E-MTAB-5937:Sample 13

text: public

text: E-MTAB-5937:Sample 13

tag: Namespace:Department of Basic Sciences and Aquatic Medicine, Faculty of Veterinary Medicine, Norwegian University of Life Sciences

characteristic: Submitter Id

unit: year

characteristic: age

text: Norwegian Red

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: cattle

characteristic: common name

text: Protocols: Six healthy Norwegian Red cows at the age of 4-7 years were used, blood samples of 500 ml were collected from the neck of each animal in sterile glass bottles with sodium citrate as an anticoagulant. Peripheral blood mononuclear cells (PBMC) were extracted by density gradient centrifugation (2210 × g, 30 min) on lymphoprep (Axis-Shield, Norway). CD14+ cells were extracted by positive selection of monocyte differentiation antigen CD14 using anti-human CD14 MACS MicroBeads (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany), according to the manufacturer’s instructions. CD14+ cells were grown in 6-well dishes at a density of 1.5 × 106 cells per well in RPMI medium supplemented with 10% FCS (Invitrogen, Carlsbad, USA). Cells were left over night at 37°C in an atmosphere with 5% CO2. The phenotypic morphology of cells, i.e. differentiation of monocytes into an early-stage adherent macrophage phenotype, was visualized and confirmed by phase contrast microscopy. For each individual animal the wells with macrophages were grouped into four classes with as equal number of wells and cells per class as possible. Two classes were infected with S. agalactiae strains ST103 and ST12, respectively, in a multiplicity of infection (MOI) of 1 (1 bacterium per cell, on average). The third cell class (positive control) was exposed to 1 mg/mL of lipopolysaccharides (LPS, rough strains) from Salmonella minnesota Re 595 (Re mutant, Sigma-Aldrich) and the last class was left uninfected (negative control). After 1 h of exposure, 1 % of penicillin/streptomycin (60 pg/mL penicillin and 100 µg/mL streptomycin) were added to prevent growth of remaining extracellular bacteria. The controls and the infected cells were treated equally. Inhibition of bacterial growth by antibiotics was verified by microscopy. Incubation was continued for one additional hour for LPS-exposed cells and for 5 more hours for bacteria infected and negative control cell classes, a total of 6 h incubation. Cells were centrifuged (400 × g, 5 min), pellet was washed with cold PBS buffer, snap frozen in liquid nitrogen and transferred to -70 oC for further storage. Mirvana Ambion kit NEBNext® Multiplex Small RNA Library Prep Set for Illumina®

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: blood

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 13


E-MTAB-5937:Sample 19

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Basic Sciences and Aquatic Medicine, Faculty of Veterinary Medicine, Norwegian University of Life Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5937:Sample 19

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 19

characteristic: title


E-MTAB-5937:Sample 2

text: public

text: E-MTAB-5937:Sample 2

characteristic: Submitter Id

characteristic: age

text: Norwegian Red

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: cattle

characteristic: common name

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 2


E-MTAB-5937:Sample 6

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5937:Sample 6

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: blood

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 6


E-MTAB-5937:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-5937:Sample 1

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 1


E-MTAB-5937:Sample 12

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5937:Sample 12

characteristic: Submitter Id

characteristic: age

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 12

characteristic: title


E-MTAB-5937:Sample 16

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5937:Sample 16

text: Norwegian Red

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: cattle

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 16


E-MTAB-5937:Sample 18

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5937:Sample 18

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: blood

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 18


E-MTAB-5937:Sample 5

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5937:Sample 5

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 5


E-MTAB-5937:Sample 9

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-5937:Sample 9

characteristic: Submitter Id

characteristic: age

text: Norwegian Red

characteristic: breed

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 9

characteristic: title


E-MTAB-5937:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5937:Sample 11

text: Norwegian Red

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: cattle

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 11


E-MTAB-5937:Sample 15

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5937:Sample 15

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: blood

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 15


E-MTAB-5937:Sample 20

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5937:Sample 20

characteristic: Submitter Id

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 20


E-MTAB-5937:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5937:Sample 4

characteristic: age

text: Norwegian Red

characteristic: breed

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 4

characteristic: title


E-MTAB-5937:Sample 8

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5937:Sample 8

text: Norwegian Red

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: cattle

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 8


E-MTAB-5937:Sample 10

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-5937:Sample 10

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: blood

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 10


E-MTAB-5937:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5937:Sample 14

characteristic: Submitter Id

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 14


E-MTAB-5937:Sample 17

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5937:Sample 17

characteristic: age

text: Norwegian Red

characteristic: breed

text: ArrayExpress

text: macrophage

text: cattle

text: normal

text: wild type genotype

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 17

characteristic: title


E-MTAB-5937:Sample 3

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-5937:Sample 3

text: Norwegian Red

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: cattle

characteristic: common name

characteristic: description

text: normal

text: wild type genotype

text: Bos taurus

text: Bos taurus

text: blood

text: Bos taurus

text: female

text: Sample 3


E-MTAB-5937:Sample 7

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-5937:Sample 7

text: Norwegian Red

text: ArrayExpress

text: macrophage

text: cattle

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Bos taurus

text: Bos taurus

text: blood

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: Sample 7


characteristic: External Id

text: TEAGASC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BONN, GERMANY

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF BONN, GERMANY

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


text: UNIVERSITY OF BONN, GERMANY

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Neutrophils_BM_TcellConditionedMedium_rep1


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BONN, GERMANY

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Neutrophils_BM_TcellConditionedMedium_rep2


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF BONN, GERMANY

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Neutrophils_BM_TcellConditionedMedium_rep3


text: UNIVERSITY OF BONN, GERMANY

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Neutrophils_BM_TcellConditionedMedium_rep4


text: UNIVERSITY OF BONN, GERMANY

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Neutrophils_TumorDraining_LymphNode_pool


text: BGI-SHENZHEN

text: public

characteristic: collection date

text: China

characteristic: geographic location (country and/or sea)

text: Nansha Guangzhou

characteristic: geographic location (region and locality)

text: Scylla paramamosain

characteristic: host scientific name

text: intestinal contents

characteristic: isolation source

text: Enterococcus faecalis

text: Enterococcus faecalis


characteristic: External Id

text: BGI-SHENZHEN

characteristic: INSDC center name

text: public

text: China

text: Nansha Guangzhou

text: Scylla paramamosain

text: intestinal contents

text: Streptococcus lutetiensis

text: Streptococcus lutetiensis


text: BGI-SHENZHEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: China

text: Nansha Guangzhou

text: Strombus gibberulus

text: intestinal contents

text: Enterococcus faecalis

text: Enterococcus faecalis


text: BGI-SHENZHEN

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: Nansha Guangzhou

text: Strombus gibberulus

text: intestinal contents

text: Lactococcus subsp. Lactis

text: Lactococcus subsp. Lactis


characteristic: ENA-CHECKLIST

text: BGI-SHENZHEN

characteristic: INSDC first public

text: public

text: China

text: Nansha Guangzhou

text: Strombus gibberulus

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Carassius carassius

text: intestinal contents

text: Lactococcus subsp. Lactis

characteristic: organism

text: Lactococcus subsp. Lactis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Ctenopharyngodon idella

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


characteristic: ENA-LAST-UPDATE

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Ctenopharyngodon idella

text: intestinal contents

text: Lactococcus lactis subsp. hordniae

text: Lactococcus lactis subsp. hordniae


text: BGI-SHENZHEN

text: public

characteristic: collection date

text: China

text: Nansha Guangzhou

text: Epinephelus lanceolatus

text: intestinal contents

text: Lactococcus subsp. Lactis

text: Lactococcus subsp. Lactis


text: BGI-SHENZHEN

text: public

text: China

characteristic: geographic location (country and/or sea)

text: Nansha Guangzhou

text: Epinephelus lanceolatus

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

characteristic: geographic location (region and locality)

text: Macrobrachium rosenbergii

text: intestinal contents

text: Enterococcus faecalis

text: Enterococcus faecalis


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Macrobrachium rosenbergii

characteristic: host scientific name

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Macrobrachium rosenbergii

text: intestinal contents

characteristic: isolation source

text: Lactococcus taiwanensis

text: Lactococcus taiwanensis


characteristic: External Id

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Mugil cephalus

text: intestinal contents

text: Enterococcus faecium

text: Enterococcus faecium


text: BGI-SHENZHEN

characteristic: INSDC center name

text: public

text: China

text: Nansha Guangzhou

text: Mugil cephalus

text: intestinal contents

text: Lactococcus subsp. Lactis

text: Lactococcus subsp. Lactis


text: BGI-SHENZHEN

characteristic: INSDC last update

text: public

text: China

text: Nansha Guangzhou

text: Parabramis pekinensis

text: intestinal contents

text: Enterococcus faecalis

text: Enterococcus faecalis


text: BGI-SHENZHEN

text: public

characteristic: INSDC status

text: China

text: Nansha Guangzhou

text: Parabramis pekinensis

text: intestinal contents

text: Lactococcus subsp. Lactis

text: Lactococcus subsp. Lactis


text: BGI-SHENZHEN

text: public

characteristic: SRA accession

text: China

text: Nansha Guangzhou

text: Parabramis pekinensis

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


text: BGI-SHENZHEN

text: public

characteristic: Submitter Id

text: China

text: Nansha Guangzhou

text: Parabramis pekinensis

text: intestinal contents

text: Pediococcus pentosaceus

text: Pediococcus pentosaceus


characteristic: ENA-CHECKLIST

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Paramisgurnus dabryanus

text: intestinal contents

text: Enterococcus hirae

text: Enterococcus hirae


text: BGI-SHENZHEN

characteristic: INSDC first public

text: public

text: China

text: Nansha Guangzhou

text: Paramisgurnus dabryanus

text: intestinal contents

text: Lactobacillus plantarum

text: Lactobacillus plantarum


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Paramisgurnus dabryanus

text: intestinal contents

text: Lactococcus garvieae

characteristic: organism

text: Lactococcus garvieae


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Litopenaeus vannamei

text: intestinal contents

text: Enterococcus faecalis

text: Enterococcus faecalis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Litopenaeus vannamei

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


characteristic: ENA-LAST-UPDATE

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

text: Lactococcus lactis subsp. hordniae

text: Lactococcus lactis subsp. hordniae


text: BGI-SHENZHEN

text: public

characteristic: collection date

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

text: Lactococcus lactis

text: Lactococcus lactis


text: BGI-SHENZHEN

text: public

text: China

characteristic: geographic location (country and/or sea)

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

text: Lactococcus sp. NBRC 106005

text: Lactococcus sp. NBRC 106005


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

characteristic: geographic location (region and locality)

text: Oreochromis mossambicus

text: intestinal contents

text: Lactococcus garvieae

text: Lactococcus garvieae


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

characteristic: host scientific name

text: intestinal contents

text: Enterococcus xiangfangensis

text: Enterococcus xiangfangensis


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

characteristic: isolation source

text: Enterococcus lactis

text: Enterococcus lactis


characteristic: External Id

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

text: Lactococcus formosensis

text: Lactococcus formosensis


text: BGI-SHENZHEN

characteristic: INSDC center name

text: public

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

text: Lactobacillus reuteri

text: Lactobacillus reuteri


text: BGI-SHENZHEN

characteristic: INSDC last update

text: public

text: China

text: Nansha Guangzhou

text: Oreochromis mossambicus

text: intestinal contents

text: Lactobacillus plantarum subsp. plantarum


text: BGI-SHENZHEN

text: public

characteristic: INSDC status

text: China

text: Nansha Guangzhou

text: Oxyeleotris marmorata

text: intestinal contents

text: Lactococcus subsp. Lactis

text: Lactococcus subsp. Lactis


text: BGI-SHENZHEN

text: public

characteristic: SRA accession

text: China

text: Nansha Guangzhou

text: Oxyeleotris marmorata

text: intestinal contents

text: Lactococcus lactis subsp. hordniae

text: Lactococcus lactis subsp. hordniae


text: BGI-SHENZHEN

text: public

characteristic: Submitter Id

text: China

text: Nansha Guangzhou

text: Oxyeleotris marmorata

text: intestinal contents

text: Lactococcus lactis subsp. Hordniae

text: Lactococcus lactis subsp. Hordniae


characteristic: ENA-CHECKLIST

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: Oxyeleotris marmorata

text: intestinal contents

text: Enterococcus lactis

text: Enterococcus lactis


text: BGI-SHENZHEN

characteristic: INSDC first public

text: public

text: China

text: Nansha Guangzhou

text: Oxyeleotris marmorata

text: intestinal contents

text: Enterococcus faecalis

text: Enterococcus faecalis


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: water and sediment

text: Lactobacillus plantarum

characteristic: organism

text: Lactobacillus plantarum


text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: water and sediment

text: Lactococcus subsp. Lactis

text: Lactococcus subsp. Lactis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: water and sediment

text: Enterococcus thailandicus

text: Enterococcus thailandicus


characteristic: ENA-LAST-UPDATE

text: BGI-SHENZHEN

text: public

text: China

text: Nansha Guangzhou

text: water and sediment

text: Lactococcus garvieae

text: Lactococcus garvieae


text: UNIVERSITY OF GLASGOW

text: public

tag: Namespace:UNIVERSITY OF GLASGOW

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

characteristic: sex

text: Female Ovary

characteristic: tissue lib

text: Ovary

characteristic: tissue type


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


characteristic: External Id

text: ISTANBUL UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:ISTANBUL UNIVERSITY

text: metagenome

text: metagenome


name: E-MTAB-5985:Pwp1 (-/+) anti-H4K20me3 ChIP

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Department of Bioinformatics,Tongji University

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: mES cells (E14.1) were cultured on plates coated with 0.1% gelatin (Millipore) in high-glucose Dulbecco’s modiﬁed Eagle’s medium (DMEM; HyClone) supplemented with 15% ES cell-qualiﬁed fetal bovine serum (Gibco), 1% penicillin and streptomycin (Gibco), 2 mM L-glutamine (Gibco), 0.1 mM non-essential amino acids (NEAAs; Gibco), 0.1 mM 2-mercaptoethanol (Gibco) and 1000 units/ml of LIF (Chemicon). Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared for sequencing using standard Illumina protocols at BGI-Shenzhen (sequencing service provider).

characteristic: description

text: embryo

characteristic: developmental stage

text: Pwp1 -/+

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Pwp1 (-/+) anti-H4K20me3 ChIP


E-MTAB-5985:Pwp1 (-/+) input

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Bioinformatics,Tongji University

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-5985:Pwp1 (-/+) input

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: embryo

text: Pwp1 -/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Pwp1 (-/+) input

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name: E-MTAB-5985:Pwp1 (-/+) OE Pwp1 anti-H4K20me3 ChIP

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text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: common name

text: embryo

text: Pwp1 -/+ and Pwp1 overexpression

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Pwp1 (-/+) OE Pwp1 anti-H4K20me3 ChIP


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text: embryonic stem cell

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text: Mus musculus

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text: Mus musculus

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text: embryo

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text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Wildtype anti-H4K20me3 ChIP


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text: public

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text: ArrayExpress

text: embryonic stem cell

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text: Mus musculus

text: Mus musculus

text: Mus musculus

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text: Mus musculus

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characteristic: ENA-FIRST-PUBLIC

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text: SC

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text: public

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text: Mus musculus

text: Mus musculus

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text: Mus musculus

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text: SC

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text: house mouse

text: Mus musculus

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text: Mus musculus

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text: Chlamydia trachomatis

text: SC

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text: public

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text: Chlamydia trachomatis

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text: Chlamydia trachomatis A/HAR-13

text: Chlamydia trachomatis A/HAR-13


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text: KMAHVH

text: public

characteristic: collection date

text: We report a ceftriaxone and multidrug resistant Neisseria gonorrhoeae, GK 124, acquired by a heterosexual man in Denmark in 2017. Following treatment failure with empiric azithromycin for urethritis N. gonorrhoeae was cultured. It belonged to NG-MAST genogroup 1624 and was MLST-1903. Whole genome sequencing identified a number of resistance genes and novel alterations found in the penA gene leading to pan-resistance. Treatment was however successful with ceftriaxone 0.5g i.m. and azithromycin 2g p.o.

characteristic: description

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Urethral swab

characteristic: isolate

text: Urethral swab from a young heterosexual male from Denmark

characteristic: isolation source

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: A ceftriaxone resistant Neisseria gonorrhoeae infection acquired in Denmark in 2017


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

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text: public

characteristic: SRA accession

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

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text: public

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tag: Namespace:School of Life Sciences, University of Dundee

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text: Protocols: A mixture of Dictyostelium discoideum cells was used, that had been developed from the slug to the culmination stages Cells were fixed with 1% formaldehyde, and DNA was extracted by sonication. The lysate was incubated in RET buffer (50 mM TRIS, pH 8.0, 150 mM NaCl, 0.1% (w/v) SDS, 1% (v/v) NP-40, 0.5% (w/v) sodium deoxycholate, 2 mM EDTA, 0.05% (v/v) Triton X-100 in 50 mM Tris, pH 8) containing cOmplete EDTA-free protease inhibitor cocktail with anti-GFP antibody and ProteinG-Dynabeads. Beads were washed with RET buffer, TTST buffer (150 mM NaCl, 1% Triton X100, 0.1% SDS, 2 mM EDTA, 0.05% Tween20 in 50 mM Tris-Cl, pH 8) and LiCl buffer (250 mM LiCl, 1% sodium deoxycholate, 1% NP40, 1 mM EDTA in 10 mM TRIS, pH 8), and eluted with 1% SDS and 1 mM EDTA in 50 mM Tris-Cl, pH 7.5. The eluate was reverse cross-linked, treated with RNase and proteinase K, and purified on a QIAquick column. DNA ends were repaired with Klenow polymerase and phosphorylated with T4 polynucleotide kinase. After addition of an A-overhang, pre-annealed adaptors were ligated, and DNA was amplified using Phusion DNA polymerase in the presence of 0.2 M trehalose. Fragments <800 bp were isolated by gel electrophoresis and purified using MinElute columns.

text: slug and culmination stages

characteristic: developmental stage

text: spda-/spdA-YFP

characteristic: genotype

text: Dictyostelium discoideum

characteristic: organism

text: Dictyostelium discoideum

text: Dictyostelium discoideum

characteristic: title


characteristic: ENA-CHECKLIST

text: School of Life Sciences, University of Dundee

text: public

text: ArrayExpress

characteristic: description

text: slug and culmination stages

text: spda-/spdA-YFP

text: Dictyostelium discoideum

text: Dictyostelium discoideum

text: Dictyostelium discoideum


characteristic: ENA-FIRST-PUBLIC

text: WTSI

text: public

text: Vibrio cholerae O1 biovar El Tor str. N16961

text: Vibrio cholerae O1 biovar eltor str N16961


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Centre for Integrative Physiology, University of Edinburgh

text: ArrayExpress

text: Protocols: Rat microglia: to prepare rat microglia, on experimental day 1 10-12 wild-type Sprague-Dawley rat pups (mixed gender) of postnatal day 0-2 were decapitated. Their cortices were then dissected under a microscope and dissociated first chemically with papain solution and then mechanically with 5 ml pipettes. The cell suspension was then plated down in DMEM medium in poly-D-lysine coated T75 plates and grown at 37°C for 10-14 days. Human astrocytes: On day 2, primary human astrocytes (purchased from Caltag Medsystems, catalogue no. SC1800, which had been isolated from the cerebral cortex, and were negative for HIV-1, HBV, HCV, mycoplasma, bacteria, yeast, and fungi) were recovered from liquid nitrogen, plated down in human astrocyte medium first in a T75 flask and then split into 24-well plates the next day. They were then left to grow for 1-3 days until 80-90% confluency. Mouse neurons: On day 4 or 5, wild type CD1 mouse embryos (mixed gender) of day 17.5 were decapitated and cortices were dissected and dissociated as above and 9-13 X 104 cells (in NBA medium with 1% serum) per well were plated down on top of the human astrocytes prepared earlier. The neuron-astrocyte co-culture was left to grow for a further 3-4 days. On day 11 or 12, the rat microglia were harvested by shaking in an orbital shaker and plated down in NBA medium without serum on top of either neurons, astrocytes, or the neuron-astrocyte co-culture and were left to grow for 3 days. After 3 days of co-culture, the medium was replaced with Tmo for two hours. 500 ng LPS was then added to the cells for 12-16 hours. RNA was harvested using a Roche RNA isolation Kit according to standard protocol and the quality of total RNA (RIN) was confirmed on RNA 6000 Nano Chips and an Agilent 2100 Bioanalyzer following the manufacturer’s instructions. RNA-seq libraries were prepared by Edinburgh Genomics using the Illumina TruSeq stranded mRNA-seq kit, according to the manufacturer’s protocol (Illumina).

text: co-culture between human astrocytes and rat microglia

characteristic: growth condition

text: mixed sample

text: mixed sample

text: mixed sample


characteristic: External Id

text: Centre for Integrative Physiology, University of Edinburgh

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text: public

text: ArrayExpress

text: co-culture between mouse neurons and rat microglia

text: mixed sample

text: mixed sample

text: mixed sample


text: public

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text: mixed sample

text: mixed sample

text: mixed sample


characteristic: INSDC center name

text: public

text: ArrayExpress

text: co-culture between mouse neurons and human astrocytes

text: mixed sample

text: mixed sample

text: mixed sample


characteristic: INSDC last update

text: public

text: ArrayExpress

text: tri-culture between mouse neurons, rat microglia and human astrocytes

text: mixed sample

text: mixed sample

text: mixed sample


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text: Mus musculus

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text: 1ROI 54

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 54


1ROI 55

text: TEAGASC

text: public

text: 1ROI 55

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 55


1ROI 56

text: TEAGASC

text: public

text: 1ROI 56

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 56


1ROI 57

text: TEAGASC

text: public

text: 1ROI 57

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 57


1ROI 58

text: TEAGASC

text: public

text: 1ROI 58

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 58


1ROI 59

text: TEAGASC

text: public

text: 1ROI 59

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 59


1ROI 60

text: TEAGASC

text: public

text: 1ROI 60

text: ileum

text: pig metagenome

text: pig metagenome

text: 1ROI 60


1ROI 61

text: TEAGASC

text: public

text: 1ROI 61

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 61


1ROI 62

text: TEAGASC

text: public

text: 1ROI 62

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 62


1ROI 63

text: TEAGASC

text: public

text: 1ROI 63

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 63


1ROI 64

text: TEAGASC

text: public

text: 1ROI 64

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 64


1ROI 65

text: TEAGASC

text: public

text: 1ROI 65

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 65


1ROI 66

text: TEAGASC

text: public

text: 1ROI 66

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 66


1ROI 67

text: TEAGASC

text: public

text: 1ROI 67

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 67


1ROI 68

text: TEAGASC

text: public

text: 1ROI 68

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 68


1ROI 69

text: TEAGASC

text: public

text: 1ROI 69

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 69


1ROI 70

text: TEAGASC

text: public

text: 1ROI 70

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 70


1ROI 71

text: TEAGASC

text: public

text: 1ROI 71

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 71


1ROI 72

text: TEAGASC

text: public

text: 1ROI 72

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 72


1ROI 73

text: TEAGASC

text: public

text: 1ROI 73

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 73


1ROI 74

text: TEAGASC

text: public

text: 1ROI 74

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 74


1ROI 75

text: TEAGASC

text: public

text: 1ROI 75

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 75


1ROI 76

text: TEAGASC

text: public

text: 1ROI 76

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 76


1ROI 77

text: TEAGASC

text: public

text: 1ROI 77

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 77


1ROI 78

text: TEAGASC

text: public

text: 1ROI 78

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 78


1ROI 79

text: TEAGASC

text: public

text: 1ROI 79

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 79


1ROI 80

text: TEAGASC

text: public

text: 1ROI 80

text: caecum

text: pig metagenome

text: pig metagenome

text: 1ROI 80


text: FEM

text: public

characteristic: collection date

text: Monthly water samples analyzed by Illumina MiSeq (16S rRNA)

text: water body

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenomes

text: 341F (5' CCTACGGGNGGCWGCAG 3'); 805Rmod (5' GACTACNVGGGTWTCTAATCC 3')

characteristic: pcr primers

text: Bacterial community in a large perialpine lake (Lake Garda)

characteristic: project name

text: metagenomes

text: Illumina MiSeq

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Fundacao Champalimaud

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Fundacao Champalimaud

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: Protocols: Zebrafish were isolated during pharyngula stage, and maintained until 8 dpf with daily changes of food and water 2 mM NaBu for 24 hours in specific samples ChIP protocol was performed as described in Roman et al. (Biorxiv 2017, doi: https://doi.org/10.1101/100230) using an anti-acetylH4 antibody from Millipore (#06-866). The chIP-seq libraries were built using the Truseq ChIP library preparation kit by Illumina (IP-202-1012) following manufacturer recommendations for Illumina GA II by the Genomics Unit of the Madrid Scientific Park.

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: Danio rerio

text: WIK

characteristic: strain

characteristic: title

type: has member


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LAUSANNE

text: public

tag: Namespace:UNIVERSITY OF LAUSANNE

characteristic: collection date

text: Sandy Soil from St. Sulpice with added Succinate as extra carbon source

characteristic: description

text: Soil

characteristic: environment (biome)

text: Sand

characteristic: environment (feature)

text: Sand

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: Pseudomonas veronii

text: Metatranscriptomic response of soil microbial communties

characteristic: project name

text: Pseudomonas veronii

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Metatranscriptomic of soil microbial communities


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sandy Soil from St. Sulpice with added toluene (vapor) as extra carbon source

text: Soil

text: Sand

text: Sand

text: Switzerland

text: metatranscriptome

text: Pseudomonas veronii

characteristic: organism

text: Pseudomonas veronii

text: Illumina

text: soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LAUSANNE

text: public

characteristic: collection date

text: Sandy Soil from St. Sulpice with added toluene (vapor) as extra carbon source and inoculated with a high cell density suspension of Pseudomonas veronii 1YdBTEX2

characteristic: description

text: Soil

characteristic: environment (biome)

text: Sand

characteristic: environment (feature)

text: Sand

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: Pseudomonas veronii

text: Pseudomonas veronii

text: Illumina

text: soil


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Silty like soil with added toluene (vapor) as extra carbon source

text: Soil

text: Soil

text: Soil

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: Pseudomonas veronii

characteristic: project name

text: Pseudomonas veronii

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Silty like soil with added toluene (vapor) as extra carbon source and inoculated with a high cell density suspension of Pseudomonas veronii 1YdBTEX2

characteristic: description

text: Soil

text: Soil

text: Soil

text: Switzerland

text: metatranscriptome

text: Pseudomonas veronii

characteristic: organism

text: Pseudomonas veronii

text: Illumina

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Clay like soil with added toluene (vapor) as extra carbon source

text: Soil

characteristic: environment (biome)

text: Soil

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: Pseudomonas veronii

text: Pseudomonas veronii

text: Illumina

text: soil


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Clay like soil with added toluene (vapor) as extra carbon source and inoculated with a high cell density suspension of Pseudomonas veronii 1YdBTEX2

text: Soil

text: Soil

text: Soil

text: Switzerland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: Pseudomonas veronii

characteristic: project name

text: Pseudomonas veronii

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Soil

text: Soil

text: Soil

text: Switzerland

text: metatranscriptome

text: Pseudomonas veronii

characteristic: organism

text: Pseudomonas veronii

text: Illumina

text: soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: School of Veterinary Medicine

characteristic: INSDC last update

text: public

tag: Namespace:School of Veterinary Medicine

text: cattle

characteristic: common name

text: Bos taurus

text: Bos taurus

text: Attenuation of M. tuberculosis in the bovine host

text: Limousin x Charolais

characteristic: variety


IMDO 130101

text: VRIJE UNIVERSITEIT BRUSSEL

text: public

characteristic: INSDC status

text: IMDO 130101

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: Belgium

characteristic: geographic location (country and/or sea)

text: sourdough

characteristic: isolation source

text: Lactobacillus fermentum

text: Lactobacillus fermentum

text: IMDO 130101

characteristic: strain

text: Lactobacillus fermentum IMDO 130101, complete genome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BGI

text: public

text: human gut

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: Lennart IgA Deficiency project

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: DNA extracted from healthy Swedish


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF LAUSANNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Soil

text: Sand

text: Sand

text: Switzerland

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metatranscriptome

text: Pseudomonas veronii

characteristic: organism

text: Pseudomonas veronii

text: Illumina

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Fundacao Champalimaud

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: Protocols: zebrafish were isolated during pharyngula stage, daily fed and water-changed until 8 dpf 2 mM NaBu for 24 hours in some samples Whole larvae where immersed in RNA later, and RNA was extracted using a Qiagen kit following manufacturer recommendations. RNA-seq libraries were built using the TruSeq RNA Library Preparation Kit v2 from Illumina (RS-122-2001)

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Danio rerio

text: Danio rerio

text: Danio rerio

text: AB

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ANAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: chicken

text: Ceacum microbiome

text: chicken gut

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: cecal content

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Gallus gallus

text: Pilot Study DBT-BBSRC

characteristic: project name

text: Gallus gallus

text: Illumina Miseq

characteristic: sequencing method


pmoA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institue of soil science

text: public

characteristic: INSDC status

text: pmoA

tag: Namespace:Institue of soil science

characteristic: collection date

text: paddy

text: paddy

text: paddy

text: China

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: methanotroph 'isolate 1'

characteristic: organism

text: pmoA

text: methanotroph 'isolate 1'

text: Illumina Miseq

text: soil

characteristic: soil environmental package

text: pmoA

characteristic: title


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: fruit fly

characteristic: common name

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

characteristic: sex

text: Female Hindgut

characteristic: tissue lib

text: Hindgut

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Tubule

text: Malpighian Tubules


text: UNIVERSITY OF GLASGOW

text: public

characteristic: INSDC status

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female whole flies


text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Female

text: Female whole flies


text: Institue of soil science

text: public

characteristic: collection date

text: paddy

characteristic: environment (biome)

text: paddy

characteristic: environment (feature)

text: paddy

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: methanotroph 'isolate 2'

characteristic: project name

text: methanotroph 'isolate 2'

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institue of soil science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: paddy

text: paddy

text: paddy

text: China

text: metagenome

text: methanotroph 'isolate 2'

text: CS

text: methanotroph 'isolate 2'

text: Illumina Miseq

text: soil

characteristic: title


characteristic: External Id

text: Institue of soil science

text: public

characteristic: INSDC status

characteristic: collection date

text: paddy

characteristic: environment (biome)

text: paddy

characteristic: environment (feature)

text: paddy

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: methanotroph 'isolate 2'

characteristic: organism

text: ZY

text: methanotroph 'isolate 2'

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institue of soil science

text: public

text: paddy

text: paddy

text: paddy

text: China

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: methanotroph 'isolate 2'

text: TY

characteristic: project name

text: methanotroph 'isolate 2'

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institue of soil science

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: paddy

text: paddy

text: paddy

text: China

text: metagenome

text: methanotroph 'isolate 2'

text: YT

text: methanotroph 'isolate 2'

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institue of soil science

text: public

characteristic: collection date

text: paddy

characteristic: environment (biome)

text: paddy

characteristic: environment (feature)

text: paddy

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: methanotroph 'isolate 2'

characteristic: organism

text: YX

text: methanotroph 'isolate 2'

text: Illumina Miseq

text: soil


text: Mycoplasma moatsii

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Mycoplasma moatsii

characteristic: common name

text: Mycoplasma moatsii

text: Mycoplasma moatsii

characteristic: subject id


text: Arcobacter cryaerophilus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Arcobacter cryaerophilus

text: Arcobacter cryaerophilus

text: Arcobacter cryaerophilus


text: Acholeplasma granularum

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: Acholeplasma granularum

text: Acholeplasma granularum

text: Acholeplasma granularum

characteristic: title


text: Acholeplasma equifetale

text: SC

text: public

text: Acholeplasma equifetale

text: Acholeplasma equifetale

text: Acholeplasma equifetale


text: Corynebacterium bovis

text: SC

text: public

text: Corynebacterium bovis

text: Corynebacterium bovis

text: Corynebacterium bovis


text: Chryseobacterium pallidum

text: SC

text: public

text: Chryseobacterium pallidum

text: Chryseobacterium pallidum

text: Chryseobacterium pallidum


text: Mycobacterium aurum

text: SC

text: public

text: Mycobacterium aurum

text: Mycobacterium aurum

text: Mycobacterium aurum


text: Peptoniphilus asaccharolyticus

text: SC

text: public

text: Peptoniphilus asaccharolyticus

text: Peptoniphilus asaccharolyticus

text: Peptoniphilus asaccharolyticus


text: Legionella genomosp. 1

text: SC

text: public

text: Legionella genomosp. 1

text: Legionella genomosp. 1

text: Legionella genomosp. 1


text: Anaerococcus octavius

text: SC

text: public

text: Anaerococcus octavius

text: Anaerococcus octavius

text: Anaerococcus octavius


text: Legionella quinlivanii

text: SC

text: public

text: Legionella quinlivanii

text: Legionella quinlivanii

text: Legionella quinlivanii


text: Mycoplasma subdolum

text: SC

text: public

text: Mycoplasma subdolum

text: Mycoplasma subdolum

text: Mycoplasma subdolum


text: Mycoplasma equirhinis

text: SC

text: public

text: Mycoplasma equirhinis

text: Mycoplasma equirhinis

text: Mycoplasma equirhinis


text: Mycoplasma faucium

text: SC

text: public

text: Mycoplasma faucium

text: Mycoplasma faucium

text: Mycoplasma faucium


text: Mycoplasma flocculare

text: SC

text: public

text: Mycoplasma flocculare

text: Mycoplasma flocculare

text: Mycoplasma flocculare


text: Mycoplasma verecundum

text: SC

text: public

text: Mycoplasma verecundum

text: Mycoplasma verecundum

text: Mycoplasma verecundum


text: Ureaplasma urealyticum

text: SC

text: public

text: Ureaplasma urealyticum

text: Ureaplasma urealyticum

text: Ureaplasma urealyticum


text: Mycoplasma iners

text: SC

text: public

text: Mycoplasma iners

text: Mycoplasma iners

text: Mycoplasma iners


text: Mycoplasma gallinarum

text: SC

text: public

text: Mycoplasma gallinarum

text: Mycoplasma gallinarum

text: Mycoplasma gallinarum


text: Institue of soil science

text: public

characteristic: collection date

text: paddy

characteristic: environment (biome)

text: paddy

characteristic: environment (feature)

text: paddy

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: methanotroph 'isolate 2'

characteristic: project name

text: methanotroph 'isolate 2'

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


PI 352492

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UOM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PI 352492

characteristic: description

text: Triticum ispahanicum

characteristic: organism

text: Triticum ispahanicum

text: PI 352492


CItr 17677

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UOM

text: public

text: CItr 17677

characteristic: Submitter Id

text: CItr 17677,

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: CItr 17677

characteristic: title


CItr 17678

text: UOM

text: public

text: CItr 17678

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: CItr 17678


PI 654340

text: UOM

text: public

text: PI 654340

text: 224, Possibly subsp. timopheevii

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 654340


PI 352264

text: UOM

text: public

text: PI 352264

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 352264


CItr 17680

text: UOM

text: public

text: CItr 17680

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: CItr 17680


PI 352265

text: UOM

text: public

text: PI 352265

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 352265


PI 427308

text: UOM

text: public

text: PI 427308

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 427308


PI 427347

text: UOM

text: public

text: PI 427347

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 427347


PI 427354

text: UOM

text: public

text: PI 427354

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 427354


PI 596290

text: UOM

text: public

text: PI 596290

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 596290


PI 560697

text: UOM

text: public

text: PI 560697

text: 158, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 560697


PI 560873

text: UOM

text: public

text: PI 560873

text: 160, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 560873


PI 560877

text: UOM

text: public

text: PI 560877

text: 161, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 560877


PI 656869

text: UOM

text: public

text: PI 656869

text: 185, Classified in SeedBank as dicoccoides (possibly subsp.timopheevii)

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 656869


PI 656871

text: UOM

text: public

text: PI 656871

text: 186, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 656871


PI 656872

text: UOM

text: public

text: PI 656872

text: 187, Classified in SeedBank as dicoccoides (possibly subsp.timopheevii)

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 656872


PI 656873

text: UOM

text: public

text: PI 656873

text: 188, Classified in SeedBank as dicoccoides (possibly subsp.timopheevii)

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: PI 656873


text: UOM

text: public

text: 201, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum


text: UOM

text: public

text: 204, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum


CGN 13161

text: UOM

text: public

text: CGN 13161

text: 210, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum

text: CGN 13161


text: UOM

text: public

text: CGN24296, Classified in SeedBank as dicoccoides

text: Triticum timopheevii subsp. armeniacum

text: Triticum timopheevii subsp. armeniacum


Citr 15590

text: UOM

text: public

text: Citr 15590

text: Citr 15590,

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: Citr 15590


PI 352510

text: UOM

text: public

text: PI 352510

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: PI 352510


PI 355705

text: UOM

text: public

text: PI 355705

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: PI 355705


PI 300991

text: UOM

text: public

text: PI 300991

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: PI 300991


PI 119442

text: UOM

text: public

text: PI 119442

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: PI 119442


PI 251018

text: UOM

text: public

text: PI 251018

text: PI 251018,

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: PI 251018


PI 572916

text: UOM

text: public

text: PI 572916

text: Triticum timpheevii subsp.timopheevii

text: Triticum timpheevii subsp.timopheevii

text: PI 572916


PI 470729

text: UOM

text: public

text: PI 470729

text: Triticum carthlicum

text: Triticum carthlicum

text: PI 470729


PI 94748

text: UOM

text: public

text: PI 94748

text: Triticum carthlicum

text: Triticum carthlicum

text: PI 94748


PI 283889

text: UOM

text: public

text: PI 283889

text: Triticum carthlicum

text: Triticum carthlicum

text: PI 283889


PI 427998

text: UOM

text: public

text: PI 427998

text: 226, Classified in SeedBank as armeniacum

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 427998


PI 428093

text: UOM

text: public

text: PI 428093

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428093


PI 428100

text: UOM

text: public

text: PI 428100

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428100


PI 428105

text: UOM

text: public

text: PI 428105

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428105


PI 428125

text: UOM

text: public

text: PI 428125

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428125


PI 428127

text: UOM

text: public

text: PI 428127

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428127


PI 428141

text: UOM

text: public

text: PI 428141

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428141


PI 428143

text: UOM

text: public

text: PI 428143

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428143


PI 428145

text: UOM

text: public

text: PI 428145

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428145


IG 109085

text: UOM

text: public

text: IG 109085

text: Triticum dicoccoides

text: Triticum dicoccoides

text: IG 109085


PI 466927

text: UOM

text: public

text: PI 466927

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 466927


PI 466981

text: UOM

text: public

text: PI 466981

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 466981


IG 113301

text: UOM

text: public

text: IG 113301

text: IG 113301,

text: Triticum dicoccoides

text: Triticum dicoccoides

text: IG 113301


IG 113302

text: UOM

text: public

text: IG 113302

text: IG 113302,

text: Triticum dicoccoides

text: Triticum dicoccoides

text: IG 113302


PI 466996

text: UOM

text: public

text: PI 466996

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 466996


PI 467004

text: UOM

text: public

text: PI 467004

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 467004


PI 470736

text: UOM

text: public

text: PI 470736

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 470736


PI 470978

text: UOM

text: public

text: PI 470978

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 470978


PI 470980

text: UOM

text: public

text: PI 470980

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 470980


PI 470988

text: UOM

text: public

text: PI 470988

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 470988


PI 471035

text: UOM

text: public

text: PI 471035

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 471035


PI 487251

text: UOM

text: public

text: PI 487251

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 487251


PI 487252

text: UOM

text: public

text: PI 487252

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 487252


PI 487253

text: UOM

text: public

text: PI 487253

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 487253


PI 487261

text: UOM

text: public

text: PI 487261

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 487261


PI 487263

text: UOM

text: public

text: PI 487263

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 487263


PI 487264

text: UOM

text: public

text: PI 487264

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 487264


PI 538680

text: UOM

text: public

text: PI 538680

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 538680


PI 538695

text: UOM

text: public

text: PI 538695

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 538695


PI 538699

text: UOM

text: public

text: PI 538699

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 538699


PI 538705

text: UOM

text: public

text: PI 538705

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 538705


PI 538719

text: UOM

text: public

text: PI 538719

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 538719


PI 554581

text: UOM

text: public

text: PI 554581

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 554581


PI 554582

text: UOM

text: public

text: PI 554582

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 554582


PI 554583

text: UOM

text: public

text: PI 554583

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 554583


PI 654311

text: UOM

text: public

text: PI 654311

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 654311


PI 654317

text: UOM

text: public

text: PI 654317

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 654317


PI 654318

text: UOM

text: public

text: PI 654318

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 654318


PI 654319

text: UOM

text: public

text: PI 654319

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 654319


PI 654334

text: UOM

text: public

text: PI 654334

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 654334


PI 654336

text: UOM

text: public

text: PI 654336

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 654336


PI 656866

text: UOM

text: public

text: PI 656866

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 656866


PI 656867

text: UOM

text: public

text: PI 656867

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 656867


PI 656868

text: UOM

text: public

text: PI 656868

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 656868


text: UOM

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides


IG 11508

text: UOM

text: public

text: IG 11508

text: Triticum dicoccoides

text: Triticum dicoccoides

text: IG 11508


IG 46483

text: UOM

text: public

text: IG 46483

text: Triticum dicoccoides

text: Triticum dicoccoides

text: IG 46483


PI 352322

text: UOM

text: public

text: PI 352322

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 352322


PI 355459

text: UOM

text: public

text: PI 355459

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 355459


PI 414718

text: UOM

text: public

text: PI 414718

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 414718


PI 414719

text: UOM

text: public

text: PI 414719

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 414719


PI 414721

text: UOM

text: public

text: PI 414721

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 414721


PI 414722

text: UOM

text: public

text: PI 414722

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 414722


PI 428013

text: UOM

text: public

text: PI 428013

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428013


PI 428014

text: UOM

text: public

text: PI 428014

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428014


PI 428015

text: UOM

text: public

text: PI 428015

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428015


PI 428016

text: UOM

text: public

text: PI 428016

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428016


PI 428017

text: UOM

text: public

text: PI 428017

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428017


PI 428053

text: UOM

text: public

text: PI 428053

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428053


PI 428069

text: UOM

text: public

text: PI 428069

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428069


PI 428077

text: UOM

text: public

text: PI 428077

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428077


PI 428085

text: UOM

text: public

text: PI 428085

text: Triticum dicoccoides

text: Triticum dicoccoides

text: PI 428085


PI 94670

text: UOM

text: public

text: PI 94670

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 94670


PI 94683

text: UOM

text: public

text: PI 94683

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 94683


PI 94747

text: UOM

text: public

text: PI 94747

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 94747


PI 532300

text: UOM

text: public

text: PI 532300

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 532300


PI 182743_2

text: UOM

text: public

text: PI 182743_2

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 182743


PI 194375

text: UOM

text: public

text: PI 194375

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 194375


PI 197481

text: UOM

text: public

text: PI 197481

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 197481


PI 254153

text: UOM

text: public

text: PI 254153

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 254153


text: UOM

text: public

text: Triticum dicoccon

text: Triticum dicoccon


PI 182743

text: UOM

text: public

text: PI 182743

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 182743


PI 470739

text: UOM

text: public

text: PI 470739

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 470739


PI 415152

text: UOM

text: public

text: PI 415152

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 415152


PI 606325

text: UOM

text: public

text: PI 606325

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 606325


PI 326312

text: UOM

text: public

text: PI 326312

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 326312


TRI 2884

text: UOM

text: public

text: TRI 2884

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 2884


TRI 27970

text: UOM

text: public

text: TRI 27970

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 27970


TRI 28861

text: UOM

text: public

text: TRI 28861

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 28861


TRI 6158

text: UOM

text: public

text: TRI 6158

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 6158


TRI 6141

text: UOM

text: public

text: TRI 6141

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 6141


TRI 28042

text: UOM

text: public

text: TRI 28042

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 28042


PI 347230

text: UOM

text: public

text: PI 347230

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 347230


TRI 14077

text: UOM

text: public

text: TRI 14077

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 14077


TRI 18260

text: UOM

text: public

text: TRI 18260

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 18260


TRI 5860

text: UOM

text: public

text: TRI 5860

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 5860


TRI 16879

text: UOM

text: public

text: TRI 16879

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 16879


TRI 17040

text: UOM

text: public

text: TRI 17040

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 17040


TRI 3424

text: UOM

text: public

text: TRI 3424

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 3424


TRI 17023

text: UOM

text: public

text: TRI 17023

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 17023


PI 348620

text: UOM

text: public

text: PI 348620

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 348620


TRI 17038

text: UOM

text: public

text: TRI 17038

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 17038


PI 470737

text: UOM

text: public

text: PI 470737

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 470737


PI 624903

text: UOM

text: public

text: PI 624903

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 624903


TRI 584

text: UOM

text: public

text: TRI 584

text: Triticum dicoccon

text: Triticum dicoccon

text: TRI 584


PI 626468

text: UOM

text: public

text: PI 626468

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 626468


PI 40919

text: UOM

text: public

text: PI 40919

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 40919


PI 94641

text: UOM

text: public

text: PI 94641

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 94641


PI 94633

text: UOM

text: public

text: PI 94633

text: PI 94633,

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 94633


PI 94660

text: UOM

text: public

text: PI 94660

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 94660


PI 190974

text: UOM

text: public

text: PI 190974

text: 223, Classified in SeedBank as timopheevii

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 190974


PI 113393

text: UOM

text: public

text: PI 113393

text: 29, Classified in SeedBank as turanicum

text: Triticum dicoccon

text: Triticum dicoccon

text: PI 113393


CItr 14600

text: UOM

text: public

text: CItr 14600

text: durum wheat

characteristic: common name

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: CItr 14600


PI 430747

text: UOM

text: public

text: PI 430747

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 430747


PI 487290

text: UOM

text: public

text: PI 487290

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 487290


PI 525339

text: UOM

text: public

text: PI 525339

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 525339


PI 27514

text: UOM

text: public

text: PI 27514

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 27514


PI 560883

text: UOM

text: public

text: PI 560883

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 560883


PI 572901

text: UOM

text: public

text: PI 572901

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 572901


PI 576837

text: UOM

text: public

text: PI 576837

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 576837


PI 631158

text: UOM

text: public

text: PI 631158

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 631158


PI 52503

text: UOM

text: public

text: PI 52503

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 52503


CItr 3117

text: UOM

text: public

text: CItr 3117

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: CItr 3117


PI 61164

text: UOM

text: public

text: PI 61164

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 61164


PI 94684

text: UOM

text: public

text: PI 94684

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 94684


PI 178043

text: UOM

text: public

text: PI 178043

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 178043


PI 178753

text: UOM

text: public

text: PI 178753

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 178753


PI 182666

text: UOM

text: public

text: PI 182666

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 182666


PI 7422

text: UOM

text: public

text: PI 7422

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 7422


PI 182674

text: UOM

text: public

text: PI 182674

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 182674


PI 182705

text: UOM

text: public

text: PI 182705

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 182705


PI 183521

text: UOM

text: public

text: PI 183521

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 183521


PI 192826

text: UOM

text: public

text: PI 192826

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 192826


PI 193390

text: UOM

text: public

text: PI 193390

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 193390


PI 244037

text: UOM

text: public

text: PI 244037

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 244037


PI 264941

text: UOM

text: public

text: PI 264941

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 264941


PI 268298

text: UOM

text: public

text: PI 268298

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 268298


PI 367194

text: UOM

text: public

text: PI 367194

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 367194


PI 420943

text: UOM

text: public

text: PI 420943

text: durum wheat

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: PI 420943


PI 167622

text: UOM

text: public

text: PI 167622

text: Triticum polonicum

text: Triticum polonicum

text: PI 167622


PI 210845

text: UOM

text: public

text: PI 210845

text: Triticum polonicum

text: Triticum polonicum

text: PI 210845


PI 245663

text: UOM

text: public

text: PI 245663

text: Triticum polonicum

text: Triticum polonicum

text: PI 245663


PI 349051

text: UOM

text: public

text: PI 349051

text: Triticum polonicum

text: Triticum polonicum

text: PI 349051


PI 366117

text: UOM

text: public

text: PI 366117

text: Triticum polonicum

text: Triticum polonicum

text: PI 366117


PI 525355

text: UOM

text: public

text: PI 525355

text: Triticum turgidum subsp. turanicum

text: Triticum turgidum subsp. turanicum

text: PI 525355


PI 624207

text: UOM

text: public

text: PI 624207

text: Triticum turgidum subsp. turanicum

text: Triticum turgidum subsp. turanicum

text: PI 624207


PI 317491

text: UOM

text: public

text: PI 317491

text: Triticum turgidum subsp. turanicum

text: Triticum turgidum subsp. turanicum

text: PI 317491


PI 10391

text: UOM

text: public

text: PI 10391

text: Triticum turgidum subsp. turanicum

text: Triticum turgidum subsp. turanicum

text: PI 10391


CItr 14598

text: UOM

text: public

text: CItr 14598

text: Triticum turgidum subsp. turanicum

text: Triticum turgidum subsp. turanicum

text: CItr 14598


CItr 14625

text: UOM

text: public

text: CItr 14625

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: CItr 14625


PI 525376

text: UOM

text: public

text: PI 525376

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 525376


PI 623927

text: UOM

text: public

text: PI 623927

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 623927


PI 57661

text: UOM

text: public

text: PI 57661

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 57661


PI 94689

text: UOM

text: public

text: PI 94689

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 94689


PI 125343

text: UOM

text: public

text: PI 125343

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 125343


PI 166496

text: UOM

text: public

text: PI 166496

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 166496


PI 185728

text: UOM

text: public

text: PI 185728

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 185728


PI 208912

text: UOM

text: public

text: PI 208912

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 208912


PI 278221

text: UOM

text: public

text: PI 278221

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 278221


PI 352544

text: UOM

text: public

text: PI 352544

text: Triticum turgidum subsp. turgidum

text: Triticum turgidum subsp. turgidum

text: PI 352544


text: UU

text: public

characteristic: collection date

text: freshwater metagenome

text: aquatic

characteristic: environment (biome)

text: freshwater

characteristic: environment (feature)

text: small lake

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: stratified

characteristic: lake stratification

text: hypolimnion

characteristic: layer sampled

text: TCGCCTTA-TAGATCGC

characteristic: multiplex identifiers

text: freshwater metagenome

text: initial denaturation step at 95 �C for 30 s, followed by 20 cycles of dissociation at 95 �C for 10 s, annealing at 53 �C for 30 s extension at 72 �C for 30 s, with a final extension of 2 min at 72 �C. then second round: initial denaturation step at 95 �C for 30 s, followed by 15 cycles of dissociation at 95 �C for 10 s, annealing at 66 �C for 30 s, extension at 72 �C for 30 s, with a final extension of 2 min at 72 �C

characteristic: pcr conditions

text: CCTACGGGNGGCWGCAG-GACTACNVGGGTATCTAATCC

characteristic: pcr primers

characteristic: ph

text: Lake Erken SSU rRNA gene amplicon timeseries

characteristic: project name

unit: °C

characteristic: sample storage temperature

unit: g

characteristic: sample volume or weight for DNA extraction

text: freshwater metagenome

text: Illumina Miseq PE

text: SSU rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

unit: µg/L

characteristic: total nitrogen

unit: µmol/L

characteristic: total phosphorus

text: water

characteristic: water environmental package