characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Not provided

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Occasionally (1-2 times/week)

text: Not provided

text: Yes

text: true

text: false

text: true

text: false

text: true

text: true

characteristic: allergic to i have no food allergies that i know of

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: false

text: Not provided

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Overweight

text: UBERON:skin

text: UBERON:sebum

text: UBERON:skin of hand

text: Two

text: false

text: Not provided

text: Not provided

text: I do not have this condition

text: true

text: I do not have this condition

text: West

text: Yes

text: May

text: Spring

text: 2014-05-20 14:15

text: Not sure

text: Yes, I use a hormonal IUD (Mirena)

text: Rarely (a few times/month)

text: USA

text: United States

text: Not provided

text: Not sure

text: I use an antiperspirant

text: I do not have this condition

text: American Gut Project Right Hand Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: true

text: I am right handed

text: City

text: Not provided

text: Southwest

text: dense settlement biome

text: human-associated habitat

text: human-skin

text: sebum

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Both

text: Primarily infant formula

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:AZ

text: No

text: true

text: centimeters

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: human

text: f4fd93ea4dcdd070aa2c3a018f7745911135b135806225fb0a5f90e6dc85e6934672679fb0bf7bc6ab748889dc864059ec7c2471d31849d7828a22b22d88a73a

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: false

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Self-diagnosed

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: false

text: false

text: Not provided

text: false

text: false

text: true

text: false

text: false

text: false

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human skin metagenome

text: false

text: Not provided

text: UCSDMI

text: true

text: I do not have this condition

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: false

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: true

text: Caucasian

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: Not provided

text: Regularly (3-5 times/week)

text: Right Hand

text: human skin metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 5-6 hours

text: Never

text: Yes

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: AZ

text: True

text: True

text: True

text: True

text: True

text: True

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: American Gut Project

text: false

text: More than 30

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Not provided

text: Not provided

text: Never

text: Never

text: Not provided

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Not provided

text: false

text: false

text: I do not have this condition

text: true

text: Occasionally (1-2 times/week)

text: Not provided

text: Yes

text: true

text: false

text: true

text: false

text: true

text: true

text: Not provided

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

text: I have not taken antibiotics in the past year.

text: false

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: Overweight

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: I tend to have normal formed stool - Type 3 and 4

text: false

text: Not provided

characteristic: cancer

text: Not provided

characteristic: cancer treatment

text: I do not have this condition

text: true

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: West

text: Yes

characteristic: chickenpox

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: clinical condition

characteristic: collection date

text: May

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2014-05-20 14:15

text: Not sure

text: Yes, I use a hormonal IUD (Mirena)

characteristic: contraceptive

text: Rarely (a few times/month)

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Not provided

text: Not sure

text: I use an antiperspirant

text: I do not have this condition

text: American Gut Project Stool Sample

text: I do not have this condition

text: Not provided

text: Omnivore

text: true

text: true

text: I am right handed

text: City

text: Not provided

text: Southwest

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Both

text: Primarily infant formula

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: I have not gotten the flu vaccine in the past year.

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:AZ

text: No

text: true

text: centimeters

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: human

text: I do not have this condition

text: Not provided

text: Not provided

text: I do not have this condition

text: I do not have this condition

text: false

text: I have lived in my current state of residence for more than a year.

text: I have not been outside of my country of residence in the past year.

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: false

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Self-diagnosed

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: false

text: false

text: Not provided

text: false

text: false

text: true

text: false

text: false

text: false

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human gut metagenome

text: false

text: Not provided

text: UCSDMI

text: true

text: I do not have this condition

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: false

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: true

text: Caucasian

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: Not provided

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 5-6 hours

text: Never

text: Yes

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: AZ

text: True

text: True

text: True

text: True

text: True

text: True

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: American Gut Project

text: false

text: More than 30

text: Regularly (3-5 times/week)

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

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text: Not provided

text: Never

text: Never

text: Not provided

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: American Gut control

characteristic: description

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

text: metagenome

characteristic: organism

text: UCSDMI

text: true

characteristic: public

text: control blank

characteristic: sample type

text: metagenome

characteristic: title

text: American Gut Project


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: American Gut control

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: metagenome

text: UCSDMI

text: true

text: control blank

text: metagenome

text: American Gut Project


text: HANYANG UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HANYANG UNIVERSITY

characteristic: Submitter Id

text: metagenome

text: metagenome

text: Kwangyang bay ocean microbiome

type: has member


text: UC SANTA CRUZ

text: public

tag: Namespace:UC SANTA CRUZ

text: roundworm

characteristic: common name

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: UC SANTA CRUZ

text: public

text: N2_A15_USD16081291_HG2G3ALXX_L8_1.fastq.gz

text: roundworm

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: UC SANTA CRUZ

text: public

text: N2_A15_USD16081291_HG2G3ALXX_L8_2.fastq.gz

text: roundworm

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

tag: Namespace:NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: Bacterial communities associated with butterflies

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Danaus chrysippus (Larva 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Danaus chrysippus (Larva 2)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Danaus chrysippus (Larva 3)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

text: EnvO

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Danaus chrysippus (Larva 4)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Danaus chrysippus (Larva 5)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Danaus chrysippus (Adult 1)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Danaus chrysippus (Adult 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Danaus chrysippus (Adult 3)


Echinochloa crus-galli

text: ZHEJIANG UNIVERSITY, CHINA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Echinochloa crus-galli

tag: Namespace:ZHEJIANG UNIVERSITY, CHINA

characteristic: Submitter Id

characteristic: collection date

characteristic: estimated size

text: China

text: 30°17’ N

text: 119°57’ E

text: normal

characteristic: isolation and growth condition

characteristic: number of replicons

text: Echinochloa crus-galli

text: seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: hexaploid

characteristic: ploidy

text: Echinochloa crus-galli

text: crus-galli


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: subject id

characteristic: title


text: Salmonella enterica subsp. enterica serovar Typhi

text: Salmonella

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id


text: Salmonella

text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Salmonella

text: SC

text: public


text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: Salmonella

text: SC

text: public


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: phyllosphere metagenome

characteristic: project name

text: phyllosphere metagenome

text: Illumina

characteristic: sequencing method

text: Calotropis gigantea 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: phyllosphere metagenome

characteristic: organism

text: phyllosphere metagenome

text: Illumina

text: Calotropis gigantea 2

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: phyllosphere metagenome

text: phyllosphere metagenome

text: Illumina

text: Dypsis lutescens 1


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: phyllosphere metagenome

text: phyllosphere metagenome

text: Illumina

text: Dypsis lutescens 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: phyllosphere metagenome

characteristic: project name

text: phyllosphere metagenome

text: Illumina

characteristic: sequencing method

text: Citrus sp. 1


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: phyllosphere metagenome

characteristic: organism

text: phyllosphere metagenome

text: Illumina

text: Citrus sp.2

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: phyllosphere metagenome

text: phyllosphere metagenome

text: Illumina

text: Hibiscus sp. 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: phyllosphere metagenome

text: phyllosphere metagenome

text: Illumina

text: Ricinus communis 1


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: Klebsiella pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id


text: female

characteristic: ArrayExpress-SEX

text: Homo sapiens

text: SC

text: public

text: human

text: Female

characteristic: gender

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Human

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MEDICAL UNIVERSITY GRAZ

text: public

tag: Namespace:MEDICAL UNIVERSITY GRAZ

characteristic: collection date

text: human

text: Negative control 1

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Negative control 2

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MEDICAL UNIVERSITY GRAZ

text: public

characteristic: collection date

text: human

text: Sample 1

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

text: human

text: Sample 2

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 3

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 4

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 5

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 6

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 7

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 8

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 9

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 10

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 11

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 12

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 13

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 14

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 15

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 16

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 17

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 18

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 19

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 20

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 21

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 22

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 23

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 24

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 25

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 26

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 27

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC center name

text: public

characteristic: collection date

text: human

text: Sample 28

characteristic: description

text: gastric biopsy

characteristic: environment (biome)

text: lumen

characteristic: environment (feature)

text: biopsy

text: Austria

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDICAL UNIVERSITY GRAZ

text: public

text: human

text: Sample 29

text: gastric biopsy

text: lumen

text: biopsy

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Homo sapiens

text: The human gastric microbiome

characteristic: project name

text: Homo sapiens

text: pyrosequencing

characteristic: sequencing method

text: Human gastric microbiome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MEDICAL UNIVERSITY GRAZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Sample 30

text: gastric biopsy

text: lumen

text: biopsy

text: Austria

text: human-gut

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: The human gastric microbiome

text: Homo sapiens

text: pyrosequencing

text: Human gastric microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KFU-TU

characteristic: INSDC center name

text: public

text: Seed endosphere of barley (Hordeum vulgare L, cv. Montoya, from company Ackermann, harvest year 2016

characteristic: description

text: metagenome

characteristic: organism

text: metagenome

text: Montoya seed endosphere 16S library

characteristic: title


text: KFU-TU

text: public

text: Seed endosphere of barley (Hordeum vulgare L, cv. Montoya, from Inst. of Crop Science - JLU Giessen, harvest year 2015

text: metagenome

text: metagenome

text: Montoya seed endosphere 16S library


text: KFU-TU

text: public

text: Seed endosphere of barley (Hordeum vulgare L, cv. Morex, from Inst. of Plant Breeding - JLU Giessen, harvest year 2012

text: metagenome

text: metagenome

text: Morex seed endosphere 16S library


text: KFU-TU

text: public

text: Seed endosphere of barley (Hordeum vulgare L, cv. Overture, from Inst. of Crop Science - JLU Giessen, harvest year 2015

text: metagenome

text: metagenome

text: Overture seed endosphere 16S library


text: KFU-TU

text: public

text: Seed endosphere of barley (Hordeum vulgare L, cv. Overture, from company Limagrain, harvest year 2016

text: metagenome

text: metagenome

text: Overture seed endosphere 16S library


text: KFU-TU

text: public

text: Seed endosphere of barley (Hordeum vulgare L, cv. Propino, from company Syngenta, harvest year 2013

text: metagenome

text: metagenome

text: Propino seed endosphere 16S library


text: KFU-TU

text: public

text: Washed seed of barley (Hordeum vulgare L, cv. Morex, from Inst. of Plant Breeding - JLU Giessen, harvest year 2012

text: metagenome

text: metagenome

text: Morex seed 16S library


Einheitserde

text: KFU-TU

text: public

text: Einheitserde

text: Soil used as substrate for the greenhouse experiment, before planting

text: metagenome

text: metagenome

text: Greenhouse substrate 16S library


Unterboden

text: KFU-TU

text: public

text: Unterboden

text: metagenome

text: metagenome

text: Greenhouse substrate 16S library


text: NETHERLANDS INSTITUTE OF ECOLOGY

text: public

tag: Namespace:NETHERLANDS INSTITUTE OF ECOLOGY

characteristic: collection date

text: area of cropland

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: Impact of domestication of common bean on rhizobacterial community assembly

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CENTRAL CHINA NORMAL UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CENTRAL CHINA NORMAL UNIVERSITY

characteristic: Submitter Id

text: uncultured bacterium

text: uncultured bacterium

text: YJNB


characteristic: ENA-FIRST-PUBLIC

text: CENTRAL CHINA NORMAL UNIVERSITY

characteristic: INSDC center name

text: public

text: uncultured fungus

characteristic: organism

text: uncultured fungus

text: YJNF

characteristic: title


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

tag: Namespace:NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Gallus gallus domesticus

characteristic: host scientific name

characteristic: isolate

text: Chicken

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Gallinarum

text: Isolate of Salmonella Pullorum from Chicken


Human cytomegalovirus1b1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UCL

text: public

text: Human cytomegalovirus1b1

text: University College London

characteristic: collecting institution

text: Charlotte J. Houldcroft

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Human cytomegalovirus (HCMV) sequences derived from residual diagnostic samples. All samples were positive for HCMV DNA by quantitative PCR. Samples were collected as part of standard clinical care and supplied anonymously between 2010-2016.

characteristic: description

text: United Kingdom

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

characteristic: host subject id

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: Human cytomegalovirus sequences derived from residual diagnostic samples

characteristic: virus identifier


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: WELLCOME TRUST SANGER INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WELLCOME TRUST SANGER INSTITUTE

characteristic: Submitter Id

text: Escherichia coli

characteristic: organism

text: Escherichia coli

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: Streptococcus anginosus

text: Streptococcus anginosus


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: Lactobacillus iners

text: Lactobacillus iners


text: WELLCOME TRUST SANGER INSTITUTE

text: public

text: Lactobacillus crispatus

text: Lactobacillus crispatus


text: NTNU

text: public

characteristic: Latitude End

characteristic: Longitude End

characteristic: depth

text: Different oil incubations in natural sea-water.

characteristic: description

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: seawater metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

unit: practical salinity unit

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

characteristic: sampling site

text: seawater metagenome

unit: ºC

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUT PASTEUR

characteristic: Submitter Id

characteristic: collection date

text: Bacterial culture

text: France

characteristic: geographic location (country and/or sea)

text: Brives-Charensac

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: pseudomembrane

characteristic: isolation source

text: diphtheria Nat. Ref. Center, Institut Pasteur, Paris

characteristic: lab host

text: Corynebacterium diphtheriae

characteristic: organism

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

text: Bacterial culture

characteristic: description

text: France

text: not provided

text: Homo sapiens

text: expectoration

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bacterial culture

text: France

text: Dijon

text: not provided

text: Homo sapiens

text: expectoration

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

text: public

characteristic: Submitter Id

characteristic: collection date

text: Bacterial culture

text: France

characteristic: geographic location (country and/or sea)

text: Coquelles

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

text: sinus

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: nasal swab

characteristic: isolation source

characteristic: lab host

text: Corynebacterium diphtheriae

characteristic: organism

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

text: Strasbourg

text: not provided

text: Homo sapiens

text: bronchoalveolar wash

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain

characteristic: title


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial culture

characteristic: description

text: France

text: Lisieux

text: not provided

text: Homo sapiens

text: expectoration

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Bacterial culture

text: France

characteristic: geographic location (country and/or sea)

text: Creil

characteristic: geographic location (region and locality)

text: diseased

text: Homo sapiens

text: cutaneous

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

text: Rennes

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound

characteristic: isolation source

characteristic: lab host

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

text: Saint Denis, La Reunion

text: not provided

text: Homo sapiens

text: wound

text: Corynebacterium diphtheriae

characteristic: organism

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial culture

text: France

text: Vaires sur Marne

text: not provided

text: Homo sapiens

text: purulent scalp skin injury

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain

characteristic: title


text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Bacterial culture

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: Paris

text: not provided

text: Homo sapiens

text: left ankle wound

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

text: Le Chesnay

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound

characteristic: isolation source

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

text: Mamoudzou

text: not provided

text: Homo sapiens

text: burn

characteristic: lab host

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacterial culture

text: France

text: Colmar

text: not provided

text: Homo sapiens

text: wound

text: Corynebacterium diphtheriae

characteristic: organism

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


text: INSTITUT PASTEUR

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Bacterial culture

characteristic: description

text: France

text: Mamoudzou

text: diseased

text: Homo sapiens

text: genital injury

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain

characteristic: title


text: INSTITUT PASTEUR

text: public

text: Bacterial culture

text: France

characteristic: geographic location (country and/or sea)

text: Bron

characteristic: geographic location (region and locality)

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: ulceration on leg

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae

text: Corynebacterium diphtheriae strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: Bacterial communities associated with butterflies

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Papilio polytes(Larva 1)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Papilio polytes(Larva 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Papilio polytes (Larva 3)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Papilio polytes(Pupa 1)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Papilio polytes (Pupa 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Papilio polytes (Pupa 3)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Papilio polytes (Adult 1)


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

text: EnvO

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method


text: Institute of Medical Biology

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-5959:GATA6Het_Day3_GATA6_rep1.bam

tag: Namespace:Institute of Medical Biology

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: human

text: Protocols: hPSCs were routinely cultured in feeder-free conditions on vitronectin-coated (Stemcell Technologies #07180) sterile plates (Corning, Costar) with Essential 8 (E8) media (Life Technologies #A1517001). Subculture was performed every 4-6 days by aspirating the cell culture media, washing the cells once with D-PBS, incubating them in 0.5 mM EDTA (Invitrogen, #15575020) for 5 min at room temperature, aspirating the EDTA and adding appropriate volumes of fresh E8 media (Table 2) to the cells. hPSCs were further physically detached from the plates by gentle pipetting, collected in a 15 ml Falcon tube (BD Falcon) and allowed to settle for 10 min. The supernatant was aspirated and hPSCs were re-suspended in fresh E8 media, and then dissociated into smaller clumps by gentle pipetting. The cells were split at a split ratio of 1:6 and plated onto fresh vitronectin-coated plates containing appropriate volumes of media. Cells were maintained by refreshing E8 media on a daily basis. Co-binding of DNA to DNA-binding proteins was determined by ChIP against GATA6 (Cell Signaling, #5851) on approximately 1 x 107 cells per antibody or control sample. hPSCs grown on 10 cm dishes were differentiated and harvested at the endoderm (D3) stage. 1 x 10 cm dish of cells harvested at D3 was used for one antibody immunoprecipitation (IP). Cells were cross-linked by adding 312.5 µl of 16% formaldehyde (ThermoFisher UK, #11586711) to 5 ml of media to make a final concentration of 1%. The cells were incubated rocking for 10 min at room temperature to allow cross-linking of protein-DNA complexes. The reaction was quenched by adding 312.5 µl of 2 M glycine (Millipore, #357002) to make a final concentration of 0.125 M and incubated for 5 min with rocking. Thereafter, the media was aspirated and cells were washed twice with 5 ml of ice-cold PBS. The cells were detached by scraping into 3 ml of ice-cold PBS containing freshly-added protease inhibitors (10 µl/ml of 5 mg/ml phenylmethylsulfonylfluoride (PMSF; Sigma-Aldrich, #93482), 10 µl/ml of 1 M Sodium Butyrate (Sigma-Aldrich, #303410) and 1 µl/ml of 1 mg/ml Leupeptin (Roche, #11017101001)) and pooled into 15 ml tubes, each tube containing approximately 2 x 107 cells, or 2 IPs. The cells were then centrifuged for 5 min at 1,200 rpm at 4°C to pellet. For all subsequent steps, the samples were kept on ice. For all subsequent buffers used, the aforementioned protease inhibitors were added freshly to the buffers before use. The pelleted cells were subsequently re-suspended in 2 ml of ice-cold Cell Lysis Buffer (10 mM Tris-Cl pH 8.0, 10 mM NaCl and 0.2% NP-40) per 15 ml tube and incubated on ice for 10 min. The cells were then centrifuged for 5 min at 1,800 rpm at 4°C. The supernatant was discarded and the pellet was gently re-suspended in 1.25 ml of ice-cold Nuclear Lysis Buffer (50 mM Tris-Cl pH 8.0, 10 mM EDTA and 1% SDS) per 15 ml tube and incubated on ice for 10 min. 0.75 ml of ice-cold IP Dilution Buffer (20 mM Tris-Cl pH 8.0, 2 mM EDTA, 150 mM NaCl, 0.01% SDS, 1% Triton X-100) was then added per 15 ml tube. The chromatin was then transferred into 15 ml Diagenode sonication tubes containing sonication beads (Diagenode, #C01020031) that were pre-washed twice with 10 ml D-PBS each time and once with 10 ml IP Dilution Buffer. Next, chromatin was sonicated in Diagenode Biorupter Pico for 10 cycles of 30s on/45s off. The sonicated chromatin were transferred to 1.5 ml tubes and centrifuged at 14,000 rpm for 10 min at 4°C to pellet debris. The pellet was discarded, and two 15 ml tubes, or 4 IPs, worth of sonicated chromatin was pooled into a fresh 15 ml tube. 3.5 ml of IP Dilution Buffer was added and mixed gently. The cross-linked DNA was pre-cleared by incubating with rotation 10 μg of rabbit IgG (Sigma-Aldrich, #I5006) for 1 hr at 4°C, followed by incubating with rotation 100 µl of Protein G agarose beads (50% v/v; Roche, #11243233001) pre-washed twice with D-PBS for 1 hr at 4°C. The samples were then centrifuged for 3 min at 3,000 rpm at 4°C and the supernatant was transferred to a fresh 15 ml tube. An aliquot of 300 µl for Input sample was transferred to a fresh 1.5 ml Eppendorf tube and stored at 4°C. The supernatant was split equally into four 15 ml tubes, each representing one sample i.e. 1 x 107 cells worth of material per tube. 10 μg of GATA6 antibody (Cell Signaling, #5851) or rabbit IgG (Sigma-Aldrich, #I5006) control was added per tube, and samples were incubated rotating overnight at 4°C. Antibody-bound chromatin was then collected using 60 µl of Protein G agarose beads (50% v/v) pre-washed twice with D-PBS for each tube by incubating with rotation for 1 hr at 4°C. Thereafter, the tubes were centrifuged for 3 min at 3,000 rpm at 4°C. The supernatant was discarded and the pellet containing the protein-DNA complexes bound onto the protein G agarose beads were kept. 500 µl of IP Wash Buffer 1 (20 mM Tris-Cl pH 8.0, 2 mM EDTA, 50 mM NaCl, 0.1% SDS and 1% Triton X-100) was added to each tube and the tubes were vortexed. The samples were transferred to fresh 1.5 ml Eppendorf tubes and were then centrifuged at 14,000 rpm for 1 min at 4°C. The samples were washed with IP Wash Buffer 1 once more by removing the supernatant, adding 500 µl of IP Wash Buffer 1, vortexing, and centrifuging at 14,000 rpm for 1 min at 4°C. 500 µl of IP Wash Buffer 2 (10 mM Tris-Cl pH 8.0, 1 mM EDTA, 0.25 M LiCl, 1% NP-40 and 1% Sodium deoxycholic acid) was then added to each tube after removing the supernatant and the tubes were vortexed and centrifuged at 14,000 rpm for 1 min at 4°C. The wash was repeated once more. Thereafter, the samples were washed twice with 500 µl of TE Buffer (10mM Tris-Cl pH 8.0, 1mM EDTA) according to the procedures above. After the supernatant was aspirated, the chromatin was eluted from the Protein G beads by washing twice with 150 µl of Elution Buffer (100 mM NaHCO3 and 1% SDS), vortexing and centrifuging at 14,000 rpm for 1 min at 4°C. The supernatants were collected and pooled in fresh 1.5 ml Eppendorf tubes. ChIP and Input DNA cross-links were reversed and RNA degraded by adding 1 μl of 1 mg/ml RNase A and 18 μl of 5M NaCl and incubating at 67°C in a heat block with shaking at 1,300 rpm overnight. Protein was degraded by adding 3 μl of 20 mg/ml Proteinase K and incubating for 3 hrs at 45°C in a heat block with shaking at 1,300 rpm. DNA was extracted using 300 µl of phenol/chloroform wash with vortexing then centrifuged at 14,000 rpm for 5 min at room temperature. The aqueous layer containing pulled down genomic DNA was transferred to fresh 1.5 ml Eppendorf tubes. 30 μl of 3M NaAc pH 5.2 (Ambion, #AM9740), 30 μg glycoblue (Ambion, #AM9516) and 750 μl of 100% ethanol were added to the samples, which were then vortexed. The samples were next incubated for at least 30 min at -80°C to precipitate the DNA. Precipitated DNA was pelleted by centrifuging at 14,000 rpm for 30 min at 4°C. The DNA pellet was then washed with ice-cold 70% ethanol and centrifuged at 14,000 rpm for 5 min at 4°C. The ethanol was removed and the pellet air dried. 70 µl of deionised water was added to Input samples whereas 30 µl of deionised water was added to ChIP samples. Library preparations were made manually using the NEBNext Ultra DNA Library Prep Kit for Illumina.

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text: Homo sapiens

text: Homo sapiens

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text: GATA6 R456C/+

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text: Institute of Medical Biology

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