E-MTAB-6379:Sample 87

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 87

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

characteristic: developmental stage

text: influenza

characteristic: disease

characteristic: individual

text: H7N9 subtype

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: CD3+ CD38+HLA-DR+ CD8+

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 87


E-MTAB-6379:Sample 88

status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6379:Sample 88

tag: Namespace:UNSW Sydney

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-Positive T-Lymphocytes

characteristic: cell type

text: fatal group

characteristic: clinical history

text: human

characteristic: common name

text: Protocols: Patients were selected based on: 1) comparable time-points; but differential disease outcomes: one patients was from the fatal outcome group, one patient from survival group. Peripheral Blood Mononuclear Cells were separated from Whole blood using density gradient centrifugation and used directly for staining and sorting. Cells were stained with antibodies: anti-CD3-PB (BD Cat #558117, UCTH1, 1:200), anti-CD8-FITC (BD Cat #347313, SK1, 1:50), anti-CD27-PE-Cy7 (eBioscience Cat #25-0279-42, O323, 1:25), anti-CD45RA-APC-Cy7 (BD Cat #560674, HI100, 1:50), anti-HLA-DR-ECD (Beckman Coulter Cat#IM3636, Immu-357, 1:25), anti-CD38-PerCPCy5.5 (Biolegend, Cat#303522, 1:50), anti-PD-1-APC (Biolegend #329908, EH12.2H7, 1:25) and Live/Dead-aqua 525 (Invitrogen, 1:800). Lymphocytes were washed, acquired on an Aria II sorter and single cell sorted into 96 well plates which already contains 2ul of lysis buffer. a33 has two time-points after disease onset: d12 and d31; a11 has two time-points after disease onset: d15 and d29. PBMC samples were taken out from liquid nitrogen and placed on dry ice, thawed in a 37 degree waterbath and transferred into 9ml cRPMI, and then washed at 500g, 7min, then resuspended in 50ul of Live/Dead-aqua 525 (Invitrogen, 1:800) in PBS, and then incubated for 15min at dark, washed and resuspended with 50ul of antibodies mixture : anti-CD3-PB (BD Cat #558117, UCTH1, 1:200), anti-CD8-FITC (BD Cat #347313, SK1, 1:50), anti-CD27-PE-Cy7 (eBioscience Cat #25-0279-42, O323, 1:25), anti-CD45RA-APC-Cy7 (BD Cat #560674, HI100, 1:50), anti-HLA-DR-ECD (Beckman Coulter Cat#IM3636, Immu-357, 1:25), anti-CD38-PerCPCy5.5 (Biolegend, Cat#303522, 1:50), anti-PD-1-APC (Biolegend #329908, EH12.2H7, 1:25) for 30min, wash with MACS buffer for twice and then single sorted on Aria II . Single cell RNA sequencing was performed using Smart-seq2 as described by Picelli et al. (Picelli et al. Nature methods 2013) with the following modifications. Cell lysis buffer was prepared by adding 1 μlRNase inhibitor (Clontech, Mountain View, CA) to 19 μlTriton X-100 solution (0.2% v/v). Cells were sorted directly into tube containing 2 μl lysis buffer, 1 μl dNTP mix (10mM) and 1 μl oligo-dT primer at 5 μM. Tubes were stored at -80 °C until needed. Reverse-transcription and PCR amplification were performed as described with the exception of reducing the IS PCR primer to a 50 nM final concentration and increasing the number of cycles to 28. Sequencing libraries were prepared using the Nextera XT Library Preparation Kit (Illumina; San Diego, CA, USA) and sequencing was performed on Illumina NextSeq sequencing platform. ERCC RNA Spike-In Mix 1 was utilised, from ThermoFisher, cat 4456740 (1:400,000,000 dilution)

characteristic: description

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 88

characteristic: title


E-MTAB-6379:Sample 89

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 89

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

characteristic: developmental stage

text: influenza

characteristic: disease

characteristic: individual

text: H7N9 subtype

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: CD3+ CD38+HLA-DR+ CD8+

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 89


E-MTAB-6379:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6379:Sample 9

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: survival group

text: human

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-6379:Sample 90

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 90

text: ArrayExpress

characteristic: broker name

text: CD8-Positive T-Lymphocytes

characteristic: cell type

text: fatal group

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 90

characteristic: title


E-MTAB-6379:Sample 91

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 91

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

characteristic: developmental stage

text: influenza

characteristic: disease

characteristic: individual

text: H7N9 subtype

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: CD3+ CD38+HLA-DR+ CD8+

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 91


E-MTAB-6379:Sample 92

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6379:Sample 92

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 92


E-MTAB-6379:Sample 93

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 93

text: ArrayExpress

characteristic: broker name

text: CD8-Positive T-Lymphocytes

characteristic: cell type

text: fatal group

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 93

characteristic: title


E-MTAB-6379:Sample 94

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 94

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

characteristic: developmental stage

text: influenza

characteristic: disease

characteristic: individual

text: H7N9 subtype

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: CD3+ CD38+HLA-DR+ CD8+

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 94


E-MTAB-6379:Sample 95

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6379:Sample 95

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 95


E-MTAB-6379:Sample 96

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 96

text: ArrayExpress

characteristic: broker name

text: CD8-Positive T-Lymphocytes

characteristic: cell type

text: fatal group

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 96

characteristic: title


E-MTAB-6379:Sample 97

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 97

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

characteristic: developmental stage

text: influenza

characteristic: disease

characteristic: individual

text: H7N9 subtype

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: CD3+ CD38+HLA-DR+ CD8+

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 97


E-MTAB-6379:Sample 98

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNSW Sydney

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6379:Sample 98

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: CD8-Positive T-Lymphocytes

text: fatal group

text: human

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 98


E-MTAB-6379:Sample 99

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW Sydney

text: public

text: E-MTAB-6379:Sample 99

text: ArrayExpress

characteristic: broker name

text: CD8-Positive T-Lymphocytes

characteristic: cell type

text: fatal group

characteristic: clinical history

text: human

characteristic: common name

characteristic: description

text: adult

text: influenza

text: H7N9 subtype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: CD3+ CD38+HLA-DR+ CD8+

text: Homo sapiens

text: male

text: Sample 99

characteristic: title


High five1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL

text: public

text: High five1

text: cabbage looper

text: Trichoplusia ni

text: Trichoplusia ni

text: High five


High five2

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: High five2

text: cabbage looper

text: Trichoplusia ni

text: Trichoplusia ni

text: High five


High five3

text: EMBL

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: High five3

text: cabbage looper

text: Trichoplusia ni

text: Trichoplusia ni

text: High five


High five4

text: EMBL

text: public

characteristic: SRA accession

text: High five4

characteristic: Submitter Id

text: cabbage looper

text: Trichoplusia ni

text: Trichoplusia ni

text: High five


text: Human adenovirus 21

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Human adenovirus 21

text: Human adenovirus 21

text: Human adenovirus 21

characteristic: subject id


text: Human adenovirus 17

characteristic: External Id

text: SC

text: public

text: Human adenovirus 17

text: Human adenovirus 17

text: Human adenovirus 17


text: Human adenovirus 31

text: SC

text: public

text: Human adenovirus 31

text: Human adenovirus 31

text: Human adenovirus 31


text: Human adenovirus 14

text: SC

text: public

text: Human adenovirus 14

text: Human adenovirus 14

text: Human adenovirus 14


text: Human adenovirus 27

text: SC

text: public

text: Human adenovirus 27

text: Human adenovirus 27

text: Human adenovirus 27


text: Human adenovirus 28

text: SC

text: public

text: Human adenovirus 28

text: Human adenovirus 28

text: Human adenovirus 28


text: Human adenovirus 29

text: SC

text: public

text: Human adenovirus 29

text: Human adenovirus 29

text: Human adenovirus 29


text: Human adenovirus 30

text: SC

text: public

text: Human adenovirus 30

text: Human adenovirus 30

text: Human adenovirus 30


text: Human adenovirus 32

text: SC

text: public

text: Human adenovirus 32

text: Human adenovirus 32

text: Human adenovirus 32


text: Human adenovirus 24

text: SC

text: public

text: Human adenovirus 24

text: Human adenovirus 24

text: Human adenovirus 24


text: Human adenovirus 25

text: SC

text: public

text: Human adenovirus 25

text: Human adenovirus 25

text: Human adenovirus 25


text: Human adenovirus 26

text: SC

text: public

text: Human adenovirus 26

text: Human adenovirus 26

text: Human adenovirus 26


text: Human adenovirus 20

text: SC

text: public

text: Human adenovirus 20

text: Human adenovirus 20

text: Human adenovirus 20


text: public

tag: Namespace:DEPARTMENT OF CHEMISTRY, BIOTECHNOLOGY AND FOOD SCIENCE (IKBM), NORWEGIAN UNIVERSITY OF LIFE SCIENCES (NMBU), NORWAY

text: uncultured bacterium

text: uncultured bacterium


text: DEPARTMENT OF CHEMISTRY, BIOTECHNOLOGY AND FOOD SCIENCE (IKBM), NORWEGIAN UNIVERSITY OF LIFE SCIENCES (NMBU), NORWAY

text: public

text: uncultured bacterium

text: uncultured bacterium


text: public

tag: Namespace:College of Life Science, Jilin University

text: human

text: an ancient Rouran individual

text: Homo sapiens

text: Homo sapiens

text: the genome of an ancient Rouran individual


High Five nanopore

text: EMBL

text: public

text: High Five nanopore

text: cabbage looper

text: Trichoplusia ni

text: Trichoplusia ni

text: High Five nanopore


text: MPI-EVA

text: public

text: Neandertal

text: Nuclear DNA sequences from Denisova 11, a bone fragment from Denisova Cave, from an individual who had a Neandertal mother and a Denisovan father

text: Homo sapiens neanderthalensis

text: Homo sapiens neanderthalensis


text: UCL Cancer Institute

text: public

tag: Namespace:UCL Cancer Institute

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: pro-B cell

characteristic: cell type

text: human

text: Protocols: MIFF3 IPS (https://hpscreg.eu/cell-line/UOSi001-B) and H1 ES cells were cultured on matrigel-coated (Corning) 6 well plates in either mTeSR™1 (Stem Cell Technologies) or StemFit®AK (Ajinomoto Co., Inc, Tokyo, Japan). Cultures were passaged every 4-7 days using gentle dissociation reagent (SCT) according to manufacturer’s instructions in the presence of Y27632 rock inhibitor. For these studies we used a human induced PSC (hIPSC) line, MIFF3, and corroborated our findings using the H1 human embryonic stem cell (hESC) line. An OP9/MS5 sequential co-culture system was used to differentiate hPSCs to the B cell lineage 22-400 cells were directly sorted into 800μl Trizol® and frozen at -80oC. RNA was extracted in the aqueous phase after addition of 160ul chloroform, precipitated with an equal volume of isopropanol supplemented with 20μg linear polyacrylamide and washed once in fresh 80% ethanol. The RNA pellet was re-suspended in 3μl water at 50oC for 10 minutes and then kept on ice. 100pg (or 1μl of stock if unquantifiable) of RNA used for first strand synthesis using SMARTER v3 (Clontech) before 16 cycles of amplification according to manufacturer’s instructions. cDNA was purified on Agencourt ®AMPure®XP magnetic beads, washed twice with fresh 80% ethanol and eluted in 17μl elution buffer. 1μl cDNA was checked and quantified on an Agilent Bioanalyser high sensitivity DNA chip. Sequencing libraries were produced using Illumina® Nextera XT tagmentation according to manufacturer’s instructions except using 150pg input cDNA, 5mins tagmentation and amplification 12 cycles using Illumina® XT 24 index primer kit. Libraries were cleaned using an equal volume (50μl) Agencourt ®AMPure®XP magnetic beads and re-suspended in 20μl elution buffer. Libraries were checked and quantified on an Agilent Bioanalyser high sensitivity DNA chip (size range 150-2000bp) and by Qubit® dsDNA BR (Molecular Probes).

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

characteristic: organism part

text: IL7R+; wild type

characteristic: phenotype

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: pro-B cell

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of prepuce of penis

text: IL7R+; wild type

text: induced pluripotent stem cell

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: B cell

text: human

text: embryo

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: inner cell mass

text: LIN-CD34+CD45RA-; wild type

text: embryonic stem cell

text: Homo sapiens


text: UCL Cancer Institute

text: public

text: ArrayExpress

text: B cell

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

characteristic: organism part

text: LIN-CD34+CD45RA-; wild type

characteristic: phenotype

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: pro-B cell

text: human

characteristic: common name

text: Protocols: MIFF3 IPS (https://hpscreg.eu/cell-line/UOSi001-B) and H1 ES cells were cultured on matrigel-coated (Corning) 6 well plates in either mTeSR™1 (Stem Cell Technologies) or StemFit®AK (Ajinomoto Co., Inc, Tokyo, Japan). Cultures were passaged every 4-7 days using gentle dissociation reagent (SCT) according to manufacturer’s instructions in the presence of Y27632 rock inhibitor. For these studies we used a human induced PSC (hIPSC) line, MIFF3, and corroborated our findings using the H1 human embryonic stem cell (hESC) line. An OP9/MS5 sequential co-culture system was used to differentiate hPSCs to the B cell lineage MIFF3 IPS cells were transformed with an ETV6-RUNX1 knock-in construct 22-400 cells were directly sorted into 800μl Trizol® and frozen at -80oC. RNA was extracted in the aqueous phase after addition of 160ul chloroform, precipitated with an equal volume of isopropanol supplemented with 20μg linear polyacrylamide and washed once in fresh 80% ethanol. The RNA pellet was re-suspended in 3μl water at 50oC for 10 minutes and then kept on ice. 100pg (or 1μl of stock if unquantifiable) of RNA used for first strand synthesis using SMARTER v3 (Clontech) before 16 cycles of amplification according to manufacturer’s instructions. cDNA was purified on Agencourt ®AMPure®XP magnetic beads, washed twice with fresh 80% ethanol and eluted in 17μl elution buffer. 1μl cDNA was checked and quantified on an Agilent Bioanalyser high sensitivity DNA chip. Sequencing libraries were produced using Illumina® Nextera XT tagmentation according to manufacturer’s instructions except using 150pg input cDNA, 5mins tagmentation and amplification 12 cycles using Illumina® XT 24 index primer kit. Libraries were cleaned using an equal volume (50μl) Agencourt ®AMPure®XP magnetic beads and re-suspended in 20μl elution buffer. Libraries were checked and quantified on an Agilent Bioanalyser high sensitivity DNA chip (size range 150-2000bp) and by Qubit® dsDNA BR (Molecular Probes).

characteristic: description

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

text: RUNX1 overexpression

text: induced pluripotent stem cell

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: pro-B cell

text: human

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin of prepuce of penis

text: IL7R+; RUNX1 overexpression

text: induced pluripotent stem cell

text: Homo sapiens

characteristic: title


text: UCL Cancer Institute

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: B cell

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

characteristic: organism part

text: LIN-CD34+CD45RA-; RUNX1 overexpression

text: induced pluripotent stem cell

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: pro-B cell

text: human

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin of prepuce of penis

text: wild type

characteristic: phenotype

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AARHUS UNIVERSITY, DENMARK

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:AARHUS UNIVERSITY, DENMARK

characteristic: Submitter Id

characteristic: collection date

text: Area of cropland

characteristic: environment (biome)

text: vineyard

characteristic: environment (feature)

text: calcisol

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: bacterium

text: Impact of G2 Enhancer on DNA extraction from recalcitrant soil core samples

characteristic: project name

text: bacterium

text: sequencing by synthesis

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: Human mastadenovirus B

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Human mastadenovirus B

characteristic: common name

text: Human mastadenovirus B

characteristic: organism

text: Human mastadenovirus B

characteristic: subject id

characteristic: title


text: Human herpesvirus 6

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Human herpesvirus 6

text: Human herpesvirus 6

text: Human herpesvirus 6


text: Human betaherpesvirus 5

text: SC

text: public

text: Human cytomegalovirus

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5


text: Human mastadenovirus E

text: SC

text: public

text: Human mastadenovirus E

text: Human mastadenovirus E

text: Human mastadenovirus E


text: UNIVERSIDADE DE BRASILIA

text: public

tag: Namespace:UNIVERSIDADE DE BRASILIA

characteristic: collection date

text: Brazil

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

characteristic: isolation source

characteristic: lat lon

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Department of Environmental Biotechnology

text: tench

text: aquatic biome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Poland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Tinca tinca

text: Tench gut microbiome

characteristic: project name

text: Tinca tinca

text: Illumina

characteristic: sequencing method

text: Tench gut microbiome


text: Department of Environmental Biotechnology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: tench

characteristic: common name

text: aquatic biome

text: lake

text: water

text: Poland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Tinca tinca

characteristic: organism

text: Tench gut microbiome

text: Tinca tinca

text: Illumina

text: Tench gut microbiome

characteristic: title


Bn Rhizobiome 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bn Rhizobiome 1

tag: Namespace:Institute of Technology Carlow

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

text: Conservation Strip Tillage Leads to Permanent Alterations in the Rhizosphere Microbiota of Brassica napus Crops


Bn Rhizobiome 2

text: Institute of Technology Carlow

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 2

text: Plant rhizosphere

text: Agriculture fields

text: Soil

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 3

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 3

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bn Rhizobiome 4

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 5

text: Institute of Technology Carlow

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 5

text: Plant rhizosphere

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 6

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 6

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 7

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 8

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 8

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 9

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 9

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 10

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 11

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 11

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 12

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 12

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 13

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 14

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 14

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 15

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 15

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 16

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 17

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 17

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 18

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 18

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 19

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 20

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 20

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 21

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 21

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 22

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 23

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 23

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 24

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 24

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 25

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 26

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 26

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 27

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 27

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 28

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 29

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 29

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 30

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 30

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 31

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 32

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 32

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 33

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 33

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


Bn Rhizobiome 34

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Technology Carlow

characteristic: INSDC center name

text: public

text: Bn Rhizobiome 34

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

characteristic: project name

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: sequencing method


Bn Rhizobiome 35

text: Institute of Technology Carlow

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Bn Rhizobiome 35

text: Plant rhizosphere

characteristic: environment (biome)

text: Agriculture fields

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Ireland

text: host-associated

text: metagenome

text: rhizosphere metagenome

characteristic: organism

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq

characteristic: title


Bn Rhizobiome 36

text: Institute of Technology Carlow

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Bn Rhizobiome 36

characteristic: Submitter Id

characteristic: collection date

text: Plant rhizosphere

text: Agriculture fields

text: Soil

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: rhizosphere metagenome

text: Brassica napus rhizoshere microbiome

text: rhizosphere metagenome

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF BASEL

text: WBC

characteristic: cell type

text: human

characteristic: common name

characteristic: description

characteristic: donor

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: WBC

characteristic: sample type

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br23 (used as a reference)


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CTC

characteristic: clusterid

text: human

characteristic: ctc cluster size

text: CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br23

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

text: WBC

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster-WBC

text: Homo sapiens

text: WBC isolated from a CTC-cluster-WBC sample from donor Br23 (used as a reference)


text: UNIVERSITY OF BASEL

text: public

text: CTC-WBC

characteristic: cell type

text: human

characteristic: common name

characteristic: description

characteristic: donor

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster-WBC

text: Homo sapiens

text: CTC-WBC isolated from a CTC-cluster-WBC sample from donor Br23


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CTC

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-single

characteristic: sample type

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br23


text: UNIVERSITY OF BASEL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CTC

text: human

text: non-CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br25


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

text: CTC

text: human

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br26

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

text: CTC

characteristic: clusterid

text: human

characteristic: ctc cluster size

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br26


text: UNIVERSITY OF BASEL

text: public

text: WBC

characteristic: cell type

text: human

characteristic: common name

characteristic: description

characteristic: donor

text: non-CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br26 (used as a reference)


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CTC

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-single

characteristic: sample type

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br30


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: WBC

text: human

text: CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br30 (used as a reference)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

text: CTC-WBC

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single-WBC

text: Homo sapiens

text: CTC-WBC isolated from a CTC-single-WBC sample from donor Br30

characteristic: title


text: UNIVERSITY OF BASEL

text: public

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characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: CTC-WBC-donor

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text: Homo sapiens

text: patient

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text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br37


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characteristic: INSDC first public

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characteristic: donor

text: CTC-WBC-donor

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text: Homo sapiens

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text: Homo sapiens

text: CTC-WBC isolated from a CTC-single-WBC sample from donor Br37


text: UNIVERSITY OF BASEL

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text: CTC isolated from a CTC-single sample from donor Br38


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF BASEL

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characteristic: clusterid

text: human

characteristic: ctc cluster size

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characteristic: sample type

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br38


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

characteristic: SRA accession

characteristic: Submitter Id

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text: human

text: CTC-WBC-donor

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characteristic: organism

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br39


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

text: WBC

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

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text: Homo sapiens

text: WBC isolated from a CTC-single-WBC sample from donor Br44 (used as a reference)

characteristic: title


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

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characteristic: donor

text: CTC-WBC-donor

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text: Homo sapiens

text: Homo sapiens

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text: CTC isolated from a CTC-single sample from donor Br44


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characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

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text: Homo sapiens

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text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br44 (used as a reference)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: public

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characteristic: clusterid

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characteristic: INSDC center name

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characteristic: SRA accession

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text: human

text: non-CTC-WBC-donor

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characteristic: organism

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br11 (used as a reference)


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characteristic: INSDC last update

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text: CTC

text: human

characteristic: common name

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text: CTC isolated from a CTC-single sample from donor Br11

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text: CTC isolated from a CTC-single sample from donor Br39


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

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characteristic: clusterid

text: human

characteristic: ctc cluster size

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text: Homo sapiens

text: patient

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text: CTC-cluster-WBC

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text: CTC isolated from a CTC-cluster-WBC sample from donor Br39


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CTC-WBC

characteristic: cell type

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

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characteristic: sample type

text: Homo sapiens

text: CTC-WBC isolated from a CTC-cluster-WBC sample from donor Br39


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characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CTC

text: human

characteristic: common name

characteristic: description

text: non-CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br45


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

characteristic: INSDC status

text: WBC

text: human

characteristic: donor

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br46 (used as a reference)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

text: CTC-WBC

characteristic: clusterid

text: human

characteristic: ctc cluster size

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster-WBC

text: Homo sapiens

text: CTC-WBC isolated from a CTC-cluster-WBC sample from donor Br7


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

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characteristic: cell type

text: human

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br11


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: WBC

text: human

characteristic: common name

characteristic: description

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: WBC

characteristic: sample type

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br45 (used as a reference)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

characteristic: INSDC status

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text: human

characteristic: donor

text: non-CTC-WBC-donor

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characteristic: organism

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br53


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

text: WBC

text: human

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br53 (used as a reference)

characteristic: title


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CTC

text: human

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br57


text: UNIVERSITY OF BASEL

text: public

characteristic: Submitter Id

text: CTC

characteristic: cell type

characteristic: clusterid

text: human

characteristic: ctc cluster size

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br57


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: WBC

text: human

characteristic: common name

characteristic: description

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: WBC

characteristic: sample type

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br57 (used as a reference)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

characteristic: INSDC status

text: CTC

text: human

characteristic: donor

text: CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: CTC-single-WBC

text: Homo sapiens

text: CTC isolated from a CTC-single-WBC sample from donor Br57


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: WBC

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single-WBC

text: Homo sapiens

text: WBC isolated from a CTC-single-WBC sample from donor Br57 (used as a reference)

characteristic: title


text: UNIVERSITY OF BASEL

text: public

characteristic: Submitter Id

text: CTC

characteristic: cell type

text: human

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br61


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: WBC

characteristic: clusterid

text: human

characteristic: ctc cluster size

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-cluster-WBC

text: Homo sapiens

text: WBC isolated from a CTC-cluster-WBC sample from donor Br61 (used as a reference)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

text: CTC

text: human

characteristic: common name

characteristic: description

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster-WBC

characteristic: sample type

text: Homo sapiens

text: CTC isolated from a CTC-cluster-WBC sample from donor Br61


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

characteristic: INSDC status

text: CTC

text: human

characteristic: donor

text: CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br61


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CTC

characteristic: cell type

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

characteristic: title


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: WBC

characteristic: clusterid

text: human

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single-WBC

text: Homo sapiens

text: WBC isolated from a CTC-single-WBC sample from donor Br61 (used as a reference)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

text: CTC

text: human

characteristic: common name

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-single-WBC

text: Homo sapiens

text: CTC isolated from a CTC-single-WBC sample from donor Br61


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

text: CTC-WBC

text: human

characteristic: description

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single-WBC

characteristic: sample type

text: Homo sapiens

text: CTC-WBC isolated from a CTC-single-WBC sample from donor Br61


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: WBC

text: human

characteristic: donor

text: CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br61 (used as a reference)


text: UNIVERSITY OF BASEL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: WBC

characteristic: cell type

text: human

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: WBC

text: Homo sapiens

text: WBC isolated from a WBC sample from donor Br11 (used as a reference)

characteristic: title


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CTC

text: human

text: non-CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br11


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

text: CTC

characteristic: clusterid

text: human

characteristic: common name

characteristic: ctc cluster size

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br23


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

text: CTC

text: human

characteristic: description

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-single

characteristic: sample type

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br39


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CTC

text: human

characteristic: donor

text: CTC-WBC-donor

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br39


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: CTC

characteristic: cell type

text: human

text: non-CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br45

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BASEL

text: public

text: CTC-WBC

text: human

characteristic: common name

text: CTC-WBC-donor

characteristic: donor type

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single-WBC

text: Homo sapiens

text: CTC-WBC isolated from a CTC-single-WBC sample from donor Br57


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BASEL

text: public

text: CTC

text: human

characteristic: description

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-single

text: Homo sapiens

text: CTC isolated from a CTC-single sample from donor Br57


text: UNIVERSITY OF BASEL

characteristic: INSDC center name

text: public

text: CTC

text: human

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

characteristic: origin

text: CTC-single

characteristic: sample type

text: Homo sapiens


text: UNIVERSITY OF BASEL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CTC

characteristic: clusterid

text: human

characteristic: ctc cluster size

characteristic: donor

text: CTC-WBC-donor

text: Homo sapiens

text: Homo sapiens

text: patient

text: CTC-cluster

text: Homo sapiens

text: CTC isolated from a CTC-cluster sample from donor Br7


text: CRI-FEM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: 24 celsius degrees

characteristic: air temperature regimen

characteristic: collection date

text: wine grape

text: sand-peat mixture (7:3 v/v)

characteristic: culture rooting medium

text: Two-year-old plants of the international V.vinifera cultivar Pinot noir V. vinifera were grown in 5-L pots filled with sand-peat mixture (7:3 v/v), regularly watered via a drip system and fertilized twice a year with the controlled release fertilizer (19% N; 6 % P2O5; 11 % K2O; 2 % MgO; 0.5 % Fe) OsmocoteTopdress (ICL Specialty Fertilizers, ICL Italia Treviso), in greenhouse (24 °C, 16-h photoperiod, 70% relative humidity) at the Department of Agricultural and Environmental Sciences in Milan (Italy).

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: DOI: 10.5073/vitis.2016.55.121-128

characteristic: isolation and growth condition

characteristic: light regimen

text: Vitis vinifera

characteristic: organism

text: wine grape

characteristic: organism common name

text: PO:0007118; 2.06 main shoot and axillary shoots visible at six nodes stage; The stage at which main shoot and axillary shoots at six nodes are visible.

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: plant axis

characteristic: plant structure

text: asexual

characteristic: propagation

text: 5-L pots, 1 plants/pot

characteristic: rooting conditions

text: 19%N; 6 % P2O5; 11 % K2O

characteristic: rooting medium macronutrients

text: 2 % MgO; 0.5 % Fe

characteristic: rooting medium micronutrients

text: healthy

characteristic: sample health state

text: Vitis vinifera

text: Mgaloblishvili N

characteristic: subspecific genetic lineage name

text: cultivar

characteristic: subspecific genetic lineage rank

text: Mgaloblishvili not inoculated


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRSTEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mediterranean forest

characteristic: environment (biome)

text: creek

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Reigous water

characteristic: experimental factor

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: metagenomes

text: HRT experiment

characteristic: project name

text: metagenomes

text: illumina

characteristic: sequencing method

text: Biofilm community

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRSTEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Mediterranean forest

text: creek

text: water

text: channel under hydraulic retention time of 74 min

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: metagenomes

characteristic: organism

text: HRT experiment

text: metagenomes

text: illumina

text: Biofilm community


text: IRSTEA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mediterranean forest

characteristic: environment (biome)

text: creek

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: channel under hydraulic retention time of 130 min

characteristic: experimental factor

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: microbial mat/biofilm

text: metagenomes

text: HRT experiment

text: metagenomes

text: illumina

text: Biofilm community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IRSTEA

text: public

text: Mediterranean forest

text: creek

text: water

text: channel under hydraulic retention time of 200 min

text: France

characteristic: geographic location (elevation)

text: metagenome

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: metagenomes

text: HRT experiment

characteristic: project name

text: metagenomes

text: illumina

characteristic: sequencing method

text: Biofilm community

characteristic: title


text: IRSTEA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mediterranean forest

text: creek

text: water

text: channel under hydraulic retention time of 456 min

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: microbial mat/biofilm

text: metagenomes

characteristic: organism

text: HRT experiment

text: metagenomes

text: illumina

text: Biofilm community


E-MTAB-6430:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 1

tag: Namespace:Division of Genomics of Development and Disease, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia, 4072

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunosuppressed

characteristic: clinical history

text: human

characteristic: common name

characteristic: date collected

text: Protocols: Skin lesions samples were collected from consenting patients that presented to the Dermatology department in Princess Alexandra Hospital from 2011-2013 Total RNA was extracted using TRIzol (Life Technologies, ThermoFisher Scientific, Victoria, Australia) and RNA purification was performed using the RNeasy mini kit (Qiagen, Victoria, Australia). RNA was assessed for quality and quantity using a Nanodrop instrument. RNA sequencing libraries of poly (A) RNA from 500ng total RNA obtained from AK, IEC and SCC skin lesions were generated using the TruSeq unstranded mRNA library prep kit for Illumina multiplexed sequencing (Illumina, San Diego, CA, USA).

characteristic: description

text: intraepidermal carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: forearm

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-6430:Sample 2

text: Division of Genomics of Development and Disease, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia, 4072

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: immunocompetent

text: human

text: actinic keratosis

text: Homo sapiens

text: Homo sapiens

text: skin

text: leg

text: Homo sapiens

text: male

text: Sample 2

characteristic: title


E-MTAB-6430:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunocompetent

text: human

text: actinic keratosis

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: leg

text: Homo sapiens

text: male

text: Sample 3


E-MTAB-6430:Sample 4

text: public

text: E-MTAB-6430:Sample 4

text: ArrayExpress

text: immunosuppressed

characteristic: clinical history

text: human

characteristic: common name

characteristic: date collected

characteristic: description

text: intraepidermal carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: male

text: Sample 4


E-MTAB-6430:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 5

text: ArrayExpress

text: immunocompetent

text: human

text: UC

text: Homo sapiens

text: Homo sapiens

text: skin

text: scalp

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 5


E-MTAB-6430:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: immunocompetent

text: human

text: actinic keratosis

text: Homo sapiens

text: Homo sapiens

text: skin

text: scalp

text: Homo sapiens

text: male

text: Sample 6

characteristic: title


E-MTAB-6430:Sample 7

text: public

text: E-MTAB-6430:Sample 7

text: ArrayExpress

characteristic: broker name

text: immunocompetent

characteristic: clinical history

text: human

characteristic: common name

characteristic: date collected

characteristic: description

text: actinic keratosis

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: scalp

text: Homo sapiens

text: male

text: Sample 7


E-MTAB-6430:Sample 8

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 8

text: ArrayExpress

text: immunocompetent

text: human

text: actinic keratosis

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: scalp

text: Homo sapiens

text: male

text: Sample 8


E-MTAB-6430:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: immunosuppressed

text: human

text: intraepidermal carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: male

characteristic: sex

text: Sample 9


E-MTAB-6430:Sample 10

text: public

text: E-MTAB-6430:Sample 10

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunosuppressed

characteristic: clinical history

text: human

characteristic: common name

characteristic: date collected

text: actinic keratosis

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: male

text: Sample 10

characteristic: title


E-MTAB-6430:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6430:Sample 11

text: ArrayExpress

text: immunosuppressed

text: human

characteristic: description

text: intraepidermal carcinoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: leg

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 11


E-MTAB-6430:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 12

text: ArrayExpress

text: immunosuppressed

text: human

text: intraepidermal carcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: forearm

text: Homo sapiens

text: male

text: Sample 12


E-MTAB-6430:Sample 13

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 13

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunosuppressed

characteristic: clinical history

text: human

characteristic: common name

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: forearm

text: Homo sapiens

text: male

characteristic: sex

text: Sample 13


E-MTAB-6430:Sample 14

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6430:Sample 14

text: ArrayExpress

text: immunosuppressed

text: human

characteristic: date collected

characteristic: description

text: actinic keratosis

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

text: forearm

text: Homo sapiens

text: male

text: Sample 14

characteristic: title


E-MTAB-6430:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 15

text: ArrayExpress

text: immunosuppressed

text: human

text: actinic keratosis

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: forearm

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 15


E-MTAB-6430:Sample 16

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 16

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunosuppressed

characteristic: clinical history

text: human

text: actinic keratosis

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: forearm

text: Homo sapiens

text: female

text: Sample 16


E-MTAB-6430:Sample 17

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6430:Sample 17

text: ArrayExpress

text: immunosuppressed

text: human

characteristic: common name

characteristic: date collected

characteristic: description

text: actinic keratosis

text: Homo sapiens

text: Homo sapiens

text: skin

text: forearm

text: Homo sapiens

text: male

characteristic: sex

text: Sample 17


E-MTAB-6430:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 18

text: ArrayExpress

text: immunosuppressed

text: human

text: actinic keratosis

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

text: scalp

text: Homo sapiens

text: male

text: Sample 18

characteristic: title


E-MTAB-6430:Sample 19

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 19

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunocompetent

characteristic: clinical history

text: human

text: squamous cell carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: face

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 19


E-MTAB-6430:Sample 20

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6430:Sample 20

text: ArrayExpress

text: immunocompetent

text: human

characteristic: common name

characteristic: date collected

text: squamous cell carcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: face

text: Homo sapiens

text: male

text: Sample 20


E-MTAB-6430:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 21

text: ArrayExpress

text: immunosuppressed

text: human

characteristic: description

text: squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: face

text: Homo sapiens

text: male

characteristic: sex

text: Sample 21


E-MTAB-6430:Sample 22

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 22

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunosuppressed

characteristic: clinical history

text: human

text: actinic keratosis

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

text: face

text: Homo sapiens

text: male

text: Sample 22

characteristic: title


E-MTAB-6430:Sample 23

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6430:Sample 23

text: ArrayExpress

text: immunosuppressed

text: human

characteristic: common name

characteristic: date collected

text: actinic keratosis

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: face

characteristic: sampling site

text: Homo sapiens

text: male

text: Sample 23


E-MTAB-6430:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6430:Sample 24

text: ArrayExpress

text: immunosuppressed

text: human

text: squamous cell carcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: arm

text: Homo sapiens

text: female

text: Sample 24


E-MTAB-6430:Sample 25

characteristic: External Id

text: public

text: E-MTAB-6430:Sample 25

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: immunosuppressed

characteristic: clinical history

text: human

characteristic: description

text: actinic keratosis

text: Homo sapiens

text: Homo sapiens

text: skin

text: arm

text: Homo sapiens

text: male

characteristic: sex

text: Sample 25


text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:University of Geneva

characteristic: collection date

text: marine sub-littoral zone

characteristic: environment (biome)

text: marine sediment

characteristic: environment (feature)

text: marine sediment

characteristic: environment (material)

text: Yes

characteristic: environmental sample

characteristic: further details

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: uncultured eukaryote

text: fwd_name: F04mod (5-GCTTGWCTCAAAGATTAAGCC-3) rev_name: R22mod (5-CCTGCTGCCTTCCTTRGA-3)

characteristic: pcr primers

text: Van Veen grab

characteristic: sample collection device or method

text: uncultured eukaryote

characteristic: target gene

characteristic: target subfragment

text: Eukaryotes V1V2 marker from marine sediment

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: Human Cell line (HEK293)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id


text: Plasmodium falciparum

text: SC

characteristic: INSDC last update

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Vibrio cholerae

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae


Labrenzia sp. strain EL143

text: Instituto Superior Tecnico

text: public

text: Labrenzia sp. strain EL143

tag: Namespace:Instituto Superior Tecnico

characteristic: collection date

text: Draft genome sequence of Labrenzia sp. strain EL143, a coral-associated alphaproteobacterium with versatile symbiotic living capability and strong halogen degradation potential

characteristic: description

text: Portugal

characteristic: geographic location (country and/or sea)

text: Faro

characteristic: geographic location (region and locality)

text: Eunicella labiata

characteristic: host scientific name

text: Gorgonian coral

characteristic: isolation source

text: 36.979778 N 7.989111 W

characteristic: lat lon

text: Labrenzia sp. EL143

text: Labrenzia sp. EL143

text: Genome sequence of Labrenzia sp. strain EL143


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Research Centre for Genomics and Bioinformatics, Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Fiorenzuola d’Arda, Italy

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bread wheat

characteristic: cultivar

text: Protocols: spikelets from plants at the stage of mid-anthesis were both mock-inoculated (water) or inoculated with Fusarium graminearum isolate DAOM 180378 for 3 days. At this time point, rachis or spikelets were harvested for RNA extraction T. aestivum Plants (genotypes 2890 or 2618 ) were grown in a controlled-environment cabinet for 16h light at 20°C and 8h dark at 16°C until mid-anthesis . Total RNAs were extracted by the use of the TRIzol reagent (Life Technologies) and treated by DNase I (Ambion) following provided indications. libraries were prepared using 1 μg of total RNA, purified by the RNeasy Mini Kit (QIAGEN), from all the three biological replicates of each sample related to the pair 2-2618/2-2890 and the TruSeq RNA sample preparation kit (Illumina), according to manufactureres’ instructions. Libraries were quantified through qRT-PCR, as recommended by the protocol,

text: mid-anthesis

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: infect

text: Triticum aestivum

text: Triticum aestivum

text: leaf rachis

characteristic: organism part

text: resistant to Fusarium head blight

characteristic: phenotype

text: Triticum aestivum

characteristic: title


text: Research Centre for Genomics and Bioinformatics, Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Fiorenzuola d’Arda, Italy

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: bread wheat

characteristic: common name

characteristic: description

text: mid-anthesis

text: wild type genotype

text: Fusarium graminearum isolate DAOM 180378

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: leaf rachis

text: resistant to Fusarium head blight

text: Triticum aestivum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bread wheat

text: mid-anthesis

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: spikelet

text: resistant to Fusarium head blight

text: Triticum aestivum


text: public

text: ArrayExpress

text: bread wheat

characteristic: cultivar

text: mid-anthesis

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Triticum aestivum

text: Triticum aestivum

text: leaf rachis

characteristic: organism part

text: resistant to Fusarium head blight

characteristic: phenotype

text: Triticum aestivum


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: bread wheat

text: mid-anthesis

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: spikelet

text: resistant to Fusarium head blight

text: Triticum aestivum

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: bread wheat

characteristic: common name

characteristic: description

text: mid-anthesis

text: wild type genotype

characteristic: infect

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: leaf rachis

text: susceptible to Fusarium head blight

text: Triticum aestivum


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bread wheat

text: mid-anthesis

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: spikelet

text: susceptible to Fusarium head blight

text: Triticum aestivum


characteristic: INSDC center name

text: public

text: ArrayExpress

text: bread wheat

characteristic: cultivar

text: mid-anthesis

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Triticum aestivum

text: Triticum aestivum

text: spikelet

characteristic: organism part

text: susceptible to Fusarium head blight

characteristic: phenotype

text: Triticum aestivum


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: bread wheat

text: mid-anthesis

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: leaf rachis

text: susceptible to Fusarium head blight

text: Triticum aestivum

characteristic: title


text: Mycobacterium bovis

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Mycobacterium bovis

characteristic: common name

text: Mycobacterium bovis

characteristic: organism

text: Mycobacterium bovis

characteristic: subject id


text: adult

characteristic: ArrayExpress-DevelopmentalStage

text: female

characteristic: ArrayExpress-Sex

text: Schistosoma mansoni

characteristic: ArrayExpress-Species

text: Puerto Rican

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Schistosoma mansoni

text: Schistosoma mansoni

text: genomic DNA from clonal adult females, resulting from monomiracidial infection

characteristic: sample description

text: Schistosoma mansoni

text: Puerto Rican

characteristic: strain

text: Schistosoma mansoni


text: DTU Biosustain

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:DTU Biosustain

characteristic: Submitter Id

characteristic: collection date

text: Pseudomonas aeruginosa

text: Whole genome sequening of genomic DNA deriving from a representative clone isolated from sputum sample P30M0_S2 on 23/06/2016 collected from patient P30M0. The clone belongs to the Danish clone type DK01.

characteristic: description

text: sputum sample

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: PA-P30M0 clinical isolate, whole genome sequencing, DK01 clone type