characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Normal

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Normal

characteristic: colon

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: Normal

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: Effect of BPA on gut microbiota in rabbits

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Normal

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Fatty/HD ++

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: A few intra epithelial LC

characteristic: colon

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

text: Missing: Not provided

characteristic: jejunitis

characteristic: latitude

text: slight periportal infiltration

characteristic: liver

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Clear LP

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: HD+, periportal In

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: BPA

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: A few pyk cells in epithelium and crypts

characteristic: colon

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: FD +++, Inflammatory cells in blood vessels and periportal

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: BPA

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Eosinophils in Lamina Propria

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: HD+

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: BPA

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Normal

characteristic: colon

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: periportal - focal lymphocytic infiltration

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: female

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Normal

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Normal

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: female

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Normal

characteristic: colon

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: Fatty/HD ++

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: female

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: A few intra epithelial LC

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Missing: Not provided

text: Missing: Not provided

text: slight periportal infiltration

text: Missing: Not provided

text: Missing: Not provided

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: female

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: jejunitis

characteristic: latitude

text: Missing: Not provided

characteristic: liver

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: BPA

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: A few lymphocytes in Lamina Propria

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Parenchyma periportal infiltration

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: female

characteristic: sex

characteristic: title

text: BPA

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Clear LP

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: HD+, periportal In

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: female

text: BPA

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Eosinophils in Lamina Propria

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: HD+

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: female

characteristic: sex

characteristic: title

text: BPA

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Eosinophils in Lamina Propria

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: HD+

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: BPA

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: A few lymphocytes in Lamina Propria

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Parenchyma periportal infiltration

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: BPA

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Normal

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Normal

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Normal

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Normal

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: F/HD - focal, focal lumpocyte infiltration -

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Normal

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Fatty/HD ++

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: A few intra epithelial LC

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

text: Missing: Not provided

characteristic: jejunitis

characteristic: latitude

text: slight periportal infiltration

characteristic: liver

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: control

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: A few intra epithelial LC

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: Missing: Not provided

text: Missing: Not provided

text: slight periportal infiltration

text: Missing: Not provided

text: Missing: Not provided

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: control

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Missing: Not provided

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

characteristic: jejunitis

characteristic: latitude

text: Missing: Not provided

characteristic: liver

characteristic: longitude

text: Missing: Not provided

text: Missing: Not provided

text: Missing: Not provided

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: BPA

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

characteristic: collection date

text: Clear LP

characteristic: colon

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: herbivore

characteristic: diet

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: Rabbit

text: Oryctolagus cuniculus

characteristic: host scientific name

text: HD+, periportal In

text: gut metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: stool

text: gut metagenome

text: male

characteristic: sex

characteristic: title

text: BPA

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

text: UBERON:feces

text: Inflammation LP

text: GAZ:United States of America

text: herbivore

text: Harlan Global 2030, timothy hay

text: TRUE

text: Missing: Not provided

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: hepatitis

text: Rabbit

characteristic: host common name

text: Oryctolagus cuniculus

characteristic: host subject id

characteristic: host taxid

characteristic: jejunitis

characteristic: latitude

text: HD+++/periportal infiltration

characteristic: liver

characteristic: longitude

text: gut metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: stool

characteristic: sample type

text: gut metagenome

text: male

text: BPA

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Missing: Not provided

characteristic: age

text: days

characteristic: age unit

text: days

characteristic: age units

characteristic: altitude

text: Missing: Not provided

characteristic: bmi

characteristic: collection date

text: GAZ:United States of America

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

text: Missing: Not provided

characteristic: dob

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

text: sterile water

text: USA:CO:Fort Collins

text: Missing: Not provided

text: Missing: Not provided

text: metagenome

characteristic: organism

text: Penn

text: FALSE

text: TRUE

text: control blank

text: metagenome

characteristic: title

text: blank

text: Missing: Not provided

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Missing: Not provided

text: days

text: days

text: Missing: Not provided

text: GAZ:United States of America

text: TRUE

text: Missing: Not provided

text: urban biome

text: research facility

text: misc environment

characteristic: env package

text: sterile water

text: USA:CO:Fort Collins

characteristic: geo loc name

text: Missing: Not provided

characteristic: height

text: Missing: Not provided

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: Penn

text: FALSE

text: TRUE

characteristic: public

text: control blank

characteristic: sample type

text: metagenome

text: blank

characteristic: treatment

text: Missing: Not provided

characteristic: weight

text: Missing: Not provided


E-MTAB-6081:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6081:Sample 12

tag: Namespace:Boehringer Ingelheim Pharma GmbH & Co. KG  Target Discovery Research

characteristic: Submitter Id

text: 7 to 8

unit: week

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Male Wistar Han rats (Crl:WI(Han)) and male BL/6J mice (C57BL/6J) were obtained from Charles River Laboratories (Germany). Experimental protocols concerning the use of laboratory animals were reviewed by a German Federal Ethics Committee and approved by German governmental authorities. Animals were housed in groups of three on a 12-h light/dark cycle and fed ad libitum a standard pelleted rodent diet (Diet No. 3438, Provimi Kliba Switzerland) with free access to water. Rats with a body weight of 160-180 g and rats and mice at the age of 7-8 weeks were used for tissue sampling. Retrobulbar blood samples were collected in the morning at 9 a.m. under isofluran anesthesia immediately prior to dissection. Animals (n = 3 for each species) were sacrificed thereafter by intraperitoneal injection of pentobarbital (rats) or cervical dislocation (mice) and tissues (esophagus, stomach, duodenum, jejunum, ileum, colon, pancreas, liver, thymus, kidney, heart, brain, quadriceps muscle) were harvested and transferred immediately to RNA Later at 4 degrees celsius. Total RNAs were individually extracted using the Ambion Magmax™-96 total RNA isolation kit (Life Sciences) according to the manufacturer’s instructions. Briefly, 5 mg of tissue was placed in the lysis solution and homogenized in Qiagen Tissuelyzer™ for a period of 30 sec. Nucleic acids were captured onto magnetic beads, washed and treated with DNase. Total RNA was then eluted in 50 μl elution buffer. RNA quality and concentration was measured using an RNA Pico chip on an Agilent Bioanalyzer. The Sequencing library preparation has been done using 200 ng of total RNA input with the TrueSeq RNA Sample Prep Kit v2-Set B (RS-122-2002, Illumina Inc, San Diego, CA) producing a 275bp fragment including adapters in average size. In the final step before sequencing, eight individual libraries were normalized and pooled together using the adapter indices supplied by the manufacturer.

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

characteristic: organism part

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 12

characteristic: title


E-MTAB-6081:Sample 25

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Boehringer Ingelheim Pharma GmbH & Co. KG Target Discovery Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 25

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: Sample 25


E-MTAB-6081:Sample 38

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6081:Sample 38

characteristic: Submitter Id

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

text: Sample 38


E-MTAB-6081:Sample 19

text: public

text: E-MTAB-6081:Sample 19

text: 7 to 8

text: ArrayExpress

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

characteristic: organism part

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 19


E-MTAB-6081:Sample 32

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 32

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: Sample 32

characteristic: title


E-MTAB-6081:Sample 7

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 7

characteristic: Submitter Id

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: Sample 7


E-MTAB-6081:Sample 16

text: public

text: E-MTAB-6081:Sample 16

text: 7 to 8

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: duodenum

characteristic: organism part

text: Mus musculus

text: male

text: Sample 16


E-MTAB-6081:Sample 29

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 29

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: duodenum

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 29


E-MTAB-6081:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 4

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: duodenum

text: Mus musculus

text: male

characteristic: strain

text: Sample 4

characteristic: title


E-MTAB-6081:Sample 11

text: public

text: E-MTAB-6081:Sample 11

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: esophagus

text: Mus musculus

text: male

text: Sample 11


E-MTAB-6081:Sample 24

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 24

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: esophagus

characteristic: organism part

text: Mus musculus

text: male

text: Sample 24


E-MTAB-6081:Sample 37

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 37

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: esophagus

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 37


E-MTAB-6081:Sample 23

text: public

text: E-MTAB-6081:Sample 23

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

characteristic: strain

text: Sample 23

characteristic: title


E-MTAB-6081:Sample 36

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 36

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

text: Sample 36


E-MTAB-6081:Sample 18

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 18

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ileum

characteristic: organism part

text: Mus musculus

text: male

text: Sample 18


E-MTAB-6081:Sample 31

text: public

text: E-MTAB-6081:Sample 31

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ileum

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 31


E-MTAB-6081:Sample 6

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 6

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ileum

text: Mus musculus

text: male

characteristic: strain

text: Sample 6

characteristic: title


E-MTAB-6081:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 17

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: jejunum

text: Mus musculus

text: male

text: Sample 17


E-MTAB-6081:Sample 30

text: public

text: E-MTAB-6081:Sample 30

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: jejunum

characteristic: organism part

text: Mus musculus

text: male

text: Sample 30


E-MTAB-6081:Sample 5

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 5

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: jejunum

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 5


E-MTAB-6081:Sample 20

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 20

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male

characteristic: strain

text: Sample 20

characteristic: title


E-MTAB-6081:Sample 33

text: public

text: E-MTAB-6081:Sample 33

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male

text: Sample 33


E-MTAB-6081:Sample 8

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 8

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: kidney

characteristic: organism part

text: Mus musculus

text: male

text: Sample 8


E-MTAB-6081:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 14

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 14


E-MTAB-6081:Sample 2

text: public

text: E-MTAB-6081:Sample 2

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: strain

text: Sample 2

characteristic: title


E-MTAB-6081:Sample 27

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 27

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: Sample 27


E-MTAB-6081:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 1

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: pancreas

characteristic: organism part

text: Mus musculus

text: male

text: Sample 1


E-MTAB-6081:Sample 13

text: public

text: E-MTAB-6081:Sample 13

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: pancreas

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 13


E-MTAB-6081:Sample 26

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 26

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: male

characteristic: strain

text: Sample 26

characteristic: title


E-MTAB-6081:Sample 21

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 21

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: quadriceps

text: Mus musculus

text: male

text: Sample 21


E-MTAB-6081:Sample 34

text: public

text: E-MTAB-6081:Sample 34

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: quadriceps

characteristic: organism part

text: Mus musculus

text: male

text: Sample 34


E-MTAB-6081:Sample 9

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 9

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: quadriceps

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 9


E-MTAB-6081:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 15

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: male

characteristic: strain

text: Sample 15

characteristic: title


E-MTAB-6081:Sample 28

text: public

text: E-MTAB-6081:Sample 28

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: stomach

text: Mus musculus

text: male

text: Sample 28


E-MTAB-6081:Sample 3

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 3

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: stomach

characteristic: organism part

text: Mus musculus

text: male

text: Sample 3


E-MTAB-6081:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 10

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: thymus

characteristic: sample id

text: Mus musculus

text: male

characteristic: sex

text: Sample 10


E-MTAB-6081:Sample 22

text: public

text: E-MTAB-6081:Sample 22

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: thymus

text: Mus musculus

text: male

characteristic: strain

text: Sample 22

characteristic: title


E-MTAB-6081:Sample 35

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 35

text: 7 to 8

text: ArrayExpress

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: thymus

text: Mus musculus

text: male

text: Sample 35


E-MTAB-6081:Sample 51

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 51

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: brain

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 51


E-MTAB-6081:Sample 64

text: public

text: E-MTAB-6081:Sample 64

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 64


E-MTAB-6081:Sample 77

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 77

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 77

characteristic: title


E-MTAB-6081:Sample 45

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 45

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: colon

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 45


E-MTAB-6081:Sample 58

text: public

text: E-MTAB-6081:Sample 58

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: colon

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 58


E-MTAB-6081:Sample 71

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 71

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: colon

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 71


E-MTAB-6081:Sample 42

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 42

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: duodenum

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 42

characteristic: title


E-MTAB-6081:Sample 55

text: public

text: E-MTAB-6081:Sample 55

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: duodenum

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 55


E-MTAB-6081:Sample 68

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 68

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: duodenum

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 68


E-MTAB-6081:Sample 50

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 50

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: esophagus

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 50


E-MTAB-6081:Sample 63

text: public

text: E-MTAB-6081:Sample 63

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: esophagus

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 63

characteristic: title


E-MTAB-6081:Sample 76

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 76

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: esophagus

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 76


E-MTAB-6081:Sample 49

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 49

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: heart

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 49


E-MTAB-6081:Sample 62

text: public

text: E-MTAB-6081:Sample 62

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 62


E-MTAB-6081:Sample 75

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 75

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 75

characteristic: title


E-MTAB-6081:Sample 44

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 44

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: ileum

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 44


E-MTAB-6081:Sample 57

text: public

text: E-MTAB-6081:Sample 57

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: ileum

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 57


E-MTAB-6081:Sample 70

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 70

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: ileum

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 70


E-MTAB-6081:Sample 43

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 43

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: jejunum

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 43

characteristic: title


E-MTAB-6081:Sample 56

text: public

text: E-MTAB-6081:Sample 56

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: jejunum

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 56


E-MTAB-6081:Sample 69

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 69

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: jejunum

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 69


E-MTAB-6081:Sample 46

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 46

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: kidneys

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 46


E-MTAB-6081:Sample 59

text: public

text: E-MTAB-6081:Sample 59

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: kidneys

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 59

characteristic: title


E-MTAB-6081:Sample 72

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 72

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: kidneys

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 72


E-MTAB-6081:Sample 40

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 40

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: liver

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 40


E-MTAB-6081:Sample 53

text: public

text: E-MTAB-6081:Sample 53

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 53


E-MTAB-6081:Sample 66

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 66

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 66

characteristic: title


E-MTAB-6081:Sample 39

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 39

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pancreas

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 39


E-MTAB-6081:Sample 52

text: public

text: E-MTAB-6081:Sample 52

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: pancreas

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 52


E-MTAB-6081:Sample 65

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 65

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: pancreas

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 65


E-MTAB-6081:Sample 47

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 47

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: quadriceps

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 47

characteristic: title


E-MTAB-6081:Sample 60

text: public

text: E-MTAB-6081:Sample 60

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: quadriceps

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 60


E-MTAB-6081:Sample 73

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 73

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: quadriceps

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 73


E-MTAB-6081:Sample 41

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 41

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: stomach

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 41


E-MTAB-6081:Sample 54

text: public

text: E-MTAB-6081:Sample 54

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: stomach

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 54

characteristic: title


E-MTAB-6081:Sample 67

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 67

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: stomach

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 67


E-MTAB-6081:Sample 48

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6081:Sample 48

characteristic: Submitter Id

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: thymus

characteristic: organism part

text: Rattus norvegicus

text: male

text: Wistar Han

text: Sample 48


E-MTAB-6081:Sample 61

text: public

text: E-MTAB-6081:Sample 61

text: 7 to 8

characteristic: age

characteristic: animal id

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: thymus

characteristic: sample id

text: Rattus norvegicus

text: male

characteristic: sex

text: Wistar Han

text: Sample 61


E-MTAB-6081:Sample 74

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6081:Sample 74

text: 7 to 8

text: ArrayExpress

text: Norway rat

text: normal

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: thymus

text: Rattus norvegicus

text: male

text: Wistar Han

characteristic: strain

text: Sample 74

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CEH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Current understanding of the gut microbiota within the important bumblebee pollinator species, Bombus terrestris, is largely based upon the worker caste. However, the distinct phenotypic and behavioural differences that occur throughout development, and between castes, could have large impacts on the structure of host microbiota communities.We investigated the gut microbiota of different castes and larval stages as they developed in controlled and natural environments. This provides the first complete assessment of microbiota assembly across the B. terrestris lifecycle. We show that there were distinct differences in caste microbiota composition between development stages. The typical pathway of microbial colonisation in developing workers was mainly comprised of four dominant ‘core species’ which were abundant in colonies reared both in the lab and in the field. This suggests that the acquisition of dominant microbiota species is more influenced by maternal characteristics, while foraging affects the dynamics of rare species.

text: Gut

characteristic: environment (biome)

text: Gut

characteristic: environment (feature)

text: Gut

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenomes

text: Caste microbiota

characteristic: project name

text: metagenomes

text: Illumina MiSeq

characteristic: sequencing method

text: Environmental impacts on the development of caste-specific gut microbiota in bumblebees


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMIC OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:CHINESE ACADEMIC OF SCIENCE

text: Forest

text: Broad-leaved Korean pine mixed forest

text: soil

text: China

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: soil metagenome

characteristic: organism

text: Investigating microbial control on soil organic matter dynamics during forest succession

text: soil metagenome

text: Miseq

text: soil

characteristic: soil environmental package

text: Soil organic matter as a proxy for assessing ecosystem change: Insights from soil prokaryotic communities in a successional forest

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:EMBL - EBI & Wellcome Trust Sanger Institute

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: Norway rat

characteristic: common name

text: Protocols: Cells were sorted with Beckman Coulter MoFlo XDP into wells containing 2uL of Lysis Buffer (1:20 solution of RNase Inhibitor (Clontech, Cat Number 2313A) in 0.2% v/v Triton X-100 (Sigma-Aldrich, Cat Number T9284), spun down and immediately frozen at -80°. Human dermal fibroblasts were obtained from the HipSci consortium (http://www.hipsci.org/ (Streeter et al., 2017) (where they were used for creating iPSCs). These original cells were thawed to test for growth and viability and refrozen after 1-2 passages, so that all lines were in the same growth rate and proliferation conditions before the stimulation experiment. Non-human primate cells were extracted from skin tissues that were incubated for 2hrs with 0.5% collagense-A (Roche; 11088815001) after mechanical processing, and then filtered through 100m strainers before being plated and passaged prior to cryo-banking. Rodent cells were obtained from Cellbiologics where they were extracted using a similar enzymatic extraction protocol using skin tissues from the same regions of the body used in primates. Cell were grown in ATCC fibroblast growth medium (Fibroblast Basal Medium (ATCC, ATCC-PCS-201-030) with Fibroblast Growth Kit-Low serum (ATCC, PCS-201-041) Cells were stimulated with 1ug/mL of High-Molecular Weight poly I:C (Invivogen, Cat. Code: tlrl-pic), transfected with 2uL/mL Lipofectamin 2,000 , for 0,4,8 hours. Sorted plates were processed according to the Smart-seq2 protocol (Picelli et al., 2014): Oligo-dT primer (IDT), dNTPs (ThermoFisher, Cat Number 10319879) and ERCC RNA Spike-In Mix (1:25,000,000 final dilution, Ambion, Cat Number 4456740) were added to each well, and Reverse Transcription (using 50U SmartScribe, Clontech Cat Number 639538) and PCR were performed following the original protocol with 25 PCR cycles. cDNA libraries were prepared using Nextera XT DNA Sample Preparation Kit (Illumina, Cat Number FC-131-1096), according to the protocol supplied by Fluidigm (PN 100-5950 B1). Quality Checks on cDNA were done using a Bioanalyser 2100 (Agilent Technologies). Libraries from 96 single cells were quantified using the LightCycler 480 (Roche), pooled and purified using AMPure XP beads (Beckman Coulter) with Hamilton 384 head robot (Hamilton Robotics). Pooled samples were sequenced on an Illumina HiSeq 2500 instrument, using paired-end 125-bp reads.

characteristic: description

text: normal

characteristic: disease

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: dermis

characteristic: organism part

text: Rattus norvegicus

text: female

characteristic: sex

text: BN

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: EMBL - EBI & Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: Norway rat

text: normal

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: dermis

text: Rattus norvegicus

text: female

text: BN


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: fibroblast

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: dermis

text: Homo sapiens

text: female

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: fibroblast derived cell line

characteristic: cell line

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: ArrayExpress

text: fibroblast derived cell line

text: fibroblast

text: Rhesus monkey

text: normal

characteristic: individual

text: Macaca mulatta

text: Macaca mulatta

text: dermis

characteristic: organism part

text: Macaca mulatta

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

text: STANFORD UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:STANFORD UNIVERSITY

text: human

text: Morocco (Rabat-Salé-Kénitra, Khemiset)

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Early Neolithic sample from Ifri n’Amr o’Moussa site (6290 ± 40 BP)


characteristic: ENA-LAST-UPDATE

text: STANFORD UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Morocco (Rabat-Salé-Kénitra, Khemiset)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from Ifri n’Amr o’Moussa site (6160 ± 30 BP)

characteristic: title


text: STANFORD UNIVERSITY

text: public

text: human

characteristic: common name

text: Morocco (Rabat-Salé-Kénitra, Khemiset)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from Ifri n’Amr o’Moussa site (6100 ± 30 BP)


characteristic: ENA-CHECKLIST

text: STANFORD UNIVERSITY

text: public

text: human

text: Morocco (Rabat-Salé-Kénitra, Khemiset)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from Ifri n’Amr o’Moussa site (6210 ± 30 BP)


characteristic: External Id

text: STANFORD UNIVERSITY

text: public

text: human

text: Morocco (Rabat-Salé-Kénitra, Khemiset)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from Ifri n’Amr o’Moussa site (6030 ± 30 BP)


text: STANFORD UNIVERSITY

text: public

text: human

text: Morocco (Casablanca-Settat, Casablanca)

text: Homo sapiens

text: Homo sapiens

text: Late Neolithic sample from Kehf el Baroud site (4940 ± 30 BP)


text: STANFORD UNIVERSITY

text: public

text: human

text: Spain (Málaga, Antequera)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from El Toro site (6090 ± 110 BP)


text: STANFORD UNIVERSITY

text: public

text: human

text: Spain (Málaga, Antequera)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from El Toro site (6050 ± 30 BP)


text: STANFORD UNIVERSITY

text: public

text: human

text: Spain (Málaga, Benalmádena)

text: Homo sapiens

text: Homo sapiens

text: Early Neolithic sample from Los Botijos cave


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: ITB-CNR

text: public

text: durum wheat

text: Durum Wheat (cv. Svevo)

characteristic: description

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Svevo


characteristic: ENA-FIRST-PUBLIC

text: VTT

text: public

characteristic: collection date

text: uncultured fungus

text: groundwater

characteristic: environment (biome)

text: fracture fluid

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured fungus

characteristic: project name

text: uncultured fungus

text: Ion torrent PGM

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured bacterium

characteristic: common name

text: groundwater

text: fracture fluid

text: water

text: Finland

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Ion torrent PGM

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

text: VTT

text: public

characteristic: collection date

text: uncultured archaeon

text: groundwater

characteristic: environment (biome)

text: fracture fluid

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: uncultured archaeon

text: uncultured archaeon

text: Ion torrent PGM

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Trichomonas tenax NIH4 ATCC 30207 was isolated in 1959 at Bethesda (USA), from a patient presenting periodontal disease.This Bioprojet is related to the study Investigations on the relationship between Trichomonas tenax and the severity of the periodontitis

characteristic: description

text: Patient presenting periodontal diseases

characteristic: isolation source

text: Trichomonas tenax

text: Trichomonas tenax

text: NIH4 ATCC 30207

characteristic: strain

text: Trichomonas tenax NIH4 ATCC 30207 partial genome


characteristic: ENA-FIRST-PUBLIC

text: Viale Adriatico 1/n

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Viale Adriatico 1/n

characteristic: Submitter Id

text: European hake

characteristic: common name

text: Illumina Miseq reads of metabarcoding data obtained from stomach content

text: Yes

characteristic: environmental sample

text: Merluccius merluccius

characteristic: host scientific name

text: Merluccius merluccius

characteristic: organism

text: Merluccius merluccius

text: MMstomach content 2014

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Mississippi State University

text: public

tag: Namespace:Mississippi State University

text: ArrayExpress

characteristic: broker name

text: Protocols: Bacterial strains were cultured in vitro in Todd-Hewitt Yeast extract medium. Bacteria were harvested from mid-log phase cultures and total RNA was isolated using RNEasy kit (Qiagen) and quality assessed by Bioanalyzer. Illumina’s Ribozero Gold Epidemiology kit was used for Ribosomal RNA depletion. Library was prepared using KAPA Stranded RNA-Seq kit, QCed and pooled evenly at 2nM.

text: deletion

characteristic: genetic modification

text: speE

characteristic: genotype

text: Todd-Hewitt Yeast extract medium

characteristic: growth condition

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: replicate

text: Streptococcus pneumoniae


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Mississippi State University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Todd-Hewitt Yeast extract medium

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: strain