text: NTNU

text: public

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text: Control incubations at 13C-day0

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

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characteristic: project name

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characteristic: protocol label

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text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

text: marine metagenome

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

unit: m

text: Control incubations at 13C-day7

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text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

unit: practical salinity unit

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

characteristic: sampling site

text: marine metagenome

unit: ºC

characteristic: temperature


text: NTNU

text: public

characteristic: depth

text: Control incubations at 13C-day14

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

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characteristic: longitude start

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characteristic: marine region

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characteristic: project name

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characteristic: protocol label

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text: time series mesocosm experiment

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characteristic: sampling platform

text: Laboratory

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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characteristic: Longitude End

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text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

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text: Laboratory

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text: Marine biome

characteristic: environment (biome)

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characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

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characteristic: marine region

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text: time series mesocosm experiment

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text: Laboratory

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text: Laboratory

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characteristic: organism

text: PETROMAKS

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text: Laboratory

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text: Laboratory

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characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

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text: Troll oil incubation at 5C-day13

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text: marine metagenome

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characteristic: ENA-CHECKLIST

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characteristic: SRA accession

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text: Troll oil incubation at 5C-day16

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text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

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text: time series mesocosm experiment

text: Laboratory

text: Laboratory

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characteristic: environment (material)

text: water

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text: time series mesocosm experiment

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characteristic: ENA-CHECKLIST

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text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

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text: time series mesocosm experiment

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text: Laboratory

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text: PETROMAKS

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text: time series mesocosm experiment

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text: Laboratory

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characteristic: ENA-CHECKLIST

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text: Laboratory

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text: Grane oil incubation at 5C-day64

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text: Water

text: water

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text: PETROMAKS

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text: Laboratory

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text: water

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text: Laboratory

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text: Laboratory

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text: public

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characteristic: SRA accession

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text: Control incubations at 5C-day6

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text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

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characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

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text: NTNU

text: public

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text: Control incubations at 5C-day9

text: Marine biome

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text: Fjord

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text: Water

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text: water

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text: filtration and preservation

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text: time series mesocosm experiment

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text: Laboratory

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text: Laboratory

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characteristic: ENA-CHECKLIST

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text: NTNU

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characteristic: Longitude End

characteristic: SRA accession

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text: Control incubations at 5C-day13

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text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

characteristic: sampling site

text: marine metagenome


text: NTNU

text: public

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text: Control incubations at 5C-day16

text: Marine biome

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text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

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characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

text: marine metagenome

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NTNU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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characteristic: Longitude End

characteristic: SRA accession

characteristic: Submitter Id

text: Control incubations at 5C-day30

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

characteristic: organism

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: title


text: NTNU

text: public

characteristic: depth

text: Control incubations at 5C-day64

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: North sea

characteristic: marine region

text: marine metagenome

text: PETROMAKS

characteristic: project name

text: filtration and preservation

characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

characteristic: sampling site

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF GLASGOW

characteristic: Submitter Id

characteristic: collection date

text: Germany

characteristic: geographic location (country and/or sea)

text: DSMZ

characteristic: host scientific name

characteristic: isolate

text: Pure culture

characteristic: isolation source

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

characteristic: strain

text: NanoAmpli-Seq: A de novo protocol for amplicon sequencing from mixed microbial communities on the nanopore sequencing platform.


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF VIENNA

text: public

tag: Namespace:UNIVERSITY OF VIENNA

text: Candidatus Nitrosocaldus cavascurensis

characteristic: common name

text: Nitrosocaldus cavascurensis genome

characteristic: description

text: Italy

text: Ischia, Terme di Cavascura

characteristic: geographic location (region and locality)

text: terrestrial hot spring

text: Candidatus Nitrosocaldus cavascurensis

text: Candidatus Nitrosocaldus cavascurensis

text: Nitrosocaldus cavascurensis genome

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id


text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The mice were culled by terminal anaesthesia with isoflurane followed by cardiac puncture. The death was confirmed by cervical dislocation. Tissues were cut into small pieces (less than 5 mm in thickness) and submerged in RNAlater (Sigma-Aldrich) for storage at -20C. After removing RNAlater by clean Kimtech (Kimberly-Clark), around 30 mg of tissue was homogenised in 1 ml TRIsure (Bioline), using TissueLyser LT (Qiagen) and 7 mm Stainless Steel Beads (Qiagen). RNA extraction was performed following the manufacturer’s instruction with minor modifications: the isopropanol precipitation step was done with the addition of 20 ug/ml glycogen and 0.1 mM DTT and the isopropanol precipitation at -20C was extended to 2 hr. Purified RNA was subsequently treated with 1 U of TURBO DNase (Invitrogen) to eliminate potential DNA contamination. After the DNase reaction, RNA was cleaned up by RNA Clean & Concentrator-5 (Zymo Research) and stored at -80C with 1 mM DTT in order to prevent oxidisation. DNase-treated RNA was reacted with IAA to alkylate the thiol group following the protocol previously described. Briefly, 50 µl reaction mix (5-10 µg RNA, 10 mM IAA, 50 mM pH8 sodium phosphate, and 50% DMSO) was incubated at 50C for 15 min. The reaction was stopped by adding 1 µl of 1M DTT, followed by 1 µl glycogen (20 mg/ml), 5 µl NaOAc (3M, pH 5.2), and 125 µl 100% EtOH addition. After 2 hr incubation at -20C, the solution was centrifuged and the obtained RNA pellet was washed with 80% ethanol. The pellet was resuspended in 15 ul nuclease-free water. RNA concentration was quantified by Qubit RNA BR Assay Kit (Molecular probes) and 500 ng of it was used as an input for QuantSeq 3′ mRNA-Seq Library Prep Kit for Illumina (Lexogen). RNA-seq library preparation was conducted following manufacturer’s instructions with the PCR cycles optimised for different tissues (brain: 13, duodenum: 15, eWAT: 15).

text: uprt/0; +/+

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: epididymal white adipose tissue

characteristic: organism part

text: wild type

characteristic: phenotype

text: Mus musculus

characteristic: stimulus


characteristic: ENA-CHECKLIST

text: University of Cambridge

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: uprt/0; +/+

text: Mus musculus

text: Mus musculus

text: brain

text: wild type

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cambridge

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: uprt/0; +/+

text: Mus musculus

text: Mus musculus

text: duodenum

text: wild type

text: Mus musculus


text: University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: uprt/0; Adipoq-Cre/0

text: Mus musculus

text: Mus musculus

text: epididymal white adipose tissue

text: UPRT expression in Adipoq positive cells

text: Mus musculus


text: University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: uprt/0; Tie2-Cre/0

text: Mus musculus

text: Mus musculus

text: brain

text: UPRT expression in Tie2 positive cells

text: Mus musculus


text: University of Cambridge

text: public

text: ArrayExpress

text: house mouse

text: uprt/0; Vil-Cre/0

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: duodenum

characteristic: organism part

text: UPRT expression in Villin positive cells

text: Mus musculus


characteristic: ENA-CHECKLIST

text: UOM

text: public

text: ArrayExpress

text: house mouse

text: Protocols: Two male (age 2-3 months) wild type C57/BL mouse lungs were collected at ZT5 and frozen in -80C. Nuclei were first extracted according to method published before (Bergmann et al., 2011). Material was crosslinked with standard 1% PFA for 10 mins. Bergmann O, et al. Identification of cardiomyocyte nuclei and assessment of ploidy for the analysis of cell turnover. Exp Cell Res. 2011, 317:188-94. doi: 10.1016/j.yexcr.2010.08.017. PubMed PMID: 20828558. After incubation with Dynabeads Protein G (10003D, ThermoFisher Scientific, Paisley, UK), DNA was purified with MinElute PCR Purification Kit (28004, Qigen, Valencia, California, the United States). The chromatin was sheared into 200-500bp sizes by probe sonification (53052, Active Motif, La Hulpe, Belgium). Fragmented chromatin was incubated with 2ug BMAL1 antibody (D2L7G, Rabbit mAb #14020, Cell Signalling Technology, Boston, MA, the United States) overnight.

text: adult

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Zeitgeber time 5

characteristic: sampling time point

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: ChIP


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UOM

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Zeitgeber time 5

text: Mus musculus

text: male

text: Input

characteristic: title


text: gut metagenome

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: gut metagenome

text: gut metagenome

text: gut metagenome

characteristic: subject id


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

tag: Namespace:King Faisal Specialist Hospital & Research Centre

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: DTU CGE

text: public

tag: Namespace:DTU CGE

text: DTU-GE

characteristic: broker name

characteristic: collection date

text: F corresponds to Farm number; S corresponds to sample number

text: pig

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text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: title


text: NTNU

text: public

text: Svalbard seawater-oil incubation-day42

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: Arctic Ocean

characteristic: marine region

text: marine metagenome

characteristic: organism

text: PETROMAKS

characteristic: project name

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characteristic: protocol label

characteristic: salinity

text: time series mesocosm experiment

characteristic: sampling campaign

text: Laboratory

characteristic: sampling platform

text: Laboratory

characteristic: sampling site

text: marine metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC last update

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characteristic: SRA accession

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text: Svalbard seawater-oil incubation-day64

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: Arctic Ocean

text: marine metagenome

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: temperature


text: NTNU

text: public

text: Svalbard seawater-control-day0

text: Marine biome

characteristic: environment (biome)

text: Fjord

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: Arctic Ocean

characteristic: marine region

text: marine metagenome

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characteristic: project name

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characteristic: protocol label

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text: time series mesocosm experiment

characteristic: sampling campaign

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characteristic: sampling platform

text: Laboratory

text: marine metagenome

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characteristic: ENA-CHECKLIST

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text: Svalbard seawater-control-day7

characteristic: description

text: Marine biome

text: Fjord

text: Water

text: water

text: Arctic Ocean

text: marine metagenome

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

characteristic: sampling site

text: marine metagenome


text: NTNU

text: public

text: Svalbard seawater-control-day14

text: Marine biome

characteristic: environment (biome)

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characteristic: environment (feature)

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characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

characteristic: longitude start

text: Arctic Ocean

characteristic: marine region

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text: time series mesocosm experiment

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text: Svalbard seawater-control-day21

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text: marine metagenome

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text: filtration and preservation

text: time series mesocosm experiment

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characteristic: sampling platform

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text: water

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text: marine metagenome

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

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characteristic: temperature


text: NTNU

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text: Trondheimsfjord seawater-oil incubation-day0

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characteristic: environment (material)

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text: North sea

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text: Trondheimsfjord seawater-oil incubation-day7

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text: Marine biome

text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

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characteristic: sampling site

text: marine metagenome


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characteristic: environment (biome)

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characteristic: environment (feature)

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characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

characteristic: latitude start

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characteristic: marine region

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characteristic: protocol label

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characteristic: sampling campaign

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characteristic: sampling platform

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text: Fjord

text: Water

text: water

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text: marine metagenome

text: PETROMAKS

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text: time series mesocosm experiment

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text: Laboratory

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characteristic: title


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text: Trondheimsfjord seawater-oil incubation-day28

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characteristic: environment (biome)

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characteristic: environment (feature)

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characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time

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text: North sea

characteristic: marine region

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characteristic: sampling platform

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text: Trondheimsfjord seawater-oil incubation-day42

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text: Fjord

text: Water

text: water

text: North sea

text: marine metagenome

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

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characteristic: temperature


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text: Trondheimsfjord seawater-oil incubation-day64

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characteristic: environment (biome)

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text: Fjord

text: Water

text: water

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text: marine metagenome

text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

characteristic: sampling site

text: marine metagenome


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text: public

text: Trondheimsfjord seawater-control-day7

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text: marine metagenome


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text: Fjord

text: Water

text: water

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text: PETROMAKS

text: filtration and preservation

text: time series mesocosm experiment

text: Laboratory

text: Laboratory

text: marine metagenome

characteristic: temperature


text: NTNU

text: public

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characteristic: environment (biome)

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characteristic: environment (feature)

text: Water

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text: water

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characteristic: latitude start

characteristic: longitude start

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text: Laboratory

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Liverpool

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Liverpool

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: 250 ml flasks containing 50 ml THB were inoculated with 2ml overnight diluted to OD600 0.5. Flasks were incubated at 37 C 250 RPM (linear) until bacteria had reached OD600 0.5. Squalene was added to treated samples to a final concentration of 1 %. Cells were Harvested after 20 minutes treatment and resuspended in RNA later Extraction protocol described in Moran et al, 2017. Basically, enzymatic digest of cells, extraction using RNeasy columns (Qiagen), DNase treatment and then cleanup using RNA Minelute (Qiagen) epicentre ScriptSeq v2 strand specific

characteristic: description

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: replicate

text: Staphylococcus aureus

text: Newman

characteristic: strain


text: University of Liverpool

text: public

text: ArrayExpress

text: Staphylococcus epidermidis

characteristic: organism

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis


text: Universidad de Costa Rica

text: public

tag: Namespace:Universidad de Costa Rica

characteristic: collection date

text: Soil-based pesticide-degrading biomixture

text: Agricultural farm

characteristic: environment (biome)

text: onion field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Costa Rica

characteristic: geographic location (country and/or sea)

text: 9° 55′ 34.17″ N

characteristic: geographic location (latitude)

text: 83° 53′ 11.76″ W

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: bacterium

text: Impact of Bioaugmentation and the use of antimicrobial compounds on a pesticide biopurification system for carbofuran degradation

characteristic: project name

text: bacterium

text: Illumina paired-end

characteristic: sequencing method

text: Biomixture


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universidad de Costa Rica

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Soil-based pesticide-degrading biomixture bioaugmented with a carbofuran-degrading bacterial consortium

text: Agricultural farm

text: onion field

text: soil

text: Costa Rica

text: 9° 55′ 34.17″ N

text: 83° 53′ 11.76″ W

text: metagenome

text: bacterium

text: bacterium

text: Illumina paired-end

text: Biomixture

characteristic: title


text: UCSDMI

text: public

characteristic: altitude

characteristic: anonymized name

text: USA

characteristic: country

characteristic: depth

characteristic: description

text: TRUE

characteristic: elevation

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: TRUE

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: TRUE

characteristic: public

text: metagenome

text: American Gut Project


Atrophaneura dixoni 2008

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MONTPELLIER 2

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Atrophaneura dixoni 2008

tag: Namespace:UNIVERSITY OF MONTPELLIER 2

characteristic: Submitter Id

characteristic: collection date

text: Indonesia

characteristic: geographic location (country and/or sea)

text: Pakuli, Nord Sulawesi Islands

characteristic: geographic location (region and locality)

text: mitochondrion

characteristic: organelle

text: Atrophaneura dixoni

text: Atrophaneura dixoni

text: Atrophaneura dixoni 2008


text: NCGR

text: public

text: rice

characteristic: common name

text: Oryza sativa

text: Oryza sativa

characteristic: title


text: public

tag: Namespace:Klinikum rechts der Isar, II. Medizinische Klinik

text: Epithelial/mesenchymal pairs of CRISPR/Cas9-edited, KrasG12D-driven mouse primary pancreatic cancer cell cultures

characteristic: cell line

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: C57Bl/6;129S6/SvEv mixed background

characteristic: strain

text: primary pancreatic tumor

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:South African Sugarcane Research Institute

text: Shailesh Vinay Joshi, South African Sugarcane Research Institute

characteristic: collected by

text: Coimbatore

characteristic: cultivar

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Coimbatore was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

characteristic: description

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

characteristic: identified by

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Coimbatore


text: South African Sugarcane Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar IK76-86 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

characteristic: geographic location (country and/or sea)

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar IK76-86


text: public

text: Assembly of the complete chloroplast or Saccharum spontaneum cultivar SES196 from Illumina reads. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: Saccharum spontaneum

characteristic: organism

text: Saccharum spontaneum

text: leaf

characteristic: tissue type

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar IND81-14

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: IND 81-007

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar IND 81-007 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

characteristic: geographic location (region and locality)

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Coimbatore IND 81-007


characteristic: External Id

text: public

characteristic: collected by

text: Kepandjen

characteristic: cultivar

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Kepandjen was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

characteristic: description

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Kepandjen


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Nigeria 2

text: Using 12 novel PCR primers, the complete sequence of Saccharum spontaneum cultivar Nigeria 2 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

characteristic: identified by

text: Saccharum spontaneum

text: Saccharum spontaneum

text: leaf

text: Chloroplast isolation, sequencing and assembly of Saccharum spontaneum cultivar Nigeria 2


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Using 12 novel PCR primers, the complete sequence of Tripidium sp. NG77-188 was sequenced with the Illumina platform. Reads were assembled with SPAdes and polished with Pilon prior to annotation with a novel pipeline based on Verdant.

text: South Africa

text: KwaZulu-Natal, Mount Edgecombe

text: Dyfed Lloyd Evans

text: Tripidium sp. NG77-188

text: Tripidium sp. NG77-188

text: leaf

text: Chloroplast isolation, sequencing and assembly of Tripidium sp. NG77-188


text: WAGENINGEN UNIVERSITY

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: Rumen fluid

text: ruminant

characteristic: environment (biome)

text: dairy cow

characteristic: environment (feature)

text: rumen fluid

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: gut metagenome

characteristic: organism

text: 27F DegS-338R[I&II]

characteristic: pcr primers

text: gut metagenome

characteristic: target gene

characteristic: target subfragment

text: Rumen Bacterial profiling

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: no

characteristic: description

text: TRUE

characteristic: elev

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CO:Boulder

characteristic: geo loc name

characteristic: host subject id

text: mimarks-survey

characteristic: investigation type

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: FALSE

text: Effects of preservation and storage conditions on the fecal microbiome

characteristic: project name

text: TRUE

characteristic: public

text: control blank

characteristic: sample type

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CO:Boulder

text: mimarks-survey

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: TRUE

text: control blank

text: metagenome

characteristic: title


text: Technische Universitat Munchen - WZW

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: Ramularia collo-cygni

characteristic: common name

text: Switzerland 775 - 1

characteristic: description

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Czech.Rep. 52/09 - 4

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Q2-3 - 1

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Pol 12 - 1

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Olga 1 - 1

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Ung. B - 3

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: NZ 001 - 2

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Arg.1 - 3

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Scotland 007 3 - 2

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Denmark - 4

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: France - 2

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: England west sussex - 3

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Norway 2013 1 - 3

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Asano 1 - 3

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: different geographically location


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Trit 2 - 1

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: isolated from wheat


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Hafer 2 - 4

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: isolated from oat


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Agropyron 779 - 2

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: isolated from agropyron


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: poae 451 - 4

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: isolated from poae


text: Technische Universitat Munchen - WZW

text: public

text: Ramularia collo-cygni

text: Lolium 442 - 4

text: Ramularia collo-cygni

text: Ramularia collo-cygni

text: isolated from lolium


text: WAGENINGEN UNIVERSITY

text: public

text: Rumen fluid

text: gut metagenome

text: gut metagenome

text: Rumen Archaeal profiling


status: KILLED

text: IMPERIAL COLLEGE LONDON

text: killed

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: age

characteristic: bmi

text: human

text: Male

characteristic: gender

text: Homo sapiens

text: non-diabetic

characteristic: phenotype

text: Homo sapiens

text: Whole human pancreatic islet samples


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IMPERIAL COLLEGE LONDON

text: killed

text: human

text: Female

text: Homo sapiens

text: non-diabetic

text: Homo sapiens

text: Whole human pancreatic islet samples


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

tag: Namespace:LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: African malaria mosquito

text: Pooled genomic DNA from 40 adult female mosquitoes derived from Cameroon, dead after 20 minutes’ exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, permethrin-susceptible


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: African malaria mosquito

text: Pooled genomic DNA from 40 adult female mosquitoes derived from Cameroon, alive after 60 minutes’ exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus, permethrin-resistant


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: African malaria mosquito

text: Pooled genomic DNA from 44 adult female mosquitoes derived from Malawi, dead after 60 minutes’ exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-susceptible (replicate 1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 43 adult female mosquitoes derived from Malawi, dead after 60 minutes’ exposure to permethrin

text: Anopheles funestus

characteristic: organism

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-susceptible (replicate 2)

characteristic: title


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 36 adult female mosquitoes derived from Malawi, alive after 180 minutes’ exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-resistant (replicate 1)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

characteristic: common name

characteristic: description

text: Anopheles funestus

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-resistant (replicate 2)


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 37 adult female mosquitoes derived from Malawi, alive after 180 minutes’ exposure to permethrin

text: Anopheles funestus

text: Anopheles funestus

text: Malawian Anopheles funestus, permethrin-resistant (replicate 3)


text: cerebral right

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: cerebral right

text: Mus musculus

characteristic: subject id


text: cerebral left

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: cerebral left

characteristic: phenotype

text: Mus musculus


text: Adult

text: Fibrosis

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Fibrosis

text: Mus musculus


text: Adult

text: Healthy

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Male

text: Mus musculus

text: Healthy

text: Mus musculus


text: UNIVERSITY OF OXFORD

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF OXFORD

characteristic: Submitter Id

text: polymicrobial metagenomic

text: bacterium

characteristic: organism

text: bacterium

characteristic: title


characteristic: INSDC last update

text: public

tag: Namespace:Leibniz Institute for Farm Animal Biology (FBN)

text: cattle

characteristic: common name

text: Bos taurus

text: Bos taurus

text: male

characteristic: sex

text: Holstein

characteristic: strain

text: Jejunum mucosa

characteristic: tissue type

text: FBN-MAT


tag: attribute

characteristic: ENA-CHECKLIST

text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 40 adult female mosquitoes derived from Ghana

characteristic: description

text: Anopheles funestus

text: Anopheles funestus

text: Ghanaian Anopheles funestus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 40 adult female mosquitoes derived from Benin

text: Anopheles funestus

text: Anopheles funestus

text: Beninese Anopheles funestus


characteristic: External Id

text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 40 adult female mosquitoes derived from Cameroon

text: Anopheles funestus

text: Anopheles funestus

text: Cameroonian Anopheles funestus


text: LIVERPOOL SCHOOL OF TROPICAL MEDICINE

characteristic: INSDC center name

text: public

text: African malaria mosquito

text: Pooled genomic DNA from 40 adult female mosquitoes derived from Uganda

text: Anopheles funestus

text: Anopheles funestus

text: Ugandan Anopheles funestus


text: public

characteristic: INSDC status

tag: Namespace:German Centre for Integrative Biodiversity Research (iDiv)

text: green lizard

text: Hungary

characteristic: geographic location (country and/or sea)

text: Tokaj

characteristic: geographic location (region and locality)

text: Lacerta viridis

text: Lacerta viridis

text: Female

text: L. viridis PacBio genome reads


text: Leibniz Institute for Farm Animal Biology (FBN)

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

text: Bos taurus

text: Bos taurus

text: male

text: Holstein

text: Jejunum mucosa

text: FBN-MAT


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

text: No bleeding or flare; two weeks after antibiotics

characteristic: clinical signs

characteristic: collection date

text: stool sample JS.1.14.2015

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:La Jolla

characteristic: geo loc name

characteristic: height

text: centimeters

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Missing: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Missing: Not provided

text: human gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

characteristic: prep

text: TRUE

characteristic: public

text: feces

characteristic: sample type

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: female

characteristic: title

text: IBD time series

characteristic: weight

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: Missing: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Missing: Not provided

text: Explosive diarrhea; before antibiotics

characteristic: clinical signs

characteristic: collection date

text: stool sample JS.12.31.2014

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

text: feces

text: USA:CA:La Jolla

text: centimeters

text: human

text: Homo sapiens

text: Missing: Not provided

text: adult

text: Missing: Not provided

text: human gut metagenome

text: UCSDMI

text: TRUE

text: TRUE

text: feces

text: human gut metagenome

text: Missing: Not provided

text: Missing: Not provided

text: female

characteristic: sex

text: IBD time series

text: kg