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text: PNNL

text: FALSE

characteristic: pid

text: TRUE

characteristic: public

text: Cauc

text: HM-MJ

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: LC

text: human fecal sample

characteristic: description

text: LC

characteristic: diet

text: TRUE

characteristic: elevation

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: Not hispanic or Latino

text: USA:CA

text: TRUE

text: human

text: Homo sapiens

text: human gut metagenome

text: PNNL

text: FALSE

text: TRUE

text: Cauc

text: HM-MJ

text: stool

text: human gut metagenome

text: female


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: HC

text: human fecal sample

text: HC

text: TRUE

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Hispanic or Latino

text: USA:CA

characteristic: geo loc name

text: TRUE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: PNNL

text: FALSE

characteristic: pid

text: TRUE

characteristic: public

text: Decline/Unk

text: HM-MJ

text: stool

characteristic: sample type

text: human gut metagenome

text: female

characteristic: sex

characteristic: title


text: ZFS:0000035 - Larval:Protruding-mouth

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-SPECIES

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio

characteristic: subject id


text: ZFS:0000033-ZFS:0000034 - Pharyngula:High-pec - Long-pec

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio


text: CHINESE ACADEMIC OF SCIENCE

text: public

tag: Namespace:CHINESE ACADEMIC OF SCIENCE

characteristic: collection date

text: prokaryote

characteristic: environment (biome)

text: forest soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: prokaryotic community

characteristic: project name

text: soil metagenome

text: Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: prokaryotic community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HHMI-UNC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: woodland

text: organic material

text: detritus

text: USA

text: metagenome

text: Sarracenia minor

text: plant-associated

characteristic: plant-associated environmental package

text: pitcher plant 16s profiling

text: Sarracenia minor

text: Illumina

text: hooded sample

characteristic: title


text: UNIVERSITY OF MELBOURNE

text: public

tag: Namespace:UNIVERSITY OF MELBOURNE

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

characteristic: isolate

text: Blood Culture

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MELBOURNE

text: public

text: Australia

text: Human

text: Skin

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The James Hutton Institute

text: public

tag: Namespace:The James Hutton Institute

text: Isolate associated with barley field trial

characteristic: description

text: bovine slurry

characteristic: environment (biome)

text: fertiliser

characteristic: environment (feature)

text: animal manure

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: Escherichia coli

text: plant-associated

text: Low Pilmore isolates

characteristic: project name

text: Escherichia coli

text: Illumina paried-end

characteristic: sequencing method

text: E. coli isolate


text: The James Hutton Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: compost

text: fertiliser

text: agricultural environmental material

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: Escherichia coli

text: plant-associated

characteristic: plant-associated environmental package

text: Low Pilmore isolates

text: Escherichia coli

text: Illumina paried-end

text: E. coli isolate

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The James Hutton Institute

text: public

text: E. coli associated with barley field trial

characteristic: description

text: bovine slurry

characteristic: environment (biome)

text: fertiliser

characteristic: environment (feature)

text: animal manure

text: United Kingdom

text: mimarks-survey

text: Escherichia coli

characteristic: organism

text: plant-associated

text: environmental E. coli

text: Escherichia coli

text: Illumina paried-end

text: E. coli isolate


text: HHMI-UNC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: woodland

text: organic material

text: detritus

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Sarracenia flava

text: plant-associated

text: pitcher plant 16s profiling

characteristic: project name

text: Sarracenia flava

text: Illumina

characteristic: sequencing method

text: yellow (Sarracenia flava) sample


text: HKUST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Prochlorococcus marinus str. MIT 9313

text: Prochlorococcus marinus str. MIT 9313

characteristic: title


text: Cell Line

characteristic: ArrayExpress-PHENOTYPE

text: Homo Sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Cell Line

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: ZF-SCREENS B.V.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:ZF-SCREENS B.V.

text: E.coli K12 MG1655

characteristic: description

text: Escherichia coli str. K-12 substr. MG1655

characteristic: organism


text: Chryseobacterium gleum

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chryseobacterium gleum

text: Chryseobacterium gleum

text: Chryseobacterium gleum


text: Burkholderia cenocepacia

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia


text: Lactobacillus delbrueckii subsp. bulgaricus

text: SC

text: public

characteristic: title


text: Flavobacterium lindanitolerans

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Flavobacterium lindanitolerans

text: Flavobacterium lindanitolerans

text: Flavobacterium lindanitolerans


text: Clostridium botulinum

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Clostridium botulinum

text: Clostridium botulinum

text: Clostridium botulinum


text: Streptomyces coelicolor A3(2)

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Streptomyces coelicolor A3(2)

text: Streptomyces coelicolor A3(2)

text: Streptomyces coelicolor A3(2)


text: Sphingobacterium daejeonense

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Sphingobacterium daejeonense

text: Sphingobacterium daejeonense

text: Sphingobacterium daejeonense


text: Lactobacillus delbrueckii subsp. lactis

characteristic: External Id

text: SC

text: public

text: Lactobacillus delbrueckii subsp. lactis

text: Lactobacillus delbrueckii subsp. lactis

text: Lactobacillus delbrueckii subsp. lactis


text: Bordetella petrii

text: SC

text: public

text: Bordetella petrii

characteristic: common name

text: Bordetella petrii

text: Bordetella petrii


text: Mobiluncus curtisii

text: SC

text: public

text: Mobiluncus curtisii

text: Mobiluncus curtisii

text: Mobiluncus curtisii


text: Mycobacterium parafortuitum

text: SC

text: public

text: Mycobacterium parafortuitum

text: Mycobacterium parafortuitum

text: Mycobacterium parafortuitum


text: Streptococcus dysgalactiae subsp. dysgalactiae

text: SC

text: public


text: Pasteurella langaaensis

text: SC

text: public

text: Pasteurella langaaensis

text: Pasteurella langaaensis

text: Pasteurella langaaensis


text: Moraxella osloensis

text: SC

text: public

text: Moraxella osloensis

text: Moraxella osloensis

text: Moraxella osloensis


text: [Clostridium] xylanolyticum

text: SC

text: public

text: [Clostridium] xylanolyticum

text: [Clostridium] xylanolyticum

text: [Clostridium] xylanolyticum


text: Pseudomonas andersonii

text: SC

text: public

text: Pseudomonas andersonii

text: Pseudomonas andersonii

text: Pseudomonas andersonii


text: Chryseobacterium haifense

text: SC

text: public

text: Chryseobacterium haifense

text: Chryseobacterium haifense

text: Chryseobacterium haifense


text: Chryseobacterium shigense

text: SC

text: public

text: Chryseobacterium shigense

text: Chryseobacterium shigense

text: Chryseobacterium shigense


text: Clostridium chauvoei

text: SC

text: public

text: Clostridium chauvoei

text: Clostridium chauvoei

text: Clostridium chauvoei


text: Staphylococcus warneri

text: SC

text: public

text: Staphylococcus warneri

text: Staphylococcus warneri

text: Staphylococcus warneri


text: Chryseobacterium anthropi

text: SC

text: public

text: Chryseobacterium anthropi

text: Chryseobacterium anthropi

text: Chryseobacterium anthropi


text: Streptococcus pyogenes

text: SC

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: Brucella neotomae

text: SC

text: public

text: Brucella neotomae

text: Brucella neotomae

text: Brucella neotomae


text: Brucella suis

text: SC

text: public

text: Brucella suis

text: Brucella suis

text: Brucella suis


text: Fusobacterium necrophorum

text: SC

text: public

text: Fusobacterium necrophorum

text: Fusobacterium necrophorum

text: Fusobacterium necrophorum


text: Fusobacterium varium

text: SC

text: public

text: Fusobacterium varium

text: Fusobacterium varium

text: Fusobacterium varium


text: Haemophilus sputorum

text: SC

text: public

text: Haemophilus sputorum

text: Haemophilus sputorum

text: Haemophilus sputorum


text: Legionella pneumophila

text: SC

text: public

text: Legionella pneumophila

text: Legionella pneumophila

text: Legionella pneumophila


text: Haemophilus influenzae-murium

text: SC

text: public

text: Haemophilus influenzae-murium

text: Haemophilus influenzae-murium

text: Haemophilus influenzae-murium


text: Nocardia africana

text: SC

text: public

text: Nocardia africana

text: Nocardia africana

text: Nocardia africana


text: Helicobacter mustelae

text: SC

text: public

text: Helicobacter mustelae

text: Helicobacter mustelae

text: Helicobacter mustelae


text: Campylobacter jejuni

text: SC

text: public

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter jejuni


text: Haemophilus influenzae

text: SC

text: public

text: Haemophilus influenzae

text: Haemophilus influenzae

text: Haemophilus influenzae


text: Streptococcus dysgalactiae

text: SC

text: public

text: Streptococcus dysgalactiae

text: Streptococcus dysgalactiae

text: Streptococcus dysgalactiae


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Salmonella enterica subsp. enterica serovar Enteritidis

text: SC

text: public


text: Rhodococcus hoagii

text: SC

text: public

text: Rhodococcus hoagii

text: Rhodococcus hoagii

text: Rhodococcus hoagii


text: ISTANBUL UNIVERSITY

text: public

tag: Namespace:ISTANBUL UNIVERSITY

text: metagenome

text: metagenome


text: Anopheles gambiae

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: UOM

text: public

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: fibroblast

characteristic: cell type

text: human

text: Protocols: Soft tissue sarcoma cell lines representing the most common histologic subtypes were purchased from the American Type Culture Collection (ATCC, Teddington, Middlesex, UK) Cells were grown in ATCC specified media. Cell lines were authenticated by the Promega Powerplex 21 System and underwent mycoplasma screening (Molecular Biology Core Facility, CRUK Manchester Institute, UK). Cells were plated in 6 well plates and cultured in normoxia for 24 hours. Media was changed before 24 hour exposure to 1% oxygen (Ruskin Invivo2 400 hypoxia workstation, Ruskinn Technology Ltd, Bridgend, UKn). The RNA was extracted using the Phenol- Choroform (TRIZOL) method. The extracted RNA was cleaned up using a Qiagen RNeasy mini kit (cat no 74104). The sample yield was established using a Nanodrop (ThermoFisher Scientific). Samples were run on an Agilant Bioanalyzer to give the RNA integrity (RIN). All 42 samples had a RIN of between 8.6 and 10. TruSeq Stranded mRNA Library Preparation Kit

text: well-differentiated liposarcoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: retroperitoneum

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: epithelial cell

text: human

characteristic: description

text: fibrosarcoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: connective tissue

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: mixed tumour, mesodermal

text: Homo sapiens

text: Homo sapiens

text: uterus

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Schwann cell

text: human

characteristic: common name

text: Neurofibromatosis type 1

text: Homo sapiens

text: Homo sapiens

text: Schwann cell

text: Homo sapiens

text: male


text: UOM

text: public

text: ArrayExpress

characteristic: cell line

text: fibroblast

characteristic: cell type

text: human

text: fibrosarcoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: connective tissue

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: fibroblast

text: human

characteristic: description

text: liposarcoma

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mixed

text: human

text: synovial sarcoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: connective tissue

text: Homo sapiens

text: female


16453 PAO1 BSM replicate1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF VIENNA

text: public

text: 16453 PAO1 BSM replicate1

tag: Namespace:UNIVERSITY OF VIENNA

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Crc-Hfq-RNA interaction in P.aeruginosa

characteristic: title


16454 PAO1 BSM replicate2

text: UNIVERSITY OF VIENNA

text: public

text: 16454 PAO1 BSM replicate2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Crc-Hfq-RNA interaction in P.aeruginosa


16455 PAO1hfq- BSM replicate1

text: UNIVERSITY OF VIENNA

text: public

text: 16455 PAO1hfq- BSM replicate1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Crc-Hfq-RNA interaction in P.aeruginosa


16456 PAO1hfq- BSM replicate2

text: UNIVERSITY OF VIENNA

text: public

text: 16456 PAO1hfq- BSM replicate2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Crc-Hfq-RNA interaction in P.aeruginosa


16457 PAO1dcrc BSM replicate1

text: UNIVERSITY OF VIENNA

text: public

text: 16457 PAO1dcrc BSM replicate1

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Crc-Hfq-RNA interaction in P.aeruginosa


16458 PAO1dcrc BSM replicate2

text: UNIVERSITY OF VIENNA

text: public

text: 16458 PAO1dcrc BSM replicate2

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Crc-Hfq-RNA interaction in P.aeruginosa


text: INSERM UMR 1064

text: public

tag: Namespace:INSERM UMR 1064

text: human

characteristic: common name

characteristic: culture media

text: induced pluripotent stem cells

characteristic: line

text: Homo sapiens

characteristic: passage

characteristic: run

text: Homo sapiens

characteristic: well


text: INSERM UMR 1064

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: RSeT

text: induced naive pluripotent stem cells

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: INSERM UMR 1064

text: public

characteristic: INSDC status

text: human

text: induced naive pluripotent stem cells

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: INSERM UMR 1064

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: fibroblast

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSERM UMR 1064

text: public

text: human

text: Fibro

text: fibroblast

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: INSERM UMR 1064

text: public

text: human

characteristic: common name

characteristic: culture media

text: embryonic stem cells

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: INSERM UMR 1064

text: public

text: human

text: naive embryonic stem cells, generated by Guo et al, 2016

text: HNES

characteristic: line

text: Homo sapiens

characteristic: passage

characteristic: run

text: Homo sapiens