838 23F 2008

text: Hospital Universitari de Bellvitge

text: public

text: 838 23F 2008

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


6521 11A 2011

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Universitari de Bellvitge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6521 11A 2011

tag: Namespace:Hospital Universitari de Bellvitge

characteristic: Submitter Id

text: Spain

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3

characteristic: title


6521 11A 2013

text: Hospital Universitari de Bellvitge

text: public

text: 6521 11A 2013

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


6521 11A 2015

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Hospital Universitari de Bellvitge

text: public

text: 6521 11A 2015

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 1993

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 1993

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 1994

text: Hospital Universitari de Bellvitge

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 156 14 1994

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 1998

text: Hospital Universitari de Bellvitge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 156 14 1998

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 1999

text: Hospital Universitari de Bellvitge

text: public

characteristic: SRA accession

text: 156 14 1999

characteristic: Submitter Id

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2002

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2002

text: Spain

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2003

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2003

text: Spain

text: diseased

text: Homo sapiens

characteristic: isolate

text: Human

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2004

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2004

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3

characteristic: title


156 14 2006

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2006

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 19A 2009

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Hospital Universitari de Bellvitge

text: public

text: 156 19A 2009

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


143 14 2001

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Universitari de Bellvitge

text: public

text: 143 14 2001

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2002 2

text: Hospital Universitari de Bellvitge

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 156 14 2002 2

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2009

text: Hospital Universitari de Bellvitge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 156 14 2009

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2010

text: Hospital Universitari de Bellvitge

text: public

characteristic: SRA accession

text: 156 14 2010

characteristic: Submitter Id

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2011

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2011

text: Spain

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2012

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2012

text: Spain

text: diseased

text: Homo sapiens

characteristic: isolate

text: Human

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2013

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2013

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3

characteristic: title


156 14 2014

text: Hospital Universitari de Bellvitge

text: public

text: 156 14 2014

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156DLV 14 2008

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Hospital Universitari de Bellvitge

text: public

text: 156DLV 14 2008

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


2944 14 2007

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hospital Universitari de Bellvitge

text: public

text: 2944 14 2007

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


6519 14 2005

text: Hospital Universitari de Bellvitge

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 6519 14 2005

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156SLV 14 2007

text: Hospital Universitari de Bellvitge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 156SLV 14 2007

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


156 14 2001

text: Hospital Universitari de Bellvitge

text: public

characteristic: SRA accession

text: 156 14 2001

characteristic: Submitter Id

text: Spain

text: diseased

text: Homo sapiens

text: Human

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: S.pneumoniae PMEN3


text: MEMORIAL SLOAN KETTERING CANCER CENTER

text: public

tag: Namespace:MEMORIAL SLOAN KETTERING CANCER CENTER

text: uncultured bacterium

text: uncultured bacterium


text: PNRI

text: public

characteristic: description

text: Candida albicans

text: Candida albicans


text: public

tag: Namespace:Max Planck Institute for the Science of Human History

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Max Planck Institute for the Science of Human History

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Ria Cave_IndividualII


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Ria Cave_IndividualIII


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: TaputapuateaComplex


text: public

tag: Namespace:Oxford University Clinical Research Unit, Viet Nam

text: Cambodia

text: environment

characteristic: host scientific name

text: Klebsiella pneumoniae

characteristic: isolate

text: swab

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Oxford University Clinical Research Unit, Viet Nam

text: public

characteristic: collection date

text: Cambodia

text: not provided

characteristic: host health state

text: human

text: Klebsiella pneumoniae

text: swab

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Cambodia

characteristic: geographic location (country and/or sea)

text: environment

text: Klebsiella pneumoniae

text: swab

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


characteristic: External Id

text: Adelaide Bioinformatics Hub

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Adelaide Bioinformatics Hub

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Salmonella virus Chi

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella virus Chi

text: Salmonella virus Chi

text: Salmonella virus Chi

characteristic: subject id


text: Klebsiella pneumoniae subsp. pneumoniae B5055

text: SC

text: public

characteristic: common name


text: ANSES

text: public

characteristic: collection date

text: France

characteristic: isolate

text: Dairy products

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: ANSES

text: public

text: France

text: sea food

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Sweden

text: public

tag: Namespace:Public Health Sweden

text: The Swedish Food Agency

characteristic: collected by

text: Yes

characteristic: environmental sample

text: Sweden

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: environmental

characteristic: host scientific name

text: No

characteristic: is the sequenced pathogen host associated?

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria isolate


characteristic: External Id

text: Center for Genomic Medicin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Center for Genomic Medicin

characteristic: Submitter Id

text: human

characteristic: common name

text: preoperational

characteristic: dev stage

text: Denmark

text: Homo sapiens

text: Homo sapiens

text: GMchild


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6496:S-7708_AS-160861_170306_EE_504_3_1

tag: Namespace:(1) Department of Translational Oncology, National Center for Tumor Diseases (NCT) and German Cancer Research Center (DKFZ)  (2) Faculty of Biosciences, University of Heidelberg, Germany

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bone marrow cell

characteristic: cell type

text: house mouse

text: Protocols: Sorted murine primary BM cells from crushed hindlegs and spines (C57BL/6J, 8 weeks old, female) lineage depleted, StemCell Technologies) for Lin-,Sca-1+,c-Kit+ markers (40,000 cells). After 5 days, cells were sorted for GFP+ marker. Quiagen miRNeasy Micro Kit 1. cDNA: SMARTer Ultra Low Input RNA for Illumina Sequencing - HV (Clontech Laboratories, Inc.) 2. LibPrep: NEBNEXT ChIP-Seq Library Prep Master Mix Set for Illumina (Cat no. E6240) with modifications: a. Size exclusion omitted b. PCR with 10µl adapter-ligated ds cDNA and NEBNext High-Fidelity 2x PCR Master Mix (Cat no. M0541)

characteristic: description

text: control vector-GFP

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed hindlimb and spine

characteristic: organism part

text: wild type phenotype; Lin-,Sca-1+,c-Kit+

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: External Id

text: (1) Department of Translational Oncology, National Center for Tumor Diseases (NCT) and German Cancer Research Center (DKFZ) (2) Faculty of Biosciences, University of Heidelberg, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6496:S-7708_AS-160862_170306_EE_10a_3_1

characteristic: Submitter Id

text: ArrayExpress

text: bone marrow cell

text: house mouse

text: miR-10a overexpression

text: Mus musculus

text: Mus musculus

text: mixed hindlimb and spine

text: miR-10a overexpression; Lin-,Sca-1+,c-Kit+

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6496:S-7708_AS-160863_170306_EE_335_1_1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bone marrow cell

text: house mouse

characteristic: common name

text: miR-335 overexpression

text: Mus musculus

text: Mus musculus

text: mixed hindlimb and spine

text: miR-335 overexpression; Lin-,Sca-1+,c-Kit+

text: Mus musculus

text: female


text: public

text: E-MTAB-6496:S-7708_AS-160864_170306_EE_335_2_1

text: ArrayExpress

text: bone marrow cell

characteristic: cell type

text: house mouse

characteristic: description

text: miR-335 overexpression

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed hindlimb and spine

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: female


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6496:S-7708_AS-160865_170306_EE_335_3_1

text: ArrayExpress

text: bone marrow cell

text: house mouse

text: miR-335 overexpression

text: Mus musculus

text: Mus musculus

text: mixed hindlimb and spine

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6496:S-7882_AS-163837_170330_EE_504_1_1

characteristic: Submitter Id

text: ArrayExpress

text: bone marrow cell

text: house mouse

text: control vector-GFP

text: Mus musculus

text: Mus musculus

text: mixed hindlimb and spine

text: wild type phenotype; Lin-,Sca-1+,c-Kit+

text: Mus musculus

text: female


characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6496:S-7882_AS-163838_170330_EE_504_2_1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bone marrow cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: control vector-GFP

text: Mus musculus

text: Mus musculus

text: mixed hindlimb and spine

text: wild type phenotype; Lin-,Sca-1+,c-Kit+

text: Mus musculus

text: female


characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6496:S-7882_AS-163839_170330_EE_10a_1_1

text: ArrayExpress

text: bone marrow cell

text: house mouse

text: miR-10a overexpression

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed hindlimb and spine

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-6496:S-7882_AS-163840_170330_EE_10a_2_1

text: ArrayExpress

text: bone marrow cell

text: house mouse

text: miR-10a overexpression

text: Mus musculus

text: Mus musculus

text: mixed hindlimb and spine

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Lab for Stem Cell & Retinal Regeneration, Institute of Stem Cell Research, Division of Ophthalmic Genetics, The Eye Hospital, Wenzhou Medical University, State Key Laboratory for Visual Science

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: Protocols: At w0, we collected patient-, control-, patient-corrected-iPSC using TRIzol. And at w7, w13, w18, w22, we collected retinal organoids derived from patient-, control and corrected-iPSC. For all samples after week 0, 5 ipsc-derived retinal organoids were used. The procedure for inducing early stages of retinal organoid differentiation was based on a previously described protocol with some modifications (Kuwahara et al., 2015). Human iPSCs (patient-1, 2, control-1 and 2) were dissociated into single cells by TrypLE Select (Life Technologies) supplemented with 0.05 mg/ml DNase I (Roche) and 20 μM Y-27632 (Selleck). Single cells were reaggregated in low-cell-adhesion 96-well plates with V-bottomed conical wells (SumilonPrimeSurface plate; Sumitomo Bakelite) at a density of 12,000 cells per well in differentiation medium containing 10% KSR, 45% Iscove’s modified Dulbecco’s medium (IMDM, Gibco), 45% Hams F12 (F12, Gibco), Glutamax (Life Technologies), monothioglycerol (450 μM, Sigma), 100 U ml-1 penicillin and 100 μg ml-1 streptomycin (Gibco), supplemented with 20 μM Y-27632 (Sellock), under 5% CO2 at 37°C. The day on which suspension culture was initiated was defined as day 0. On day 6, recombinant human BMP4 (R&D) was added to the culture to a final concentration of 55 ng/ml, and its concentration was diluted in half every 3rd day via changing half of the medium. On day 18, the aggregates were transferred into petri dish and cut into 2 to 3 pieces using a V-Lance Knife (Alcon Surgical). They were suspended in neural retina medium [DMEM/F12-Glutamax medium (Life Technologies) supplemented with 1% N-2 supplement (Life Technologies), 0.5 μM retinal acid (Sigma), 0.1 mM taurine (Sigma), 10% FBS (Biological Industries), 100 U ml-1 penicillin and 100 μg ml-1 streptomycin (Life Technologies)] under 5% CO2 conditions for long term culture. The medium was changed every 7th day protecting from light exposure, especially after 120 days. Total RNA was extracted from retinal organoids using the RNeasy Mini Kit (Qiagen) and TRIzol reagent (Life Technologies) according to the manufacturer’s protocols. A total of 120 µg of RNA from the patient, control and corrected 3-D retinae from a series differentiation times (W0, 7, 13, 18 and 22) were sent for RNA sequencing. A total amount of 1 μg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext®UltraTM RNA Library Prep Kit for Illumina®(NEB, USA) following manufacturer’s recommendations and index codes were added to attribute sequences to each sample. Briefly, mRNA was purified from total RNA using poly-T oligo-attached magnetic beads. Fragmentation was carried out using divalent cations under elevated temperature in NEBNext First Strand Synthesis Reaction Buffer（5X）. First strand cDNA was synthesized using random hexamer primer and M-MuLV Reverse Transcriptase（RNase H-）. Second strand cDNA synthesis was subsequently performed using DNA Polymerase I and RNase H . Remaining overhangs were converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3’ ends of DNA fragments, NEBNext Adaptor with hairpin loop structure were ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 200-250 bp in length, the library fragments were purified with AMPure XP system (Beckman Coulter, Beverly, USA). Then 3 μl USER Enzyme (NEB, USA) was used with size-selected, adaptor-ligated cDNA at 37°C for 15 min followed by 5 min at 95°C before PCR. Then PCR was performed with Phusion High-Fidelity DNA polymerase, Universal PCR primers and Index (X) Primer. At last, PCR products were purified (AMPure XP system) and library quality was assessed on the Agilent Bioanalyzer 2100 system.

text: Retinitis pigmentosa

characteristic: disease

text: CRISPR/Cas9 mediated correction of RPGR exon 14 2bp frameshift mutation

text: adherent cell culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: urine

text: epithelial cell of nephron

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: time


characteristic: External Id

text: Lab for Stem Cell & Retinal Regeneration, Institute of Stem Cell Research, Division of Ophthalmic Genetics, The Eye Hospital, Wenzhou Medical University, State Key Laboratory for Visual Science

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: Retinitis pigmentosa

characteristic: genotype

text: organoid culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: urine

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: Retinitis pigmentosa

text: RPGR exon 14 2bp frameshift mutation

text: adherent cell culture

text: Homo sapiens

text: Homo sapiens

text: urine

text: epithelial cell of nephron

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: Retinitis pigmentosa

characteristic: disease

text: RPGR exon 14 2bp frameshift mutation

text: organoid culture

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: urine

text: Homo sapiens

text: male

characteristic: time


characteristic: INSDC center name

text: public

unit: month

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

characteristic: genotype

text: adherent cell culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: normal

text: wild type genotype

text: organoid culture

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


Prus

characteristic: External Id

text: CEBITEC

text: public

characteristic: SRA accession

text: Prus

characteristic: Submitter Id

characteristic: collection date

text: Draft genome sequence of Porites rus 14846/IV/SATS-LN/2007 based on binning

text: coral reef

characteristic: environment (biome)

text: aquarium

characteristic: environment (feature)

text: coral colony

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: isolate

text: Porites rus

text: Prus

characteristic: project name

text: Porites rus

text: Illumina MiSeq

characteristic: sequencing method

text: Host Genome Reconstruction in Complex Cnidarian Holobionts: An Enriched Sample and Binning May Outperform Traditional Approaches

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:ETH Zurich Institute of Molecular Biology and Biophysics

text: ArrayExpress

characteristic: broker name

text: Protocols: Mycobacterium smegmatis mc2-155 SMR5 wild-type cells were grown as shaking culture in Middlebrook 7H9 (supplemented with 0.2% v/v glycerol, 0.05% w/v Tween-80, and 0.2% w/v glucose) to an OD600 between 0.5 to 0.7 at 37 °C. The culture was split into 50 ml aliquots and cells were collected by centrifugation (2000 g, 10 min, 25 °C), resuspended in the same volume of fresh medium. DNA damage stress (100 ng/ml MMC) or oxidative stress (5 mM H2O2) was applied and cultures were incubated further at 37 °C with shaking. After 4 h, cultures were equilibrated to room temperature for 20 min before crosslinking by addition of formaldehyde (Thermo Scientific #28908; 1% w/v final concentration) for 20 min at room temperature with agitation. The crosslink reaction was quenched by addition of glycine to 250 mM and incubation for 5 min at room temperature. Crosslinked cells were collected by centrifugation (2000 g, 10 min, 4 °C) and washed twice in 40 ml to 50 ml cold PBS (4 °C). Samples were immediately processed with the nucleic acid extraction protocol. Reads were quality trimmed using Trimmomatic v0.35 (LEADING=3, SLIDINGWINDOW=4:15, MINLEN=30). Pellets were resuspended in 800 μl lysis buffer (20 mM HEPES-KOH pH 7.9/RT, 50 mM KCl, 0.1% v/v Triton X-100, 0.5 mM DTT, 1 mM EDTA, 1x c0mplete EDTA-free protease inhibitor cocktail (Roche), 1 mM PMSF), transferred to 2 ml screw cap tubes containing 500 mg to 700 mg 0.15 mm zirconium oxide beads (NextAdvance #ZrOB015). Cell lysis was performed by bead beating (3 x 30 s, 5 m/s, 5 min pause on ice in between, MP FastPrep-24). Beads and crude cell material were sedimented by mild centrifugation (2 x 100 g, 2 min, 4 °C, inverting tubes once in between) and the supernatant was transferred to new tubes. DNA was sheared using a Covaris E220 instrument (microTUBES AFA fibre, 130 μl; 10% duty cycle, 175 W PIP, 200 cbp, 400 s to 430 s duration) to a fragment length between 200 bp to 300 bp. Insoluble material was removed by centrifugation (11000 g, 10 min, 4 °C) and the supernatant was transferred to new tubes. 80 μl supernatant were set aside as “input” sample and supplemented with TrisHCl pH 8.8 (180 mM final) and EDTA (2.5 mM final). Buffer conditions in the cleared lysate used for immunoprecipitation were adjusted by addition of TrisCl pH 8/RT (10 mM final) and NaCl (150 mM final). Crosslinked PafBC-DNA complexes were captured by addition of 8 μg anti-PafBC antibody and incubation over night at 4 °C. Captured complexes were precipitated by addition of 40 μl Protein A Magnetic Beads (NEB #S1425S) previously washed in IPP150 buffer (10 mM TrisHCl pH 8/RT, 150 mM NaCl, 0.1% v/v Triton X-100) followed by incubation at room temperature for 2 h with agitation. Beads were washed five times in 900 μl IPP150 buffer and two times in 900 μl TE buffer (50 mM TrisHCl pH 8/RT, 10 mM EDTA). To elute bound complexes, beads were resuspended in 150 μl or 100 μl TE buffer containing 1% w/v SDS and incubated for 15 min at 65 °C. A second elution was performed with 100 μl or 50 μl for 5 min at 65 °C and the eluates of both steps were pooled (“enriched” sample). Enriched and input samples were treated with RNase A (0.2 mg/ml for 30 min at room temperature) and Proteinase K (0.4 mg/ml for 1 h at 55 °C) followed by reversal of the formaldehyde crosslinks at 65 °C over night. DNA fragments were purified from the input and enriched samples using the ChIP DNA Clean & Concentrator Kit (Zymo #D5201; elution in 16 μl 5 mM TrisHCl pH 8.5, 0.1 mM EDTA). DNA concentrations were determined using the Quant-iT PicoGreen dsDNA Assay Kit (ThermoScientific #P7589). Sequencing libraries were prepared with 100 ng DNA for input samples and 10 ng for enriched samples using the Ion Plus Fragment Library Kit (ThermoScientific #4471252) together with an Ion Xpress Barcode Adapters Kit (ThermoScientific) following the manufacturer’s protocol. Size-selection during library preparation was performed using AMPure XP beads (Agencourt) selecting fragments from 160 bp to 350 bp length.

characteristic: description

text: wild type genotype

characteristic: genotype

text: Middlebrook 7H9

characteristic: growth condition

text: Mycobacterium smegmatis str. MC2 155

characteristic: organism

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155


text: ETH Zurich Institute of Molecular Biology and Biophysics

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Middlebrook 7H9

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155


text: public

text: ArrayExpress

text: Protocols: Msm SMR5 wild-type and Msm SMR5 ΔpafBC cells were grown in triplicates in Middlebrook 7H9 medium as 50 ml shaking cultures to an OD600 between 0.4 to 0.7 at 37 °C. The cultures were incubated for another 1.5 h at 37 °C in presence or absence of 80 ng/ml MMC (Roche #000000010107409001) to induce DNA damage stress. The cultures were incubated for another 1.5 h at 37 °C. Cells were harvested by centrifugation (3200 g, 10 min, 25 °C) from 10 ml culture. Trimming (CLC Genomics Workbench Version 10.0.1; Trim Sequences v1.13) LX_illumina_adapters_for3p Sequence = AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT Strand = Minus Action = Remove adapter Scores = Mismatch: 2, Gapcost: 3, Cutoff: 10, Cutoff at end: 4 Trim adapter list = LX_illumina_adapters_for3p Ambiguous trim = No Quality trim = Yes Quality limit = 0.05 Use colorspace = No Create report = Yes Also search on reversed sequence = No Save discarded sequences = Yes Remove 5' terminal nucleotides = Yes Number of 5' terminal nucleotides = 9 Minimum number of nucleotides in reads = 15 Discard short reads = Yes Remove 3' terminal nucleotides = No Discard long reads = No Save broken pairs = No If not stated otherwise, the manufacturer's protocol applies. Total RNA was isolated using the SPLIT RNA Extraction Kit (Lexogen #008) after a modified protocol: Cells were resuspended in 600 μl ice-cold buffer IB, transferred on ice to 2 ml screw cap tubes containing 500 mg to 700 mg 0.15 mm zirconium oxide beads (NextAdvance #ZrOB015) and 3 μl Reagent DX (Qiagen #19088). Cell lysis was performed by bead beating for 30 s at 5000 rpm (Precellys Minilys). Insoluble material was removed by centrifugation at 19000 g, 10 min, 4 °C. 400 μl cleared lysate were used for the acidic phenol extraction step according to the kit’s protocol while replacing chloroform with 1-bromo-3-chloropropane. A second extraction step was performed using 1 ml 1-bromo-3-chloropropane to remove trace amounts of phenol. The extracted samples were further processed according to the kit’s protocol. Total RNA was then treated with the TURBO DNA-free Kit (Thermo Scientific #AM1907) to remove residual genomic DNA and afterwards purified using RNAClean XP beads (Agencourt). RNA concentrations were determined using Qubit RNA quantification assays (Thermo Scientific). Sample integrity was monitored with a TapeStation 2200 (Agilent) instrument. Presence of genomic DNA was assayed by PCR for amplification of a 245 bp fragment of the rpoB coding sequence (primers: rpoB-fw GTTCGCCTGGCGTGTACTT and rpoB-rt CAGCGTGCCCATCATGATCT). For storage, samples were kept at -80 °C. If not stated otherwise, the manufacturer's protocol applies. Ribosmal RNA was depleted with the Ribo-Zero Gram-Positive Bacteria Kit (illumina #MRZGP126) and the depleted RNA was purified using RNAClean XP beads. Sequencing libraries were prepared using the SENSE Total RNA-Seq Library Prep Kit (Lexogen #009) with 15 ng rRNA-depleted total RNA as input, an incubation time of 1.5 h for the reverse transcription step, the PE100 size selection parameters according to the manual, and 16 amplification cycles in the final PCR step. RNA concentrations were determined using Qubit RNA quantification assays (Thermo Scientific). Sample integrity was monitored with a TapeStation 2200 (Agilent) instrument. Presence of genomic DNA was assayed by PCR for amplification of a 245 bp fragment of the rpoB coding sequence (primers: rpoB-fw GTTCGCCTGGCGTGTACTT and rpoB-rt CAGCGTGCCCATCATGATCT). For storage, samples were kept at -80 °C.

text: wild type genotype

text: Middlebrook 7H9 medium

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

characteristic: title


text: public

text: ArrayExpress

text: delta pafBC

text: Middlebrook 7H9 medium

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155

text: Mycobacterium smegmatis str. MC2 155


text: Bacillus anthracis

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Bacillus anthracis

characteristic: common name

text: Bacillus anthracis

text: Bacillus anthracis

characteristic: subject id


text: Enterococcus faecium

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Enterococcus faecium

text: Enterococcus faecium

text: Enterococcus faecium


text: Sporosarcina newyorkensis

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sporosarcina newyorkensis

text: Sporosarcina newyorkensis

text: Sporosarcina newyorkensis


text: Bacteroides stercoris

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacteroides stercoris

text: Bacteroides stercoris

text: Bacteroides stercoris


text: Parabacteroides goldsteinii

text: SC

text: public

text: Parabacteroides goldsteinii

text: Parabacteroides goldsteinii

text: Parabacteroides goldsteinii


text: [Clostridium] innocuum

text: SC

text: public

text: [Clostridium] innocuum

text: [Clostridium] innocuum

text: [Clostridium] innocuum


text: Parabacteroides distasonis

text: SC

text: public

text: Parabacteroides distasonis

text: Parabacteroides distasonis

text: Parabacteroides distasonis


text: Bacteroides vulgatus

text: SC

text: public

text: Bacteroides vulgatus

text: Bacteroides vulgatus

text: Bacteroides vulgatus


text: Blautia coccoides

text: SC

text: public

text: Blautia coccoides

text: Blautia coccoides

text: Blautia coccoides


text: Bacteroides clarus

text: SC

text: public

text: Bacteroides clarus

text: Bacteroides clarus

text: Bacteroides clarus


text: Bacteroides thetaiotaomicron

text: SC

text: public

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron

text: Bacteroides thetaiotaomicron


text: Bacteroides cellulosilyticus

text: SC

text: public

text: Bacteroides cellulosilyticus

text: Bacteroides cellulosilyticus

text: Bacteroides cellulosilyticus


text: Bacteroides fragilis

text: SC

text: public

text: Bacteroides fragilis

text: Bacteroides fragilis

text: Bacteroides fragilis


text: [Clostridium] aldenense

text: SC

text: public

text: [Clostridium] aldenense

text: [Clostridium] aldenense

text: [Clostridium] aldenense


text: Bacteroides uniformis

text: SC

text: public

text: Bacteroides uniformis

text: Bacteroides uniformis

text: Bacteroides uniformis


text: Klebsiella oxytoca

text: SC

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Bacteroides dorei

text: SC

text: public

text: Bacteroides dorei

text: Bacteroides dorei

text: Bacteroides dorei


text: Parabacteroides johnsonii

text: SC

text: public

text: Parabacteroides johnsonii

text: Parabacteroides johnsonii

text: Parabacteroides johnsonii


text: Bacteroides xylanisolvens

text: SC

text: public

text: Bacteroides xylanisolvens

text: Bacteroides xylanisolvens

text: Bacteroides xylanisolvens


text: Sporosarcina newyorkensis

text: SC

text: public

text: Sporosarcina newyorkensis

text: Sporosarcina newyorkensis

text: Sporosarcina newyorkensis


text: Shigella sonnei

text: SC

text: public

text: Shigella sonnei

text: Shigella sonnei

text: Shigella sonnei


text: Enterococcus durans

text: SC

text: public

text: Enterococcus durans

text: Enterococcus durans

text: Enterococcus durans


text: Citrobacter freundii

text: SC

text: public

text: Citrobacter freundii

text: Citrobacter freundii

text: Citrobacter freundii


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: UCSDMI

text: public

text: Unspecified

text: false

characteristic: acne medication

text: false

text: Unspecified

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Occasionally (1-2 times/week)

text: Unspecified

text: No

text: false

text: false

text: false

text: true

text: false

text: false

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: true

text: Unspecified

characteristic: alzheimers

characteristic: anonymized name

text: Year

text: false

text: Unspecified

text: Unspecified

characteristic: asd

text: Yes

text: Unspecified

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: Unspecified

text: false

characteristic: cat

text: Unspecified

characteristic: cdiff

text: West

text: Unspecified

characteristic: chickenpox

text: Unspecified

characteristic: clinical condition

characteristic: collection date

text: May

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2013-05-07 16:35

text: Unspecified

text: No

characteristic: contraceptive

text: Daily

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Unspecified

text: false

text: I do not use deodorant or an antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: true

text: Unspecified

text: City

text: Unspecified

text: Rocky Mountain

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: Unspecified

text: Occasionally (1-2 times/week)

text: Depends on the season

text: Unspecified

text: Unspecified

text: Occasionally (1-2 times/week)

text: Year

text: Unspecified

text: Unspecified

text: Unspecified

text: USA:CO

text: No

text: centimeters

text: Unspecified

text: Unspecified

text: human

text: 87e16cddbb0a93efea155a71eb3b61e1a0a832658a6156bfab49b20e507e6a23d3d21f5e6d55dd916b8c657b1bce8b2ae4a0762145d12e31b1a88e00b6163b3e

text: I do not have this condition

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: No

text: Unspecified

text: 1 year

text: Unspecified

text: Unspecified

text: No

text: Unspecified

text: I do not have this condition

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Unspecified

text: Unspecified

text: No

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Unspecified

text: Unspecified

text: human gut metagenome

text: No

text: Unspecified

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Unspecified

text: No

text: Unspecified

text: Unspecified

text: Yes

text: Caucasian

text: Unspecified

text: Unspecified

text: One

text: Unspecified

text: Unspecified

text: Stool

text: human gut metagenome

text: Unspecified

text: Unspecified

text: female

text: Unspecified

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: CO

text: True

text: False

text: True

text: True

text: False

text: True

text: Unspecified

text: Unspecified

text: Daily

text: Unspecified

text: American Gut Project

text: No

text: 6 to 10

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Remained stable

text: kilograms

text: Unspecified

text: Unspecified


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: age cat

characteristic: age years

text: false

characteristic: alcohol consumption

text: Never

text: Unspecified

text: No

text: false

text: false

text: false

text: true

text: false

text: false

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: I have not taken antibiotics in the past year.

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Two

text: I tend to have normal formed stool - Type 3 and 4

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: false

text: I do not have this condition

text: Northeast

text: No

text: I do not have this condition

text: May

text: Spring

text: 2017-05-12 06:00

text: No

text: No

text: Never

text: USA

text: United States

text: United States

text: true

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: false

text: I am right handed

text: Filtered

text: I don't drink

text: Mideast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: Primarily breast milk

text: Never

text: Rarely (a few times/month)

text: I have not gotten the flu vaccine in the past year.

text: Never

text: Regularly (3-5 times/week)

text: I do not have this condition

text: USA:NY

text: I do not eat gluten because it makes me feel bad

text: centimeters

text: Occasionally (1-2 times/week)

text: Daily

text: human

text: f5c22886ba9921be04938b06509a4e2352370c35964ea4eebe7a7c1398f3d6cd38379e52b7f4235a8affd801b8a47da5d1fec75b51aa948c85f65e89d9d71c54

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: I have lived in my current state of residence for more than a year.

text: I have not been outside of my country of residence in the past year.

text: Bachelor's degree

text: I do not have this condition

text: Yes

text: Unspecified

text: Daily

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Rarely (less than once/week)

text: No

text: Never

text: Rarely (a few times/month)

text: Yes

text: Caucasian

text: Never

text: Regularly (3-5 times/week)

text: Yes

text: Never

text: Stool

text: human gut metagenome

text: Regularly (3-5 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: Yes

text: Yes

text: No

text: No

text: No

text: No

text: NY

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: Yes

text: More than 30

text: Daily

text: Daily

text: Daily

text: Rarely (a few times/month)

text: Increased more than 10 pounds

text: kilograms

text: Daily

text: Never


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Unspecified

text: false

text: false

text: I do not have this condition

text: false

text: Never

text: Unspecified

text: No

text: false

text: false

text: false

text: true

text: false

text: false

text: Unspecified

text: false

text: false

text: false

text: false

text: true

text: I do not have this condition

text: true

text: Unspecified

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: false

text: Unspecified

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: true

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: West

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: June

characteristic: collection month

text: Summer

characteristic: collection season

characteristic: collection time

text: 2013-06-05 16:35

text: Not sure

text: No

characteristic: contraceptive

text: Occasionally (1-2 times/week)

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Unspecified

text: false

text: I use an antiperspirant

text: I do not have this condition

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: false

text: I am right handed

text: Well

text: Unspecified

text: Far West

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Outdoors

text: Primarily breast milk

text: Never

text: Daily

text: Year

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: USA:CA

text: centimeters

text: Rarely (less than once/week)

text: Daily

text: human

text: 932223e0e58603720a31e5074b49b6984438e9967a49116c560e694ca07221ea129f6b33617901aa24404f5b39e9ddbbfd28c060bf716ecfa5c0c169abf19fa2

text: I do not have this condition

text: Unspecified

text: Unspecified

text: Unspecified

text: I do not have this condition

text: No

text: Graduate or Professional degree

text: I do not have this condition

text: Yes

text: No

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Daily

text: Never

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: Yes

text: No

text: No

text: Daily

text: Regularly (3-5 times/week)

text: human gut metagenome

text: Yes

text: Unspecified

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Rarely (less than once/week)

text: Rarely (a few times/month)

text: Yes

text: Caucasian

text: Never

text: Rarely (less than once/week)

text: No

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: CA

text: False

text: True

text: True

text: True

text: False

text: True

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 21 to 30

text: Daily

text: Never

text: Daily

text: Unspecified

text: Remained stable

text: kilograms

text: Regularly (3-5 times/week)

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: false

characteristic: alcohol consumption

text: Never

text: Unspecified

text: No

text: false

text: false

text: false

text: true

text: false

text: true

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: 6 months

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: I tend to have diarrhea (watery stool) - Type 5, 6 and 7

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: false

text: I do not have this condition

text: Unspecified

text: No

text: I do not have this condition

text: October

text: Fall

text: 2017-10-29 10:15

text: Not sure

text: No

text: Never

text: Australia

text: Australia

text: Australia

text: false

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: false

text: I am right handed

text: Bottled

text: Unspecified

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Outdoors

text: Primarily breast milk

text: Never

text: Rarely (a few times/month)

text: Month

text: Never

text: Daily

text: I do not have this condition

text: Australia:Unspecified

text: No

text: centimeters

text: Never

text: Daily

text: human

text: cbbf8c110f963b53e4935f26877aa7c6f6ebaf4c2d28fb47c41149811e9f70d7ff478cd09f5bf6bc18a19cf0192f10b95ea46c064fe14b73f4c2144ccff4f4d6

text: Ulcerative colitis

text: Ulcerative colitis

text: I do not have this condition

text: I do not have this condition

text: No

text: Unspecified

text: Bachelor's degree

text: I do not have this condition

text: No

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Never

text: Never

text: Yes

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Never

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Never

text: Never

text: No

text: Daily

text: Stool

text: human gut metagenome

text: Regularly (3-5 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: Yes

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: False

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Daily

text: Never

text: Daily

text: Never

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Never


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: false

text: Never

text: Unspecified

text: No

text: false

text: false

text: false

text: true

text: false

text: true

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

text: 6 months

text: false

text: Never

text: I do not have this condition

text: Yes

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: One

text: false

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Unspecified

text: No

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: October

characteristic: collection month

text: Fall

characteristic: collection season

characteristic: collection time

text: 2017-10-31 10:15

text: Not sure

text: No

characteristic: contraceptive

text: Never

text: Australia

characteristic: country

text: Australia

characteristic: country of birth

text: Australia

text: false

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: false

text: I am right handed

text: Bottled

text: Unspecified

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Outdoors

text: Primarily breast milk

text: Never

text: Rarely (a few times/month)

text: Month

text: Never

text: Daily

text: I do not have this condition

text: Australia:Unspecified

text: No

text: centimeters

text: Never

text: Daily

text: human

text: Ulcerative colitis

text: Ulcerative colitis

text: I do not have this condition

text: I do not have this condition

text: No

text: Unspecified

text: Bachelor's degree

text: I do not have this condition

text: No

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Never

text: Never

text: Yes

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Never

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Never

text: Never

text: No

text: Daily

text: Stool

text: human gut metagenome

text: Regularly (3-5 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: Yes

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: False

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Daily

text: Never

text: Daily

text: Never

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Never


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: false

characteristic: alcohol consumption

text: Never

text: Unspecified

text: No

text: false

text: false

text: false

text: true

text: false

text: true

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: 6 months

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: false

text: I do not have this condition

text: Unspecified

text: No

text: I do not have this condition

text: October

text: Fall

text: 2017-10-29 10:10

text: Not sure

text: No

text: Never

text: Australia

text: Australia

text: Australia

text: false

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: false

text: I am right handed

text: Bottled

text: Unspecified

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Outdoors

text: Primarily breast milk

text: Never

text: Rarely (a few times/month)

text: Month

text: Never

text: Daily

text: I do not have this condition

text: Australia:Unspecified

text: No

text: centimeters

text: Never

text: Daily

text: human

text: Ulcerative colitis

text: Ulcerative colitis

text: I do not have this condition

text: I do not have this condition

text: No

text: Unspecified

text: Bachelor's degree

text: I do not have this condition

text: No

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Never

text: Never

text: Yes

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Never

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Never

text: Never

text: No

text: Daily

text: Stool

text: human gut metagenome

text: Regularly (3-5 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: Yes

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: False

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Daily

text: Never

text: Daily

text: Never

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Never


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: false

text: true

text: I do not have this condition

text: true

text: Daily

text: Unspecified

text: No

text: false

text: false

text: true

text: false

text: false

text: false

text: Unspecified

text: true

text: false

text: false

text: false

text: false

text: I do not have this condition

text: 6 months

text: true

text: Never

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Overweight

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Unspecified

text: false

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Unspecified

text: Not sure

characteristic: chickenpox

characteristic: clinical condition

characteristic: collection date

text: March

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2017-03-31 09:30

text: Yes

text: No

characteristic: contraceptive

text: Never

text: Australia

characteristic: country

text: Australia

characteristic: country of birth

text: Australia

text: false

text: I use an antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: true

text: I am left handed

text: City

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: A mixture of breast milk and formula

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Australia:Unspecified

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Daily

text: human

text: b1cdd3006e67d35857031cbb306b97a2ec5d4ed9eda62f89099827fa6dc1d12ed4c30f8dcb33bb4ccdbf9d5b44f73a3a2af0fd8c477fcf53c606da8b9ef6cf6d

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Unspecified

text: Some graduate school or professional

text: I do not have this condition

text: Yes

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Yes

text: Unspecified

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: I do not have this condition

text: Daily

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text: No

text: No

text: Unspecified

text: No

text: Yes

text: No

text: No

text: No

text: No

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: No

text: Yes

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: 6-7 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 6 to 10

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Rarely (a few times/month)

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Rarely (less than once/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Daily

text: Unspecified

text: Yes

text: true

text: false

text: false

text: false

text: true

text: true

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: Year

text: true

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: false

text: I do not have this condition

text: Unspecified

text: Yes

text: I do not have this condition

text: March

text: Spring

text: 2017-03-31 10:00

text: Yes

text: No

text: Unspecified

text: Australia

text: Australia

text: Australia

text: false

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: true

text: true

text: I am left handed

text: City

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: A mixture of breast milk and formula

text: Never

text: Occasionally (1-2 times/week)

text: Year

text: Never

text: Regularly (3-5 times/week)

text: Australia:Unspecified

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Daily

text: human

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text: I do not have this condition

text: Crohn's disease

text: Ileal Crohn's Disease

text: I do not have this condition

text: No

text: Month

text: Unspecified

text: Graduate or Professional degree

text: I do not have this condition

text: Yes

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Daily

text: Never

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Daily

text: human gut metagenome

text: No

text: Yes

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: Unspecified

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: Yes

text: 6 to 10

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Rarely (less than once/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Rarely (a few times/month)

text: Unspecified

text: Yes

text: false

text: false

text: false

text: false

text: true

text: true

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

text: false

text: Never

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: false

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Unspecified

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: April

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2017-04-25 12:00

text: No

text: No

characteristic: contraceptive

text: Never

text: Australia

characteristic: country

text: Australia

characteristic: country of birth

text: Australia

text: false

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegan

text: true

text: true

text: I am left handed

text: Filtered

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Indoors

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Never

text: Daily

text: I do not have this condition

text: Australia:Unspecified

text: No

text: centimeters

text: Never

text: Daily

text: human

text: a2b401da2639e900b1aa8df17160eec3846842575c05f0c2963bc72c7b35deca9053ff89da6991aa72903b531d3bbbb346638d8f02cc3b2f0df137e850173ee3

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Within the past 6 months

text: Unspecified

text: Bachelor's degree

text: I do not have this condition

text: Yes

text: Unspecified

text: Unspecified

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Never

text: Daily

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Occasionally (1-2 times/week)

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: Rarely (less than once/week)

text: Never

text: Yes

text: Caucasian

text: Never

text: Never

text: No

text: Never

text: Stool

text: human gut metagenome

text: Never

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Never

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: More than 30

text: Daily

text: Daily

text: Daily

text: Never

text: Remained stable

text: kilograms

text: Never

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Occasionally (1-2 times/week)

text: Unspecified

text: No

text: false

text: false

text: false

text: false

text: true

text: true

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Underweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Unspecified

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: true

text: I do not have this condition

text: Unspecified

text: Yes

text: I do not have this condition

text: April

text: Spring

text: 2017-04-25 11:30

text: No

text: No

text: Daily

text: Australia

text: Australia

text: Australia

text: false

text: I use an antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegetarian

text: true

text: false

text: I am right handed

text: City

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Indoors

text: Primarily breast milk

text: Never

text: Never

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: Australia:Unspecified

text: No

text: centimeters

text: Never

text: Daily

text: human

text: 9a91cd879740f45d3d7a27937169c626cf08e6b378d83d9abf6a3a6ae25c3db5e12621f3230861784f942fa672cc87eb052c406c2dfa4b6490958aaa0d3c0e9a

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Unspecified

text: No

text: Unspecified

text: Bachelor's degree

text: I do not have this condition

text: No

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Unspecified

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Occasionally (1-2 times/week)

text: Daily

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Rarely (less than once/week)

text: No

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Yes

text: Caucasian

text: Rarely (less than once/week)

text: Never

text: One

text: Yes

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Never

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: True

text: False

text: True

text: False

text: True

text: Never

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: More than 30

text: Regularly (3-5 times/week)

text: Never

text: Never

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Rarely (a few times/month)

text: Unspecified

text: No

text: true

text: false

text: true

text: false

text: false

text: true

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

text: 6 months

text: false

text: Never

text: I do not have this condition

text: Yes

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Five or more

text: false

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: false

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Unspecified

text: No

characteristic: chickenpox

characteristic: clinical condition

characteristic: collection date

text: April

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 2017-04-25 13:00

text: No

text: No

characteristic: contraceptive

text: Unspecified

text: Australia

characteristic: country

text: Australia

characteristic: country of birth

text: Australia

text: false

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegan

text: true

text: true

text: I am left handed

text: Filtered

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Both

text: Primarily infant formula

text: Rarely (less than once/week)

text: Daily

text: Rarely (less than once/week)

text: Daily

text: Australia:Unspecified

text: No

text: centimeters

text: Never

text: Daily

text: human

text: 2e5bd6c80d096f7d5a7e2d0abf4c21313df2c5e045b3669af29d7212804463817296c394dd1ab296bec4481ef4f0437171c4fedbb84387a5fb1cdde40765858f

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: No

text: Within the past 6 months

text: Unspecified

text: Bachelor's degree

text: I do not have this condition

text: Yes

text: Unspecified

text: Unspecified

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Never

text: Daily

text: No

text: No

text: Unspecified

text: No

text: No

text: Yes

text: No

text: No

text: No

text: Never

text: Daily

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: Occasionally (1-2 times/week)

text: Never

text: Yes

text: Caucasian

text: Never

text: Never

text: Yes

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Never

text: Yes

text: female

text: I do not have this condition

text: 8 or more hours

text: Never

text: No

text: Unspecified

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: More than 30

text: Daily

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Remained stable

text: kilograms

text: Never

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Rarely (a few times/month)

text: Unspecified

text: No

text: true

text: false

text: false

text: false

text: false

text: false

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: true

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: Year

text: false

text: Never

text: Self-diagnosed

characteristic: asd

text: Yes

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Three

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: true

text: I do not have this condition

text: Unspecified

text: Yes

text: Unspecified

text: April

text: Spring

text: 2017-04-25 14:45

text: No

text: Yes, I am taking the pill

text: Unspecified

text: Australia

text: Australia

text: Australia

text: false

text: I do not use deodorant or an antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegan

text: true

text: false

text: I am right handed

text: City

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Depends on the season

text: Primarily infant formula

text: Occasionally (1-2 times/week)

text: Never

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: Australia:Unspecified

text: I was diagnosed with gluten allergy (anti-gluten IgG), but not celiac disease

text: centimeters

text: Never

text: Daily

text: human

text: dc8e97902ffbca8a6748a6356c77d72f27b9c7920e2198b909d83f4c282d45b2ce4f29663b0ad4aafdc321a8ec565f7c1c08a22e15c844b1105373adca0c5d72

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Yes

text: Unspecified

text: Some college or technical school

text: I do not have this condition

text: No

text: Unspecified

text: Unspecified

text: Rarely (less than once/week)

text: Yes

text: Unspecified

text: No

text: No

text: Yes

text: Yes

text: No

text: No

text: Yes

text: No

text: Never

text: Daily

text: No

text: Yes

text: Unspecified

text: No

text: Yes

text: No

text: No

text: No

text: No

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Yes

text: Caucasian

text: Never

text: Never

text: One

text: Yes

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Never

text: Yes

text: female

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: Yes

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: More than 30

text: Daily

text: Never

text: Never

text: Rarely (a few times/month)

text: Decreased more than 10 pounds

text: kilograms

text: Rarely (less than once/week)

text: Rarely (less than once/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: false

text: false

text: I do not have this condition

text: true

text: Rarely (a few times/month)

text: Unspecified

text: Yes

text: true

text: false

text: false

text: false

text: true

text: true

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

text: I have not taken antibiotics in the past year.

text: false

text: Never

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Three

text: I tend to have normal formed stool - Type 3 and 4

text: false

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: true

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: South

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: December

characteristic: collection month

text: Winter

characteristic: collection season

characteristic: collection time

text: 2017-12-12 09:15

text: Unspecified

text: Yes, I am taking the pill

characteristic: contraceptive

text: Daily

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: United States

text: true

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegetarian

text: true

text: false

text: I am right handed

text: Filtered

text: Southeast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Daily

text: Daily

text: Regularly (3-5 times/week)

text: I do not have this condition

text: USA:VA

text: centimeters

text: Never

text: Daily

text: human

text: 8501e09831c2814a0d5cce9e76aeadd7e6b69e73f22b912f367974bcf9566075237cb84475cef3cd38ad0f0ba14f1059957b48b8ffb9ae3c72653f280d39efe5

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Bachelor's degree

text: I do not have this condition

text: Yes

text: Unspecified

text: I do not have this condition

text: Rarely (less than once/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: Yes

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: Occasionally (1-2 times/week)

text: Daily

text: Yes

text: Caucasian

text: Occasionally (1-2 times/week)

text: Never

text: Yes

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Never

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: VA

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 21 to 30

text: Daily

text: Occasionally (1-2 times/week)

text: Never

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: false

characteristic: acne medication

text: false

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: true

characteristic: alcohol consumption

text: Occasionally (1-2 times/week)

text: Unspecified

text: Yes

text: true

text: false

text: false

text: false

text: true

text: true

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: false

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Two

text: false

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: true

text: I do not have this condition

text: South

text: Yes

text: I do not have this condition

text: December

text: Winter

text: 2017-12-12 09:05

text: No

text: No

text: Never

text: USA

text: United States

text: United States

text: false

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegetarian

text: true

text: false

text: I am right handed

text: City

text: Southeast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Both

text: A mixture of breast milk and formula

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: I have not gotten the flu vaccine in the past year.

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: USA:VA

text: No

text: centimeters

text: Never

text: Regularly (3-5 times/week)

text: human

text: 0d66bac4a9e733910701e87dc442c2d0642e456a1b5b0b70a09caf14f9931018842b8f27bc4ac6c7048193356d644bfaef22d142ef49f5e985d5e041fb830502

text: I do not have this condition

text: Unspecified

text: Unspecified

text: Diagnosed by a medical professional (doctor, physician assistant)

text: I do not have this condition

text: No

text: Graduate or Professional degree

text: I do not have this condition

text: Yes

text: Unspecified

text: I do not have this condition

text: Rarely (less than once/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Daily

text: Regularly (3-5 times/week)

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Yes

text: Caucasian

text: Occasionally (1-2 times/week)

text: Never

text: Yes

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Never

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 8 or more hours

text: Never

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: VA

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: More than 30

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Daily