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characteristic: geo loc name

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: adult

characteristic: life stage

characteristic: mouse number

text: mouse gut metagenome

characteristic: organism

text: Bar-Ilan University

text: FALSE

characteristic: proteinuria

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: title

text: TPC treatment in lupus mice model

text: TPC

characteristic: treatment

characteristic: treatment day

text: TPC

characteristic: treatment group

text: not provided

characteristic: weight

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: mouse gut

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: stool from mouse 8, NZB/W strain recived TPC treatment, day 0

text: Israel:Safed

text: mouse

text: Mus musculus

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: Bar-Ilan University

text: FALSE

text: stool

text: mouse gut metagenome

text: female

text: TPC treatment in lupus mice model

text: TPC

text: TPC

text: not provided

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse gut

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: stool from mouse 8, NZB/W strain recived TPC treatment, day 14

text: Israel:Safed

characteristic: geo loc name

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: adult

characteristic: life stage

characteristic: mouse number

text: mouse gut metagenome

characteristic: organism

text: Bar-Ilan University

text: FALSE

characteristic: proteinuria

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: title

text: TPC treatment in lupus mice model

text: TPC

characteristic: treatment

characteristic: treatment day

text: TPC

characteristic: treatment group

text: not provided

characteristic: weight

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: mouse gut

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: stool from mouse 8, NZB/W strain recived TPC treatment, day 21

text: Israel:Safed

text: mouse

text: Mus musculus

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: Bar-Ilan University

text: FALSE

text: stool

text: mouse gut metagenome

text: female

text: TPC treatment in lupus mice model

text: TPC

text: TPC

text: not provided

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse gut

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: stool from mouse 8, NZB/W strain recived TPC treatment, day 28

text: Israel:Safed

characteristic: geo loc name

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: adult

characteristic: life stage

characteristic: mouse number

text: mouse gut metagenome

characteristic: organism

text: Bar-Ilan University

text: FALSE

characteristic: proteinuria

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: title

text: TPC treatment in lupus mice model

text: TPC

characteristic: treatment

characteristic: treatment day

text: TPC

characteristic: treatment group

text: not provided

characteristic: weight

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: mouse gut

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: stool from mouse 8, NZB/W strain recived TPC treatment, day 35

text: Israel:Safed

text: mouse

text: Mus musculus

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: Bar-Ilan University

text: FALSE

text: stool

text: mouse gut metagenome

text: female

text: TPC treatment in lupus mice model

text: TPC

text: TPC

text: not provided

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse gut

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: stool from mouse 8, NZB/W strain recived TPC treatment, day 7

text: Israel:Safed

characteristic: geo loc name

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: adult

characteristic: life stage

characteristic: mouse number

text: mouse gut metagenome

characteristic: organism

text: Bar-Ilan University

text: FALSE

characteristic: proteinuria

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: TPC treatment in lupus mice model

characteristic: title

text: TPC

characteristic: treatment

characteristic: treatment day

text: TPC

characteristic: treatment group

text: not provided

characteristic: weight

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: mouse gut

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: stool from mouse 9, NZB/W strain recived TPC treatment, day 0

text: Israel:Safed

text: mouse

text: Mus musculus

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: Bar-Ilan University

text: FALSE

text: stool

text: mouse gut metagenome

text: female

text: TPC treatment in lupus mice model

text: TPC

text: TPC

text: not provided

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse gut

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: stool from mouse 9, NZB/W strain recived TPC treatment, day 14

text: Israel:Safed

characteristic: geo loc name

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: adult

characteristic: life stage

characteristic: mouse number

text: mouse gut metagenome

characteristic: organism

text: Bar-Ilan University

text: FALSE

characteristic: proteinuria

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: title

text: TPC treatment in lupus mice model

text: TPC

characteristic: treatment

characteristic: treatment day

text: TPC

characteristic: treatment group

text: not provided

characteristic: weight

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: mouse gut

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: stool from mouse 9, NZB/W strain recived TPC treatment, day 21

text: Israel:Safed

text: mouse

text: Mus musculus

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: Bar-Ilan University

text: FALSE

text: stool

text: mouse gut metagenome

text: female

text: TPC treatment in lupus mice model

text: TPC

text: TPC

text: not provided

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: weeks

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse gut

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: stool from mouse 9, NZB/W strain recived TPC treatment, day 28

text: Israel:Safed

characteristic: geo loc name

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: adult

characteristic: life stage

characteristic: mouse number

text: mouse gut metagenome

characteristic: organism

text: Bar-Ilan University

text: FALSE

characteristic: proteinuria

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

characteristic: title

text: TPC treatment in lupus mice model

text: TPC

characteristic: treatment

characteristic: treatment day

text: TPC

characteristic: treatment group

text: not provided

characteristic: weight

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: weeks

characteristic: age unit

characteristic: anonymized name

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: day

text: mouse gut

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: stool from mouse 9, NZB/W strain recived TPC treatment, day 7

text: Israel:Safed

text: mouse

text: Mus musculus

characteristic: host subject id

characteristic: latitude

text: adult

characteristic: longitude

text: mouse gut metagenome

text: Bar-Ilan University

text: FALSE

text: stool

text: mouse gut metagenome

text: female

text: TPC treatment in lupus mice model

text: TPC

text: TPC

text: not provided

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:INSTITUT PASTEUR

text: Genomic sequence of bacteriophage LF82_P10_ad3 that is able to infect LF82 and MG1655 strains

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title


text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Genomic sequence of bacteriophage LF82_P10_ad5 that is able to infect LF82 and MG1655 strains

characteristic: description

text: Escherichia coli

text: Escherichia coli


text: INSTITUT PASTEUR

text: public

text: Genomic sequence of bacteriophage LF82_P10_ad6 that is able to infect LF82 and MG1655 strains

text: Escherichia coli

text: Escherichia coli


text: PUBLIC HEALTH ENGLAND

text: public

tag: Namespace:PUBLIC HEALTH ENGLAND

characteristic: broker name

text: Neisseria meningitidis

text: Neisseria meningitidis


text: UNIVERSITY OF OSLO

text: public

tag: Namespace:UNIVERSITY OF OSLO

characteristic: collection date

text: Lacustrine

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: Norway

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: 5'- GGCAAGTCTGGTGCCAG -3', 5'- ACGGTATCTRATCRTCTTCG -3'

characteristic: pcr primers

unit: practical salinity unit

characteristic: salinity

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: Pollevann Sediment 18S V4 Amplicon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lacustrine

text: Brackish

text: Sediment

text: Yes

text: Norway

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Pollevann Sediment 18S V4 Amplicon

characteristic: title


text: UNIVERSITY OF OSLO

text: public

characteristic: Submitter Id

characteristic: collection date

text: Marine

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: uncultured eukaryote

text: uncultured eukaryote

text: Pollevann Sediment 18S V4 Amplicon


CFBP 21161

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JLU

text: public

text: CFBP 21161

text: Pseudomonas syringae pv. morsprunorum CFBP 2116

characteristic: description

text: Pseudomonas syringae

text: Pseudomonas syringae

text: CFBP 2116

characteristic: strain


CFBP 2116 pl1

text: JLU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CFBP 2116 pl1

text: Pseudomonas syringae

characteristic: organism

text: Pseudomonas syringae

text: CFBP 2116

text: Pseudomonas syringae pv. morsprunorum CFBP 2116 fragmented plasmid


CFBP 38001

text: JLU

text: public

text: CFBP 38001

characteristic: Submitter Id

text: P. syringae pv. morsprunorum race 2 CFBP 3800 chr

text: Pseudomonas syringae group genomosp. 3

text: Pseudomonas syringae group genomosp. 3

text: CFBP 3800

characteristic: title


CFBP 3800 pl1

text: JLU

text: public

text: CFBP 3800 pl1

text: P. syringae pv. morsprunorum race 2 CFBP 3800 plasmids

text: Pseudomonas syringae group genomosp. 3

text: Pseudomonas syringae group genomosp. 3

text: CFBP 3800


CFBP 61101

text: JLU

text: public

text: CFBP 61101

text: P. syringae pv. cerasicola CFBP 6110 chr

text: Pseudomonas syringae pv. cerasicola

text: Pseudomonas syringae pv. cerasicola

text: CFBP 6110


CFBP 6110 pl1

text: JLU

text: public

text: CFBP 6110 pl1

text: P. syringae pv. cerasicola CFBP 6110 plasmids

text: Pseudomonas syringae pv. cerasicola

text: Pseudomonas syringae pv. cerasicola

text: CFBP 6110


text: URMITE

text: public

text: vagina

characteristic: isolation source

text: Janibacter sp. Marseille-P4121

text: Janibacter sp. Marseille-P4121

text: Janibacter massiliensis genome


text: public

tag: Namespace:RIVM - National Institute for Public Health and the Environment

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Shigella flexneri

text: Shigella flexneri

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: RIVM - National Institute for Public Health and the Environment

text: public

text: not provided

text: not provided

text: Shigella dysenteriae

text: Shigella dysenteriae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not provided

text: not provided

text: Shigella boydii

text: Shigella boydii


text: URMITE

text: public

text: stool

text: Acetanaerobacterium sp. Marseille-P4047

text: Acetanaerobacterium sp. Marseille-P4047

characteristic: strain

text: Neobittarella massiliensis genome


text: URMITE

characteristic: INSDC center name

text: public

text: stool

text: Paenibacillus sp. Marseille-P3787

text: Paenibacillus sp. Marseille-P3787

text: Paenibacillus cagae genome


strain T mat+

text: IED

characteristic: INSDC first public

text: public

text: strain T mat+

text: mat+

characteristic: mating type

text: Podospora comata

text: Podospora comata

text: T

text: Podospora comata strain T mat+


text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:CARDIFF SCHOOL OF BIOSCIENCES

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Bagley

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: 16S rRNA genes from fungus-colonised wood discs


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Bagley

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Trametes versicolor

characteristic: specific host

characteristic: title


text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Bagley

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Vuilleminia comedens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Garth

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method


characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Garth

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Hypholoma fasciculare

characteristic: specific host

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Garth

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Trametes versicolor


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

text: Garth

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: Vuilleminia comedens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tintern

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Tintern

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Trametes versicolor

characteristic: specific host


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

text: Tintern

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: Vuilleminia comedens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tintern

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Hypholoma fasciculare

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Usk

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina


characteristic: ENA-FIRST-PUBLIC

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

text: Usk

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: Trametes versicolor

characteristic: specific host


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Usk

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Vuilleminia comedens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Usk

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Hypholoma fasciculare


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Whitestone

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Whitestone

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Trametes versicolor

characteristic: specific host

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Whitestone

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Vuilleminia comedens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

text: public

text: Whitestone

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: Hypholoma fasciculare


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Wytham

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Vuilleminia comedens

characteristic: specific host

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Wytham

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Trametes versicolor


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

text: public

text: Wytham

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: Hypholoma fasciculare


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Wytham

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

characteristic: title


MS-WyA

characteristic: ENA-CHECKLIST

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: MS-WyA

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Wytham

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina


MS-WyB

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

text: public

text: MS-WyB

text: Wytham

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method


MS-WyC

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: MS-WyC

characteristic: Submitter Id

characteristic: collection date

text: Wytham

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: Vuilleminia comedens

characteristic: specific host

characteristic: title


MS-WyF

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: MS-WyF

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Wytham

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: wood decay metagenome

text: wood decay metagenome

text: Illumina

text: Hypholoma fasciculare


MS-WyI

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC first public

text: public

text: MS-WyI

text: Wytham

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: wood decay metagenome

characteristic: project name

text: wood decay metagenome

text: Illumina

characteristic: sequencing method

text: Trametes versicolor


MS-Neg

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: MS-Neg

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

text: metagenome

text: wood decay metagenome

characteristic: organism

text: wood decay metagenome

text: Illumina

text: 16S rRNA genes from DNA extraction kit negative control

characteristic: title


text: DC

text: female

characteristic: ArrayExpress-SEX

text: Rattus norvegicus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Norway rat

characteristic: common name

text: Female

characteristic: gender

text: Rattus norvegicus

text: Rattus norvegicus

characteristic: subject id


text: DC

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: External Id

text: INSERM

text: public

text: In this study faecal microbiota from control and steatotic patients (n = 3 per group) was transferred to C57BL6 mice (n=8 per donor) and followed for 15 days before evaluating hepatic steatosis.

characteristic: description

text: mus musculus

characteristic: lab host

text: metagenomes

text: metagenomes

text: FLORINASH MOUSE FMT


text: DC

text: female

text: Oryctolagus cuniculus

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: rabbit

text: Female

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus


text: NIOO-KNAW

text: public

characteristic: collection date

text: grassland/forest

characteristic: environment (biome)

text: Greenhouse

characteristic: environment (feature)

text: litter extracted fungi

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

characteristic: organism

text: home field advantage

characteristic: project name

text: uncultured eukaryote

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Marine

text: Fjord

text: Sediment

text: Yes

characteristic: environmental sample

characteristic: further details

text: Norway

text: uncultured eukaryote

text: 5'- GTGCCAGCAGCCGCG -3', 5'- TTTAAGTTTCAGCCTTGCG -3'

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: Drobak Sediment 18S V4 Non-metazoa Amplicon


text: ICL-CFB

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Wild-type and ΔyeaG bacteria were grown in Gutnick minimal medium according to (Figueira et al., Sci Rep, 2015), where the sole source of nitrogen is NH4Cl; overnight cultures were grown in medium containing 10 mM NH4Cl and N-limiting growth curves were carried out in medium containing 3 mM NH4Cl. Cultures were grown as in (Figueira et al., Sci Rep, 2015) and sampled at the following time points: N+, when the OD600nm = 0.3; N-, 20 minutes following N runout; and N-24, where bacteria were subjected to 24 hours of N starvation. Two biological replicates were taken for N+ and N-, and three for N-24. Cultures were mixed with a 1:19 phenol:ethanol solution at a ratio of 9:1 culture:solution and then pelleted. Cell pellets were sent to Vertis Biotechnologie AG for downstream processing exactly as previously described by (Sarkar et al., Nucleic Acids Res, 2017). Total RNA was isolated from the cell pellets using a bead mill and mirVana™ RNA isolation kit (Ambion) according to the manufacturer's instructions. Ribosomal RNA (rRNA) from the total RNA sample was depleted using Ribo-Zero rRNA removal kit for bacteria (Epicentre). The rRNA-depleted RNA samples were fragmented using RNase III. Samples were then poly (A)-tailed followed by treatment with Tobacco Acid Pyrophosphatase (TAP, Epicentre). First strand cDNA synthesis was performed using oligo (dT)-adapter primer and M-MLV reverse transcriptase. Resulting cDNAs were PCR amplified. The primers used for PCR amplification were designed for TruSeq sequencing according to the manufacturer's guidelines (Illumina).

characteristic: description

text: wild-type

characteristic: genotype

text: Gutnick minimal medium with 3 millimolar NH4Cl

characteristic: growth condition

text: Escherichia coli K-12

characteristic: organism

text: Escherichia coli K-12

text: Escherichia coli K-12

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ICL-CFB

characteristic: INSDC center name

text: public

text: ArrayExpress

text: yeaG

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

characteristic: title


E-MTAB-6483:Sample 1

text: BAH-GU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6483:Sample 1

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cells were washed 2x with PBS and lysed directly on growth plates using Qiagen RNEasy lysis buffer Cells were maintained in RPMI1640 media supplemented with 10% FBS and Penn/Strep. Cells were passaged every 2-3 days for no more than 20 passages. Cells in log phase growth were treated with Neratinib (500nM) or DMSO vehicle control for 20 hrs, starting less than 24 hrs after seeding in fresh media. Nucleic acids were isolated using Qiagen RNEast kits according to the manufacturer's instructions cDNA was synthesized with the TruSeq Stranded mRNA Library Prep Kit (Illumina)

text: lung adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-6483:Sample 2

text: BAH-GU

text: public

text: E-MTAB-6483:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: lung adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 2


E-MTAB-6483:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: BAH-GU

text: public

text: E-MTAB-6483:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 3


E-MTAB-6483:Sample 4

characteristic: External Id

text: BAH-GU

characteristic: INSDC center name

text: public

text: E-MTAB-6483:Sample 4

text: ArrayExpress

text: epithelial cell

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 4

characteristic: title


E-MTAB-6483:Sample 5

text: BAH-GU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6483:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 5


E-MTAB-6483:Sample 6

text: BAH-GU

text: public

characteristic: SRA accession

text: E-MTAB-6483:Sample 6

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: lung adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 6


E-MTAB-6485:Sample 1

text: BAH-GU

text: public

text: E-MTAB-6485:Sample 1

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: Protocols: Cells were washed 2x in PBS and lysed directlt on growth plates using Qiagen RNEasy lysis buffer Cells were maintained in RPMI1640 media supplemented with 10% FBS and penn/strep. Cells were passaged every 2-3 days and discarded after no more than 20 passages Log phase growth cells were treated overnight with 250nM Neratinib or DMSO vehicle control for 20hrs, starting less than 24hrs after seeding in fresh media Total RNA was isolated using the RNEasy Mini Kit (Qiagen) according to manufacturer’s instructions and DNA was depleted with the RNase-Free DNase Set cDNA was synthesized with the TruSeq Stranded mRNA Library Prep Kit (Illumina)

text: non-small cell lung carcinoma

characteristic: disease

text: alveolus

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-6485:Sample 2

text: BAH-GU

text: public

text: E-MTAB-6485:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: non-small cell lung carcinoma

text: alveolus

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 2


E-MTAB-6485:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BAH-GU

text: public

text: E-MTAB-6485:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

text: non-small cell lung carcinoma

text: alveolus

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 3


E-MTAB-6485:Sample 4

text: BAH-GU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6485:Sample 4

text: ArrayExpress

text: epithelial cell

text: human

text: non-small cell lung carcinoma

text: alveolus

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 4

characteristic: title


E-MTAB-6485:Sample 5

text: BAH-GU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6485:Sample 5

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: non-small cell lung carcinoma

text: alveolus

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 5


E-MTAB-6485:Sample 6

text: BAH-GU

text: public

text: E-MTAB-6485:Sample 6

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: non-small cell lung carcinoma

characteristic: disease

text: alveolus

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 6


E-MTAB-6486:Sample 1

text: BAH-GU

text: public

text: E-MTAB-6486:Sample 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: Protocols: Clles were washed 2x in PBS and lysd directly on growth plates using Qiagen RNEassy lysis buffer Cells were maintained in RPMI1640 media supplemented with 10% FBS & penn/strep. Cells were passaged every 2-3 days and discarded after no more than 20 passages Cells in log phase growth were treated with 500nM Neratinib or DMSO vehicle control for 20 hrs, commencing less than 24 hrs after reseeding in fresh media Total RNA was isolated using the RNEasy Mini Kit (Qiagen) according to manufacturer’s instructions and DNA was depleted with the RNase-Free DNase Set cDNA was synthesized with the TruSeq Stranded mRNA Library Prep Kit (Illumina)

characteristic: description

text: lung adenocarcinoma

text: lymph node

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 1


E-MTAB-6486:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BAH-GU

text: public

text: E-MTAB-6486:Sample 2

text: ArrayExpress

text: epithelial cell

text: human

text: lung adenocarcinoma

text: lymph node

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 2


E-MTAB-6486:Sample 3

text: BAH-GU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6486:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

text: lung adenocarcinoma

text: lymph node

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-6486:Sample 4

text: BAH-GU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6486:Sample 4

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: lung adenocarcinoma

text: lymph node

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 4


E-MTAB-6486:Sample 5

text: BAH-GU

text: public

text: E-MTAB-6486:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: lung adenocarcinoma

characteristic: disease

text: lymph node

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Homo sapiens

text: Sample 5


E-MTAB-6486:Sample 6

text: BAH-GU

text: public

text: E-MTAB-6486:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: lung adenocarcinoma

text: lymph node

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Homo sapiens

text: Sample 6


E-MTAB-6477:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6477:Sample 1

tag: Namespace:Institute for Clinical Immunology and Transfusion Medicine Justus-Liebig-University Giessen

text: ArrayExpress

text: alveolar macrophage

text: house mouse

text: Protocols: Alveolar macrophages of CD11c-Cre-ADAR1Δ7-9/Δ7-9 and CD11c-Cre-ADAR1wt/wt control mice were collected from BAL fluid and purified by CD11b MagniSort depletion and CD11c MagniSort enrichment. Whole RNA was isolated using the RNeasy Plus Micro Kit and stored at -80°C until further processing. Integrity of total RNA was assessed on the Bio-Rad Experion. Semi-automated library preparation was performed on the IP-Star (Diagenode) using the TruSeq Stranded mRNA Kit (Illumina). Each library was quantified and qualified on a Bioanalyzer 2100 (High Sensitivity DNA Kit, Agilent Technologies). Equimolar amounts of libraries were pooled and quantified by digital PCR using the QuantStudio™ 3D Digital PCR System (Life Technologies).

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

text: ADAR1 knockout

characteristic: phenotype

text: Mus musculus

text: Sample 1


E-MTAB-6477:Sample 2

text: Institute for Clinical Immunology and Transfusion Medicine Justus-Liebig-University Giessen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6477:Sample 2

text: ArrayExpress

text: alveolar macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: lung

text: wild type

text: Mus musculus

text: Sample 2

characteristic: title


text: UOM

text: public

text: 10 to 12

unit: week

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Mice were euthanised prior to infection (d0), at the onset of ECM (d6 p.i. RMCBS ≤15), in late-stage ECM (d7 p.i. RMCBS ≤6), and after responding successfully to anti-malarial drug treatment (d7+AC, d10, d14, d30 and d60 p.i. RMCBS >6). Euthanised mice were transcardially perfused with PBS, brains isolated and stored at -80°C until use. Female and male 8-10 week old C57BL/6 mice were purchased from Charles River. All mice were maintained in individually ventilated cages at the University of Manchester. Cryopreserved Pb ANKA parasites (PMID: 22216235) were thawed and passaged once through C57BL/6 mice before being used to infect experimental animals. Animals were infected via intravenous injection of 1x104 pRBCs. Peripheral parasite burdens of infected mice were followed from day 3 p.i. by microscopic examination of giemsa stained thin blood smears. The development of, and subsequent recovery from, experimental cerebral malaria (ECM) was assessed using the rapid murine coma and behaviour scale (RMCBS) [PMID: 27091974]. Mice that scored ≤15 on the RMCBS (invariably d6 p.i.) received up to 6 daily intraperitoneal (i.p.) injections of 30mg/kg artesunate (Sigma) and 30mg/kg chloroquine (Sigma) in PBS or, alternatively, PBS alone. Mice were euthanised prior to infection (d0), at the onset of ECM (d6 p.i. RMCBS ≤15), in late-stage ECM (d7 p.i. RMCBS ≤6), and after responding successfully to anti-malarial drug treatment (d7+AC, d10, d14, d30 and d60 p.i. RMCBS >6). Whole brains were homogenised in Trizol, before using lipid tissue RNA easy kits according to the manufacturer’s instructions (Qiagen) to isolate RNA. Isolated RNA was treated with DNAse to remove genomic DNA contamination prior to QC analysis and use in RNA-Seq analysis. Truseq stranded mRNA Assay. Paired end.

text: cerebral malaria

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: successful response to drug treatment

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

characteristic: Submitter Id

text: 12 to 14

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: cerebral malaria

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: successful response to drug treatment

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 16 to 18

text: ArrayExpress

text: house mouse

text: cerebral malaria

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

text: successful response to drug treatment

characteristic: phenotype

text: Mus musculus

text: female


text: UOM

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9 to 11

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: cerebral malaria

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: onset of experimental cerebral malaria

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

text: 9 to 11

text: ArrayExpress

text: house mouse

text: cerebral malaria

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: late-stage experimental cerebral malaria

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

text: public

characteristic: Submitter Id

text: 9 to 11

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: cerebral malaria

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: successful response to drug treatment

text: Mus musculus

text: female


text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 8 to 10

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

text: wild type

characteristic: phenotype

text: Mus musculus

text: female


E-MTAB-6484:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Otago

text: public

characteristic: SRA accession

text: E-MTAB-6484:Sample 1

tag: Namespace:University of Otago

text: ArrayExpress

text: Protocols: Two cultures of E. faecalis were grown to an OD600 of 0.2 and subsequently split into three to form a total of six cultures (two samples, with three technical replicates each), and grown to an OD600 of 0.5. One set of three cultures were treated with 0.5 ug/ml (0.25 x MIC), and all six cultures were grown for a further 1h. Cells were harvested by centrifugation and stored at -80 degrees C. Cells were harvested by centrifugation in 3:2 glycerol saline at 1Ok x g for 20mins at -10 degrees C. Cells were resuspended in 1:1 glycerol saline, snap frozen and stored at -80 degrees C for RNA extraction the following day. Two 100ml Schott bottles containing 62.5ml of brain heart infusion (BHI) broth were inoculated 1/100 with E. faecalis JH2-2 overnight culture and grown to an OD600 of 0.2 (37 degrees C with gentle agitation). Each culture was split into triplicate and grown to an OD600 of 0.5. One set of triplicates were treated with 0.5ug/ml of teixobactin, while the other set of triplicates were an untreated control. Cells were grown for a further 1 h and harvested as stated above. RNA was extracted by TRIzol-chloroform as per manufacturers instructions. Residual DNA was removed from samples using the Ambion TURBO DNA-free kit. RNA was further purified using the RNeasy Mini Kit (Qiagen) as per the manufacturers instructions. The Illumina TruSeq stranded total RNA library prep kit and ribosomal RNA was removed using Ribo-Zero.

text: wild type genotype

text: BHI broth

characteristic: growth condition

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Sample 1

characteristic: title


E-MTAB-6484:Sample 2

characteristic: ENA-LAST-UPDATE

text: University of Otago

text: public

text: E-MTAB-6484:Sample 2

text: ArrayExpress

text: wild type genotype

text: BHI broth

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Enterococcus faecalis

characteristic: strain

text: Sample 2


characteristic: External Id

text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

tag: Namespace:MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: Submitter Id

characteristic: collection date

text: mouse colon

characteristic: environment (biome)

text: mouse colon

characteristic: environment (feature)

text: fecal pellet

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: uncultured bacterium

text: Intestinal microbiota hematopoietic reconstitution mice

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEMORIAL SLOAN KETTERING CANCER CENTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mosue colon

text: Mouse colon

text: Fecal sample

text: USA

text: host-associated

text: metagenome

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Illumina MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: Submitter Id

characteristic: collection date

text: foxtail millet

characteristic: common name

text: 30 GB

characteristic: estimated size

text: China

text: PMID: 26559175

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: heading stage

characteristic: plant developmental stage

text: nature soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Setaria italica

text: BSAseq of sistl2

characteristic: title


wildtype

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: wildtype

text: foxtail millet

text: 30 GB

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: PMID: 26559175

text: Setaria italica

text: heading stage

text: nature soil

text: leaf

text: Setaria italica

text: BSAseq of sistl2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CAWTHRON INSTITUTE

characteristic: Submitter Id

text: uncultured eukaryote

text: environmental samples

characteristic: description

text: marine neritic benthic zone biome

characteristic: environment (biome)

text: marine sub-littoral zone

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: Tasman Sea

text: uncultured eukaryote

characteristic: organism

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-3

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: EukBank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-4

text: uncultured eukaryote

text: EukBank

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured eukaryote

text: environmental samples

characteristic: description

text: marine neritic benthic zone biome

characteristic: environment (biome)

text: marine sub-littoral zone

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Yes

text: Tasman Sea

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-5

text: uncultured eukaryote

text: EukBank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

characteristic: environmental sample

characteristic: further details

text: Tasman Sea

text: uncultured eukaryote

characteristic: organism

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-6

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: EukBank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-7

text: uncultured eukaryote

text: EukBank

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured eukaryote

text: environmental samples

characteristic: description

text: marine neritic benthic zone biome

characteristic: environment (biome)

text: marine sub-littoral zone

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Yes

text: Tasman Sea

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-8

text: uncultured eukaryote

text: EukBank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: uncultured eukaryote

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

characteristic: environmental sample

characteristic: further details

text: Tasman Sea

text: uncultured eukaryote

characteristic: organism

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-9

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: EukBank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-10

text: uncultured eukaryote

text: EukBank

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured eukaryote

text: environmental samples

characteristic: description

text: marine neritic benthic zone biome

characteristic: environment (biome)

text: marine sub-littoral zone

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Yes

text: Tasman Sea

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-11

text: uncultured eukaryote

text: EukBank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured eukaryote

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

characteristic: environmental sample

characteristic: further details

text: Tasman Sea

text: uncultured eukaryote

characteristic: organism

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-12

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: EukBank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-13

text: uncultured eukaryote

text: EukBank

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured eukaryote

text: environmental samples

characteristic: description

text: marine neritic benthic zone biome

characteristic: environment (biome)

text: marine sub-littoral zone

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: Yes

text: Tasman Sea

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-14

text: uncultured eukaryote

text: EukBank


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CAWTHRON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: uncultured eukaryote

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

characteristic: environmental sample

characteristic: further details

text: Tasman Sea

text: uncultured eukaryote

characteristic: organism

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-15

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: EukBank


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CAWTHRON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: uncultured eukaryote

characteristic: common name

text: environmental samples

text: marine neritic benthic zone biome

text: marine sub-littoral zone

text: sediment

text: Yes

text: Tasman Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: Uni18SF: 5-AGG GCA AKY CTG GTG CCA GC-3 and Uni18SR: 5-GRC GGT ATC TRA TCG YCT T-16

text: uncultured eukaryote

text: EukBank

characteristic: title