text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_F2-sc-2011-06-06T16:12:32Z-1136437

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


status: PUBLIC

text: Danio rerio

tag: attribute

characteristic: ArrayExpress-Species

text: TL

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SL3_04_C3-sc-2011-06-06T16:13:30Z-1136538

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Exome

characteristic: sample description

text: Danio rerio

text: TL

characteristic: strain


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_E10-sc-2011-06-06T16:14:04Z-1136596

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_F7-sc-2011-06-06T16:12:56Z-1136477

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_C11-sc-2011-06-06T16:13:12Z-1136506

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_G8-sc-2011-06-06T16:13:55Z-1136582

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_A4-sc-2011-06-06T16:12:40Z-1136448

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_H5-sc-2011-06-06T16:12:49Z-1136463

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_05_B1-sc-2011-07-19T14:28:17Z-1194958

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: SC

text: public

text: TC14kb_insert_genomicDNA-sc-2010-12-15-6491

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: early neurula

characteristic: ArrayExpress-DevelopmentalStage

text: rax+/+

characteristic: ArrayExpress-Genotype

text: anterior half

characteristic: ArrayExpress-OrganismPart

text: wt

characteristic: ArrayExpress-Phenotype

text: Xenopus Tropicalis

text: SC

text: public

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: Xenopus tropicalis Embryo

text: Xenopus (Silurana) tropicalis


text: early neurula

text: rax-/-

text: anterior half

text: abnormal eye development

text: Xenopus Tropicalis

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: Xenopus tropicalis Embryo

text: Xenopus (Silurana) tropicalis


text: Saccharomyces cerevisiae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 4WAY_Diploid_Heat_R2_F12_T8-sc-2011-03-24T13:52:20Z-1107309

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 4WAY_Diploid_Mock_R2_F12_T4-sc-2011-03-24T13:52:19Z-1107307

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 4WAY_Diploid_Mock_R2_F12_T0-sc-2011-03-24T13:52:19Z-1107306

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

characteristic: SRA accession

text: 4WAY_Diploid_HU_R2_F12_T8-sc-2011-03-24T13:52:22Z-1107311

characteristic: Submitter Id

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Wine_R2_F12_T1-sc-2011-03-24T13:52:21Z-1107310

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Haploid_Heat_R2_F12_T4-sc-2011-03-24T13:52:20Z-1107308

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: INRA-LIPM

text: public

text: common sunflower

text: The sunflower INRA inbred line PSC8 (susceptible line) was infected by Plasmopara halstedii (race 710) in a containment culture chamber. The infection method was previously described by Mouzeyar et al.[35]. Plants were harvested at 14 dpi and immediately frozen in liquid nitrogen and stored.

characteristic: description

text: first pair of true leaves initiation stage

characteristic: development stage

characteristic: ecotype

characteristic: individual name

text: Plasmopara halstedii race 710

characteristic: infection

text: Helianthus annuus

text: Helianthus annuus

text: 14 dpi

characteristic: time point

text: whole plantlet

characteristic: tissue

type: has member


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA-LIPM

text: public

text: common sunflower

text: The sunflower INRA inbred line XRQ (resistant line) was infected by Plasmopara halstedii (race 710) in a containment culture chamber. The infection method was previously described by Mouzeyar et al.[35]. Plants were harvested at 14 dpi and immediately frozen in liquid nitrogen and stored.

text: XRQ

text: XRQ

text: Plasmopara halstedii race 710

text: Helianthus annuus

text: Helianthus annuus

text: 14 dpi

text: whole plantlet


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: PDP1619248-sc-2011-04-19T13:23:02Z-1005128

text: house mouse

text: Mus musculus

text: Mus musculus


text: Saccharomyces cerevisiae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 4WAY_Diploid_Dessication_R1_F12_T6-sc-2011-08-16T11:27:34Z-1258833

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

characteristic: SRA accession

text: 4WAY_Diploid_Dessication_R1_F12_T3-sc-2011-08-16T11:27:34Z-1258832

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Cold_R3_F12_T4-sc-2011-08-16T11:27:33Z-1258831

text: baker's yeast

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Cold_R4_F12_T4-sc-2011-08-16T11:27:40Z-1258843

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Cold_R2_F12_T4-sc-2011-08-16T11:27:39Z-1258842

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Dessication_R2_F12_T6-sc-2011-08-16T11:27:40Z-1258845

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Dessication_R2_F12_T3-sc-2011-08-16T11:27:40Z-1258844

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Haploid_Mock_R1_F12_T4-sc-2011-08-16T11:27:28Z-1258823

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Mock_R1_F12_T8-sc-2011-08-16T11:27:29Z-1258824

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Wine_R2_F12_T2-sc-2011-08-16T11:27:38Z-1258840

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Haploid_Heat_R1_F12_10-sc-2011-08-16T11:27:30Z-1258826

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_HU_R1_F12_T10-sc-2011-08-16T11:27:31Z-1258827

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_HU_R2_F12_T10-sc-2011-08-16T11:27:37Z-1258839

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Haploid_Heat_R2_F12_10-sc-2011-08-16T11:27:36Z-1258838

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Wine_R1_F12_T2-sc-2011-08-16T11:27:31Z-1258828

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Mock_R2_F12_T8-sc-2011-08-16T11:27:35Z-1258836

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Cold_R1_F12_T4-sc-2011-08-16T11:27:32Z-1258830

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Haploid_Mock_R2_F12_T4-sc-2011-08-16T11:27:35Z-1258835

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Dessication_R1_F12_T9-sc-2011-08-16T11:27:35Z-1258834

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: U2OS cells, were grown in DMEM supplemented with 10% foetal bovine serum. ChIP was performed as previously described (Marais et al., 2010) using ~8-10 x 10+7 U2OS-FOXK2-HF cells stably expressing FOXK2 tagged with Flag and His tags (~4×150 mm plates) or stable U2OS-HF cells containing an empty vector encoding the same tags. Marais A, Ji Z, Child ES, Krause E, Mann DJ, Sharrocks AD. 2010. Cell cycle-dependent regulation of the Forkhead transcription factor FOXK2 by CDK-cyclin complexes. J Biol Chem. 285: 35728-35739. Anti-Flag (Sigma-Aldrich, F3165)

characteristic: description

text: Osteosarcoma

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: ArrayExpress

text: human

text: This sample has been re-named

text: Osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


characteristic: External Id

text: BGI

text: public

text: ArrayExpress

text: human

text: Protocols: Prostate tumor and adjacent normal tissues from 14 patients obtained from Shanghai Changhai Hospital were selected as the discovery cohort for RNA sequencing. RNA-seq libraries were constructed using the Illumina kit following the manufacturer's standard protocol. The poly(A) containing RNA were enriched from 5ug total RNA and fragmented to 200-250nt in size via fragmentation buffer at 70 C for 90 seconds. The first cDNA strand was synthesized with random hexamer primers using Super transcriptase II and the second-strand synthesis was performed by incubation with RNase H and DNA polymerase. End-repair was performed using Klenow polymerase, T4 DNA polymerase and T4 polynucleotide kinase. The end-repaired cDNA fragments were 3- adenylated with Klenow exo- and dATP, followed by Illumina PE adapters ligation on both ends. After recovery from agarose gel, the ligation products were amplified by 15 cycles of PCR with Phusion polymerase. The final size and yield of each library was validated on Agilent Technologies 2100 Bioanalyzer and q-PCR separately, and was diluted to 2.5pM for sequencing on a single lane of an Illumina HiSeq2000 flowcell.

text: Homo sapiens

text: Homo sapiens


text: BGI

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: Protocols: U2OS cells, were grown in DMEM supplemented with 10% foetal bovine serum. FAIRE was performed as described previously (Giresi et al., 2007; Eeckhoute et al., 2009) with slight modifications. 5 x 107 U2OS cells were cross-linked with 1% formaldehyde for 10 min at room temperature. The same amount of non-cross-linked cells was used as control. Glycine was added to a final concentration of 125 mM and the cells were rinsed with cold PBS and harvested by scraping into cold PBS containing protease inhibitors. Cells were then lysed with lysis buffer (2% Triton X-100, 1% SDS, 100 mM NaCl, 10 mM Tris-Cl at pH 8.0, 1 mM EDTA) containing a protease inhibitor cocktail (Roche) and sonicated for 15 min (30 sec on/off cycles) using a Bioruptor (Diagenode) set up at the highest intensity. After centrifugation at 13,000g for 10 min at 4C to precipitate cellular debris, 50 ul lysate were taken as input control. The soluble chromatin was isolated and subjected to three consecutive phenol-chloroform extractions (Sigma, P3803). Each time, the aqueous phase was recovered and mixed with an equal volume of phenol-chloroform. After vortexing, the mixture was centrifuged at 13,000g for 5 min and the aqueous phase was recovered. Samples were then incubated overnight at 65C to reverse cross linking. DNA was finally purified using a PCR purification kit (QIAGEN). DNA were quantified using a Nanodrop and 5 ng DNA was used as qPCR templates.

text: Osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: input


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: Osteosarcoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: faire


text: public

characteristic: INSDC status

tag: Namespace:SPANISH NATIONAL CENTER FOR BIOTECHNOLOGY - CSIC

text: Cell line

characteristic: bio source type

text: Coriel Cell Repositories

characteristic: biosourceprovider

text: ArrayExpress

text: Lymphocytes

characteristic: cell type

text: human

text: Protocols: DNA was extracted from cell lines or periferal blood lymphocytes using standard methods

text: Control

text: Homo sapiens

text: Homo sapiens

text: Extracted DNA

characteristic: organism part

text: Homo sapiens

text: Male


text: SPANISH NATIONAL CENTER FOR BIOTECHNOLOGY - CSIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Cell line

text: Coriel Cell Repositories

text: ArrayExpress

characteristic: broker name

text: Lymphocytes

text: human

characteristic: common name

text: Control

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Extracted DNA

text: Homo sapiens

text: Female


text: public

text: 29 years

characteristic: age

text: Peripheral blood

text: Patient

text: ArrayExpress

text: Lymphocytes

text: human

characteristic: description

text: Hereditary pheochromocytoma

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: Extracted DNA

text: Homo sapiens

text: Male

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 32 years

text: Peripheral blood

text: Patient

text: ArrayExpress

text: Lymphocytes

text: human

text: Hereditary pheochromocytoma

text: Homo sapiens

text: Homo sapiens

text: Extracted DNA

text: Homo sapiens

text: Male


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Cell line

characteristic: bio source type

text: Coriel Cell Repositories

characteristic: biosourceprovider

text: ArrayExpress

text: Lymphocytes

characteristic: cell type

text: human

text: Control

text: Homo sapiens

text: Homo sapiens

text: Extracted DNA

text: Homo sapiens

text: Male


text: male

characteristic: ArrayExpress-Sex

text: mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: genomic DNA

characteristic: sample description

text: Mus musculus


status: KILLED

text: SC

text: killed

characteristic: Sample Description

characteristic: Strain

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


E-MTAB-582:Nuclear RNA 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DKFZ-SFG

text: public

text: E-MTAB-582:Nuclear RNA 2

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

text: Protocols: RNA fractions were prepared after cell fractionation starting with 1.10e7 cells.RNA fraction were transformed into cDNA library with solexa adaptors using the standard Illumina protocol.

characteristic: description

text: Nuclear RNA 2

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Nuclear RNA 2

characteristic: title


E-MTAB-582:Soluble RNA 1

text: DKFZ-SFG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-582:Soluble RNA 1

text: ArrayExpress

text: HeLa

text: human

text: Soluble RNA 1

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Soluble RNA 1


E-MTAB-582:Chromatin RNA

text: DKFZ-SFG

text: public

characteristic: SRA accession

text: E-MTAB-582:Chromatin RNA

characteristic: Submitter Id

text: ArrayExpress

text: HeLa

text: human

characteristic: common name

text: Chromatin RNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Chromatin RNA


E-MTAB-582:Total RNA 1

text: DKFZ-SFG

text: public

text: E-MTAB-582:Total RNA 1

text: ArrayExpress

text: HeLa

text: human

text: Total RNA 1

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Total RNA 1


E-MTAB-582:F2 RNA 2

text: DKFZ-SFG

text: public

text: E-MTAB-582:F2 RNA 2

text: ArrayExpress

text: HeLa

text: human

text: F2 RNA 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: F2 RNA 2


E-MTAB-582:F2 RNA 1

text: DKFZ-SFG

text: public

text: E-MTAB-582:F2 RNA 1

text: ArrayExpress

text: HeLa

text: human

text: F2 RNA 1

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: F2 RNA 1


E-MTAB-582:Total RNA 2

text: DKFZ-SFG

text: public

text: E-MTAB-582:Total RNA 2

text: ArrayExpress

text: HeLa

text: human

text: Total RNA 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Total RNA 2


E-MTAB-582:Nuclear RNA 1

text: DKFZ-SFG

text: public

text: E-MTAB-582:Nuclear RNA 1

text: ArrayExpress

text: HeLa

text: human

text: Nuclear RNA 1

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Nuclear RNA 1


E-MTAB-582:Soluble RNA 2

text: DKFZ-SFG

text: public

text: E-MTAB-582:Soluble RNA 2

text: ArrayExpress

text: HeLa

text: human

text: Soluble RNA 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Soluble RNA 2


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: PDP5047657-sc-2011-04-11T09:31:03Z-1065453

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047730-sc-2011-04-13T18:08:16Z-1065406

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: PDP5047720-sc-2011-04-13T18:08:10Z-1065387

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PDP5047640-sc-2011-04-13T18:08:28Z-1065419

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

characteristic: External Id

text: SC

text: public

text: PDP5047629-sc-2011-04-13T18:08:21Z-1065397

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047729-sc-2011-04-13T18:08:16Z-1065405

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047648-sc-2011-04-13T18:08:33Z-1065436

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047638-sc-2011-04-13T18:08:26Z-1065414

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047650-sc-2011-04-13T18:08:34Z-1065440

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047718-sc-2011-04-13T18:08:09Z-1065383

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047630-sc-2011-04-13T18:08:21Z-1065398

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047728-sc-2011-04-13T18:08:15Z-1065403

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047719-sc-2011-04-13T18:08:10Z-1065385

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047649-sc-2011-04-13T18:08:34Z-1065438

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047655-sc-2011-04-11T09:31:02Z-1065450

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047639-sc-2011-04-13T18:08:27Z-1065417

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047622-sc-2011-04-11T09:30:59Z-1065382

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047642-sc-2011-04-13T18:08:29Z-1065423

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047621-sc-2011-04-11T09:30:58Z-1065380

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5081409-sc-2011-05-06T09:33:32Z-1103248

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047627-sc-2011-04-13T18:08:19Z-1065392

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047641-sc-2011-04-13T18:08:28Z-1065420

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047647-sc-2011-04-13T18:08:32Z-1065434

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047620-sc-2011-04-11T09:30:58Z-1065378

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047721-sc-2011-04-13T18:08:11Z-1065389

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047645-sc-2011-04-13T18:08:31Z-1065430

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047633-sc-2011-04-13T18:08:24Z-1065404

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047624-sc-2011-04-11T09:31:00Z-1065386

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047619-sc-2011-04-11T09:30:57Z-1065376

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047634-sc-2011-04-13T18:08:24Z-1065407

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047644-sc-2011-04-13T18:08:30Z-1065428

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047714-sc-2011-04-13T18:08:06Z-1065375

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047723-sc-2011-04-13T18:08:12Z-1065393

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047653-sc-2011-04-13T18:08:36Z-1065446

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047623-sc-2011-04-11T09:30:59Z-1065384

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047635-sc-2011-04-13T18:08:25Z-1065409

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047631-sc-2011-04-13T18:08:22Z-1065401

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047637-sc-2011-04-13T18:08:26Z-1065412

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047724-sc-2011-04-13T18:08:13Z-1065394

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047654-sc-2011-04-11T09:31:02Z-1065448

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047646-sc-2011-04-13T18:08:31Z-1065431

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047625-sc-2011-04-11T09:31:01Z-1065388

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047632-sc-2011-04-13T18:08:23Z-1065402

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047651-sc-2011-04-13T18:08:35Z-1065441

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: PDP5047716-sc-2011-04-13T18:08:08Z-1065379

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: PDP5047626-sc-2011-04-11T09:31:01Z-1065390

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083812-sc-2011-04-05T15:19:19Z-1105743

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083825-sc-2011-04-05T15:19:27Z-1105756

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083818-sc-2011-04-05T15:19:23Z-1105749

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083819-sc-2011-04-05T15:19:23Z-1105750

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083813-sc-2011-04-05T15:19:20Z-1105744

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083820-sc-2011-04-05T15:19:24Z-1105751

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083810-sc-2011-04-05T15:19:18Z-1105741

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083811-sc-2011-04-05T15:19:18Z-1105742

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083814-sc-2011-04-05T15:19:20Z-1105745

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083823-sc-2011-04-05T15:19:26Z-1105754

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083824-sc-2011-04-05T15:19:26Z-1105755

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083817-sc-2011-04-05T15:19:22Z-1105748

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083827-sc-2011-04-05T15:19:28Z-1105758

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: CDTCIC5083821-sc-2011-04-05T15:19:25Z-1105752

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: CDTCIC5164450-sc-2011-07-07T14:07:20Z-1197234

text: house mouse

text: Mus musculus

text: mammary tumor

characteristic: sample description

text: Mus musculus

characteristic: strain


Ulindi

text: MPI-EVA

text: public

text: Ulindi

text: pygmy chimpanzee

text: Individual Ulindi, Leipzig Zoo, Studbook#183

characteristic: description

text: Pan paniscus

text: Pan paniscus


MalouL

text: MPI-EVA

characteristic: INSDC center name

text: public

text: MalouL

text: pygmy chimpanzee

text: Collected at Lola Ya Bonobo sanctuary, Kinshasa, Democratic Republic of Congo

text: Pan paniscus

text: Pan paniscus


Likase

text: MPI-EVA

characteristic: INSDC first public

text: public

text: Likase

text: pygmy chimpanzee

text: Pan paniscus

text: Pan paniscus


text: Xenopus tropicalis

text: SC

characteristic: INSDC last update

text: public

text: XTEP5137762-sc-2011-06-15T20:13:19Z-1164267

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

characteristic: INSDC status

text: XTEP5092931-sc-2011-04-05T14:44:17Z-1115318

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

characteristic: SRA accession

text: XTEP5092932-sc-2011-04-05T14:44:18Z-1115319

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092930-sc-2011-04-05T14:44:16Z-1115317

characteristic: Submitter Id

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092940-sc-2011-04-05T14:44:23Z-1115327

text: western clawed frog

characteristic: common name

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

characteristic: ArrayExpress-Species

text: SC

text: public

text: XTEP5092939-sc-2011-04-05T14:44:22Z-1115326

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092938-sc-2011-04-05T14:44:22Z-1115325

text: western clawed frog

text: Xenopus (Silurana) tropicalis

characteristic: organism

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: XTEP5092933-sc-2011-04-05T14:44:18Z-1115320

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: XTEP5092941-sc-2011-04-05T14:44:24Z-1115328

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

characteristic: External Id

text: SC

text: public

text: XTEP5092942-sc-2011-04-05T14:44:25Z-1115329

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092937-sc-2011-04-05T14:44:21Z-1115324

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092934-sc-2011-04-05T14:44:19Z-1115321

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092929-sc-2011-04-05T14:44:16Z-1115316

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5137763-sc-2011-06-15T20:13:20Z-1164268

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Xenopus tropicalis

text: SC

text: public

text: XTEP5092936-sc-2011-04-05T14:44:21Z-1115323

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164266-sc-2011-08-11T16:44:32Z-1197050

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164261-sc-2011-08-11T16:44:29Z-1197045

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164258-sc-2011-08-11T16:44:26Z-1197042

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164265-sc-2011-08-11T16:44:32Z-1197049

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164259-sc-2011-08-11T16:44:27Z-1197043

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164264-sc-2011-08-11T16:44:31Z-1197048

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164260-sc-2011-08-11T16:44:28Z-1197044

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164262-sc-2011-08-11T16:44:29Z-1197046

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GDTMSC5164267-sc-2011-08-11T16:44:33Z-1197051

text: house mouse

text: Mus musculus

text: Mus musculus


text: IMSB

text: public

characteristic: base count

text: apple

text: Raw sequencing data (RSD) of 454 sequencing (quarter plate) of Procats28 (columnar type apple tree) shoot apical meristem (SAM) RNA collected in late May 2009

text: columnar

characteristic: growth habit

text: Malus domestica

characteristic: read count

text: Malus domestica


text: IMSB

text: public

text: apple

text: Raw sequencing data (RSD) of 454 sequencing (quarter plate) of A14-190 (normal type apple tree) shoot apical meristem (SAM) RNA collected in late May 2009

text: normal

text: Malus domestica

text: Malus domestica

characteristic: strain


text: IMSB

text: public

text: apple

text: Raw sequencing data (RSD) of Illumina sequencing (single lane) of Procats28 (columnar type apple tree) shoot apical meristem (SAM) RNA collected in late September 2009.

characteristic: description

text: columnar

text: Malus domestica

text: Malus domestica


text: IMSB

characteristic: INSDC center name

text: public

text: apple

text: Raw sequencing data (RSD) of Illumina sequencing (single lane) of A14-190 (normal type apple tree) shoot apical meristem (SAM) RNA collected in late May 2009.

text: normal

text: Malus domestica

text: Malus domestica


text: IMSB

characteristic: INSDC first public

text: public

text: apple

text: Raw sequencing data (RSD) of 454 sequencing (quarter plate) of Procats28 (columnar type apple tree) shoot apical meristem (SAM) RNA collected in late September 2009

text: columnar

text: Malus domestica

text: Malus domestica


E-MTAB-672:gorilla ChIP 2

text: CRUK-CRI

characteristic: INSDC last update

text: public

text: E-MTAB-672:gorilla ChIP 2

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: LCL

characteristic: cell type

text: western gorilla

text: Protocols: The EB_JC western gorilla LCL line was used for gorilla ChIP-seq assays as recently described (Schmidt, 2009). Briefly 1x10^8 cells were cross-linked with 1% formaldehyde and CTCF-bound DNA immunoprecipitated with a CTCF antibody (Millipore, 07-729).

text: Gorilla gorilla

text: Gorilla gorilla

text: Gorilla gorilla

text: female

characteristic: sex

text: gorilla ChIP 2

characteristic: title


E-MTAB-672:gorilla ChIP 1

text: CRUK-CRI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-672:gorilla ChIP 1

characteristic: Submitter Id

text: ArrayExpress

text: LCL

text: western gorilla

characteristic: common name

text: Gorilla gorilla

characteristic: organism

text: Gorilla gorilla

text: Gorilla gorilla

text: female

text: gorilla ChIP 1


E-MTAB-672:gorilla input 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CRI

text: public

text: E-MTAB-672:gorilla input 1

text: ArrayExpress

text: LCL

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla

text: Gorilla gorilla

text: female

text: gorilla input 1


text: female

characteristic: ArrayExpress-Sex

text: mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: FVB_offspring2_200a-sc-2011-05-12T15:51:25Z-1138766

text: house mouse

text: Mus musculus

text: genomic DNA

characteristic: sample description

text: Mus musculus


text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Resistant

characteristic: cisplatin sensitivity

text: human

text: Ovarian cancer cell line PEO23

characteristic: description

text: Relapse

characteristic: disease stage

text: Homo sapiens

characteristic: patient number

text: Homo sapiens


text: CRUK-CRI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sensitive

text: human

text: Ovarian cancer cell line PEO1

text: Post-treatment

text: Homo sapiens

text: Homo sapiens


text: CRUK-CRI

text: public

characteristic: Submitter Id

text: Resistant

text: human

characteristic: common name

text: Ovarian cancer cell line PEO4

text: Relapse

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: public

text: Sensitive

text: human

text: Ovarian cancer cell line PEO14

text: Pre-treatment

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: female

text: Mouse

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: MBC5139111-sc-2011-06-20T12:53:55Z-1165701

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

characteristic: ArrayExpress-Sex

text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: MBC5139109-sc-2011-06-20T12:53:53Z-1165699

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mouse

text: SC

characteristic: INSDC center name

text: public

text: MBC5139112-sc-2011-06-20T12:53:56Z-1165702

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mouse

text: SC

characteristic: INSDC first public

text: public

text: MBC5139113-sc-2011-06-20T12:53:57Z-1165703

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mouse

text: SC

characteristic: INSDC last update

text: public

text: MBC5139108-sc-2011-06-20T12:53:51Z-1165698

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mouse

text: SC

text: public

text: MBC5139106-sc-2011-06-20T12:53:47Z-1165696

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mouse

text: SC

text: public

text: MBC5139110-sc-2011-06-20T12:53:54Z-1165700

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: NODShiLtJ_offspring2_500-sc-2011-07-20T11:42:53Z-1241775

text: house mouse

text: Mus musculus

text: genomic DNA

characteristic: sample description

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: WSBEiJ_offspring2_500-sc-2011-07-20T11:42:55Z-1241779

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: BALBcJ_offspring2_500-sc-2011-07-20T11:35:53Z-1241768

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: C57BL6NJ_offspring2_500-sc-2011-07-20T11:36:14Z-1241770

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: CBAJ_offspring2_500-sc-2011-07-20T11:36:42Z-1241772

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: AJ_offspring2_500-sc-2011-07-20T11:35:35Z-1241766

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: SpretusEiJ_offspring2_500-sc-2011-07-20T11:42:55Z-1241778

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: AKRJ_offspring2_500-sc-2011-07-20T11:35:43Z-1241767

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: NZOHiLtJ_offspring2_500-sc-2011-07-20T11:42:54Z-1241776

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: PWKPhJ_offspring2_500-sc-2011-07-20T11:42:54Z-1241777

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: DBA2J_offspring2_500-sc-2011-07-20T11:42:51Z-1241773

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: 129S1SvImJ_offspring2_500-sc-2011-07-20T11:35:26Z-1241765

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: female

text: mus musculus

text: SC

text: public

text: LPJ_offspring25200-sc-2011-07-20T11:42:52Z-1241774

text: house mouse

text: Mus musculus

text: genomic DNA

text: Mus musculus


text: NCGR

text: public

text: rice

text: GP

characteristic: cultivar

text: GP

characteristic: description

text: Oryza sativa

text: Oryza sativa


text: NCGR

text: public

text: rice

text: GP

text: GP

text: Oryza sativa

text: Oryza sativa


text: UNIVERSITY OF MANCHESTER

text: public

text: ArrayExpress

characteristic: broker name

text: second branchial arch

characteristic: cell line

text: house mouse

text: Protocols: The preparation of the material was as described in Kutejova et al., 2008. Branchial arches are dissected (the whole tissue), crosslinked and frozen in order to pool enough for ChIP. Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982. ChIP assays were performed as described in Kutejova et al., 2008, with the following modifications for ChIP-seq. The crosslinked material was sonicated to 300 bp fragments (Vibracell sonicator, Sonics: 8 times for 10 seconds at 50% output). Immunoprecipitation was performed starting from 12 pairs of second branchial arches from E11.5 embryos and incubating overnight at 4oC with 3 ug of anti-Hoxa2 antibodies or control IgG (Kutejova et al., 2008), followed by protein A beads (Invitrogen). Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: mixed sex

characteristic: sex

characteristic: title


text: Mus Musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: ESC_wildtype-sc-2011-06-29T09:41:19Z-1191978

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Stone_Deaf-sc-2011-06-20T14:54:30Z-1166050

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

text: ESC_wildtype-sc-2011-06-29T09:41:19Z-1191979

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: Stone_Deaf-sc-2011-06-20T14:54:29Z-1166049

text: house mouse

text: Mus musculus

text: Mus musculus


text: Gorilla gorilla

text: SC

text: public

text: Matadi_RR-sc-2011-06-23T16:22:34Z-1155721

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: Gorilla gorilla

text: SC

text: public

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: Gorilla beringei

text: SC

text: public

text: Victoria_RR-sc-2011-06-23T16:22:38Z-1155726

text: eastern gorilla

text: Gorilla beringei

text: Gorilla beringei


text: Gorilla gorilla

text: SC

text: public

text: Floquet_RR-sc-2011-06-23T16:22:32Z-1155718

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: Gorilla gorilla

text: SC

text: public

text: Murphy_RR-sc-2011-06-28T16:31:42Z-1180456

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: Gorilla gorilla

text: SC

text: public

text: Effie_RR-sc-2011-06-23T16:22:33Z-1155720

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: Gorilla beringei

text: SC

text: public

text: Mukisi_RR-sc-2011-06-23T16:22:36Z-1155725

text: eastern gorilla

text: Gorilla beringei

text: Gorilla beringei


text: Gorilla gorilla

text: SC

text: public

text: Kesho_RR-sc-2011-06-23T16:22:35Z-1155722

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


text: Gorilla gorilla

text: SC

text: public

text: BiKira_RR-sc-2011-06-23T16:22:35Z-1155723

text: western gorilla

text: Gorilla gorilla

text: Gorilla gorilla


E-MTAB-714:D immitis adult female

text: ED

text: public

text: E-MTAB-714:D immitis adult female

text: ArrayExpress

text: dog heartworm nematode

text: Protocols: RNA was extracted from the worms using the protocol described in Qiagen miRNeasy Mini Handbook October 2007. Several steps were carried out to convert total RNA into a library of template molecules suitable for high throughput DNA sequencing. The first step involves purifying the poly-A containing mRNA molecules using poly-T oligo-attached magnetic beads. Following purification, the mRNA is fragmented into small pieces using divalent cations under elevated temperature. Then, the cleaved RNA fragments are copied into first strand cDNA using reverse transcriptase and a high concentration of random hexamer primers. This is followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. Finally, the short cDNA fragments are prepared for sequencing on the Illumina Genome Analyzer IIx.

characteristic: description

text: adult

characteristic: developmental stage

text: Dirofilaria immitis

text: Dirofilaria immitis

text: Dirofilaria immitis

text: female

text: D immitis adult female


E-MTAB-714:D immitis adult male

text: ED

text: public

text: E-MTAB-714:D immitis adult male

text: ArrayExpress

characteristic: broker name

text: dog heartworm nematode

text: adult

text: Dirofilaria immitis

text: Dirofilaria immitis

text: Dirofilaria immitis

text: male

text: D immitis adult male


text: UCL-Gen

text: public

characteristic: StrainOrLine

text: ArrayExpress

text: fission yeast

text: Protocols: Total RNA was isolated from S. pombe cells using a hot phenol method followed by phenol-chloroform extractions, and precipitation as described (Lyne et al., 2003, BMC Genomics 4, 27.). 10ug total RNA was used as starting material for strand-specific RNA-seq library preparation using an unreleased early version provided by Illumina of the Illumina TruSeq Small RNA Sample Prep Kit. Briefly: poly(A)+ RNA was enriched by two rounds of poly(dT) Sera-Mag magnetic beads purification. Enriched poly(A)+ RNA was then fragmented to an average size of 200nt. Fragmented RNA was 3' de-phosphorylated with Antartic phosphatase and 5' phosphorylated with polynucleotide kinase this treatment prepares RNA fragments for subsequent ligation of Illumina RNA adaptors to their 5' and 3' ends using a 3' RNA ligase and a T4 RNA ligase, respectively. First strand cDNA was produced using a primer specific for the Illumina 3' adaptor. The library was finally amplified with 15 cycles of PCR using primers specific for the Illumina adaptors and purified using SPRI-beads (Agencourt, Beckman Coulter). Libraries size distributions and concentrations were determined on an Agilent Bioanalyzer

text: h+ ade6-M216 leu1-32 ura4-D18 his3-D1

characteristic: genotype

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: sex


text: UCL-Gen

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fission yeast

text: h- ade6-M216 leu1-32 ura4-D18 his3-D1 delta pab2::kanMX6

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: NCGR

text: public

characteristic: Submitter Id

text: 14 days

characteristic: age

text: ArrayExpress

text: rice

characteristic: common name

text: Protocols: Oryza sativa cv. Nipponbare seeds were used in all experiments. Seeds germinated at 28 C in dark for 2 days were transferred to plant growth chamber to grow for 14 days under controlled conditions (12 h light 30 C/12h dark 24 C cycles) to harvest the seedlings. For stress treatments, 14-day-old seedlings were incubated in solutions containing 20% PEG-6000, 200 mM NaCl, for 4 h at 30 C, respectively. For cold treatment seedlings at the same developmental stage were treated at 4 C for 24 h in dark. Total genomic DNA was extracted from leaf tissues using DNase (New England Biolabs), and total RNA was isolated using the TRIzol reagent (Invitrogen). The OligoTex mRNA midi kit (Qiagen) was used to purify poly(A) mRNA from the total RNA samples. Next, mRNAs were fragmented by the RNA fragmentation kit (Ambion). The first cDNA strand was synthesized using random hexamer primers and the second strand cDNA was synthesized where dUTP was used instead of dTTP. Then the dUTP was digested. Small RNAs, ranging from 18-35 bp were enriched by polyacrylamide gel electrophoresis, and ligated to 5' and 3' adapters. The ligation product was reverse-transcript into cDNA, which was then amplified by 15 PCR cycles.

text: salt stress

characteristic: growth condition

text: Oryza sativa

text: Oryza sativa

text: seedling

characteristic: organism part

text: Oryza sativa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NCGR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 14 days

text: ArrayExpress

text: rice

text: drought stress

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: seedling

text: Oryza sativa


text: NCGR

characteristic: INSDC last update

text: public

text: 14 days

text: ArrayExpress

characteristic: broker name

text: rice

characteristic: description

text: normal conditions

text: Oryza sativa

text: Oryza sativa

text: seedling

text: Oryza sativa


text: NCGR

text: public

characteristic: INSDC status

text: 14 days

text: ArrayExpress

text: rice

text: cold stress

text: Oryza sativa

text: Oryza sativa

text: seedling

text: Oryza sativa


text: MPI-EVA

text: public

characteristic: SRA accession

text: chimpanzee

text: Individual Chimpanzee, liver

text: Pan troglodytes

text: Pan troglodytes


text: MPI-EVA

text: public

text: chimpanzee

text: Individual Chimpanzee, brain

text: Pan troglodytes

text: Pan troglodytes


text: MPI-EVA

text: public

text: chimpanzee

text: Individual Chimpanzee, heart

text: Pan troglodytes

text: Pan troglodytes


text: MPI-EVA

text: public

text: chimpanzee

text: Individual Chimpanzee, kidney

text: Pan troglodytes

text: Pan troglodytes


text: MPI-EVA

text: public

text: human

text: Individual Human, liver

text: Homo sapiens

text: Homo sapiens


text: MPI-EVA

text: public

text: human

text: Individual Human, kidney

text: Homo sapiens

text: Homo sapiens


text: MPI-EVA

text: public

text: human

text: Individual Human, testis

text: Homo sapiens

text: Homo sapiens


text: MPI-EVA

text: public

text: human

text: Individual Human, brain

text: Homo sapiens

text: Homo sapiens


text: MPI-EVA

text: public

text: human

text: Individual Human, heart

text: Homo sapiens

text: Homo sapiens


text: MPI-EVA

text: public

text: chimpanzee

text: Individual Chimpanzee, testis

text: Pan troglodytes

text: Pan troglodytes


text: LGTF

text: public

characteristic: bio source type

text: Clontech

characteristic: biosourceprovider

text: ArrayExpress

text: human

text: Protocols: RNA from tissues was isolated by a modified guanidium thiocynate methods followed by polyA+ RNA selection with two rounds of oligo(dT)-cellulose columns. Selected targets were then amplified by RT-PCR.

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: LGTF

text: public

characteristic: Submitter Id

text: Clontech

text: ArrayExpress

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: LGTF

text: public

text: Clontech

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: muscle

characteristic: organism part

text: Homo sapiens

text: male


characteristic: External Id

text: LGTF

characteristic: INSDC center name

text: public

text: Clontech

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


text: LGTF

characteristic: INSDC first public

text: public

text: Clontech

text: ArrayExpress

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart

text: Homo sapiens

text: male


text: LGTF

characteristic: INSDC last update

text: public

text: Clontech

text: ArrayExpress

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


text: LGTF

text: public

characteristic: INSDC status

text: Clontech

text: ArrayExpress

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens


text: LGTF

text: public

characteristic: SRA accession

characteristic: bio source type

text: Clontech

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: testis

text: Homo sapiens

text: male


text: EMBL

text: public

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: MiliDAH and Miwi2DAH mice were crossed with Oct4/GFP trangenic mice to label germ cells with eGFP. To isolate E16.5 and postnatal day 7 germ cells, single cell suspensions of testis were obtained by two step enzymatic digestion and GFP-positive FACS-sorted. Mili and Miwi2 RNPs were immunoprecipitated as described in Reuter, M. et al. (2009). Small RNA libraries were generated with the protocol described in Hafner M. et al. (2008) but using adaptors suitable for sequencing on the Ilumina platform.

text: MiliDAH

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: title


text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ura3_133-sc-2011-07-14T16:07:31Z-1232710

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

characteristic: INSDC last update

text: public

text: Ura3_132-sc-2011-07-14T16:07:30Z-1232709

text: baker's yeast

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

characteristic: INSDC status

text: Ura3_127-sc-2011-07-14T16:07:26Z-1232704

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

characteristic: SRA accession

text: Ura3_120-sc-2011-07-14T16:07:22Z-1232698

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_130-sc-2011-07-14T16:07:28Z-1232707

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_131-sc-2011-07-14T16:07:30Z-1232708

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_123-sc-2011-07-14T16:07:25Z-1232701

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_129-sc-2011-07-14T16:07:28Z-1232706

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_122-sc-2011-07-14T16:07:23Z-1232700

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_128-sc-2011-07-14T16:07:27Z-1232705

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_126-sc-2011-07-14T16:07:26Z-1232703

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: Ura3_124-sc-2011-07-14T16:07:25Z-1232702

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: CRUK-CRI

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial

characteristic: cell type

text: human

text: Protocols: MCF-7 cells were grown in DMEM containing 10% heat-inactivated FBS, 2 mM L glutamine, 50 U/ml penicillin and 50 _g/ml streptomycin and ZR75-1 cells were grown in RPMI containing 10% heat-inactivated FBS, 2 mM L glutamine, 50 U/ml penicillin and 50 _g/ml streptomycin. MCF10A cells were maintained in Mammary Epithelium Cell Growth Medium bullet kit (Clonetics, Lonza, MD, USA), containing mammary epithelium basal medium supplemented with bovine pituitary extract, human epidermal growth factor, hydrocortisone and GA-1000 (Gentamicin Sulfate and Amphotericin-B). To hormone deprive the cells, cells were grown in steroid-depleted medium for three days and then treated with vehicle (ethanol), 100 nM estrogen or 1 uM tamoxifen for 45 minutes or three hours. The antibodies used were anti-ER (sc-543) from Santa Cruz Biotechnologies and anti-CTCF (07-729) from Millipore. At least four 15 cm dishes of cells were used per chromatin immunoprecipitation (ChIP) and samples were processed according to standard ChIP procedures. The CTCF ChIP samples were performed as described in Carroll, 2005, Cell and the ER ChIP samples were performed as described in Schmidt, 2009, Methods. The immunoprecipitated DNA was subsequently amplified as previously described for Illumina sequencing Schmidt, 2009, Methods.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

text: SDU

text: public

characteristic: Submitter Id

text: ArrayExpress

text: myoblast

text: house mouse

text: Protocols: DMEM with 10% fetal bovine serum at 37C with 5% CO2. Antibodies to Cygbp1 (3B1) and Ptbp1 (N20) were purchased from Santa Cruz Biotechnology. Anti-Mbnl1 rabbit serum (A2764) was a kind gift from Dr. Charles A. Thornton at University of Rochester. C2C12 cells were UV-irradiated at 400 mJ and whole-cell lysates were prepared with lysis buffer (50 nM Tris-HCl pH 7.4, 100mM NaCl, 1mM MgCl2, 0.1mM CaCl2, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS). The extracts were treated with 30 uL of RNase-free DNaseI (Qiagen) for 5 min at 37C, and subsequently treated with dilute RNaseA (Ambion) at a final dilution of 1:1000 for 10 min at 37C. After centrifugation at 14,000 rpm for 20 min at 4C, 2 ug of specific antibody was added to the supernatant and incubated at 4C. After 2 hours, 20 uL of Dynabeads protein G was added to the lysate and incubated for 1 hour at 4C. Then, beads were washed 6 times and the trimmed input RNA on the beads was ligated to the 3' RNA linker at 15C overnight. Beads were then washed and incubated with polynucleotide kinase and radioactive ATP to label the cross-linked RNA. The protein-RNA complexes were separated by NuPAGE (Invitrogen) and electroeluted. The electroeluate was digested with 4 mg/mL proteinase K, and the RNA was recovered by acidic phenol/chloroform extraction and ethanol precipitation. The recovered RNA was ligated to the 5' RNA linker at 15C for 8 hours and was recovered by acidic phenol/chloroform extraction and ethanol precipitation after DNaseI treatment. RNA was reverse-transcribed and PCR-amplified. Gel-purified amplicons from the primary RT-PCR were reamplified for 10-15 cycles, and were purified after Exo-SAP (USB) treatment. Quality and quantity of PCR products were analyzed by the Agilent 2100 Bioanalyzer. Library fragment size: 70-150bp

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: heterozygous

characteristic: ArrayExpress-Genotype

text: tail

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: _TAC16_1g-sc-2011-07-27T10:48:11Z-1247914

text: house mouse

text: Mus musculus

text: mouse tail genomic DNA

characteristic: sample description

text: Mus musculus


text: heterozygous

text: tail

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TAC1_1d_-sc-2011-07-27T10:48:10Z-1247912

text: house mouse

characteristic: common name

text: Mus musculus

text: mouse tail genomic DNA

text: Mus musculus


text: heterozygous

text: tail

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: TAC2_3a_-sc-2011-07-27T10:48:11Z-1247913

text: house mouse

text: Mus musculus

characteristic: organism

text: mouse tail genomic DNA

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: TAU

text: public

text: human

text: Resequencing deafness genes

characteristic: description

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: HOM

characteristic: ArrayExpress-Genotype

text: intestine

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Hom_H3K4_input-sc-2012-10-22T13:07:41Z-5221

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: AM539_HOM_H3K4me3_input-sc-2012-10-22T13:07:48Z-7677

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

characteristic: ArrayExpress-Immunoprecipitate

text: intestine

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: AM_519_WT_H3K4-sc-2012-10-22T13:08:04Z-9445

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

characteristic: sample description

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AM635_HOM_H3K4me3-sc-2012-10-22T13:07:45Z-7672

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: AM_521_WT_H3K4-sc-2012-10-22T13:08:01Z-9441

text: house mouse

characteristic: common name

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: AM_537_WT_Input-sc-2012-10-22T13:07:56Z-9434

text: house mouse

text: Mus musculus

characteristic: organism

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM541_WT_H3K4me3_input-sc-2012-10-22T13:07:44Z-7671

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: Am_149_HOM_Input-sc-2012-10-22T13:08:00Z-9440

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


characteristic: ENA-CHECKLIST

text: HEINRICH HEINE UNIVERSITY DUESSELDORF

text: public

tag: Namespace:HEINRICH HEINE UNIVERSITY DUESSELDORF

characteristic: collection date

text: protists associated with Arabidopsis thaliana

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

characteristic: investigation type

text: uncultured oomycete

text: plant-associated

characteristic: plant-associated environmental package

text: Protist Microbiome

characteristic: project name

text: uncultured oomycete

text: Illumina

characteristic: sequencing method

characteristic: target gene

text: Protist microbiome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HEINRICH HEINE UNIVERSITY DUESSELDORF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: terrestrial biome

text: organic feature

text: leaf

text: Germany

text: metagenome

text: uncultured oomycete

characteristic: organism

text: plant-associated

text: Protist Microbiome

text: uncultured oomycete

text: Illumina

text: Protist microbiome


characteristic: ENA-CHECKLIST

text: HEINRICH HEINE UNIVERSITY DUESSELDORF

text: public

characteristic: collection date

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: root matter

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host taxid

text: metagenome

text: uncultured oomycete

text: plant-associated

text: Protist Microbiome

text: uncultured oomycete

text: Illumina

text: Protist microbiome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SDAU, Sardarkrushinagar

characteristic: INSDC center name

text: public

tag: Namespace:SDAU, Sardarkrushinagar

text: Cage system flock A Diseased 4-6

text: host-associated

text: Trachea

text: lavage

text: India

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bird metagenome

text: Respiratory disease complex

characteristic: project name

text: bird metagenome

text: semiconducting

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

text: SDAU, Sardarkrushinagar

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Cage system flock A Diseased

characteristic: description

text: host-associated

text: Trachea

text: lavage

text: India

text: host-associated

text: metagenome

text: bird metagenome

characteristic: organism

text: Respiratory disease complex

text: bird metagenome

text: semiconducting


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: thale cress

characteristic: common name

text: Arabidopsis thaliana seedlings grown on GM medium in long day photoperiod at 22°C

characteristic: dev stage

text: Col-0 wild-type

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedlings

characteristic: tissue type

text: H3K27me3 ChIP-seq Col-0 Replicate 1


characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: INSDC center name

text: public

text: thale cress

text: Col-0 wild-type

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedlings

text: H3K27me3 ChIP-seq Col-0 replicate 2


characteristic: ENA-CHECKLIST

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedlings

text: H3K27me3 ChIP-seq trb1/2/3 Replicate 1

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedlings

text: H3K27me3 ChIP-seq trb1/2/3 replicate 2


text: SDAU, Sardarkrushinagar

text: public

characteristic: INSDC status

characteristic: SRA accession

text: deep litter system flock D healthy (19-21) & diseased (22-24)broiler

text: host associated

characteristic: environment (biome)

text: respiratory tract

characteristic: environment (feature)

text: TBA (Tracheo-Broncho-Alveolar) lavage

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: bird metagenome

text: Respiratory disease complex

characteristic: project name

text: bird metagenome

text: semiconduction

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: double mutant eol1-1 lhp1-3


Cercmock

characteristic: ENA-CHECKLIST

text: HEINRICH HEINE UNIVERSITY DUESSELDORF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cercmock

text: Cercozoa mock community

characteristic: description

text: Uncultured Cercozoa

text: Uncultured Cercozoa

text: Protist microbiome

characteristic: title


text: HEINRICH HEINE UNIVERSITY DUESSELDORF

text: public

text: Oomycete mock community without Albugo DNA

text: uncultured oomycete

text: uncultured oomycete

text: Protist microbiome


text: HEINRICH HEINE UNIVERSITY DUESSELDORF

text: public

text: Oomycete mock community with Albugo DNA

text: uncultured oomycete

text: uncultured oomycete

text: Protist microbiome


text: Faculty of medecine and pharmacy RABAT

text: public

tag: Namespace:Faculty of medecine and pharmacy RABAT

text: Jean Uwingabiye and Mostafa Elouennass.

characteristic: collected by

characteristic: collection date

text: Whole Genome Sequence of Multidrug-Resistant Acinetobacter baumannii Strain ABE27_M Isolated from a Moroccan hospital ventilator

text: Morocco

characteristic: geographic location (country and/or sea)

text: Hospital ventilator

characteristic: isolation source

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: strain

text: Whole-Genome Sequence of Multidrug-Resistant Acinetobacter baumannii Strain ABE27_M Isolated from Morocco


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Faculty of medecine and pharmacy RABAT

text: public

text: Jean Uwingabiye and Mostafa Elouennass.

text: Whole Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii Strain ABE21_M isolated from a Moroccan hospital ventilator

text: Morocco

text: Hospital ventilator

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Whole-Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii Strain ABE21_M isolated from Morocco


text: Faculty of medecine and pharmacy RABAT

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Jean Uwingabiye and Mostafa Elouennass.

text: Whole-Genome Sequencing of Multidrug-Resistant Acinetobacter baumannii strain AC13_M Isolated from Anal margin

text: Morocco

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Anal margin

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Whole Genome Sequence of Multidrug-Resistant Acinetobacter baumannii strain AC13_M From Morocco


characteristic: ENA-CHECKLIST

text: Faculty of medecine and pharmacy RABAT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Jean Uwingabiye and Mostafa Elouennass.

text: Whole Genome Sequence of Multidrug-Resistant of Acinetobacter baumannii strain AC40_M Isolated from Anal margin

text: Morocco

text: diseased

text: Homo sapiens

text: Anal margin

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

text: Whole Genome Sequence of Multidrug-Resistant of Acinetobacter baumannii strain AC40_M Isolated from morocco


text: Faculty of medecine and pharmacy RABAT

text: public

characteristic: SRA accession

text: Department of Bacteriology, Mohammed V Military Teaching Hospital, Research Unit, Epidemiology and Bacterial resistance, Rabat Medical and Pharmacy School, Mohammed V University, Rabat, Morocco

characteristic: collected by

characteristic: collection date

text: Whole Genome Sequence of an Extensively Drug-Resistant Acinetobacter baumannii Strain AC15_M from a Urinary Tract Infection

characteristic: description

text: Morocco

text: diseased

text: Homo sapiens

text: urine

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Whole Genome Sequence of an Extensively Drug-Resistant Acinetobacter baumannii Strain AC15_M Isolated from Morocco

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Faculty of medecine and pharmacy RABAT

text: public

text: Department of Bacteriology, Mohammed V Military Teaching Hospital, Research Unit, Epidemiology and Bacterial Resistance, Rabat Medical and Pharmacy School, Mohammed V University, Rabat, Morocco.

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp02_M Isolated from a Vaginal swab

text: Morocco

characteristic: geographic location (country and/or sea)

text: healthy

text: Homo sapiens

text: Vaginal swab

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: strain

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp02_M from Morocco


characteristic: External Id

text: Faculty of medecine and pharmacy RABAT

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp03_M Isolated from a Urinary Tract Infection

text: Morocco

text: healthy

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp03_M from Morocco


characteristic: ENA-CHECKLIST

text: Faculty of medecine and pharmacy RABAT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp04_M Isolated from a Urinary Tract Infection

text: Morocco

text: diseased

text: Homo sapiens

characteristic: isolate

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp04_M from Morocco


text: Faculty of medecine and pharmacy RABAT

text: public

characteristic: SRA accession

characteristic: collected by

characteristic: collection date

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp06_M Isolated from a Urinary Tract Infection

characteristic: description

text: Morocco

text: healthy

text: Homo sapiens

text: urine

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Whole Genome Sequence of Klebsiella pneumoniae Strain Kp06_M from Morocco


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Centre national de la recherche scientifique

text: Anse Bertrand

text: Guadeloupe

characteristic: locality

text: Aedes aegypti aegypti

text: Aedes aegypti aegypti

text: Caribbean invasive population

characteristic: title


characteristic: External Id

text: CHUV-UNIL

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Kingella negevensis

text: Kingella negevensis

text: A new Kingella species found in a vaginal swab


characteristic: ENA-CHECKLIST

text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Listeria sp. CLIP 2016/00682

text: Listeria sp. CLIP 2016/00682

text: Listeria sp. CLIP 2016/00682


High Centered-50-Organic

text: Ecology Department

characteristic: INSDC first public

text: public

text: High Centered-50-Organic

tag: Namespace:Ecology Department

text: High Centered-50-Organic

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: NGEE Arctic Polygons

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: NGEE Arctic Polygons


High Centered-53-Organic

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: High Centered-53-Organic

characteristic: collection date

text: High Centered-53-Organic

characteristic: description

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

text: metagenome

text: soil metagenome

characteristic: organism

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Polygons

characteristic: title


High Centered-47-Mineral

characteristic: ENA-CHECKLIST

text: Ecology Department

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: High Centered-47-Mineral

characteristic: Submitter Id

text: High Centered-47-Mineral

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Polygons


High Centered-53-Mineral

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

characteristic: INSDC last update

text: public

text: High Centered-53-Mineral

text: High Centered-53-Mineral

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: NGEE Arctic Polygons

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: NGEE Arctic Polygons


Flat Centered-204-Organic

characteristic: ENA-CHECKLIST

text: Ecology Department

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Flat Centered-204-Organic

characteristic: Submitter Id

characteristic: collection date

text: Flat Centered-204-Organic

characteristic: description

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

text: metagenome

text: soil metagenome

characteristic: organism

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Polygons

characteristic: title


Low Centered-411-Mineral

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ecology Department

characteristic: INSDC last update

text: public

text: Low Centered-411-Mineral

text: Low Centered-411-Mineral

text: Arctic tundra

characteristic: environment (biome)

text: Polygonal ground

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

text: NGEE Arctic Polygons

text: soil metagenome

text: Illumina

text: soil

text: NGEE Arctic Polygons


Low Centered-415-Organic

characteristic: ENA-CHECKLIST

text: Ecology Department

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Low Centered-415-Organic

text: Low Centered-415-Organic

text: Arctic tundra

text: Polygonal ground

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: NGEE Arctic Polygons

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: NGEE Arctic Polygons


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) de la Universitat de Valencia

characteristic: Submitter Id

text: Firmicutes bacterium

characteristic: organism

text: Firmicutes bacterium

characteristic: strain

text: Firmicutes bacterium, strain HV4-6-A5C

characteristic: title


characteristic: ENA-CHECKLIST

text: Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) de la Universitat de Valencia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ruminococcaceae bacterium strain HV4-5-B5C assembly

characteristic: description

text: Ruminococcaceae bacterium HV4-5-B5C

text: Ruminococcaceae bacterium HV4-5-B5C


text: Medicum

text: public

characteristic: INSDC status

text: Bacteriophages were isolated from pig stool samples collected from different Finnish pig farms. The nucleic acid sequences of their genomes have been determined

text: Yersinia phage fPS-7

text: Yersinia phage fPS-7

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-9

text: Yersinia phage fPS-9

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-10

text: Yersinia phage fPS-10

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS16

text: Yersinia phage fPS16

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-19

text: Yersinia phage fPS-19

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-21

text: Yersinia phage fPS-21

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-26

text: Yersinia phage fPS-26

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-50

text: Yersinia phage fPS-50

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-52

text: Yersinia phage fPS-52

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-53

text: Yersinia phage fPS-53

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-54-ocr

text: Yersinia phage fPS-54-ocr

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-59

text: Yersinia phage fPS-59

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-64

text: Yersinia phage fPS-64

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-85

text: Yersinia phage fPS-85

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-86

text: Yersinia phage fPS-86

text: yersinia bacteriophages from pig stools


text: Medicum

text: public

text: Yersinia phage fPS-89

text: Yersinia phage fPS-89

text: yersinia bacteriophages from pig stools


characteristic: ENA first public

text: JIC

text: public

characteristic: collection date

text: We designed an RNA bait library to target sequences from many microbial species including Albugo candida, Albugo laibachii, Phytophthora infestans, Phytophthora capsici, Hyaloperonospora arabidopsidis, many fungi and bacteria as well as the nuclear internal transcribed spacer from several Brassicaceae species (use of 120 bp baits with no tiling, ordered from MYcroarray - custom MYbaits). In total, 115 samples were sequenced in three Illumina HiSeq 2500 lanes (using the rapid mode, 150 bp paired-end - PathSeq1 [enq_496] with 22 multiplexed samples, PathSeq2 [enq_889] with 46 samples and PathSeq 3 [enq_1238] with 47, library fragment size ~600 bp).

text: Europa Island

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Brassicaceae

characteristic: host scientific name

characteristic: isolate

text: plant leaf

text: plant metagenome

text: plant metagenome

text: Targeted sequencing of microbial sequences from environmental Brassicaceae leaf samples


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: Clostridium sp. strain HV4-5-A1G assembly

text: Clostridium sp. HV4-5-A1G

text: Clostridium sp. HV4-5-A1G

text: Clostridium sp. strain HV4-5-A1G


text: NTNU University Museum

text: public

characteristic: SRA accession

tag: Namespace:NTNU University Museum

characteristic: Submitter Id

text: marine

characteristic: environment (biome)

text: water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Baltic Sea

text: 59.83983° N

characteristic: geographic location (latitude)

text: 23.251° E

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: organism

text: fwd_seq: CYGCGGTAATTCCAGCTC, rev_seq: AGAGGTGRAATTCTHRGA

characteristic: pcr primers

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: Succession


characteristic: ENA-CHECKLIST

text: NTNU University Museum

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

text: marine

text: water

text: water

text: Yes

text: Baltic Sea

characteristic: geographic location (country and/or sea)

text: 59.8525° N

text: 23.25815° E

text: uncultured eukaryote

text: uncultured eukaryote

text: Succession

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU University Museum

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: marine

characteristic: environment (biome)

text: sea ice floe

text: first year ice

text: Yes

text: Baltic Sea

text: 59.83983° N

text: 23.251° E

text: uncultured eukaryote

text: uncultured eukaryote

text: Succession


text: NTNU University Museum

text: public

text: marine

text: sea ice floe

characteristic: environment (feature)

text: first year ice

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Baltic Sea

text: 59.8525° N

characteristic: geographic location (latitude)

text: 23.25815° E

characteristic: geographic location (longitude)

text: uncultured eukaryote

characteristic: organism

characteristic: pcr primers

text: uncultured eukaryote

text: Succession


CECT 9191

characteristic: ENA-CHECKLIST

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: CECT 9191

characteristic: collection date

text: redbanded seabream

text: internal organs of diseased fish

text: diseased redbanded seabream

text: Spain

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Photobacterium aquimaris

text: Whole genome sequencing of Photobacterium aquimaris CECT 9191

characteristic: project name

text: Photobacterium aquimaris

text: Illumina Miseq

characteristic: sequencing method

text: CECT 9191

characteristic: strain

text: Photobacterium aquimaris CECT 9191


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WTSI

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Pakistan

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serovar

text: Ceftriaxone resistant H58 S.Typhi

characteristic: title


characteristic: ENA-CHECKLIST

text: Eagle Genomics Ltd

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Eagle Genomics Ltd

text: CHO-K1 GS null

characteristic: cell type

text: Chinese hamster

characteristic: common name

text: The Horizon Discovery CHO-K1 GS null cell line. Generation of the cell line is described. Gene knockout (KO) of both alleles of the glutamine synthetase (GS) gene was performed on CHO-K1 cell line purchased from the European Collection of Cell Cultures (ECACC). Parental CHO-K1 stock was prepared by single cell dilution and selection of several clones based upon the similarity of growth characteristics compared to the parental CHO-K1 cells. A suitable clone was selected for targeting alongside identification of optimal conditions for antibiotic selection following transfection tests, rAAV transduction tests and antibiotic death curves. The rAAV targeting strategy followed that of Liu et al, 2010 [DOI:10.1002/bit.22654], achieving functional knock-out of CHO GS through the targeted deletion of exon six in the GS gene. After allele 1, the selection marker was removed using Cre recombinase, before allele 2 was targeted using the same strategy. The knockout was genotypically validated using genomic PCR and phenotypically validated using RT-PCR. After engineering the adherent CHO K1 cells, the GS null cells were then adapted to suspension culture in animal component free, chemically defined media. The CHOK1GS_HD cell line is available from Horizon Discovery under accessible terms with minimal licensing restrictions.

characteristic: description

text: Cricetulus griseus

characteristic: organism

text: Cricetulus griseus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIBE-IG

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: dog

text: Bullterrier - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Bullterrier


characteristic: ENA last update

text: Ausgem

text: public

characteristic: Submitter Id

characteristic: collection date

text: Ausgem porcine Escherichia coli genomes assembled with A5Miseq v. 20140618

text: Australia

characteristic: geographic location (country and/or sea)

text: Sus scrofa

characteristic: host scientific name

text: Pig rectal swab

text: Escherichia coli

text: Escherichia coli

text: Ausgem porcine Escherichia coli genomes


characteristic: ENA-CHECKLIST

text: Ausgem

characteristic: INSDC center name

text: public

text: Ausgem porcine Escherichia coli genomes assembled with A5Miseq v. 20150522

text: Australia

text: Sus scrofa

text: Pig rectal swab

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Ausgem porcine Escherichia coli genomes

characteristic: title


text: Elham Karimi

characteristic: INSDC first public

text: public

characteristic: INSDC status

tag: Namespace:Elham Karimi

text: Ocean

characteristic: environment (biome)

text: Coastal water body

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Portugal

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Spongia officinalis

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Rhodospirillaceae bacterium Spongia-Bin9

text: Genomic bins of sponge-associated and surrounding environment Alphaproteobacteria

characteristic: project name

text: Illumina

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Elham Karimi

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ocean

text: Coastal water body

text: Seawater

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: Rhodobacteraceae bacterium Water-Bin34

characteristic: organism

text: Rhodobacteraceae bacterium Water-Bin34

text: Rhodobacteraceae bacterium Water-Bin34

text: Illumina

text: Rhodobacteraceae bacterium Water-Bin34

text: water

characteristic: water environmental package