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unit: DD

characteristic: geographic location (latitude)

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text: fecal sample from subject91

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text: Amplicon (V3-V4) of 16S rRNA gene from subject91


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characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: FISABIO- Public Health Research

characteristic: INSDC center name

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characteristic: human gut environmental package

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text: Amplicon (V3-V4) of 16S rRNA gene from subject93

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characteristic: ENA-CHECKLIST

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text: FISABIO- Public Health Research

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text: human-associated habitat

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text: human gut metagenome

text: human gut metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene from subject94


text: FISABIO- Public Health Research

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: human gut metagenome

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text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: human-gut

characteristic: environmental package

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: human gut metagenome

text: human gut metagenome

text: Illumina

text: Amplicon (V3-V4) of 16S rRNA gene from subject95


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO- Public Health Research

text: public

text: human gut metagenome

text: fecal sample from subject98

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: human-gut

text: Spain

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: organism

characteristic: project name

text: human gut metagenome

text: Illumina

characteristic: sequencing method

text: Amplicon (V3-V4) of 16S rRNA gene from subject98

characteristic: title


MeSV1 R1

text: ETH ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MeSV1 R1

tag: Namespace:ETH ZURICH

characteristic: Submitter Id

text: Laboratory evolved methanol-essential strain

characteristic: description

text: Escherichia coli BW25113

text: Escherichia coli BW25113

text: Methanol-essential growth of Escherichia coli


MeSV1 R2

text: ETH ZURICH

text: public

characteristic: SRA accession

text: MeSV1 R2

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV1 R3

characteristic: ENA-CHECKLIST

text: ETH ZURICH

text: public

text: MeSV1 R3

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV1 R4

characteristic: ENA-FIRST-PUBLIC

text: ETH ZURICH

text: public

text: MeSV1 R4

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV1 R5

characteristic: ENA-LAST-UPDATE

text: ETH ZURICH

text: public

text: MeSV1 R5

text: Escherichia coli BW25113

text: Escherichia coli BW25113


characteristic: External Id

text: ETH ZURICH

text: public

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV2.1 R1

text: ETH ZURICH

text: public

text: MeSV2.1 R1

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV2.1 R2

text: ETH ZURICH

text: public

text: MeSV2.1 R2

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV2.1 R3

text: ETH ZURICH

text: public

text: MeSV2.1 R3

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV2.1 R4

text: ETH ZURICH

text: public

text: MeSV2.1 R4

text: Escherichia coli BW25113

text: Escherichia coli BW25113


MeSV2.1 R5

text: ETH ZURICH

text: public

text: MeSV2.1 R5

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: CNRS / Univ. Lyon 1

text: public

tag: Namespace:CNRS / Univ. Lyon 1

characteristic: collection date

text: Czech Republic

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seeds were collected from the wild then grown in controlled greenhouse conditions.

characteristic: isolation and growth condition

text: Silene viscosa

text: adult

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Silene viscosa

text: Silene viscosa RNA-seq reads


text: CNRS / Univ. Lyon 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sweden

text: Silene viscosa

characteristic: organism

text: adult

text: soil

text: leaf

text: Silene viscosa

text: Silene viscosa RNA-seq reads

characteristic: title


characteristic: ENA-CHECKLIST

text: CNRS / Univ. Lyon 1

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Russia

text: Silene viscosa

text: adult

text: soil

text: flower bud

text: Silene viscosa

text: Silene viscosa RNA-seq reads


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS / Univ. Lyon 1

text: public

characteristic: collection date

text: Kyrgyzstan

text: Silene viscosa

text: adult

text: soil

text: flower bud

text: Silene viscosa

text: Silene viscosa RNA-seq reads


text: CNRS / Univ. Lyon 1

text: public

text: Bulgaria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Silene viscosa

text: adult

text: soil

text: flower bud

text: Silene viscosa

text: Silene viscosa RNA-seq reads


characteristic: INSDC center name

text: public

tag: Namespace:ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: chicken

characteristic: common name

text: Adult

characteristic: dev stage

text: Gallus gallus

text: Gallus gallus

text: Male

characteristic: sex

text: Testes

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: chicken

text: Adult

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: Spleen

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:National Institutes for Quantum and Radiological Science and Technology

characteristic: Submitter Id

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (1min)


characteristic: External Id

text: National Institutes for Quantum and Radiological Science and Technology

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (3min)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (6min)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (10min)


text: public

text: chicken

text: Gallus gallus

text: Gallus gallus

text: Macrophage


text: THE OHIO STATE UNIVERSITY

text: public

tag: Namespace:THE OHIO STATE UNIVERSITY

text: uncultured bacterium

text: uncultured bacterium

text: 16s gene


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (1min, replicate_A)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (1min, replicate_B)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (1min, replicate_C)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (3min, replicate_A)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (3min, replicate_B)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (3min, replicate_C)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (6min, replicate_A)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (6min, replicate_B)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (6min, replicate_C)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (10min, replicate_A)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (10min, replicate_B)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on 20 +1 nucleosomes of yeast (10min, replicate_C)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on free DNAs of 20 +1 nucleosomes of yeast (1min, replicate_A)


text: National Institutes for Quantum and Radiological Science and Technology

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on free DNAs of 20 +1 nucleosomes of yeast (1min, replicate_B)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on free DNAs of 20 +1 nucleosomes of yeast (1min, replicate_C)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on free DNAs of 20 +1 nucleosomes of yeast (3min, replicate_A)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on free DNAs of 20 +1 nucleosomes of yeast (3min, replicate_B)


text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: MNase digestion assays on free DNAs of 20 +1 nucleosomes of yeast (3min, replicate_C)


text: gut metagenome

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: gut metagenome

text: gut metagenome

text: gut metagenome

characteristic: subject id


characteristic: INSDC center name

text: public

tag: Namespace:Centro de Biotecnologia y Genomica de Plantas, Universidad Politecnica de Madrid (UPM) - Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA)

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: Protocols: Leaves were harvested after 7 days of treatment. Samples were frozen into liquid nitrogen and stored at -80ºC. Barley plants of Hordeum vulgare cv. Golden Promise were used. Grains were germinated in soil and grown at 22ºC under a 16 h light/8 h darkness photoperiod for 7 days in Sanyo MLR-350-H chambers. A colony of the two-spotted spider mite Tetranychus urticae London strain (Acari: Tetranychidae) was maintained on beans in a Sanyo MLR-350-H growth chamber at 25ºC under a 16 h light/8 h darkness photoperiod. This colony was transferred to barley where it was maintained under the same conditions for more than 30 generations to ensure mite adaptation to the host. For spider mite infestation, each plant was infested with 20 adult female mites adapted to barley. The infestation was performed by placing a barley leaf with the mites on the experimental plant leaves. A falcon tube with holes was used to help maintaining the leaves together. Barley plants were confined in pots with plastic cylinders covered on top by nylon nets to avoid dispersion of mites. The same isolation system was applied to control and dehydration stressed plants. For dehydration treatments, pots were placed over Petri plastic plates to individualize watering. Plants were subjected to dehydration stress imposed by continuous water deprivation. Controls were watered to maintain soil moisture at 70% (considered as optimal watering). In addition, both stresses were combined. Total RNA was extracted from frozen barley leaves by the phenol/chloroform method, followed by precipitation with 8 M LiCl and digested with DNase (Promega). Using poly-T oligo-attached magnetic beads, mRNAs were purified from the total RNA. Then, the mRNAs were fragmented and cDNA was synthesized using random hexamer-primers, DNA polymerase I and RNase H. The double-stranded cDNAs were purified with magnetic beads and ligated to adaptors for Illumina sequencing. The quality and quantity of the library was verified using an Agilent 2100 Bioanalyzer and an ABI StepOnePlus Real-Time PCR system, respectively.

characteristic: description

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf

characteristic: organism part

text: Hordeum vulgare subsp. vulgare


characteristic: ENA-CHECKLIST

text: Centro de Biotecnologia y Genomica de Plantas, Universidad Politecnica de Madrid (UPM) - Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: leaf

text: Hordeum vulgare subsp. vulgare


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on nuc19 (1min, replicate_A)

characteristic: title


characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on nuc19 (1min, replicate_B)


characteristic: INSDC center name

text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on nuc19 (1min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_1 (1min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_1 (1min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_1 (1min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_2 (1min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_2 (1min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_2 (1min, replicate_C)


text: National Institutes for Quantum and Radiological Science and Technology

text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_3 (1min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_3 (1min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_3 (1min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_4 (1min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_4 (1min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_4 (1min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on nuc19 (3min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on nuc19 (3min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on nuc19 (3min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_1 (3min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_1 (3min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_1 (3min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_2 (3min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_2 (3min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_2 (3min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_3 (3min, replicate_A)


text: National Institutes for Quantum and Radiological Science and Technology

text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_3 (3min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_3 (3min, replicate_C)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_4 (3min, replicate_A)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_4 (3min, replicate_B)


text: public

text: eukaryotic synthetic construct

text: eukaryotic synthetic construct

text: MNase digestion assays on mut_4 (3min, replicate_C)


text: public

tag: Namespace:Chengdu research base of giant panda breeding

characteristic: collection date

text: giant panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Study for giant panda gut microbiota and cellulose digestion mechanism

characteristic: project name

text: metagenome

text: Illumina Hiseq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University clinic Muenster

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University clinic Muenster

text: Germany

text: restricted access

characteristic: host health state

text: human

characteristic: host scientific name

characteristic: isolate

text: human

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: The energy-coupling factor transporter module EcfAA´T, a novel candidate for the genetic basis of fatty acid-auxotrophic small-colony variants of Staphylococcus aureus


CECT 90731

characteristic: External Id

text: Universidad de Sevilla

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CECT 90731

tag: Namespace:Universidad de Sevilla

characteristic: Submitter Id

characteristic: collection date

text: marshes

characteristic: environment (biome)

text: endophyte of halophyte plant

characteristic: environment (feature)

text: Aerial part of Arthrocnemum macrostachyum

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: mimarks-survey

text: Kushneria sp. EAod3

text: plant-associated

characteristic: plant-associated environmental package

text: Whole genome sequencing of Kushneria sp. EAod3

text: Kushneria sp. EAod3

text: Illumina platform

characteristic: strain

text: Kushneria sp. EAod3

characteristic: title


text: Homo sapien

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: MIO

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: hydrothermal vent metagenome

characteristic: organism

text: hydrothermal vent metagenome

text: Biodiversity of chimney sample


text: MIO

text: public

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity on Anode of week 1


text: MIO

text: public

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity in liquid media of week 1


text: MIO

text: public

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity on Anode of week 2


text: MIO

text: public

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity in liquid media of week 2


text: MIO

text: public

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity on Anode of week 3


text: MIO

text: public

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity in liquid media of week 3


Control-WE

text: MIO

text: public

text: Control-WE

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity on Anode of control


Control-LM

text: MIO

text: public

text: Control-LM

text: hydrothermal vent metagenome

text: hydrothermal vent metagenome

text: Biodiversity in liquid media of control


text: STELLENBOSCH UNIVERSITY

text: public

tag: Namespace:STELLENBOSCH UNIVERSITY

characteristic: collection date

text: South Africa

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: patient X

characteristic: isolate

text: South Africa

characteristic: isolation source

text: Mycobacterium [tuberculosis] TKK-01-0051

text: Clinical M.tuberculosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SZEGED

text: public

tag: Namespace:UNIVERSITY OF SZEGED

text: Varicella-zoster virus

text: Mixed Infection polyA selected

characteristic: description

text: Human alphaherpesvirus 3

text: Human alphaherpesvirus 3

text: Mixed Infection polyA selected

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SZEGED

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Varicella-zoster virus

text: Mixed Infection CAP selected

text: Human alphaherpesvirus 3

text: Human alphaherpesvirus 3

text: Mixed Infection CAP selected


text: Haemonchus contortus

characteristic: ArrayExpress-SPECIES

text: BC8 Kokstad x ISE not treated

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

text: Haemonchus contortus

characteristic: subject id

text: Haemonchus contortus


text: Haemonchus contortus

text: BC8 Kokstad x ISE LEV-treated

text: SC

text: public

characteristic: Submitter Id

text: barber pole worm

text: Haemonchus contortus

characteristic: organism

text: Haemonchus contortus

text: Haemonchus contortus


text: Haemonchus contortus

text: Borgsteed

text: SC

text: public

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Haemonchus contortus


text: UNIVERSITY OF COPENH

text: public

tag: Namespace:UNIVERSITY OF COPENH

text: human

text: Homo sapiens

text: Homo sapiens

text: ODENSE


E-MTAB-6569:H2A.Z 0min +UV IP

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Z 0min +UV IP

tag: Namespace:Cardiff University

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: ChIP and Input DNA from yeast chromatin. Antibodies used are: anti-HA (05-904 - Merck Millipore) and anti-Abf1 (yC-20, Santa Cruz Biotechnology) YPD 30C 254nm UV-C irradiation 100J/m2 at 10J/m2s SAM to BAM conversion using samtools Ion Proton ChIP-seq library prep (modified)

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX

characteristic: strain

text: H2A.Z 0min +UV IP


E-MTAB-6569:H2A.Z 60min +UV IP

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Z 60min +UV IP

text: ArrayExpress

text: baker's yeast

characteristic: description

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX

text: H2A.Z 60min +UV IP


E-MTAB-6569:H2A.Z 0min +UV Input

characteristic: ENA-LAST-UPDATE

text: Cardiff University

characteristic: INSDC first public

text: public

text: E-MTAB-6569:H2A.Z 0min +UV Input

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX

text: H2A.Z 0min +UV Input

characteristic: title


E-MTAB-6569:H2A.Z 60min +UV Input

text: Cardiff University

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6569:H2A.Z 60min +UV Input

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX

text: H2A.Z 60min +UV Input


E-MTAB-6569:H2A.Z noUV IP

characteristic: External Id

text: Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-6569:H2A.Z noUV IP

text: ArrayExpress

text: baker's yeast

text: Protocols: ChIP and Input DNA from yeast chromatin. Antibodies used are: anti-HA (05-904 - Merck Millipore) and anti-Abf1 (yC-20, Santa Cruz Biotechnology) YPD 30C mock treatment in 1x ice-cold PBS SAM to BAM conversion using samtools Ion Proton ChIP-seq library prep (modified)

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX

text: H2A.Z noUV IP


E-MTAB-6569:H2A.Z noUV Input

text: Cardiff University

text: public

characteristic: SRA accession

text: E-MTAB-6569:H2A.Z noUV Input

text: ArrayExpress

text: baker's yeast

characteristic: common name

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX

text: H2A.Z noUV Input


E-MTAB-6569:H2A.Zrad16 0min +UV IP

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Zrad16 0min +UV IP

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX RAD16::HIS3

text: H2A.Zrad16 0min +UV IP


E-MTAB-6569:H2A.Zrad16 60min +UV IP

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Zrad16 60min +UV IP

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX RAD16::HIS3

text: H2A.Zrad16 60min +UV IP


E-MTAB-6569:H2A.Zrad16 0min +UV Input

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Zrad16 0min +UV Input

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX RAD16::HIS3

text: H2A.Zrad16 0min +UV Input


E-MTAB-6569:H2A.Zrad16 60min +UV Input

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Zrad16 60min +UV Input

text: ArrayExpress

text: baker's yeast

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX RAD16::HIS3

text: H2A.Zrad16 60min +UV Input


E-MTAB-6569:H2A.Zrad16 noUV IP

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Zrad16 noUV IP

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX RAD16::HIS3

characteristic: strain

text: H2A.Zrad16 noUV IP


E-MTAB-6569:H2A.Zrad16 noUV Input

characteristic: ENA-CHECKLIST

text: Cardiff University

text: public

text: E-MTAB-6569:H2A.Zrad16 noUV Input

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B HA-HTZ1::KanMX RAD16::HIS3

text: H2A.Zrad16 noUV Input


E-MTAB-6569:Nucl Wildtype 0min +UV

characteristic: ENA-FIRST-PUBLIC

text: Cardiff University

text: public

text: E-MTAB-6569:Nucl Wildtype 0min +UV

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B Rad16-18myc::URA3

text: Nucl Wildtype 0min +UV


E-MTAB-6569:Nucl Wildtype 30min +UV

text: Cardiff University

text: public

text: E-MTAB-6569:Nucl Wildtype 30min +UV

text: ArrayExpress

text: baker's yeast

characteristic: description

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B Rad16-18myc::URA3

text: Nucl Wildtype 30min +UV


E-MTAB-6569:Nucl Wildtype noUV

characteristic: ENA-LAST-UPDATE

text: Cardiff University

text: public

text: E-MTAB-6569:Nucl Wildtype noUV

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B Rad16-18myc::URA3

text: Nucl Wildtype noUV


E-MTAB-6569:Nucl rad16 0min +UV

text: Cardiff University

characteristic: INSDC first public

text: public

text: E-MTAB-6569:Nucl rad16 0min +UV

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B rad16::HIS3

text: Nucl rad16 0min +UV


E-MTAB-6569:Nucl rad16 30min +UV

text: Cardiff University

text: public

text: E-MTAB-6569:Nucl rad16 30min +UV

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B rad16::HIS3

text: Nucl rad16 30min +UV

characteristic: title


E-MTAB-6569:Nucl rad16 noUV

text: Cardiff University

characteristic: INSDC last update

text: public

text: E-MTAB-6569:Nucl rad16 noUV

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: W303-1B rad16::HIS3

text: Nucl rad16 noUV


E-MTAB-6569:Abf1 +UV IP 2601

text: Cardiff University

text: public

characteristic: INSDC status

text: E-MTAB-6569:Abf1 +UV IP 2601

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Abf1 +UV IP 2601


E-MTAB-6569:Abf1 +UV Input 2601

characteristic: External Id

text: Cardiff University

text: public

text: E-MTAB-6569:Abf1 +UV Input 2601

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Abf1 +UV Input 2601


E-MTAB-6569:Abf1 noUV IP 2601

text: Cardiff University

characteristic: INSDC center name

text: public

text: E-MTAB-6569:Abf1 noUV IP 2601

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Abf1 noUV IP 2601


E-MTAB-6569:Abf1 noUV IP 2610

text: Cardiff University

text: public

characteristic: SRA accession

text: E-MTAB-6569:Abf1 noUV IP 2610

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Abf1 noUV IP 2610


E-MTAB-6569:Abf1 noUV Input 2601

text: Cardiff University

text: public

text: E-MTAB-6569:Abf1 noUV Input 2601

text: ArrayExpress

text: baker's yeast

characteristic: common name

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Abf1 noUV Input 2601


E-MTAB-6569:Abf1 noUV Input 2610

text: Cardiff University

text: public

text: E-MTAB-6569:Abf1 noUV Input 2610

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Abf1 noUV Input 2610


text: public

tag: Namespace:INSTITUTO DE BIOTECNOLOGIA UNIVERSIDAD NACIONAL DE

text: Thorellius atrox

characteristic: organism

text: Thorellius atrox

text: Transcriptome analysis of the venom gland of Thorellius atrox scorpion by RNA-Seq


E-MTAB-6573:Sample 1

text: public

text: E-MTAB-6573:Sample 1

tag: Namespace:Institute for Molecular Bioscience, University of Queensland

text: ArrayExpress

characteristic: broker name

text: Protocols: Erythrocytes were pelleted, adjusted to 50% haematocrit and collected into PAXgene blood RNA tube (Qiagen). Parasites were grown in human A+ erythrocytes at 1-5% haematocrit in RPMI-1640 (without L-glutamine, with HEPES) (Sigma) supplemented with 5 g/liter Albumax II (Invitrogen), 147 M hypoxanthine, 2 mM L-glutamine,10 mM D-glucose in 5% CO2 and low oxygen (1% or 5%) at 37 °C. Parasites were synchronised at early ring stage through a combination of Percoll and sorbitol treatments prior to supplementation with sodium L-lactate at 15mM or control medium. Total RNA was extracted using PAXgene blood RNA kit (Qiagen). Libraries were prepared with 1μg of total RNA using the ScriptSeq v2 RNA-seq library preparation kit (Illumina). Globin-Zero Gold kit (Epicentre) was used to remove ribosomal RNA.

text: ring stage trophozoite

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 1


E-MTAB-6573:Sample 2

tag: attribute

characteristic: ENA-CHECKLIST

text: Institute for Molecular Bioscience, University of Queensland

text: public

text: E-MTAB-6573:Sample 2

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

characteristic: growth condition

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 2


E-MTAB-6573:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6573:Sample 3

text: ArrayExpress

characteristic: description

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 3


E-MTAB-6573:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-6573:Sample 4

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 4


E-MTAB-6573:Sample 5

characteristic: INSDC last update

text: public

text: E-MTAB-6573:Sample 5

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 5

characteristic: title


E-MTAB-6573:Sample 6

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-6573:Sample 6

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 6


E-MTAB-6573:Sample 7

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6573:Sample 7

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 7


E-MTAB-6573:Sample 8

text: public

text: E-MTAB-6573:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 8


E-MTAB-6573:Sample 9

text: public

text: E-MTAB-6573:Sample 9

text: ArrayExpress

text: ring stage trophozoite

text: wild type genotype

text: human A+ erythrocytes in RPMI-1640

text: Plasmodium falciparum 3D7

characteristic: organism

text: Plasmodium falciparum 3D7

text: Plasmodium falciparum 3D7

text: Sample 9


text: DEPARTMENT OF BIOLOGY

text: public

tag: Namespace:DEPARTMENT OF BIOLOGY

text: Protist ciliate microbiome

text: uncultured bacterium

text: uncultured bacterium

text: Microbes' microbiomes: 16S rRNA gene reads.


text: DEPARTMENT OF BIOLOGY

text: public

text: Control community

text: uncultured bacterium

text: uncultured bacterium


text: UCSDMI

text: public

text: qiita_sid_11405:11405.subject189.timepoint18

characteristic: age

text: months

characteristic: age units

text: FALSE

text: LEG 189 - WEEK 18

characteristic: anonymized name

text: Not provided

text: Not provided

text: FALSE

text: Not provided

characteristic: bmi

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Fecal sample from host 189 at visit 18 weeks

text: FALSE

characteristic: deworming

text: Not provided

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: village biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: Not provided

text: Not provided

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: Malawi

characteristic: geo loc name

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

characteristic: height

text: cm

text: FALSE

text: Not provided

text: FALSE

text: Not provided

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: TRUE

text: FALSE

text: TRUE

text: high

text: Control

characteristic: intervention

text: False

text: TRUE

text: FALSE

text: Not provided

text: mg/ml

text: C

text: Not provided

text: mg/ml

text: FALSE

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: cm

text: Not provided

text: Not provided

text: Not provided

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: human gut metagenome

text: Wash U

text: True

text: C

text: stool

text: human gut metagenome

text: rain

text: male

text: FALSE

text: Manary legume study

text: FALSE

text: FALSE

text: Masenjere

text: Not provided

text: ml

text: FALSE

text: Not provided

text: TRUE

text: kg

text: False

text: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_11405:11405.subject19.timepoint0

characteristic: Submitter Id

text: months

text: FALSE

text: LEG 19 - WEEK 0

text: Not provided

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Fecal sample from host 19 at visit 0 weeks

characteristic: description

text: Not provided

text: Not provided

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

text: Host-associated

text: Animal

text: Animal distal gut

text: village biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: TRUE

text: FALSE

text: Not provided

text: FALSE

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Malawi

text: TRUE

text: TRUE

text: TRUE

text: TRUE

text: TRUE

text: cm

text: FALSE

text: Not provided

text: TRUE

text: TRUE

text: human

text: Homo sapiens

text: FALSE

text: FALSE

text: FALSE

text: low

text: Cowpea

text: False

text: TRUE

text: TRUE

text: mg/ml

text: G

text: mg/ml

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: cm

text: Not provided

text: weeks

text: weeks

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: human gut metagenome

text: Wash U

text: True

text: G

text: stool

text: human gut metagenome

text: dry

text: male

text: FALSE

text: Manary legume study

text: FALSE

text: FALSE

text: Limela

text: ml

text: Not provided

text: Not provided

text: FALSE

text: kg

text: False

text: Not provided


text: UCSDMI

text: public

text: qiita_sid_11405:11405.subject193.timepoint0

characteristic: age

text: months

characteristic: age units

text: FALSE

text: LEG 193 - WEEK 0

characteristic: anonymized name

text: Not provided

text: Not provided

text: FALSE

characteristic: bmi

text: FALSE

text: FALSE

text: FALSE

text: Fecal sample from host 193 at visit 0 weeks

text: Not provided

characteristic: deworming

text: Not provided

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: village biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: TRUE

text: FALSE

text: TRUE

text: Not provided

text: FALSE

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Malawi

characteristic: geo loc name

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

characteristic: height

text: cm

text: FALSE

text: Not provided

text: FALSE

text: Not provided

text: human

text: Homo sapiens

text: TRUE

text: TRUE

text: TRUE

text: high

text: Cowpea

text: False

text: TRUE

text: FALSE

text: mg/ml

text: C

text: mg/ml

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: cm

text: Not provided

text: weeks

text: Not provided

text: weeks

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: human gut metagenome

text: Wash U

text: True

text: C

text: stool

text: human gut metagenome

text: dry

text: female

text: FALSE

text: Manary legume study

text: FALSE

text: FALSE

text: Masenjere

text: ml

text: Not provided

text: Not provided

text: TRUE

text: kg

text: False

text: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: qiita_sid_11405:11405.subject340.timepoint24

text: months

text: FALSE

text: LEG 340 - WEEK 24

text: Not provided

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: Fecal sample from host 340 at visit 24 weeks

text: FALSE

text: Not provided

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

text: Host-associated

text: Animal

text: Animal distal gut

text: village biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: FALSE

text: TRUE

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: Malawi

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: cm

text: FALSE

text: Not provided

text: TRUE

text: FALSE

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: FALSE

text: TRUE

text: FALSE

text: high

text: Bean

characteristic: intervention

text: False

text: TRUE

text: FALSE

text: mg/ml

text: H

text: mg/ml

text: FALSE

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: cm

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: human gut metagenome

text: Wash U

text: True

text: H

text: stool

text: human gut metagenome

text: dry

text: male

text: FALSE

text: Manary legume study

text: FALSE

text: FALSE

text: Masenjere

text: ml

text: FALSE

text: Not provided

text: TRUE

text: kg

text: False

text: Not provided


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_11405:11405.subject347.timepoint18

characteristic: Submitter Id

characteristic: age

text: months

characteristic: age units

text: FALSE

text: LEG 347 - WEEK 18

characteristic: anonymized name

text: Not provided

text: Not provided

text: FALSE

text: Not provided

characteristic: bmi

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Fecal sample from host 347 at visit 18 weeks

characteristic: description

text: FALSE

characteristic: deworming

text: Not provided

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: True

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: village biome

text: human-associated habitat

text: human-gut

text: feces

text: TRUE

text: FALSE

text: TRUE

text: Not provided

text: FALSE

text: Not provided

text: Not provided

text: Not provided

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: Malawi

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: cm

text: FALSE

text: Not provided

text: TRUE

text: FALSE

text: human

text: Homo sapiens

text: TRUE

text: TRUE

text: TRUE

text: high

text: Bean

text: False

text: TRUE

text: FALSE

text: Not provided

text: mg/ml

text: A

text: Not provided

text: mg/ml

text: FALSE

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: False

text: cm

text: Not provided

text: Not provided

text: Not provided

text: Not provided

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: human gut metagenome

text: Wash U

text: True

text: A

text: stool

text: human gut metagenome

text: dry

text: female

text: FALSE

text: Manary legume study

text: FALSE

text: FALSE

text: Masenjere

text: Not provided

text: ml

text: FALSE

text: Not provided

text: TRUE

text: kg

text: False

text: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Chinese Academy of Sciences

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Chinese Academy of Sciences

unit: hour

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: Protocols: ChIP assay was carried out within the HA-atf3 mRNA injected embryos at 32 hpf. The sonicated DNA was precipitated by HA-Tag (C29F4, Cell Signalling) Rabbit mAb. Afterward, the precipitated DNA was collected by QIAquick PCR Purification Kit. 10 ng of DNA samples were prepared for Illumina sequencing as the standard steps using the TruSeq Rapid SBS Kit. Illumina's genomic adapters were ligated to the DNA fragments. Enriched ligated fragments of ~200 - 500 bp was purified and quantified. The libraries were denatured, captured on Illumina flow cell and amplified in situ.

text: embryo

characteristic: developmental stage

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Danio rerio

text: Tuebingen

characteristic: strain

characteristic: title


text: ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: chicken

text: Adult

characteristic: dev stage

text: Gallus gallus

text: Gallus gallus

text: Brain

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: Yes

text: No

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Fresh

text: Female

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

text: No

characteristic: latitude

characteristic: longitude

text: Female

characteristic: msm

text: No

text: human gut metagenome

text: Heterosexual

text: No

text: UCD-AMC

text: FALSE

text: White

text: Never

text: feces

text: human gut metagenome

text: female

text: Fecal microbiota composition drives immune activation in HIV-infected individuals

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Positive

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: azithromycin 7/2014 infection

characteristic: antibiotic type

text: Yes

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: clindamycin

text: Yes

text: No

text: No

text: Yes

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Female

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Positive

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: Female

characteristic: msm

text: human gut metagenome

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: female

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: No

text: No

text: No

text: Yes

text: Yes

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: hispanic

text: Frozen > 1 week

text: Female

text: USA:CO:Aurora

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

text: No

characteristic: latitude

characteristic: longitude

text: Female

text: No

text: human gut metagenome

text: Heterosexual

text: No

text: UCD-AMC

text: FALSE

text: White

text: Never

text: feces

text: human gut metagenome

text: female

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Positive

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

characteristic: msm

text: Yes

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: < 1 time per week

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: No

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv status

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

text: No

characteristic: latitude

characteristic: longitude

text: Yes

text: No

text: human gut metagenome

characteristic: organism

text: Gay

characteristic: orientation

text: No

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: < 1 time per week

text: feces

text: human gut metagenome

text: male

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv status

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

characteristic: msm

text: No

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: < 1 time per week

text: feces

text: human gut metagenome

text: male

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: No

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Yes

text: Negative

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: Yes

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: feces

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: Yes

text: No

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Female

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Female

characteristic: msm

text: No

text: human gut metagenome

text: Heterosexual

text: No

text: UCD-AMC

text: FALSE

text: White

text: Never

text: feces

text: human gut metagenome

text: female

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

text: No

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

characteristic: msm

text: No

text: human gut metagenome

text: Gay

characteristic: orientation

text: Yes

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: >1 time per week

text: feces

text: human gut metagenome

text: male

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: Yes

text: Yes

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: Black/African American

text: feces

text: human gut metagenome

text: male

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: No

text: No

text: Yes

text: No

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: human gut metagenome

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: feces

text: human gut metagenome

text: male

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

text: No

characteristic: latitude

characteristic: longitude

text: Yes

characteristic: msm

text: No

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: < 1 time per week

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: PCN

characteristic: antibiotic type

text: Yes

text: No

text: Yes

text: No

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

text: Yes

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: < 1 time per week

text: feces

text: human gut metagenome

text: male

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: Yes

text: No

text: Yes

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: Black/African American

text: feces

text: human gut metagenome

text: male

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: Yes

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

characteristic: msm

text: No

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: < 1 time per week

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: Yes

text: Yes

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: hispanic

text: Frozen > 1 week

text: Female

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: Female

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: female

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: No

text: No

text: Yes

text: No

text: Yes

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

characteristic: high risk

text: Positive

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: human gut metagenome

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: male

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: Yes

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Yes

text: Negative

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

text: No

characteristic: latitude

characteristic: longitude

text: Yes

characteristic: msm

text: No

text: human gut metagenome

characteristic: organism

text: Gay

characteristic: orientation

text: No

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: >1 time per week

text: feces

text: human gut metagenome

text: male

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

text: No

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: Never

text: feces

text: human gut metagenome

text: male

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

text: No

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

text: No

characteristic: latitude

characteristic: longitude

text: Yes

characteristic: msm

text: No

text: human gut metagenome

text: Gay

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: Never

text: feces

text: human gut metagenome

text: male

text: untreated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: Yes

text: No

text: human gut metagenome

characteristic: organism

text: Gay

characteristic: orientation

text: Yes

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: >1 time per week

text: feces

text: human gut metagenome

text: male

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: Bactrim

characteristic: antibiotic type

text: Yes

text: Yes

text: Yes

text: No

text: Yes

text: No

text: bacteria isolated from stool sample

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: hispanic

text: Frozen > 1 week

text: Female

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: Female

characteristic: msm

text: human gut metagenome

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: female

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: Yes

text: human gut metagenome

characteristic: organism

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: feces

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

characteristic: title

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age units

characteristic: anonymized name

text: Yes

text: Yes

text: No

text: No

text: Yes

text: Yes

characteristic: bmi

text: bacteria isolated from stool sample

characteristic: description

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Frozen > 1 week

text: Male

text: USA:CO:Aurora

text: Positive

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: cm

characteristic: latitude

characteristic: longitude

text: human gut metagenome

text: UCD-AMC

text: FALSE

text: White

text: feces

text: human gut metagenome

text: male

text: treated

text: SIP


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

text: No

text: No

text: No

text: No

text: No

text: No

text: bacteria isolated from stool sample

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Frozen > 1 week

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

characteristic: height

text: No

characteristic: high risk

text: Negative

characteristic: hiv status

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: adult

text: Homo sapiens

text: cm

text: No

text: No

characteristic: msm

text: No

text: human gut metagenome

characteristic: organism

text: Heterosexual

characteristic: orientation

text: No

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: Never

text: feces

text: human gut metagenome

text: male

text: SIP