicate B, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Infested Plant, soil replicate C, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Infested Plant, soil replicate A, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Infested Plant, soil replicate B, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Infested Plant, soil replicate C, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Healthy Plant, soil replicate A, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Healthy Plant, soil replicate B, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Healthy Plant, soil replicate C, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Healthy Plant, soil replicate A, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Healthy Plant, soil replicate B, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 1 dai, Healthy Plant, soil replicate C, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Infested Plant, soil replicate A, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Infested Plant, soil replicate B, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Infested Plant, soil replicate C, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Infested Plant, soil replicate A, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Infested Plant, soil replicate B, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Infested Plant, soil replicate C, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Healthy Plant, soil replicate A, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Healthy Plant, soil replicate B, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Healthy Plant, soil replicate C, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Healthy Plant, soil replicate A, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Healthy Plant, soil replicate B, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 14 dai, Healthy Plant, soil replicate C, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Infested Plant, soil replicate A, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Infested Plant, soil replicate B, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Infested Plant, soil replicate C, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Infested Plant, soil replicate A, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Infested Plant, soil replicate B, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Infested Plant, soil replicate C, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Healthy Plant, soil replicate A, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Healthy Plant, soil replicate B, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Healthy Plant, soil replicate C, High Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Healthy Plant, soil replicate A, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Healthy Plant, soil replicate B, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, 42 dai, Healthy Plant, soil replicate C, Low Soil Microbial Diversity

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: rhizosphere metagenome

text: rhizosphere metagenome


text: public

tag: Namespace:1Departments of Pediatric Oncology and Hematology/Pediatrics, University Medical Center Groningen, University of Groningen.

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

text: TP53 variant subgroup not available

characteristic: clinical information

text: human

text: Protocols: Tumor tissue was obtained from N=49 untreated primary medulloblastomas at diagnosis from three Dutch university medical centers (University Medical Center Groningen, Radboud University Medical Center Nijmegen, and VU University Medical Center Amsterdam) by surgical resection. Immediately following surgical resection, tissue samples were snap frozen in liquid nitrogen and stored at -80°C until further processing. Tumor material was histologically evaluated by an experienced neuropathologist and examined for tumor content. Samples were excluded from analysis when tumor content was below 70%. Informed consent and local Medical Ethical Committee approval was granted for use of the patient material. The IARC TP53 database version R18 was consulted for the molecular interpretation of TP53 variants (www.p53.iarc.fr). Total DNA was isolated using the Qiagen Allprep DNA/RNA/Protein mini kit (Qiagen) following the manufacturer’s protocol. DNA concentration was determined using the QuBit fluorometric quantitation assay (Thermo Fisher). The CAP-compliant clinically validated TruSight Tumor 15 assay kit was performed as per supplier's instruction with 10 ng DNA input.

text: medulloblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: cerebellum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: not available


text: 1Departments of Pediatric Oncology and Hematology/Pediatrics, University Medical Center Groningen, University of Groningen.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: year

text: ArrayExpress

text: TP53 variant subgroup shh

text: human

text: medulloblastoma

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: neoplasm

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: TP53 variant subgroup 4

text: human

characteristic: common name

characteristic: description

text: medulloblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cerebellum

text: neoplasm

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

text: TP53 variant subgroup 3

text: human

text: medulloblastoma

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: neoplasm

text: Homo sapiens

text: male


text: public

text: ArrayExpress

characteristic: broker name

text: TP53 variant subgroup 4

characteristic: clinical information

text: human

text: medulloblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: cerebellum

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: TP53 variant subgroup 3

text: human

text: medulloblastoma

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: neoplasm

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: TP53 variant subgroup shh

text: human

characteristic: common name

characteristic: description

text: medulloblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cerebellum

text: neoplasm

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: TP53 variant subgroup not available

text: human

text: medulloblastoma

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: neoplasm

text: Homo sapiens

text: male

characteristic: sex


text: public

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

text: TP53 variant subgroup shh

characteristic: clinical information

text: human

text: medulloblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: cerebellum

characteristic: organism part

text: neoplasm

text: Homo sapiens

text: male


text: Ewha Womans University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Ewha Womans University

text: ArrayExpress

text: baker's yeast

text: Protocols: For the time course experiments, the indicated strains were grown in 450ml of SC-raffinose to mid-log phase (OD600 ~0.6) at 22℃. 50ml of cells were collected by centrifugation (raffinose 0). The remaining cells were also recovered by centrifugation, resuspended in SC media lacking any carbon source, and then transferred to media containing the indicated carbon sources. 50ml of cells were collected by centrifugation at the indicated time points. Total RNAs were isolated with hot acidic phenol/chloroform (1:1) (Sigma). Sequencing libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit (Illumina) after ribosomal RNA was depleted using the Ribo-Zero yeast kit (Epicenter), as recommended by manufacturers.

characteristic: genotype

text: galactose

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Ewha Womans University

text: public

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

characteristic: common name

characteristic: description

text: glucose

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ewha Womans University

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: raffinose

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Ewha Womans University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: galactose

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Ewha Womans University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: glucose

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Ewha Womans University

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

characteristic: genotype

text: raffinose

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Institute of Parasitology, Biology Centre, ASCR

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: oceanic pelagic zone

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: CCAGCASCYGCGGTAATTCC, ACTTTCGTTCTTGATYRA

characteristic: pcr primers

text: uncultured eukaryote

text: 0.8 ?m

characteristic: size fraction lower threshold

text: 20 ?m

characteristic: size fraction upper threshold

characteristic: target gene

characteristic: target subfragment

text: arctic marine plankton


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Parasitology, Biology Centre, ASCR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine biome

text: oceanic pelagic zone

text: water

text: Yes

text: Arctic Ocean

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: 0.8 ?m

text: 20 ?m

text: arctic marine plankton

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: marine biome

characteristic: environment (biome)

text: oceanic pelagic zone

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: GCAAGTCTGGTGCCA, GACTACGACGGTATCTRATCRTCTTCG

text: uncultured eukaryote

text: 5 ?m

text: arctic marine plankton


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome

text: oceanic pelagic zone

text: water

text: Yes

text: Arctic Ocean

text: uncultured eukaryote

text: GCAAGTCTGGTGCCA, ACGGTATCTRATCRTCTTCG

characteristic: pcr primers

text: uncultured eukaryote

text: 5 ?m

characteristic: size fraction lower threshold

characteristic: target gene

characteristic: target subfragment

text: arctic marine plankton


characteristic: ENA-CHECKLIST

text: GUH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: terrestrial biome

characteristic: environment (biome)

text: organic feature

text: organic material

text: Switzerland

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: Cardiobacterium

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: constant 22°C

characteristic: air temperature regimen

text: wild

characteristic: biological status

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: wild-type

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of Col-0 wild tpye control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: wild

characteristic: biological status

characteristic: collection date

text: thale cress

text: 120000000 bps

text: wild-type

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: title


text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

characteristic: chemical mutagen

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: point mutation

characteristic: genetic modification

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of Col-0 trb1-1 mutant


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutant

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutant

text: trb1-1 point

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of trb1-1 mutants

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: trb1-1 point mutation

characteristic: genetic modification

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of trb1-1 mutants


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutant

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutation

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of trb3.1 mutant

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: point mutation

characteristic: genetic modification

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of trb3-1 mutants


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutant

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutations

text: trb1-1; trb3-1

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of trb1-trb3 double mutants

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: point mutations

characteristic: genetic modification

text: trb1-1 trb3-1

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of trb1-1 trb3-1 mutants


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutant

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutants

text: trb1-1 trb3-1

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: X-ray

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: deletion mutant

characteristic: genetic modification

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of lhp1-1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutant

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutation

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of lhp1-3

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: point mutations

characteristic: genetic modification

text: trb1-1 lhp1-3

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of trb1-1 lhp1-3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutatn

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutations

text: trb1-1 lhp1-3

text: Germany

text: growth chamber

text: Seeldings grwon on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of trb1-1 lhp1-3

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: point mutations

characteristic: genetic modification

text: trb3-1 lhp1-3

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grwon on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession

text: RNA-seq transcriptome of trb3-1 lhp1-3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: mutant

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutations

text: trb1-1 trb3-1 lhp1-3

text: Germany

text: growth chamber

text: Seeldings grwon on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of trb1-1 trb3-1 lhp1-3 mutants

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: constant 22°C

text: mutant

text: ethyl methanesulfonate

text: thale cress

characteristic: common name

text: 120000000 bps

characteristic: estimated size

text: point mutations

characteristic: genetic modification

text: trb1-1 trb3-1 lhp1-3

characteristic: genotype

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: Seeldings grown on GM medium

characteristic: isolation and growth condition

text: long day (16h light/8h dark)

characteristic: light regimen

text: Arabidopsis thaliana

text: thale cress

characteristic: organism common name

text: seedling

characteristic: plant developmental stage

text: in vitro culture GM medium

characteristic: plant growth medium

text: whole seedling

characteristic: plant structure

text: 10 days old

characteristic: sampled age

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: Accession


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: constant 22°C

characteristic: air temperature regimen

text: wild

characteristic: biological status

text: ethyl methanesulfonate

characteristic: chemical mutagen

characteristic: collection date

text: thale cress

text: 120000000 bps

text: point mutations

text: trb1-1 trb3-1 lhp1-3

text: Germany

text: growth chamber

text: Seeldings grown on GM medium

text: long day (16h light/8h dark)

text: Arabidopsis thaliana

characteristic: organism

text: thale cress

text: seedling

text: in vitro culture GM medium

text: whole seedling

text: 10 days old

text: Arabidopsis thaliana

text: Accession

characteristic: subspecific genetic lineage rank

text: RNA-seq transcriptome of trb1-1 trb3-1 lhp1-1

characteristic: title


characteristic: ENA-CHECKLIST

text: CNRS / Univ. Lyon 1

text: public

text: Silene latifolia

text: Silene latifolia

text: female

characteristic: sex

text: flower buds

characteristic: tissue type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS / Univ. Lyon 1

text: public

text: Silene latifolia

text: Silene latifolia

text: male

text: flower buds


characteristic: DNA extraction plate

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF BRITISH COLUMBIA

text: ATTGCCTTGATT

characteristic: barcodesequence

characteristic: conductivity

characteristic: description

text: artificial seagrass unit sample

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: asu

text: uncultured eukaryote

characteristic: par

text: E572F: CYGCGGTAATTCCAGCTC, E1009R: CRAAGAYGATYAGATACCRT

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

unit: practical salinity unit

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TTATCCAGTCCT

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

characteristic: description

text: artificial seagrass unit sample

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: asu

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

text: public

text: TTGCACCGTCGA

text: artificial seagrass unit sample

text: coastal sea water

text: sea grass bed

text: biofilm material

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: asu

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TCTACATACATA

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

characteristic: description

text: artificial seagrass unit sample

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: asu

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

text: public

text: CTCCGAACAACA

text: artificial seagrass unit sample

text: coastal sea water

text: sea grass bed

text: biofilm material

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: asu

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TGGCGCACGGAC

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

characteristic: description

text: artificial seagrass unit sample

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: asu

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

text: public

text: ACAGTTGTACGC

text: artificial seagrass unit sample

text: coastal sea water

text: sea grass bed

text: biofilm material

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: asu

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


asucpwedge

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: asucpwedge

characteristic: Submitter Id

text: ATAGTTAGGGCT

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

characteristic: description

text: artificial seagrass unit sample

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: biofilm material

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: asu

text: uncultured eukaryote

characteristic: organism

text: asu_ edge

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes


asucpwinner

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

text: public

text: asucpwinner

text: CAGTCTAGTACG

text: artificial seagrass unit sample

text: coastal sea water

text: sea grass bed

text: biofilm material

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: asu

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: asu_ inner

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


waterciba

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: waterciba

characteristic: Submitter Id

text: ATCCATGAGCGT

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watercibb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watercibb

text: GGCCCTGTGGGC

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


watercoba

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watercoba

characteristic: Submitter Id

text: GCAGAGAGGCTA

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watercobb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watercobb

text: GCTAGACACTAC

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


watercobc

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watercobc

characteristic: Submitter Id

text: CGTGTTATGTGG

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watercosa

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watercosa

text: CAACTTAATGTT

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


watercosb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watercosb

characteristic: Submitter Id

text: GAGTCCGTTGCT

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watercosc

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watercosc

text: AAGTAGGAAGGA

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: run id

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TCATCTTGATTG

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene


characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

text: public

text: AACGATCATAGA

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


watercspa

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watercspa

characteristic: Submitter Id

text: CGTTCGCTAGCC

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watercspb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watercspb

text: GTCCTCGCGACT

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: yes


watercspc

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watercspc

characteristic: Submitter Id

text: GTCAGTATGGCT

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: yes

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watercwba

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watercwba

text: TAACCACCAACG

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: choked

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no


watercwbb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watercwbb

characteristic: Submitter Id

text: CGATATCAGTAG

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: choked

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: no

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watergsea

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watergsea

text: AATCTCTATAAC

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: hiss

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: goose

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no


watergseb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watergseb

characteristic: Submitter Id

text: TCGTAGTAATGG

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: moo

text: uncultured eukaryote

characteristic: organism

text: goose

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: no

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watergsec

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watergsec

text: GAGGCGCCATAG

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: meow

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: goose

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no


watergswa

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watergswa

characteristic: Submitter Id

text: TAGCGACCTCAC

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: a

text: uncultured eukaryote

characteristic: organism

text: goose

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: no

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watergswb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watergswb

text: GTCGGGCCGGTA

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: c

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: pressure

text: goose

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no


watergswc

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: watergswc

characteristic: Submitter Id

text: AATAGTCGTGAC

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: e

text: uncultured eukaryote

characteristic: organism

text: goose

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: no

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watermcna

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watermcna

text: TGCCTGCTCGAC

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: mcmullin

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no


watermcnb

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watermcnb

characteristic: Submitter Id

text: TCTTACCCATAA

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: uncultured eukaryote

characteristic: organism

text: mcmullin

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: no

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watermcnc

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watermcnc

text: CGTTTATCCGTT

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: f

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: mcmullin

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no


watermcnd

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: watermcnd

characteristic: Submitter Id

text: TAGGTAACCGAT

characteristic: barcodesequence

characteristic: collection date

characteristic: conductivity

text: coastal water sample

characteristic: description

characteristic: dissolved oxygen

text: coastal sea water

characteristic: environment (biome)

text: sea grass bed

characteristic: environment (feature)

text: coastal sea water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Canada

text: water

text: d

text: uncultured eukaryote

characteristic: organism

text: mcmullin

characteristic: run id

text: uncultured eukaryote

text: Illumina MiSeq

text: no

characteristic: target gene

characteristic: target subfragment

characteristic: temperature

characteristic: turbidity


watermcne

characteristic: DNA extraction plate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BRITISH COLUMBIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: watermcne

text: GTGGCGCATGGA

text: coastal water sample

text: coastal sea water

text: sea grass bed

text: coastal sea water

text: Yes

characteristic: envo

characteristic: further details

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: water

text: b

text: uncultured eukaryote

characteristic: par

characteristic: pcr primers

characteristic: phaeo

characteristic: pressure

text: mcmullin

characteristic: region

characteristic: salinity

characteristic: sample method

text: uncultured eukaryote

text: Illumina MiSeq

characteristic: seq meth

characteristic: site

text: no