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characteristic: units

text: Missing: Not reported

characteristic: weight

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age unit

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: fecal sample Ni-G7-115-D5

characteristic: description

text: true

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: five day exposure cohort

characteristic: experiment

text: USA:MD

characteristic: geo loc name

text: rat

text: Rattus norvegicus

characteristic: host subject id

text: adult

text: rat gut metagenome

text: Ft Detrick, MD

text: true

text: TRUE

text: stool

characteristic: sample type

text: rat gut metagenome

text: male

text: terminal

text: Definitive metals study

text: mg/kg/day

text: Missing: Not reported

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal sample Ni-G8-116-D0

text: true

characteristic: dose

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: five day exposure cohort

text: USA:MD

text: rat

characteristic: host common name

text: Rattus norvegicus

characteristic: host scientific name

characteristic: host taxid

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: rat gut metagenome

characteristic: organism

text: Ft Detrick, MD

text: true

text: TRUE

characteristic: public

text: stool

text: rat gut metagenome

text: male

characteristic: sex

text: pre-dose

characteristic: timepoint

text: Definitive metals study

characteristic: title

characteristic: treatment

text: mg/kg/day

characteristic: units

text: Missing: Not reported

characteristic: weight

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age unit

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: fecal sample Ni-G8-116-D5

characteristic: description

text: true

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: five day exposure cohort

characteristic: experiment

text: USA:MD

characteristic: geo loc name

text: rat

text: Rattus norvegicus

characteristic: host subject id

text: adult

text: rat gut metagenome

text: Ft Detrick, MD

text: true

text: TRUE

text: stool

characteristic: sample type

text: rat gut metagenome

text: male

text: terminal

text: Definitive metals study

text: mg/kg/day

text: Missing: Not reported

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal sample Ni-G8-117-D0

text: true

characteristic: dose

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: five day exposure cohort

text: USA:MD

text: rat

characteristic: host common name

text: Rattus norvegicus

characteristic: host scientific name

characteristic: host taxid

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: rat gut metagenome

characteristic: organism

text: Ft Detrick, MD

text: true

text: TRUE

characteristic: public

text: stool

text: rat gut metagenome

text: male

characteristic: sex

text: pre-dose

characteristic: timepoint

text: Definitive metals study

characteristic: title

characteristic: treatment

text: mg/kg/day

characteristic: units

text: Missing: Not reported

characteristic: weight

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age unit

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: fecal sample Ni-G8-117-D5

characteristic: description

text: true

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: five day exposure cohort

characteristic: experiment

text: USA:MD

characteristic: geo loc name

text: rat

text: Rattus norvegicus

characteristic: host subject id

text: adult

text: rat gut metagenome

text: Ft Detrick, MD

text: true

text: TRUE

text: stool

characteristic: sample type

text: rat gut metagenome

text: male

text: terminal

text: Definitive metals study

text: mg/kg/day

text: Missing: Not reported

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal sample Ni-G8-118-D0

text: true

characteristic: dose

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: five day exposure cohort

text: USA:MD

text: rat

characteristic: host common name

text: Rattus norvegicus

characteristic: host scientific name

characteristic: host taxid

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: rat gut metagenome

characteristic: organism

text: Ft Detrick, MD

text: true

text: TRUE

characteristic: public

text: stool

text: rat gut metagenome

text: male

characteristic: sex

text: pre-dose

characteristic: timepoint

text: Definitive metals study

characteristic: title

characteristic: treatment

text: mg/kg/day

characteristic: units

text: Missing: Not reported

characteristic: weight

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age unit

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: fecal sample Ni-G8-118-D5

characteristic: description

text: true

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: five day exposure cohort

characteristic: experiment

text: USA:MD

characteristic: geo loc name

text: rat

text: Rattus norvegicus

characteristic: host subject id

text: adult

text: rat gut metagenome

text: Ft Detrick, MD

text: true

text: TRUE

text: stool

characteristic: sample type

text: rat gut metagenome

text: male

text: terminal

text: Definitive metals study

text: mg/kg/day

text: Missing: Not reported

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal sample Ni-G8-119-D0

text: true

characteristic: dose

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: five day exposure cohort

text: USA:MD

text: rat

characteristic: host common name

text: Rattus norvegicus

characteristic: host scientific name

characteristic: host taxid

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: rat gut metagenome

characteristic: organism

text: Ft Detrick, MD

text: true

text: TRUE

characteristic: public

text: stool

text: rat gut metagenome

text: male

characteristic: sex

text: pre-dose

characteristic: timepoint

text: Definitive metals study

characteristic: title

characteristic: treatment

text: mg/kg/day

characteristic: units

text: Missing: Not reported

characteristic: weight

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age unit

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: fecal sample Ni-G8-119-D5

characteristic: description

text: true

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: five day exposure cohort

characteristic: experiment

text: USA:MD

characteristic: geo loc name

text: rat

text: Rattus norvegicus

characteristic: host subject id

text: adult

text: rat gut metagenome

text: Ft Detrick, MD

text: true

text: TRUE

text: stool

characteristic: sample type

text: rat gut metagenome

text: male

text: terminal

text: Definitive metals study

text: mg/kg/day

text: Missing: Not reported

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: months

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: fecal sample Ni-G8-120-D0

text: true

characteristic: dose

characteristic: elevation

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: five day exposure cohort

text: USA:MD

text: rat

characteristic: host common name

text: Rattus norvegicus

characteristic: host scientific name

characteristic: host taxid

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: rat gut metagenome

characteristic: organism

text: Ft Detrick, MD

text: true

text: TRUE

characteristic: public

text: stool

text: rat gut metagenome

text: male

characteristic: sex

text: pre-dose

characteristic: timepoint

text: Definitive metals study

characteristic: title

characteristic: treatment

text: mg/kg/day

characteristic: units

text: Missing: Not reported

characteristic: weight

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age unit

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: fecal sample Ni-G8-120-D5

characteristic: description

text: true

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: five day exposure cohort

characteristic: experiment

text: USA:MD

characteristic: geo loc name

text: rat

text: Rattus norvegicus

characteristic: host subject id

text: adult

text: rat gut metagenome

text: Ft Detrick, MD

text: true

text: TRUE

text: stool

characteristic: sample type

text: rat gut metagenome

text: male

text: terminal

text: Definitive metals study

text: mg/kg/day

text: Missing: Not reported

text: grams


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: months

text: Ni.HoodSwab

text: urban biome

text: research facility

text: misc environment

text: anthropogenic environmental material

text: control hood

text: USA:MD

text: Ni.HoodSwab

text: adult

characteristic: life stage

text: metagenome

characteristic: organism

text: TRUE

characteristic: public

text: control hood swab

text: metagenome

text: Definitive metals study

characteristic: title

text: Missing: Not reported

characteristic: weight

text: grams


text: Tasmanian devil

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Tasmanian devil

characteristic: common name

text: Sarcophilus harrisii

text: Sarcophilus harrisii

characteristic: subject id


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plant Genome and Systems Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Plant Genome and Systems Biology

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: quinoa

characteristic: cultivar

text: Protocols: Bladders were scratched off from young leaves having mostly intact, turgescent bladders with a small spatula. Before scratching off the bladders, the leaves were frozen in liquid nitrogen. For each sample bladders of six young leaves from two plants were collected. RNA from salt bladders was isolated using the NucleoSpin RNA Plant Kit (Macherey&Nagel) according to the manual with some exceptions. Bladders were scratched off from young leaves having mostly intact, turgescent bladders with a small spatula. Before scratching off the bladders, the leaves were frozen in liquid nitrogen. For each sample bladders of six young leaves from two plants were collected in 500µl lysis buffer RA1 (containing 1:100 TCEP) and mixed strongly for 20s to lyse the cells. The lysate was transferred to the NucleoSpin Filters and centrifuged for 1min at 11000g. The filtrate was mixed with 500µl ethanol (70%) and transferred in two steps to the NucleoSpin RNA plant Column and centrifuged for 1min at 11000g. The washing steps were performed following the manufacturer's instructions. RNA was eluted in 33µl RNAse free water that was incubated on the membrane two times for 1min. Library preparation and RNAseq were carried out as described in the Illumina TruSeq Stranded mRNA Sample Preparation Guide, the Illumina HiSeq 1000 System User Guide (Illumina, Inc., San Diego, CA, USA), and the KAPA Library Quantification Kit - Illumina/ABI Prism User Guide (Kapa Biosystems, Inc., Woburn, MA, USA).

characteristic: description

text: Chenopodium quinoa

text: Chenopodium quinoa

text: salt gland

characteristic: organism part

characteristic: replicate

text: salt gland

characteristic: sampling site

text: Chenopodium quinoa


text: Plant Genome and Systems Biology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: quinoa

text: Protocols: Leaves from 9 week old plants were of the same age as the one from which the bladders were removed. For the leaves without bladders, the salt bladders were removed before RNA extraction with a small spatula. RNA from leaves as well as leaves without bladders was isolated using the E.Z.N.A plant RNA kit (OMEGA bio-tek) following the manufacturer's instructions. Leaves were of the same age as the one from which the bladders were removed. For the leaves without bladders, the salt bladders were removed before RNA extraction with a small spatula. Library preparation and RNAseq were carried out as described in the Illumina TruSeq Stranded mRNA Sample Preparation Guide, the Illumina HiSeq 1000 System User Guide (Illumina, Inc., San Diego, CA, USA), and the KAPA Library Quantification Kit - Illumina/ABI Prism User Guide (Kapa Biosystems, Inc., Woburn, MA, USA).

text: Chenopodium quinoa

characteristic: organism

text: Chenopodium quinoa

text: leaf

text: whole leaf

text: Chenopodium quinoa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Plant Genome and Systems Biology

text: public

characteristic: Submitter Id

text: ArrayExpress

text: quinoa

characteristic: common name

text: Chenopodium quinoa

text: Chenopodium quinoa

text: leaf

text: leaf without salt glands

text: Chenopodium quinoa


text: Normal

characteristic: ArrayExpress-Phenotype

text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Homo sapiens


TUM

text: CEBITEC

text: public

text: TUM

characteristic: collection date

text: Harvest of the oleaginous microalgae Scenedesmus obtusiusculus from optimized salt water culture by flocculation

characteristic: description

text: water

characteristic: environment (biome)

text: water

characteristic: environment (feature)

text: Scenedesmus obtusiusculus metagenome

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: TUM microalgae

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


text: mixed

text: whole organism

text: hermaphrodite

characteristic: ArrayExpress-SEX

text: Caenorhabditis elegans

characteristic: ArrayExpress-SPECIES

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Caenorhabditis elegans

characteristic: common name

text: Hermaphrodite

characteristic: gender

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

characteristic: subject id

characteristic: title


characteristic: External Id

text: UNIVERSITY OF VIENNA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF VIENNA

text: Enrichment of bacteria dehalogenating TCB from marine sediments.

characteristic: description

text: metagenome

text: metagenome

text: Marine-TCB-dehalogenating-enrichments


text: UCSDMI

text: public

text: years

characteristic: age unit

characteristic: anonymized name

text: sample 17A1.Empty

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: true

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: TRUE

characteristic: public

text: empty control

characteristic: sample type

text: metagenome

text: Time 6

characteristic: timepoint

text: Hygiene products and microbiome