text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: control participant 98 - nasopharynx swab sample


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Antwerp

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Antwerp

characteristic: Submitter Id

text: human nasopharyngeal metagenome

characteristic: organism

text: human nasopharyngeal metagenome

text: control participant 98 - nose swab sample

characteristic: title


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: control participant 99 - nasopharynx swab sample


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: control participant 99 - nose swab sample


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: control participant 9 - nasopharynx swab sample


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 10


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 11


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 12


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 13


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 2


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 3


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 4


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 5


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 6


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 7


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 8


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative control DNA extraction kit 9


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 1


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 2


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 3


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 4


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 5


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 6


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 7


text: University of Antwerp

text: public

text: human nasopharyngeal metagenome

text: human nasopharyngeal metagenome

text: Negative PCR control 8


text: Genome Institute of Singapore, A*STAR

text: public

tag: Namespace:Genome Institute of Singapore, A*STAR

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Isolation of E12.5 mouse embryonic lung progenitors: E12.5 mouse embryos were collected from pregnant Sox9GFP females. E12.5 embryonic lungs were carefully dissected with tungsten forceps. The heart and esophagus were carefully removed and lungs were pooled (typically 7 to 9 lungs per litter). E12.5 lungs were incubated in 5 mL of dissociation buffer (Collagenase I 100U/mL, Collagenase II 100U/mL, DNAse 100U/mL and Trypsin 50U/mL in phenol red-free Leibovitz L-15 basal media) for 20 minutes with frequent trituration until the embryonic lungs were fully dissociated. Dissociated cells were washed with an equal volume of collection buffer (20% serum in Leibovitz L-15) and filtered through a 100 µm cell strainer. Cells were then centrifuged for 10 minutes at 2000 rpm (4 oC). The pellet was re-suspended in pre-warmed (37 oC) suspension buffer (2% serum, HEPES 25 mM, EDTA 2 mM in Leibovitz L-15) and filtered again through a 40 µm cell strainer. After washing in FACS buffer (2%Serum + 0.2% bovine serum albumin [BSA] in Leibovitz L-15) and centrifugation for 5 minutes at 2000 rpm (4 oC), cells were blocked for 10 minutes at room temperature (RT) in FACS buffer before 30 mins of incubation with anti-Cdh1, anti-Pecam1/CD31, anti-Ptprc/CD45 and anti-Ter119 eFluor-conjugated primary antibodies at 4oC. For adult lung samples, anti-Cdh1 or anti-EpCAM antibodies were used only. After antibody incubation, cells were washed in FACS buffer and pelleted before being resuspended in 500 µL of suspension buffer + DAPI (0.1 µg/mL). Sorting was performed on a BD FACS Aria II cytometer. Relevant cell fractions were collected and followed by RNA extraction. Primary Sox9+ lung progenitor cell culture and expansion: Typically, 1000 Sox9GFP+Cdh1+Pecam1-Ptprc-Ter119- sorted cells were embedded in 40 µL of Growth Factor Reduced, Phenol Red-Free Matrigel (10mg/mL, Corning #356231), re-suspended on ice and seeded as a single droplet in 24-well plates. The cell-containing Matrigel droplet was allowed to solidify for 20 minutes at 37 oC before 500 µL of LPM-3D media (Fgf10 50ng/ml; Fgf9 50ng/ml; Egf 50ng/ml; CHIR99021 3µM; BIRB796 1µM; Y27632 10µM; A8301 1µM; Heparin 5µg/ml; Insulin 10µg/ml; Transferrin 15µg/ml) was added. Full media was changed every 2 days and cells were passaged every 10 to 12 days with a 1:8 to 1:10 split ratio. For passaging, the Matrigel droplet was incubated with a mixture of Dispase II (Thermofisher #17105041), Collagenase IV (Thermofisher #17104019) and Papain (Worthington #LS003118) (0.5 mg/mL each) at 37oC and triturated for 30-60 minutes until the Matrigel was fully digested and colonies were dissociated into single cells. Cells were then washed with DMEM/F12 and centrifuged for 10 minutes at 2000rpm (4 oC); the supernatant was then removed and cells were re-embedded in Matrigel as described above. Sorting was performed on a BD FACS Aria II cytometer. Sox9GFP+ cell fractions were collected and followed by RNA extraction. Smart-Seq2. Total RNAs (1ng) from 1x105 FACS-sorted cells with RIN value >7 were further processed to synthesize cDNAs according to Picelli et al, 2014 Smart-seq2 protocol. cDNAs size distribution and concentration was assessed by Agilent Bioanalyzer using High sensitivity DNA analysis kit (Agilent technologies #5067-4626). Libraries were constructed using the Illumina Nextera XT DNA Sample Preparation kit (Illumina #FC-131-1096). Libraries were quantified by using KAPA Library Quantification Kit (Kapa Biosystems #KK4854) and size distribution was assessed by Agilent Bioanalyzer. RNA-seq libraries were sequenced on Illumina NEXTSeq platform (single-end 76bp).

characteristic: description

text: embryonic day 12.5

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: mixed

characteristic: sex

text: C57BL/6J x 129S4/SvJae

characteristic: strain

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genome Institute of Singapore, A*STAR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: embryonic day 12.5

text: normal

text: Mus musculus

text: Mus musculus

text: lung

characteristic: passage

text: Mus musculus

text: mixed

text: C57BL/6J x 129S4/SvJae


text: Genome Institute of Singapore, A*STAR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: mixed

characteristic: title


text: Genome Institute of Singapore, A*STAR

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: EpCAM+

characteristic: phenotype

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Genome Institute of Singapore, A*STAR

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: EpCAM-

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single E11.5 mouse placenta, heterozygous for Nubpl, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: cDNA library from a single wt E11.5 mouse placenta from heterozygous Nubpl/ C57BL/6N parents, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: cDNA library from a single wt E9.6 mouse yolk sac from Mtor/ C57BL/6N parents, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

tag: Namespace:University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Shigella flexneri 2a

text: Shigella flexneri 2a

text: Shigella flexneri 2a

characteristic: serovar


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ireland

text: Homo sapiens

text: Human

text: Shigella sonnei

text: Shigella sonnei

text: Shigella sonnei


text: KING ABDULAZIZ UNIVERSITY

text: public

characteristic: SRA accession

tag: Namespace:KING ABDULAZIZ UNIVERSITY

characteristic: Submitter Id

text: metagenomes

text: metagenomes

text: Atorvastatin GM


text: UOM

text: public

text: 1 to 2

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: The mice are a targeted knockout (LoxP/Cre) of Lrig2 exon 12 from strain C57BL/6 at up to 24 hours of age. Bladders from mice aged one - two weeks were excised and washed in PBS then fixed whole or opened ventrally (to preserve the pelvic ganglia and trigone) and fixed flat between glass slides in 4 % paraformaldehyde (Sigma) at 4oC for 24 hours. Whole neonatal bladders were homogenized using Biopulveriser Lysing Matrix D beads on a Fast-Prep-24 (MP Biomedicals). RNA was isolated using the Qiagen RNeasy kit. Illumina TruSeq Stranded mRNA Library Prep Kit

characteristic: description

text: Ochoa syndrome

characteristic: disease

text: LRIG2 knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: urinary bladder

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

characteristic: INSDC center name

text: public

text: 1 to 2

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: urinary bladder

text: Mus musculus

text: female


text: UPSC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 0 weeks of short day treatment biological replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

characteristic: common name

text: abi1 mutant after 0 weeks of short day treatment biological replicate 2

characteristic: description

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 0 weeks of short day treatment biological replicate 3

text: Populus tremula x Populus tremuloides

characteristic: organism

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 0 weeks of short day treatment biological replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 0 weeks of short day treatment biological replicate 2 technical replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 0 weeks of short day treatment biological replicate 2 technical replicate 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 0 weeks of short day treatment biological replicate 3

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 6 weeks of short day treatment biological replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 6 weeks of short day treatment biological replicate 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 6 weeks of short day treatment biological replicate 3

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 6 weeks of short day treatment biological replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 6 weeks of short day treatment biological replicate 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 6 weeks of short day treatment biological replicate 3

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 10 weeks of short day treatment biological replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 10 weeks of short day treatment biological replicate 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: abi1 mutant after 10 weeks of short day treatment biological replicate 3

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 10 weeks of short day treatment biological replicate 1 technical replicate 1

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 10 weeks of short day treatment biological replicate 1 technical replicate 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 10 weeks of short day treatment biological replicate 2

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: UPSC

text: public

text: Populus tremula x Populus tremuloides

text: T89 after 10 weeks of short day treatment biological replicate 3

text: Populus tremula x Populus tremuloides

text: Populus tremula x Populus tremuloides


text: KING ABDULAZIZ UNIVERSITY

text: public

text: metagenomes

text: metagenomes

text: Atorvastatin GM


text: ED

text: public

text: study goal: determine degree of hybridization

text: Berwickshire

characteristic: geographic location (region and locality)

text: 55°45_32.21_N/ 002°28_43.98_W

characteristic: lat lon

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°55_13.92_N/ 002°11_29.87_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°55_13.74_N/ 002°20_45.68_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°48_48.07_N/ 002°35_30.28_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°48_12.97_N/ 002°20_30.05_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°48_23.28_N/ 002°30_06.09_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°43_59.74_N/ 002°46_10.80_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°41_34.10_N/ 002°25_04.03_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°47_19.70_N/ 002°21_12.24_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_10.70_N/ 002°24_30.61_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°50_21.93_N/ 002°22_53.91_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°44_28.64_N/ 002°38_33.57_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°54_23.37_N/ 002°10_22.08_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°53_14.06_N/ 002°17_24.90_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°52_48.31_N/ 002°12_25.08_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°44_42.61_N/ 002°38_33.91_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°40_44.39_N/ 002°37_27.14_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_38.64_N/ 002°21_06.79_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°44_09.73_N/ 002°40_25.34_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_51.82_N/ 002°32_54.37_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_46.72_N/ 002°25_01.36_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°48_12.97_N/ 002°20_30.05_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°49_26.54_N/ 002°46_46.78_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°48_48.07_N/ 002°35_30.28_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_01.53_N/ 002°33_59.10_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°52_05.45_N/ 002°25_54.64_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°47_19.70_N/ 002°21_12.24_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°55_13.92_N/ 002°11_29.87_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°41_09.26_N/ 002°33_42.29_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°39_59.73_N/ 002°33_15.31_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_46.67_N/ 002°23_30.15_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°39_10.43_N/ 002°41_50.99_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°41_36.40_N/ 002°42_32.59_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°54_23.37_N/ 002°10_22.08_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_05.55_N/ 002°35_57.70_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°44_09.73_N/ 002°40_25.34_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_38.64_N/ 002°21_06.79_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°44_42.61_N/ 002°38_33.91_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°49_57.38_N/ 002°26_06.32_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_00.02_N/ 002°45_29.21_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_41.00_N/ 002°21_59.39_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°40_44.39_N/ 002°37_27.14_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°51_59.51_N/ 002°25_42.03_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°40_58.23_N/ 002°21_03.75_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_10.70_N/ 002°24_30.61_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°48_23.28_N/ 002°30_06.09_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_32.21_N/ 002°28_43.98_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°47_24.57_N/ 002°43_31.04_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°41_09.26_N/ 002°33_42.29_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°43_09.71_N/ 002°41_37.32_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°46_34.73_N/ 002°47_05.62_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°47_19.70_N/ 002°21_12.24_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°52_05.45_N/ 002°25_54.64_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°44_28.64_N/ 002°38_33.57_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°53_14.06_N/ 002°17_24.90_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°43_59.74_N/ 002°46_10.80_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°49_26.54_N/ 002°46_46.78_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_41.00_N/ 002°21_59.39_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°45_01.53_N/ 002°33_59.10_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_46.67_N/ 002°23_30.15_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_46.72_N/ 002°25_01.36_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°39_59.73_N/ 002°33_15.31_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°40_44.39_N/ 002°37_27.14_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°49_57.38_N/ 002°26_06.32_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°55_03.85_N/ 002°15_55.46_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°50_21.93_N/ 002°22_53.91_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°39_10.43_N/ 002°41_50.99_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°51_59.51_N/ 002°25_42.03_W

text: Geum rivale

text: Geum rivale


text: ED

text: public

text: Berwickshire

text: 55°42_51.82_N/ 002°32_54.37_W

text: Geum rivale

text: Geum rivale


text: public

tag: Namespace:Universidad Nacional Mayor de San Marcos

characteristic: collection date

text: Microbial psychrotolerant consortia leaching of metal sulfides.

text: Acid mine drainage

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Air

characteristic: environment (material)

text: Peru

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

text: 18L 0359205

unit: DD

characteristic: geographic location (latitude)

text: UTM 8816929

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ACGAGTGCGT

characteristic: multiplex identifiers

text: bioreactor metagenome

text: 27f ‘GAGTTTGATCMTGGCTCAG’ and 518r ‘WTTACCGCGGCTGCTGG’

characteristic: pcr primers

characteristic: ph

text: Metagenome analysis of microbial psychrotolerant consortia leaching of metal sulfides at low temperatures

characteristic: project name

text: bioreactor metagenome

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: QF1 Microbial psychrotolerant consortia leaching of metal sulfides

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad Nacional Mayor de San Marcos

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: Acid mine drainage

text: Lake

text: Air

text: Peru

text: 18L 0359944

text: UTM 8816571

text: metagenome

text: ACGCTCGACA

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: Pyrosequencing

text: 16S rRNA

text: QF3 Microbial psychrotolerant consortia leaching of metal sulfides.

characteristic: title

text: water


text: public

characteristic: collection date

text: Acid mine drainage

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Air

characteristic: environment (material)

text: Peru

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 18L 0359944

characteristic: geographic location (latitude)

text: UTM 8816571

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: AGACGCACTC

characteristic: multiplex identifiers

text: bioreactor metagenome

characteristic: pcr primers

characteristic: ph

characteristic: project name

text: bioreactor metagenome

text: Pyrosequencing

text: 16S rRNA

text: QS3 Microbial psychrotolerant consortia leaching of metal sulfides.

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acid mine drainage

text: Lake

text: Air

text: Peru

text: 18L 0361015

text: UTM 8817512

text: metagenome

text: AGCACTGTAG

text: bioreactor metagenome

text: bioreactor metagenome

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: QF4 Microbial psychrotolerant consortia leaching of metal sulfides.

text: water

characteristic: water environmental package


text: public

characteristic: collection date

characteristic: description

text: Acid mine drainage

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Air

characteristic: environment (material)

text: Peru

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 18L 0360819

characteristic: geographic location (latitude)

text: UTM 8817645

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: ATCAGACACG

characteristic: multiplex identifiers

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: Pyrosequencing

text: 16S rRNA

text: QF5 Microbial psychrotolerant consortia leaching of metal sulfides.

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acid mine drainage

text: Lake

text: Air

text: Peru

text: 18L 0361504

text: UTM 8819121

text: metagenome

text: ATATCGCGAG

text: bioreactor metagenome

characteristic: pcr primers

characteristic: ph

characteristic: project name

text: bioreactor metagenome

text: Pyrosequencing

text: 16S rRNA

text: SBF1 Microbial psychrotolerant consortia leaching of metal sulfides.

text: water


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: public

tag: Namespace:Institute of Environmental Science and Research

characteristic: collection date

text: New Zealand

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood

characteristic: isolation source

text: Neisseria meningitidis serogroup B

characteristic: organism

text: Neisseria meningitidis serogroup B

characteristic: st-rain

text: NZ Household contact meningococci

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Environmental Science and Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: New Zealand

text: diseased

text: Homo sapiens

text: Cerebrospinal fluid

text: Neisseria meningitidis serogroup B

text: Neisseria meningitidis serogroup B

text: NZ Household contact meningococci


text: public

characteristic: Submitter Id

characteristic: collection date

text: New Zealand

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Blood

text: Neisseria meningitidis serogroup B

text: Neisseria meningitidis serogroup B

text: NZ Household contact meningococci


text: public

text: New Zealand

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Throat

text: Neisseria meningitidis serogroup B

text: Neisseria meningitidis serogroup B

text: NZ Household contact meningococci


text: public

text: New Zealand

text: healthy

text: Homo sapiens

text: Throat

characteristic: isolation source

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: st-rain

text: NZ Household contact meningococci


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Forensic and Scientific Services

text: public

tag: Namespace:Forensic and Scientific Services

text: iGAS cluster

characteristic: description

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: iGAS cluster

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: log phase

characteristic: dev stage

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum ATCC 25586

characteristic: strain


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: stationary phase

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum ATCC 25586


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: log phase

text: Treponema denticola

text: Treponema denticola

text: Treponema denticola ATCC 35405


text: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

text: public

text: stationary phase

text: Treponema denticola

text: Treponema denticola

text: Treponema denticola ATCC 35405


text: John Innes Centre

text: public

tag: Namespace:John Innes Centre

text: bread wheat

characteristic: common name

text: Chinese Spring

characteristic: cultivar

text: RenSeq cDNA leaves of 3 leaf stage

text: three leaf stage

text: Chinese Spring

characteristic: genotype

text: Triticum aestivum

text: leaves

characteristic: organism part

characteristic: replicate

text: Triticum aestivum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: John Innes Centre

text: public

text: bread wheat

text: Chinese Spring

text: RenSeq cDNA head

characteristic: description

text: heading (before flowering)

text: Chinese Spring

text: Triticum aestivum

characteristic: organism

text: spike

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: John Innes Centre

characteristic: INSDC center name

text: public

text: bread wheat

text: Chinese Spring

text: RenSeq cDNA stem

text: milk grain stage

text: Chinese Spring

text: Triticum aestivum

text: Stem

text: Triticum aestivum

characteristic: title


text: John Innes Centre

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: bread wheat

text: Chinese Spring

text: RenSeq cDNA leaves of 7 leaf stage

text: seven leaf stage

characteristic: dev stage

text: Chinese Spring

text: Triticum aestivum

text: leaves

text: Triticum aestivum


text: John Innes Centre

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: bread wheat

text: Chinese Spring

text: RenSeq cDNA flag leaf

text: milk grain stage

text: Chinese Spring

text: Triticum aestivum

text: flag leaf

text: Triticum aestivum


text: John Innes Centre

text: public

text: bread wheat

characteristic: common name

text: Chinese Spring

characteristic: cultivar

text: RenSeq cDNA root

text: three leaf stage

text: Chinese Spring

characteristic: genotype

text: Triticum aestivum

text: roots

text: Triticum aestivum


characteristic: ENA-CHECKLIST

text: John Innes Centre

text: public

text: bread wheat

text: Chinese Spring

text: RenSeq cDNA seed

text: milk grain stage

text: Chinese Spring

text: Triticum aestivum

text: grain

characteristic: organism part

characteristic: replicate

text: Triticum aestivum


characteristic: ENA-FIRST-PUBLIC

text: John Innes Centre

text: public

text: bread wheat

text: Chinese Spring

text: Total cDNA leaves of 3 leaf stage

characteristic: description

text: three leaf stage

text: Chinese Spring

text: Triticum aestivum

characteristic: organism

text: leaves

text: Triticum aestivum


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_2026_PRJ1084_Salmonella_Livingstone_2011_60_2395_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2027_PRJ1084_Salmonella_Livingstone_2011_60_2606_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2016_2028_PRJ1084_Salmonella_Livingstone_2012_60_457_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2029_PRJ1084_Salmonella_Livingstone_2014_60_15_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2030_PRJ1084_Salmonella_Livingstone_2014_60_530_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2031_PRJ1084_Salmonella_ParatyphiBvar.Java_F15_1026_5

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2032_PRJ1084_Salmonella_ParatyphiBvar.Java_F14_868_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: poultry

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2033_PRJ1084_Salmonella_ParatyphiBvar.Java_F14_601_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2034_PRJ1084_Salmonella_ParatyphiBvar.Java_2010_60_421_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2035_PRJ1084_Salmonella_ParatyphiBvar.Java_2011_60_1141_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: poultry

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2036_PRJ1084_Salmonella_ParatyphiBvar.Java_2013_60_1400_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2049_PRJ1084_Salmonella_Newport_F15_725_7

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2050_PRJ1084_Salmonella_Newport_2010_60_2837_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: cattle

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2051_PRJ1084_Salmonella_Newport_2010_60_304_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2052_PRJ1084_Salmonella_Newport_2010_60_337_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2053_PRJ1084_Salmonella_Newport_2010_60_4956_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: cattle

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2054_PRJ1084_Salmonella_Newport_2011_60_1703_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2055_PRJ1084_Salmonella_Newport_2012_60_1065_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2056_PRJ1084_Salmonella_Newport_2012_60_429_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: cattle

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2057_PRJ1084_Salmonella_Newport_2013_60_1984_5

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2058_PRJ1084_Salmonella_Enteritidis_F15_698_6

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2059_PRJ1084_Salmonella_Enteritidis_F15_873_4

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: poultry

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2060_PRJ1084_Salmonella_Enteritidis_F14_1019_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2061_PRJ1084_Salmonella_Enteritidis_2010_60_2136_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2062_PRJ1084_Salmonella_Enteritidis_2011_60_3051_1

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: poultry

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2063_PRJ1084_Salmonella_Enteritidis_2011_60_776_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2064_PRJ1084_Salmonella_Enteritidis_2012_60_1918_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2065_PRJ1084_Salmonella_Enteritidis_2010_60_165_2

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: poultry

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2066_PRJ1084_Salmonella_Enteritidis_2011_60_1840_1

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2067_PRJ1084_Salmonella_Enteritidis_2014_60_192_1

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: poultry

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2068_PRJ1084_Salmonella_Dublin_14_11880_5_R2.fastq.gz

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: cattle

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2069_PRJ1084_Salmonella_Dublin_14_7024_4_R2.fastq.gz

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2070_PRJ1084_Salmonella_Dublin_14_9581_1_R2.fastq.gz

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2071_PRJ1084_Salmonella_Dublin_2010_10_1354_1_R2.fastq.gz

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: cattle

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2072_PRJ1084_Salmonella_Dublin_2010_10_1810_1_R2.fastq.gz

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2073_PRJ1084_Salmonella_Dublin_2011_10_637_2_R2.fastq.gz

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2074_PRJ1084_Salmonella_Dublin_2011_60_1140_1_R2.fastq.gz

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: cattle

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2075_PRJ1084_Salmonella_Dublin_2013_10_1794_2_R2.fastq.gz

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2076_PRJ1084_Salmonella_Dublin_2013_60_1016_1_R2.fastq.gz

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Bos taurus

text: Yes

text: cattle

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2100_PRJ1067_Salmonella_ssp_S15BD07768_7

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2101_PRJ1067_Salmonella_ssp_S15FP01305_13

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Belgium

text: Belgium

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2123_PRJ1067_Salmonella_ssp_HRECC_29S_15

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Croatia

characteristic: geo loc name

text: Croatia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2135_PRJ1067_Salmonella_ssp_F15_1096_1_380

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2136_PRJ1067_Salmonella_ssp_F15_180_1_1526

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2171_PRJ1067_Salmonella_ssp_PAT_15_16238SA

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Portugal

characteristic: geo loc name

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2174_PRJ1067_Salmonella_ssp_PAT_15_19702SA

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Portugal

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2176_PRJ1067_Salmonella_ssp_PAT_15_27861SA

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Portugal

text: Portugal

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU2016_2185_PRJ1067_Salmonella_ssp_151570

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Spain

characteristic: geo loc name

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2187_PRJ1067_Salmonella_ssp_151916

text: DTU-GE

text: DTU

text: No

text: Spain

text: Spain

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Pig

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2016_2117_PRJ1067_Salmonella_Typhimurium1_4_5_12_i-_2351_2

characteristic: Submitter Id

text: DTU-GE

text: DTU

text: No

text: Cyprus

text: Cyprus

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2016_2159_PRJ1067_Salmonella_Infantis_S15_0228

text: DTU-GE

characteristic: broker name

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geo loc name

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Sus scrofa domesticus

text: Yes

text: Pig

text: Salmonella enterica

text: Salmonella enterica


text: Ruminococcus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Ruminococcus

characteristic: common name

text: Ruminococcus albus

text: Ruminococcus albus

characteristic: subject id

text: Ruminococcus albus

characteristic: title


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RKI

text: Salmonella Typhimurium NGS data from Germany

characteristic: description

text: No

text: Germany

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Homo sapiens sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica enterica

characteristic: isolate

text: Faeces

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica serovar Typhimurium

text: Typhimurium

characteristic: serovar

text: Salmonella Typhimurium from food


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SSI

text: public

text: RKI

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Homo sapiens sapiens

text: Yes

text: Salmonella enterica enterica

text: not provided

characteristic: organism

text: Typhimurium

text: Salmonella Typhimurium from food


text: SSI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RKI

characteristic: description

text: No

text: Germany

characteristic: geographic location (longitude)

text: not provided

text: Homo sapiens sapiens

text: Yes

text: Salmonella enterica enterica

text: Urine

text: Typhimurium

text: Salmonella Typhimurium from food

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SSI

text: public

text: RKI

text: No

text: Germany

text: not provided

characteristic: host health state

text: Homo sapiens sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica enterica

characteristic: isolate

text: Other

characteristic: isolation source host associated

text: Typhimurium

characteristic: serovar

text: Salmonella Typhimurium from food


characteristic: External Id

text: University of Gothenburg

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:University of Gothenburg

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle phase

text: MLS 1765-92

characteristic: cell line

text: human

characteristic: common name

text: Protocols: For single-cell sampling, 1 million trypsinized MLS 1765-92 cells/ml were resuspended in Hanks’ balanced salt solution (Thermo Fisher Scientific) and stained for nuclear DNA using Vybrant DyeCycle Violet stain (Thermo Fisher Scientific) at 37°C and a final concentration of 5 µM for 30 min. After staining, the cells were resuspended in Hanks’ balanced salt solution and filtered via a 70 µm cell strainer (BD Biosciences) to remove cell aggregates. The cells were kept on ice until sorting. Single cells were sorted according to cell cycle phases G1, S, and G2/M into 96-well plates (Thermo Fisher Scientific) containing 5 µl 1 µg/µl BSA in 2.5% glycerol (Thermo Fisher Scientific) and 0.2% Triton X-100 (Sigma-Aldrich) in DNase/RNase-free water (Thermo Fisher Scientific) using a BD FACSAria II (Becton Dickinson) instrument and the FACSDiva software. Collected cells were frozen on dry ice immediately after sorting and stored at -80°C. MLS 1765-92 cells were cultured at 37°C and 5% CO2 in RPMI 1640 GlutaMax medium supplemented with 5% fetal bovine serum (FBS), 100 U/ml penicillin, and 100 µg/ml streptomycin. Cells were passaged with 0.25% trypsin containing 0.5 mM EDTA (all Thermo Fisher Scientific). To generate sequencing-ready libraries, the Smart-seq2 protocol was used, with minor changes. In short, 1 µM adapter sequence-containing oligo-dT (5’-AAGCAGTGGTATCAACGCAGAGTACT30VN-3’, Sigma-Aldrich), 1 mM dNTP (Sigma-Aldrich) and ERCC spike-in controls (corresponding to 1 µl of 1:2,500,000 diluted stock solution; Thermo Fisher Scientific) were incubated with direct lysed cells in a volume of 6.7 µl at 72˚C for 3 min. Reverse transcription (RT) was then performed in 15 µl by adding 1x first-strand buffer (50 mM Tris-HCl, pH 8.3, 75 mM KCl, and 3 mM MgCl2, Thermo Fisher Scientific), 1 M betaine (Sigma-Aldrich), 5 mM DTT, additional 10 mM MgCl2 (both Thermo Fisher Scientific), 0.6 µM adapter sequence-containing template switching oligonucleotide (5’-AAGCAGTGGTATCAACGCAGAGTACATrGrG+G-3’ where rG = riboguanosine and +G = locked nucleic acid modified guanosine, Eurogentec), 15 U RNaseOUT and 150 U SuperScript II enzyme (both Thermo Fisher Scientific) RT was performed at 42°C for 90 min and 70°C for 15 min before being chilled to 4°C. Final RT concentrations are shown. cDNA was stored at -20°C until further use. Preamplification of 7.5 µl cDNA was then performed in 50 µl, containing 1x KAPA Hifi HotStart Ready Mix (KAPA Biosystems) and 60 nM adapter sequence-matching primer (5’-AAGCAGTGGTATCAACGCAGAGT-3’, Sigma-Aldrich), as follows: denaturation at 98°C for 3 min followed by 24 cycles of amplification (98°C for 20 s, 67°C for 15 s, and 72°C for 6 min) and a final incubation at 72°C for 5 min before being chilled to 4°C. Preamplified cDNA was purified using the AMPure XP beads kit (Agencourt, Beckman Coulter), according to the Smart-seq2 protocol, with a sample to beads volume ratio of 0.8. Purified cDNA was eluted in 15 µl water and stored at -20°C until further use. Concentration, fragment length distribution, and total transcriptome amount of preamplified libraries were analyzed by capillary gel electrophoresis using the High Sensitivity DNA Kit (Agilent) on a 2100 Bioanalyzer (Agilent). Sequencing libraries were generated using the Nextera XT DNA Sample Preparation Kit and Nextera XT v2 Index Kit (both Illumina), following the manufacturer’s recommendations with minor changes. In short, 0.1 ng of purified and preamplified cDNA were tagmented in 20 µl, containing 10 µl TD buffer and 5 µl ATM at 55°C for 5 min. Tagmentation was stopped by adding 5 µl of NT buffer at room temperature incubating for another 5 min. Incorporation of index sequences was performed in 50 µl, containing 15 µl NPM PCR master mix solution, 5 µl i5 index primer and 5 µl i7 index primer, as follows: heating to 72°C for 3 min, denaturation at 95°C for 30 s and 16 cycles of amplification (95°C for 10 s, 55°C for 30 s, and 72°C for 30 s), and a final extension step at 72°C for 5 min before chilling to 10°C. Indexed samples were purified using the AMPure XP beads, as described above, with a sample to beads volume ratio of 0.6. Mean fragment length and concentration of indexed single-cell libraries were assessed using High Sensitivity DNA Kit (Agilent) and dsDNA High Sensitivity Assay Kit (Qubit, Thermo Fisher Scientific), respectively. Single-cell libraries were diluted to 2 nM, pooled and sequenced by the Genomics Core facility at the University of Gothenburg.

text: myxoid liposarcoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: adipose tissue

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Gothenburg

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: S

text: MLS 1765-92

text: human

characteristic: description

text: myxoid liposarcoma

text: Homo sapiens

text: Homo sapiens

text: adipose tissue

text: Homo sapiens

characteristic: title


characteristic: External Id

text: JOHANNES GUTENBERG UNIVERSITY MAINZ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:JOHANNES GUTENBERG UNIVERSITY MAINZ

text: human

text: Homo sapiens

text: Homo sapiens

text: Capture and/or shotgun data from aDNA libraries


AEHIb

text: JOHANNES GUTENBERG UNIVERSITY MAINZ

text: public

text: AEHIb

text: human

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF ABERDEEN

text: public

tag: Namespace:UNIVERSITY OF ABERDEEN

text: Campylobacter jejuni

text: Campylobacter jejuni

text: iCaMPS-4 study clinical/human isolate


text: UNIVERSITY OF ABERDEEN

text: public

text: Campylobacter coli

text: Campylobacter coli

text: iCaMPS-4 study clinical/human isolate


text: UCSDMI

text: public

text: TRUE

text: urban biome

characteristic: env biome

text: building

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text: built environment

characteristic: env package

text: air

text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

text: CO

text: Control

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: air

characteristic: sample type

characteristic: sampling event

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

characteristic: INSDC last update

text: public

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text: TRUE

text: urban biome

text: building

text: built environment

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

characteristic: organism

text: Ithaca

text: Cornell

text: TRUE

text: air

text: indoor metagenome

text: weatherization of older homes


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

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text: TRUE

text: urban biome

text: building

text: built environment

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: WE

text: Case

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: air

text: indoor metagenome

characteristic: title

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC first public

text: public

text: TRUE

text: urban biome

characteristic: env biome

text: building

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text: built environment

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text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

text: WE

text: Case

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: air

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

characteristic: collection date

text: Salmonella enterica subsp. enterica serovar Napoli

characteristic: common name

text: Germany

characteristic: geographic location (country and/or sea)

text: Salmonella enterica

characteristic: isolate

text: food

characteristic: isolation source

text: Napoli

characteristic: serovar

text: enterica

characteristic: sub species

text: ENGAGE-project Salmonella strains from BfR


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: Germany

text: Salmonella enterica

text: food

characteristic: organism

text: Napoli

text: enterica


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: Germany

text: Salmonella enterica

text: animal food

text: Napoli

text: enterica

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

characteristic: common name

text: Germany

text: Salmonella enterica

text: sewage sludge

text: Napoli

text: enterica


text: public

text: Germany

characteristic: geographic location (country and/or sea)

text: Salmonella enterica

characteristic: isolate

text: environment

characteristic: isolation source

text: Napoli

text: enterica


characteristic: ENA-LAST-UPDATE

text: public

text: Germany

text: Salmonella enterica

text: Napoli

characteristic: serovar

text: enterica

characteristic: sub species


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: CO1601.Blank_Floor wipe

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text: TRUE

text: urban biome

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text: built environment

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text: dust

text: USA:NY:Ithaca

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text: TRUE

text: TRUE

characteristic: host subject id

text: CO

text: Control

characteristic: latitude

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text: indoor metagenome

text: Ithaca

text: Cornell

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text: floor wipe

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text: indoor metagenome

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characteristic: ENA-CHECKLIST

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text: UCSDMI

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text: CO1602.Blank_Floor wipe

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text: urban biome

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

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text: indoor metagenome

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text: Ithaca

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text: floor wipe

text: indoor metagenome

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characteristic: ENA-LAST-UPDATE

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text: UCSDMI

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text: indoor metagenome

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text: floor wipe

text: indoor metagenome

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text: UCSDMI

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text: CO1702.blank_Floor wipe

text: TRUE

text: urban biome

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characteristic: env feature

text: built environment

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text: dust

text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

text: CO

text: Control

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: Ithaca

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text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

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text: public

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text: CO1801.blank_Floor wipe

text: TRUE

text: urban biome

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text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

characteristic: sample type

characteristic: sampling event

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

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text: CO1802.blank_Floor wipe

text: TRUE

text: urban biome

text: building

text: built environment

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

characteristic: organism

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

characteristic: title

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: CO1901.blank_Floor wipe

characteristic: description

text: TRUE

text: urban biome

characteristic: env biome

text: building

characteristic: env feature

text: built environment

characteristic: env package

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: CO1902.blank_Floor wipe

text: TRUE

text: urban biome

text: building

text: built environment

text: dust

text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

text: CO

text: Control

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

text: public

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text: CO2301.blank_Floor wipe

text: TRUE

text: urban biome

text: building

text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

characteristic: sample type

characteristic: sampling event

text: indoor metagenome

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC center name

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text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CO2302.blank_Floor wipe

text: TRUE

text: urban biome

text: building

text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

characteristic: organism

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

characteristic: title

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: CO3601.blank_Floor wipe

characteristic: description

text: TRUE

text: urban biome

characteristic: env biome

text: building

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text: built environment

characteristic: env package

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: CO3602.blank_Floor wipe

text: TRUE

text: urban biome

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text: dust

text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

text: CO

text: Control

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CO3701.blank_Floor wipe

text: TRUE

text: urban biome

text: building

text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

characteristic: sample type

characteristic: sampling event

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CO3702.blank_Floor wipe

text: TRUE

text: urban biome

text: building

text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

text: Control

text: indoor metagenome

characteristic: organism

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

characteristic: title

text: weatherization of older homes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: CO5501.blank_Floor wipe

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text: TRUE

text: urban biome

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text: building

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text: built environment

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text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

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text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CO5502.blank_Floor wipe

text: TRUE

text: urban biome

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text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

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text: Control

characteristic: latitude

characteristic: longitude

text: indoor metagenome

text: Ithaca

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text: indoor metagenome

text: weatherization of older homes


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characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

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text: public

characteristic: INSDC status

text: CO6401.blank_Floor wipe

text: TRUE

text: urban biome

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text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

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text: indoor metagenome

text: Ithaca

text: Cornell

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text: floor wipe

characteristic: sample type

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text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-LAST-UPDATE

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text: UCSDMI

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text: TRUE

text: urban biome

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

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text: indoor metagenome

characteristic: organism

text: Ithaca

text: Cornell

text: TRUE

text: air

text: indoor metagenome

characteristic: title

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC center name

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text: public

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text: TRUE

text: urban biome

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text: building

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text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

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text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: floor wipe

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

text: public

text: CO8701.Blank_Floor wipe

text: TRUE

text: urban biome

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text: dust

text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

text: TRUE

characteristic: host subject id

text: CO

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characteristic: latitude

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text: indoor metagenome

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text: floor wipe

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characteristic: ENA-LAST-UPDATE

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text: UCSDMI

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text: USA:NY:Ithaca

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text: indoor metagenome

text: Ithaca

text: Cornell

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text: air

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text: indoor metagenome

text: weatherization of older homes


text: UCSDMI

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text: CO8702.Blank_Floor wipe

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text: urban biome

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

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text: indoor metagenome

characteristic: organism

text: Ithaca

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characteristic: ENA-CHECKLIST

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text: TRUE

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text: TRUE

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text: floor wipe

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characteristic: ENA-LAST-UPDATE

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text: UCSDMI

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text: CO9502.blank_Floor wipe

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characteristic: geo loc name

text: TRUE

text: TRUE

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text: indoor metagenome

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text: UCSDMI

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text: D.CO1601.KITCHEN_Carpet dust

text: TRUE

text: urban biome

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text: CO

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text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: carpet dust

characteristic: sample type

characteristic: sampling event

text: indoor metagenome

text: weatherization of older homes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

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characteristic: SRA accession

characteristic: Submitter Id

text: D.CO1602.KITCHEN_Carpet dust

text: TRUE

text: urban biome

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text: built environment

text: dust

text: USA:NY:Ithaca

text: TRUE

text: TRUE

text: CO

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text: indoor metagenome

characteristic: organism

text: Ithaca

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text: carpet dust

text: indoor metagenome

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text: weatherization of older homes


characteristic: ENA-LAST-UPDATE

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text: UCSDMI

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text: D.CO1701.LIVING_Carpet dust

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text: USA:NY:Ithaca

text: TRUE

text: TRUE

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text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: carpet dust

text: indoor metagenome

text: weatherization of older homes


text: UCSDMI

characteristic: INSDC center name

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text: D.CO1702.LIVING_Carpet dust

text: TRUE

text: urban biome

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text: USA:NY:Ithaca

characteristic: geo loc name

text: TRUE

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characteristic: host subject id

text: CO

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characteristic: latitude

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text: indoor metagenome

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text: carpet dust

text: indoor metagenome

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

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text: D.CO1801.LIVING_Carpet dust

text: TRUE

text: urban biome

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text: USA:NY:Ithaca

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text: TRUE

text: CO

text: Control

text: indoor metagenome

text: Ithaca

text: Cornell

text: TRUE

text: carpet dust

characteristic: sample type

characteristic: sampling event

text: indoor metagenome

text: weatherization of older homes