SampleFiiEas

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFiiEas

text: Fii

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

text: SampleFiiEas

characteristic: sample id

text: soil metagenome

text: Summer

text: Early Summer

text: Eas

text: 16S rRNA sample, Arctic soil, V3-V4


status: PUBLIC

tag: attribute

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF WATERLOO

characteristic: Submitter Id

text: Soil samples taken from Arctic soil at various depths. 16S rRNA gene sequences, V3-V4 region, 341f/806r

characteristic: description

characteristic: doc

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Summer

text: Early Summer

characteristic: soil depth

text: Eas

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

characteristic: sample id

text: soil metagenome

text: Summer

text: Early Summer

text: Wes

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFiiWes

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFiiWes

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fii

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFiiWes

text: soil metagenome

text: Summer

text: Early Summer

characteristic: soil depth

text: Wes

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFiWes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFiWes

text: Fi

text: soil metagenome

text: SampleFiWes

text: soil metagenome

text: Summer

text: Early Summer

text: Wes

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

characteristic: doc

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

characteristic: sample id

text: soil metagenome

text: Summer

text: Mid Summer

text: XXX

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFviiiXXX

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFviiiXXX

text: Fviii

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFviiiXXX

text: soil metagenome

text: Summer

text: Mid Summer

characteristic: soil depth

text: XXX

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFiXXX

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFiXXX

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fi

text: soil metagenome

text: SampleFiXXX

text: soil metagenome

text: Summer

text: Mid Summer

text: XXX

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

characteristic: sample id

text: soil metagenome

text: Summer

text: Mid Summer

text: Yes

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFiYes

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFiYes

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fi

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFiYes

text: soil metagenome

text: Summer

text: Mid Summer

characteristic: soil depth

text: Yes

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFiiiYes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFiiiYes

text: Fiii

text: soil metagenome

text: SampleFiiiYes

text: soil metagenome

text: Summer

text: Mid Summer

text: Yes

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


SampleFiZeb

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFiZeb

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fi

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

text: SampleFiZeb

characteristic: sample id

text: soil metagenome

text: Summer

text: Mid Summer

text: Zeb

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFviZeb

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFviZeb

text: Fvi

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFviZeb

text: soil metagenome

text: Summer

text: Mid Summer

characteristic: soil depth

text: Zeb

text: 16S rRNA sample, Arctic soil, V3-V4


text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: soil metagenome

text: soil metagenome

text: Summer

text: Mid Summer

text: Zeb

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

characteristic: sample id

text: soil metagenome

text: Autumn

text: Autumn

text: Rem

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFvRem

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFvRem

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fv

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFvRem

text: soil metagenome

text: Autumn

text: Autumn

characteristic: soil depth

text: Rem

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFiiiRem

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFiiiRem

text: Fiii

text: soil metagenome

text: SampleFiiiRem

text: soil metagenome

text: Autumn

text: Autumn

text: Rem

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

characteristic: doc

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

characteristic: sample id

text: soil metagenome

text: Autumn

text: Autumn

text: Sea

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFviiSea

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFviiSea

text: Fvii

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFviiSea

text: soil metagenome

text: Autumn

text: Autumn

characteristic: soil depth

text: Sea

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFivSea

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFivSea

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fiv

text: soil metagenome

text: SampleFivSea

text: soil metagenome

text: Autumn

text: Autumn

text: Sea

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: mbn

characteristic: mbp

text: soil metagenome

characteristic: ph

characteristic: sample date

characteristic: sample id

text: soil metagenome

text: Autumn

text: Autumn

text: Tea

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFvTea

text: UNIVERSITY OF WATERLOO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SampleFvTea

characteristic: Submitter Id

characteristic: description

characteristic: doc

text: Fv

characteristic: julian day

characteristic: lab id

characteristic: mbc

text: soil metagenome

characteristic: organism

text: SampleFvTea

text: soil metagenome

text: Autumn

text: Autumn

characteristic: soil depth

text: Tea

text: 16S rRNA sample, Arctic soil, V3-V4


SampleFivTea

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERLOO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SampleFivTea

text: Fiv

text: soil metagenome

text: SampleFivTea

text: soil metagenome

text: Autumn

text: Autumn

text: Tea

characteristic: tdn

characteristic: temperature

text: 16S rRNA sample, Arctic soil, V3-V4

characteristic: title

characteristic: total c

characteristic: total n


text: EESC/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Anox-SBR

characteristic: description

text: anaerobic biomass

characteristic: environment (biome)

text: anaerobic biomass

characteristic: environment (feature)

text: anaerobic biomass

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: NITRIFIERS AND METHANE-OXIDIZING ARCHAEA

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Anox-SBR

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: anaerobic biomass

text: anaerobic biomass

text: anaerobic biomass

text: Brazil

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

characteristic: title

text: wastewater/sludge


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Chengdu research base of giant panda breeding

characteristic: Submitter Id

characteristic: collection date

text: feces

characteristic: description

text: panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

text: China

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

text: metagenome

text: metagenome

text: pyrosequencing

text: The stool of giant panda


characteristic: ENA-CHECKLIST

text: Chengdu research base of giant panda breeding

text: public

text: feces

text: panda

text: gut

text: feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: The stool of giant panda


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF NEW SOUTH WALES

text: metagenomes

characteristic: common name

text: metagenomes

characteristic: organism

text: metagenomes

text: esophageal brushing

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: giant panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

text: Study for giant panda gut microbiota and cellulose digestion mechanism

text: metagenome

text: Hiseq Illumina


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

tag: Namespace:UNIVERSITY OF COLOGNE

text: Jan 5, 2014

text: Germany, 4, Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Jan 7, 2014

text: Germany, 4, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

text: Jan 13, 2014

text: Germany, 4, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Jan 20, 2014

characteristic: collection date

text: Germany, 1, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: Jan 20, 2014

text: Germany, 4, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jan 21, 2014

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jan 19, 2013

text: Germany, , Cologne

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jan 27, 2014

text: Germany, 1, Cologne

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jan 30, 2014

text: Germany, 4, Cologne

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY HOSPITAL ZURICH

text: public

tag: Namespace:UNIVERSITY HOSPITAL ZURICH

text: keratinocytes

characteristic: cell type

text: house mouse

characteristic: common name

text: transgenic Card14 delE138 Adult 1

characteristic: description

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UNIVERSITY HOSPITAL ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: keratinocytes

text: house mouse

text: transgenic Card14 delE138 Adult 2

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UNIVERSITY HOSPITAL ZURICH

text: public

characteristic: INSDC status

text: keratinocytes

text: house mouse

text: transgenic Card14 delE138 Adult 3

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY HOSPITAL ZURICH

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: keratinocytes

text: house mouse

text: WildType Adult 1

text: Mus musculus

text: Mus musculus


text: UNIVERSITY HOSPITAL ZURICH

text: public

text: keratinocytes

text: house mouse

text: WildType Adult 2

text: Mus musculus

text: Mus musculus


text: UNIVERSITY HOSPITAL ZURICH

text: public

text: keratinocytes

text: house mouse

text: WildType Adult 3

text: Mus musculus

text: Mus musculus


text: UNIVERSITY OF COLOGNE

text: public

text: Feb 3, 2014

characteristic: collection date

text: Germany, 1, Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: Feb 3, 2014

text: Germany, Cologne

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: Feb 17, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

text: public

text: Mar 3, 2014

text: Germany, 5, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC first public

text: public

text: Feb 28, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

text: Mar 17, 2014

text: Germany, 3, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: Mar 21, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

text: Mar 28, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Mar 29, 2014

text: Germany, 2, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Mar 31, 2014

text: Germany, 2, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: Apr 7, 2014

text: Germany, 3, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

text: Apr 9, 2014

text: Germany, 3, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: Apr 14, 2014

text: Germany, 3, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Apr 27, 2014

characteristic: collection date

text: Germany, 1, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Apr 28, 2014

text: Germany, 2, Cologne

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: May 2, 2014

text: Germany, 1, Cologne

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: CENTRE FOR GENOMIC RESEARCH (CGR)

text: public

tag: Namespace:CENTRE FOR GENOMIC RESEARCH (CGR)

text: Pacific Biosciences Sequencing of experimentally evolved Pseudomonas aeruginosa LESB65 (pmrAB mutants)

characteristic: description

text: Pseudomonas aeruginosa LESB65

text: Pseudomonas aeruginosa LESB65

text: P. aeruginosa LESB65 pmrB mutant


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: May 5, 2014

text: Germany, 3, Cologne

text: Homo sapiens

text: Yes

characteristic: host associated

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: May 23, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: May 27, 2014

text: Germany, 7, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

text: May 31, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

text: Jul 4, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: Jul 7, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Aug 6, 2014

text: Germany, 6, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Feb 25, 2013

characteristic: collection date

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


E-MTAB-6577:Sample 1

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 1

tag: Namespace:PDRA, Bioinformatician

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: Protocols: Arabidopsis thaliana rosette leaves collected from 5-week-old plants and frozen (-20 degres celsius) Arabidopsis thaliana grown under long day conditions (16 hr light) and 20 degrees Celcius. Genotypes: HEI10 overexpression line - HEI10 was amplified from Col or Ler genomic DNA using primers HEI10-XbaI and HEI10-BamHI (Supplemental Table S29). Amplification products were cloned into the pGREEN-0029 binary vector using XbaI and BamHI restriction enzymes. Promoter swap constructs were generated using XbaI/PacI digestion and vector religation. These vectors were transformed into Col-420 FTL hemizygous plants using Agrobacterium strain GV3101 and floral dipping.( text taken from doi: 10.1101/gad.295501.116 Ziolkowski et al, 2017) and recq4a recq4b mutant lines recq4a-4 (N419423) recq4b-2 (N511130) (mutation described in paper: doi: 10.1073/pnas.0705998104 reference. Text taken from doi: 10.1073/pnas.1423107112 Seguela-Arnaud et al, 2015) Standard CTAB DNA extraction. DNA was extracted using CTAB and used to generate sequencing libraries as described (Rowan et al. 2015; Yelina et al. 2015) with the following modifications. DNA was extracted from three rosette leaves of 5-wk-old plants, and 150 ng of DNA was used as input for each library. DNA was sheared for 20 min at 37°C with 0.4 U of DNA Shearase (Zymo research). Each set of 96 libraries was sequenced on one lane of an Illumina NextSeq500 instrument (300-cycle Mid Output run). Text taken from: doi: 10.1101/gad.295501.116 TruSeq DNA sample prep kit. Illumina sequencing: DNA was extracted from three rosette leaves of 5-wk-old plants, and 150 ng of DNA was used as input for each library. DNA was sheared for 20 min at 37°C with 0.4 U of DNA Shearase (Zymo research). Each set of 96 libraries was sequenced on one lane of an Illumina NextSeq500 instrument (300-cycle Mid Output run). (text taken from doi: 10.1101/gad.295501.116 Ziolkowski et al, 2017)

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 1


E-MTAB-6577:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 10

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-6577:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 11

characteristic: title


E-MTAB-6577:Sample 12

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 12

text: ArrayExpress

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-6577:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC center name

text: public

text: E-MTAB-6577:Sample 13

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 13


E-MTAB-6577:Sample 14

characteristic: ENA-FIRST-PUBLIC

text: PDRA, Bioinformatician

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6577:Sample 14

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 14


E-MTAB-6577:Sample 15

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 15

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 15

characteristic: title


E-MTAB-6577:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 16

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 16


E-MTAB-6577:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 17

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 17


E-MTAB-6577:Sample 18

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6577:Sample 18

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 18


E-MTAB-6577:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 19

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 19

characteristic: title


E-MTAB-6577:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 2

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-6577:Sample 20

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 20

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 20


E-MTAB-6577:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 21

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 21


E-MTAB-6577:Sample 22

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 22

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 22

characteristic: title


E-MTAB-6577:Sample 23

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 23

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 23


E-MTAB-6577:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 24

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 24


E-MTAB-6577:Sample 25

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 25

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 25


E-MTAB-6577:Sample 26

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 26

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 26

characteristic: title


E-MTAB-6577:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 27

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 27


E-MTAB-6577:Sample 28

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 28

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 28


E-MTAB-6577:Sample 29

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 29

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 29


E-MTAB-6577:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 3

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 3

characteristic: title


E-MTAB-6577:Sample 30

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 30

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 30


E-MTAB-6577:Sample 31

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 31

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 31


E-MTAB-6577:Sample 32

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 32

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 32


E-MTAB-6577:Sample 33

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 33

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 33

characteristic: title


E-MTAB-6577:Sample 34

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 34

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 34


E-MTAB-6577:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 35

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 35


E-MTAB-6577:Sample 36

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 36

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 36


E-MTAB-6577:Sample 37

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 37

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 37

characteristic: title


E-MTAB-6577:Sample 38

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 38

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 38


E-MTAB-6577:Sample 39

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 39

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 39


E-MTAB-6577:Sample 4

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 4

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-6577:Sample 40

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 40

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 40

characteristic: title


E-MTAB-6577:Sample 41

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 41

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 41


E-MTAB-6577:Sample 42

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 42

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 42


E-MTAB-6577:Sample 43

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 43

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 43


E-MTAB-6577:Sample 44

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 44

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 44

characteristic: title


E-MTAB-6577:Sample 45

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 45

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 45


E-MTAB-6577:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 46

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 46


E-MTAB-6577:Sample 47

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 47

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 47


E-MTAB-6577:Sample 48

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 48

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 48

characteristic: title


E-MTAB-6577:Sample 49

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 49

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 49


E-MTAB-6577:Sample 5

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 5

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 5


E-MTAB-6577:Sample 50

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 50

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 50


E-MTAB-6577:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 51

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 51

characteristic: title


E-MTAB-6577:Sample 52

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 52

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 52


E-MTAB-6577:Sample 53

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 53

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 53


E-MTAB-6577:Sample 54

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 54

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 54


E-MTAB-6577:Sample 55

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 55

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 55

characteristic: title


E-MTAB-6577:Sample 56

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 56

text: ArrayExpress

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text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 56


E-MTAB-6577:Sample 57

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 57

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 57


E-MTAB-6577:Sample 58

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 58

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 58


E-MTAB-6577:Sample 59

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 59

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 59

characteristic: title


E-MTAB-6577:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 6

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-6577:Sample 60

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 60

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 60


E-MTAB-6577:Sample 61

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 61

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 61


E-MTAB-6577:Sample 62

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 62

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 62

characteristic: title


E-MTAB-6577:Sample 63

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 63

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 63


E-MTAB-6577:Sample 64

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 64

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 64


E-MTAB-6577:Sample 65

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 65

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 65


E-MTAB-6577:Sample 66

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 66

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 66

characteristic: title


E-MTAB-6577:Sample 67

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 67

text: ArrayExpress

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text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 67


E-MTAB-6577:Sample 68

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 68

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 68


E-MTAB-6577:Sample 69

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 69

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 69


E-MTAB-6577:Sample 7

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6577:Sample 7

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 7

characteristic: title


E-MTAB-6577:Sample 70

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 70

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 70


E-MTAB-6577:Sample 71

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 71

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 71


E-MTAB-6577:Sample 72

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 72

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 72


E-MTAB-6577:Sample 73

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 73

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: Col-0/Ler-0 F2

characteristic: cultivar

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 73

characteristic: title


E-MTAB-6577:Sample 74

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: PDRA, Bioinformatician

text: public

text: E-MTAB-6577:Sample 74

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 74


E-MTAB-6577:Sample 8

text: PDRA, Bioinformatician

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6577:Sample 8

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: time

text: Sample 8


E-MTAB-6577:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: PDRA, Bioinformatician

text: public

characteristic: SRA accession

text: E-MTAB-6577:Sample 9

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: thale cress

text: Col-0/Ler-0 F2

text: leaf production stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

text: Arabidopsis thaliana

text: Sample 9


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: Mar 14, 2014

characteristic: collection date

text: Germany, 3, Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Blood

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Apr 5, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: Jun 20, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Jul 6, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jun 16, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: Jan 22, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: Jan 22, 2014

text: not available, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Feb 10, 2014

characteristic: collection date

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jun 15, 2014

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:Center for Innovative Medicine & Department for Biosciences and Nutrition, Karolinska Institutet

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Mouse work: Lgr5-EGFP-Ires-creERT2, Lgr6-EGFP-Ires-creERT2 and R26R-tdTomato knock-in strains were described previously. All experiments were performed on young adult females of C57BL/6 background. Unless stated differently, tracing of Lgr5-EGFP and Lgr6-EGFP cells was induced by intraperitoneal injection of 2 x 3 mg of Tamoxifen (1 day apart) at around 7 weeks of age and at least one week prior to wounding. Two 4 mm diameter full thickness wounds were created on the dorsal skin of anesthetized mice at 8 weeks of age by holding up a skin fold and piercing it on both sides with a dermatological biopsy punch. Wounds were allowed to heal for 1 day, 4-5 days, 7-8 days, 10-12 days and more than one month before mice were carefully sacrificed by cervical dislocation without tearing the wounds. In addition, unwounded controls were taken at the same age (0-day control). All animal experiments were performed in accordance to Swedish legislation and approved by the Stockholm South Animal Ethics Committee. Cell isolation: Full epidermal cells were isolated as described previously (Jaks et al., 2008) with minor changes to the protocol. Before cell isolation commenced, brightfield and fluorescence pictures of all wound were taken using a Zeiss Discovery v20 stereomicroscope. The complete dorsal skin including the wound sites was then carefully removed, floated on ice-cold HBSS and small circles of skin were cut from around the two wound sites (wound area) and from unwounded skin (control area) using a 12-mm dermatological biopsy punch. Next, dermal and adipose tissue was carefully scraped off using a scalpel with special attention to not losing wound front, wound epidermis or wound matrix cells. The stripes of skin were subsequently floated on trypsin (Sigma) for 2h at 32°C, epidermal tissue and wound matrix was scraped into S-MEM / 1% BSA and a single cell suspension was obtained by carefully pipetting up and down. The resulting cell suspension was filtered through 70 µm and 40 µm cell strainers, resuspended in Defined Keratinocyte Serum-free Medium without supplement (DK-SFM) (Life Technologies) and transferred to 5 ml FACS tubes coated with poly-HEMA. Tomato-traced cells were sorted using a FACSAria III (BD). Thresholds were set by analysing R26R-tdTomato-negative Lgr5-EGFP-Ires-creERT2 or Lgr6-EGFP-Ires-creERT2 mice and then maintained over all experiments. For each experiment, wound area and control area cells were captured on 3:1 medium microfluidic chips (designed for cells from 10 µm - 17 µm) using several Fluidigm C1 Autoprep systems in parallel. Ideally, a concentration of >500 cells / µl in DK-SFM with DNase I was used for capturing. Capturing efficiency and cell quality was evaluated on a Nikon Eclipse Ti-U automated microscope and both brightfield and Cy3 images of every capturing position were taken. Only single, healthy looking, Tomato-positive cells proceeded to library preparation. Single-cell cDNA synthesis, tagmentation and isolation of 5’ fragments, Illumina high-throughput sequencing and processing of sequencing reads was performed as described previously (Joost et al 2016). All single-cell experiments were performed with the help of the Eukaryotic Single Cell Genomics core facility at SciLifeLab, Stockholm. Library preparation from single-cell cDNA was performed using a tagmentation-based approach as described in detail in Islam et al., 2014.

characteristic: description

characteristic: genotype

characteristic: individual

text: two 4 millimeter cutaneous wounds

characteristic: injury

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

characteristic: phenotype

text: wound area

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen; 2 x 3 milligram

characteristic: stimulus

characteristic: strain

text: wound cell

characteristic: wound cell classification

text: Lgr6 2

characteristic: wound cell population


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Innovative Medicine & Department for Biosciences and Nutrition, Karolinska Institutet

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: keratinocyte

text: house mouse

text: two 4 millimeter cutaneous wounds

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: title

text: wound cell

text: Lgr6 2


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

characteristic: individual

text: two 4 millimeter cutaneous wounds

characteristic: injury

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

characteristic: phenotype

text: wound area

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen; 2 x 3 milligram

text: wound cell

text: Lgr6 3A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: keratinocyte

text: house mouse

text: two 4 millimeter cutaneous wounds

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: stimulus

characteristic: strain

text: wound cell

characteristic: wound cell classification

text: Lgr6 3B

characteristic: wound cell population


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

characteristic: individual

text: two 4 millimeter cutaneous wounds

characteristic: injury

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: unwounded skin

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: title

text: control cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: keratinocyte

text: house mouse

text: two 4 millimeter cutaneous wounds

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

characteristic: phenotype

text: unwounded skin

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen; 2 x 3 milligram

text: removed


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: two 4 millimeter cutaneous wounds

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: stimulus

characteristic: strain

text: removed

characteristic: wound cell classification


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: keratinocyte

text: house mouse

characteristic: individual

text: two 4 millimeter cutaneous wounds

characteristic: injury

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: title

text: control cell


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: two 4 millimeter cutaneous wounds

text: Mus musculus

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

characteristic: phenotype

text: wound area

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen; 2 x 3 milligram

text: wound cell

text: uHF

characteristic: wound cell population


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: keratinocyte

text: house mouse

characteristic: description

characteristic: genotype

text: two 4 millimeter cutaneous wounds

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: stimulus

characteristic: strain

text: wound cell

characteristic: wound cell classification

text: Lgr6 1B


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

text: unwounded skin

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: title

text: control cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: keratinocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

characteristic: phenotype

text: unwounded skin

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen; 2 x 3 milligram

text: removed


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

text: house mouse

characteristic: description

characteristic: genotype

text: two 4 millimeter cutaneous wounds

characteristic: injury

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: stimulus

characteristic: strain

text: wound cell

characteristic: wound cell classification

text: Lgr5 0

characteristic: wound cell population


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: individual

text: two 4 millimeter cutaneous wounds

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: title

text: wound cell

text: Lgr5 1B


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

text: house mouse

characteristic: description

characteristic: genotype

text: two 4 millimeter cutaneous wounds

characteristic: injury

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

characteristic: phenotype

text: wound area

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen; 2 x 3 milligram

text: wound cell

text: Lgr5 2A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: keratinocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: two 4 millimeter cutaneous wounds

text: Mus musculus

text: Mus musculus

text: dorsal skin

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: stimulus

characteristic: strain

text: wound cell

characteristic: wound cell classification

text: Lgr5 1A

characteristic: wound cell population


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: keratinocyte

text: house mouse

characteristic: description

characteristic: genotype

characteristic: individual

text: two 4 millimeter cutaneous wounds

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dorsal skin

characteristic: organism part

text: Tomato-positive

text: wound area

text: Mus musculus

text: female

text: tamoxifen; 2 x 3 milligram

characteristic: title

text: wound cell

text: Lgr6 1A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Jul 7, 2014

characteristic: collection date

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Jan 25, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jan 16, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Jan 13, 2014

text: Germany, 1, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: Jul 14, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id


text: Klebsiella pneumoniae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIVERSITY OF COLOGNE

text: public

text: Feb 17, 2014

characteristic: collection date

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Feb 19, 2014

text: Germany, 5, Cologne

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: Mar 3, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: house mouse

characteristic: common name

text: GUT

characteristic: environment (biome)

text: COLON

characteristic: environment (feature)

text: FECES

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: MOUSE

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Mus musculus

text: Indoleamine 2-3 dioxygenase shapes microbiota to reduce IL-22 and promote metabolic disease

characteristic: project name

text: Mus musculus

text: NGS

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SZEGED

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF SZEGED

text: Herpes simplex virus type 1

text: CAP selected mRNAs were isolated, reverse transcribed into cDNA and amplified by specific primers and sequenced using Oxford Nanopore MinIon platform

characteristic: description

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: MinIon CAP


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SZEGED

text: public

characteristic: Submitter Id

text: Herpes simplex virus type 1

characteristic: common name

text: PolyA selected mRNAs were isolated, reverse transcribed into cDNA and amplified by specific primers and sequencied using Oxford Nanopore MinIon platform

text: Human alphaherpesvirus 1

characteristic: organism

text: Human alphaherpesvirus 1

text: MinIon PolyA

characteristic: title


text: UNIVERSITY OF SZEGED

text: public

text: Herpes simplex virus type 1

text: PolyA selected mRNAs were isolated and sequenced using Oxford Nanopore MinIon platform

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: MinIon direct RNA


text: UNIVERSITY OF SZEGED

text: public

text: Herpes simplex virus type 1

text: Ribodepleted mRNAs were isolated, reverse transcribed into cDNA and amplified by random primers and sequenced using Oxford Nanopore MinIon platform

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: MinIon Random


text: NETHERLANDS INSTITUTE OF ECOLOGY

text: public

tag: Namespace:NETHERLANDS INSTITUTE OF ECOLOGY

characteristic: collection date

text: amoA amplicons from ammonia-oxidizing bacteria in a tropical soil amended with vinasse and ammonium nitrate fertilizers

text: agricultural soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: S 22.52'30.2946

characteristic: geographic location (latitude)

text: W 47.4'31.1772

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenomes

text: amoA AOB amplicon metagenomes from tropical soils amended with vinasse and ammonium nitrate

text: metagenomes

text: Illumina MiSeq

text: soil

characteristic: soil environmental package

text: AOB amoA amplicons


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mar 27, 2014

text: Germany, 3, Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: May 5, 2014

characteristic: collection date

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: Jun 2, 2014

text: Germany, 7, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: Jul 14, 2014

text: Germany, 6, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: Jan 17, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

text: public

text: Jan 28, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC first public

text: public

text: Feb 27, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF EXETER

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF EXETER

text: Construct of phage DMS3 carrying anti-crispr protein F1 initially isolated from phage JBD30 (recombined into DMS3)

characteristic: description

text: Pseudomonas virus DMS3

text: Pseudomonas virus DMS3


text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Aug 4, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Mar 20, 2013

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Apr 3, 2013

text: Germany, , Cologne

text: Homo sapiens

text: Yes

characteristic: host associated

text: Blood

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: Feb 17, 2014

text: Germany, 1, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Mar 14, 2014

characteristic: collection date

text: Germany, 2, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: May 26, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: Jan 20, 2014

text: Germany, 1, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Department of Biotechnology and Life Sciences (DBSV), University of Insubria

text: gilthead seabream

characteristic: common name

text: Sparus aurata

text: Sparus aurata

text: Gilthead sea bream gut microbiome


text: Department of Biotechnology and Life Sciences (DBSV), University of Insubria

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: gilthead seabream

text: Sparus aurata

text: Sparus aurata

text: Gilthead sea bream gut microbiome


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

text: Feb 24, 2014

text: Germany, 1, Cologne

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: Mar 1, 2014

text: Germany, , Cologne

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: May 9, 2014

text: Germany, 7, Cologne

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: May 16, 2014

characteristic: collection date

text: Germany, 7, Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: MASSACHUSETTS INSTITUTE OF TECHNOLOGY

text: public

tag: Namespace:MASSACHUSETTS INSTITUTE OF TECHNOLOGY

text: Batch 1 MiSeq 250bp paired-end

characteristic: description

text: ecological community

characteristic: environment (biome)

text: bubble-column reactor

characteristic: environment (feature)

text: activated granular sludge

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Laboratory for Environmental Biotechnology, EPF Lausanne

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: metagenomes

characteristic: organism

text: Within-species diversity drives alternative community types in millimeter scale granular biofilms

characteristic: project name

text: metagenomes

text: Illumina MiSeq

characteristic: sequencing method

text: Single granule from activated granular sludge reactor


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MASSACHUSETTS INSTITUTE OF TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Batch 2 HiSeq 100bp paired-end

text: ecological community

text: bubble-column reactor

text: activated granular sludge

text: Switzerland

text: metagenome

text: metagenomes

text: metagenomes

text: Illumina HiSeq

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: Jan 26, 2014

characteristic: collection date

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: May 18, 2014

text: Germany, , Cologne

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


CTC

characteristic: ENA-FIRST-PUBLIC

text: public

text: CTC

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: The genome of a novel Epsilonproteobacteria. Draft genome reconstructed build from a metagenome sequenced from DNA extracted from the gills of a deep-sea mussel Bathymodiolus childressi.

characteristic: description

text: Cold Seep

characteristic: environment (biome)

text: Mud Volcano

characteristic: environment (feature)

text: Sea water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: uncultured Epsilonproteobacteria bacterium

text: Metagenomes and Metatranscriptomes of Bathymodiolus childressi

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Candidatus Thiobarba childressi


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Mar 5, 2014

characteristic: collection date

text: Germany, , Cologne

characteristic: country

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: Feb 19, 2014

text: Germany, 5, Cologne

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium