characteristic: ENA-CHECKLIST

characteristic: External Id

text: Charite Universitaetsmedizin Berlin

characteristic: INSDC center name

text: public

text: human

text: IonTorrent PGM AmpliSeq CHP, primary tumor (tu) regions R1-R5 and PD3D culture (PD3D) derivatives

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: patient CC0514 panel sequencing


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of human genetics

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Department of human genetics

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: female

characteristic: sex

text: ctDNA

characteristic: tissue type

characteristic: title


text: Universita' degli Studi di Milano

text: public

tag: Namespace:Universita' degli Studi di Milano

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Rectal swab

characteristic: isolate

text: Hospital

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Sample isolated from italian patient


Human cytomegalovirus1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

characteristic: INSDC center name

text: public

text: Human cytomegalovirus1

text: University College London

characteristic: collecting institution

text: Charlotte J. Houldcroft

characteristic: collector name

text: Human cytomegalovirus

text: Human cytomegalovirus (HCMV) sequences derived from residual diagnostic samples. All samples were positive for HCMV DNA by quantitative PCR. Samples were collected as part of standard clinical care and supplied anonymously between 2010-2016.

characteristic: description

text: United Kingdom

text: South-eat, London

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

text: homo sapiens

text: not collected

characteristic: host sex

text: GOSH

characteristic: host subject id

text: Urine

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: other

characteristic: sample capture status

text: Human betaherpesvirus 5

text: Human cytomegalovirus sequences derived from residual diagnostic samples

characteristic: virus identifier


text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 8

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: Transgenic Drosophila melanogaster carrying a mesodermally expressed tagged histone marker (1) were grown in population cages at 25 degr. Staged 2 hr collections of embryos were made on apple-agar plates and aged at 25 degr until the required stage of development. Embryos were dechorionated using 50% bleach and formaldehyde fixed in 10 ml cross-linking solution (50 mM Hepes, 1 mM EDTA, 0.5 mM EGTA, 100 mM NaCl, 1.8 % formaldehyde, pH 8.0) and 30ml n-heptane on a shaker table at RT for 15 minutes. The reaction was terminated with 125 mM glycine, 0.1% Triton X-100 in PBS. After washing out the fix, the embryos were blotted dry, snap frozen in liquid nitrogen, and stored at -80 degr. A small number of embryos from each collection was set aside for staging. 1.Bonn, S., Zinzen, R.P., Perez-Gonzalez, A., Riddell, A., Gavin, A.C., and Furlong, E.E. (2012). Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nat Protoc 7, 978-994. Nuclei were isolated from fixed, frozen embryos as described in (1). Nuclear pellets were resuspended in PBS with 5% BSA, 0.1% TritonX-100 and 0.2% Igepal-630 and rotated at 4 degr for 30 mins. Primary antibody staining was performed overnight at 4 degr in 3mL PBTB (PBS with 5% BSA and 0.1% TritonX-100) per 1g frozen embryos. Secondary antibody staining was performed for 1 hr at 4 degr in PBTB. Following each antibody staining nuclei were washed twice consisting of pelleting and resuspension in 10mL PBTB. An aliquot of stained, unsorted nuclei was put aside to represent the whole-embryo. FACS was performed to isolate the desired populations, and nuclei were consolidated and pelleted. For DNase digestion, nuclei were resuspended in R-buffer [7.5mM Tris pH8, 45mM NaCl, 30mM KCl, 6mM MgCl2, 1mM CaCl2). Nuclei [4-20x10e6 per digest] were digested in 500uL R-buffer containing 2-20 units of DNaseI depending on nuclei number (where possible with multiple concentrations) at 37C for 3min, and the reaction was stopped by adding 500uL Stop-buffer [50mM Tris, pH-8, 100mM NaCL, 0.1% SDS, 100mM EDTA pH-8]. A small control digest without DNaseI was performed to assess DNA integrity. Following addition of RNaseA, samples were incubated at 55 degr for 10 mins, then 25uL of ProteinaseK [25mg/mL] was added and the samples were incubated overnight at 65 degr to reverse cross-links. A small aliquot was run on a 1% agarose gel to assess digestion levels, and optimal digests were size fractionated using sucrose gradients. DNA fragments ~100-500bp were isolated from fractions using a Qiagen PCR clean up kit and checked for enrichment in known hypersensitive sites by qPCR. The digests with the highest qPCR enrichment were selected for library preparation. (1). Bonn, S., Zinzen, R.P., Perez-Gonzalez, A., Riddell, A., Gavin, A.C., and Furlong, E.E. (2012). Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nat Protoc 7, 978-994. Illumina-compatible DNA sequencing libraries including sample-specific (index read) and molecular barcodes (in-line) were prepared using the NextFlex qRNA-seq Kit v2 kit (Biooscientific #NOVA-5130-12) largely according to manufacturer's instructions. In short, between ~1 and 15ng DNA consisting of ~100-500bp fragments that result from DNase digestion was end-repaired and terminal adenosine residues were added. Adapters containing in-line molecular barcodes were ligated, after which the material was size selected using AMPure beads (negative selection with 0.6X beads, then postive selection with 0.98X beads). PCR amplification was performed using barcoded primers to introduce sample barcodes for 12-18 cycles, depending on input amount. The PCR-amplified library was purified using AMPure beads, quantified using a Qubit High-sensitivity DNA kit, and sized on an Agilent Bioanalyzer chip.

characteristic: genotype

text: egg laying

characteristic: initial time point

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: neurons

characteristic: organism part

text: Drosophila melanogaster

text: mixed sex

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

characteristic: INSDC center name

text: public

text: 6 to 8

text: ArrayExpress

text: fruit fly

characteristic: description

text: egg laying

text: Drosophila melanogaster

text: Drosophila melanogaster

text: whole embryo

text: Drosophila melanogaster

text: mixed sex


text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6 to 8

text: ArrayExpress

text: fruit fly

text: egg laying

text: Drosophila melanogaster

text: Drosophila melanogaster

text: myogenic mesoderm

text: Drosophila melanogaster

text: mixed sex


text: UNIMI

text: public

characteristic: Submitter Id

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae isolate PV1BC

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIMI

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate PV2BC

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIMI

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate PV7BC

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: UNIMI

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae isolate PV13BC

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

tag: Namespace:EUROPEAN MOLECUALR BIOLOGY LABORATORY, GENOME BIOLOGY UNIT

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RNAseq yeast knockout mutants


text: EUROPEAN MOLECUALR BIOLOGY LABORATORY, GENOME BIOLOGY UNIT

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RNAseq yeast knockout mutants


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

tag: Namespace:NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: Bacterial communities associated with butterflies

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Ariadne merione (Adult 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Adult 2)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

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text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Adult 3)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

text: EnvO

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Adult 4)


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Ariadne merione (Adult 5)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Pupa 1)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Pupa 2)


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Pupa 3)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Ariadne merione (Pupa 4)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

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text: insect gut metagenome

text: Illumina

text: Ariadne merione (Pupa 5)

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characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Larva 1)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Larva 2)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Ariadne merione (Larva 3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Larva 4)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Ariadne merione (Larva 5)


text: KU LEUVEN / VIB

text: public

tag: Namespace:KU LEUVEN / VIB

characteristic: collection date

text: human

characteristic: common name

text: Fecal sample from human

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Count Your Blessings

characteristic: project name

text: Homo sapiens

text: 16S rRNA gene with Illumina Miseq

text: Disease cohort


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Eurema blanda (Larva 1)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

text: EnvO

text: India

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Larva 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Larva 3)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Eurema blanda (Larva 4)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC last update

text: public

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characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Pupa 1)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Pupa 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Pupa 3)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

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characteristic: Submitter Id

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text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Eurema blanda (Pupa 4)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Pupa 5)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Pupa 6)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC last update

text: public

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characteristic: SRA accession

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characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Pupa 7)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Eurema blanda (Adult 1)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Adult 2)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Adult 3)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

text: host-associated

text: metagenome

characteristic: investigation type

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

text: Eurema blanda (Adult 4)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Eurema blanda (Adult 5)


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: cDNA library from a single E9.5 mouse placenta, heterozygous for Bap1, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: strain

characteristic: title


text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: cDNA library from a single wt E9.5 mouse placenta from Bap1, prepared using Illumina TruSeq Stranded mRNA LT kit./ C57BL/6N parents, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: cDNA library from a single E9.5 mouse placenta, homozygous for Bap1, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: subject id


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single E11.5 mouse placenta, heterozygous for Nubpl, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: cDNA library from a single wt E11.5 mouse placenta from heterozygous Nubpl/ C57BL/6N parents, prepared using Illumina TruSeq Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: cDNA library from a single E9.5 mouse placenta, homozygous for Crb2, prepared using Illumina Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: cDNA library from a single E9.5 mouse placenta, heterozygous for Crb2, prepared using Illumina Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: cDNA library from a single wt E9.5 mouse placenta from Crb2/ C57BL/6N parents, prepared using Illumina Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


E-MTAB-5954:GMR/+ Larva 1

characteristic: INSDC first public

text: public

text: E-MTAB-5954:GMR/+ Larva 1

tag: Namespace:INGM, National Institute of Molecular Genetics, “Romeo ed Enrica Invernizzi”, Milan, Italy

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: Protocols: Fly strains were maintained on standard cornmeal food at 18°C. Flies were investigated at the third instar larva stage and in pupa 40 hours after puparium formation. RNA was extracted with mirVana isolation kit according to the manufacturer protocols (mirVana ThermoFisher #AM 1560). Libraries for Illumina sequencing were constructed from 100 ng of total RNA. Libraries for eye imaginal disc were prepared with the Illumina TruSeq RNA Sample Preparation Kit.

characteristic: description

text: third instar larva stage

characteristic: developmental stage

text: GMR/+

characteristic: genotype

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: eye disc

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Drosophila melanogaster

text: GMR/+ Larva 1


E-MTAB-5954:GMR/+ Larva 2

text: INGM, National Institute of Molecular Genetics, “Romeo ed Enrica Invernizzi”, Milan, Italy

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5954:GMR/+ Larva 2

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

characteristic: common name

text: third instar larva stage

text: GMR/+

text: Drosophila melanogaster

text: Drosophila melanogaster

text: eye disc

text: wild type phenotype

text: Drosophila melanogaster

text: GMR/+ Larva 2


E-MTAB-5954:GMR/+ Larva 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5954:GMR/+ Larva 3

text: ArrayExpress

text: fruit fly

text: third instar larva stage

text: GMR/+

text: Drosophila melanogaster

text: Drosophila melanogaster

text: eye disc

text: wild type phenotype

text: Drosophila melanogaster

text: GMR/+ Larva 3

characteristic: title


E-MTAB-5954:GMR/+ Pupa 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5954:GMR/+ Pupa 1

characteristic: age

text: ArrayExpress

text: fruit fly

text: Protocols: Fly strains were maintained on standard cornmeal food at 18°C. Flies were investigated at the third instar larva stage and in pupa 40 hours after puparium formation. RNA was extracted with mirVana isolation kit according to the manufacturer protocols (mirVana ThermoFisher #AM 1560). Libraries for Illumina sequencing were constructed from 100 ng of total RNA. Libraries for pupal retinae were prepared with random primed cDNA protocol according to GATC biotech company protocols.

text: pupa

text: GMR/+

text: Drosophila melanogaster

text: Drosophila melanogaster

text: retina

text: wild type phenotype

text: Drosophila melanogaster

text: GMR/+ Pupa 1


E-MTAB-5954:GMR/+ Pupa 2

characteristic: INSDC first public

text: public

text: E-MTAB-5954:GMR/+ Pupa 2

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: description

text: pupa

characteristic: developmental stage

text: GMR/+

text: Drosophila melanogaster

text: Drosophila melanogaster

text: retina

text: wild type phenotype

text: Drosophila melanogaster

text: GMR/+ Pupa 2


E-MTAB-5954:GMR/+ Pupa 3

text: public

text: E-MTAB-5954:GMR/+ Pupa 3

text: ArrayExpress

text: fruit fly

text: pupa

text: GMR/+

characteristic: genotype

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: retina

characteristic: organism part

text: wild type phenotype

characteristic: phenotype

text: Drosophila melanogaster

text: GMR/+ Pupa 3


E-MTAB-5954:GMR/+ Pupa 4

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-5954:GMR/+ Pupa 4

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

text: pupa

text: GMR/+

text: Drosophila melanogaster

text: Drosophila melanogaster

text: retina

text: wild type phenotype

text: Drosophila melanogaster

text: GMR/+ Pupa 4


E-MTAB-5954:GMR>DeIF6 Larva 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-5954:GMR>DeIF6 Larva 1

text: ArrayExpress

text: fruit fly

characteristic: common name

text: third instar larva stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: eye disc

text: DelF6 overexpression

text: Drosophila melanogaster

text: GMR>DeIF6 Larva 1

characteristic: title


E-MTAB-5954:GMR>DeIF6 Larva 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-5954:GMR>DeIF6 Larva 2

text: ArrayExpress

text: fruit fly

text: third instar larva stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: eye disc

text: DelF6 overexpression

text: Drosophila melanogaster

text: GMR>DeIF6 Larva 2


E-MTAB-5954:GMR>DeIF6 Larva 3

characteristic: INSDC first public

text: public

text: E-MTAB-5954:GMR>DeIF6 Larva 3

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: description

text: third instar larva stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: eye disc

text: DelF6 overexpression

text: Drosophila melanogaster

text: GMR>DeIF6 Larva 3


E-MTAB-5954:GMR>DeIF6 Pupa 1

text: public

text: E-MTAB-5954:GMR>DeIF6 Pupa 1

characteristic: age

text: ArrayExpress

text: fruit fly

text: pupa

characteristic: developmental stage

characteristic: genotype

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: retina

text: DelF6 overexpression

text: Drosophila melanogaster

text: GMR>DeIF6 Pupa 1


E-MTAB-5954:GMR>DeIF6 Pupa 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5954:GMR>DeIF6 Pupa 2

text: ArrayExpress

text: fruit fly

text: pupa

text: Drosophila melanogaster

text: Drosophila melanogaster

text: retina

characteristic: organism part

text: DelF6 overexpression

characteristic: phenotype

text: Drosophila melanogaster

text: GMR>DeIF6 Pupa 2


E-MTAB-5954:GMR>DeIF6 Pupa 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-5954:GMR>DeIF6 Pupa 3

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

text: pupa

text: Drosophila melanogaster

text: Drosophila melanogaster

text: retina

text: DelF6 overexpression

text: Drosophila melanogaster

text: GMR>DeIF6 Pupa 3


E-MTAB-5954:GMR>DeIF6 Pupa 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-5954:GMR>DeIF6 Pupa 4

text: ArrayExpress

text: fruit fly

characteristic: common name

text: pupa

text: Drosophila melanogaster

text: Drosophila melanogaster

text: retina

text: DelF6 overexpression

text: Drosophila melanogaster

text: GMR>DeIF6 Pupa 4

characteristic: title


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single E9.5 mouse placenta, homozygous for Nubpl, prepared using Illumina Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single E9.5 mouse placenta, heterozygous for Nubpl, prepared using Illumina Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Mus Musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wt E9.5 mouse placenta from heterozygous Nubpl/ C57BL/6N parents, prepared using Illumina Stranded mRNA LT kit. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


Inoculum

characteristic: ENA-FIRST-PUBLIC

text: Biological Engineering

text: public

text: Inoculum

tag: Namespace:Biological Engineering

text: Inoculum sludge for Hexadecene-degrading enrichments

characteristic: description

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: Inoculum


text: Biological Engineering

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Hexadecene-degrading enrichment culture (series 4, before stimulus with co-substrates)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Biological Engineering

text: public

text: Hexadecene-degrading enrichment culture (after stimulus with yeast extract, bottle 1)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: Biological Engineering

text: public

text: Hexadecene-degrading enrichment culture (after stimulus with yeast extract, bottle 2)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

characteristic: title


text: Biological Engineering

text: public

text: Hexadecene-degrading enrichment culture (after stimulus with lactate, bottle 1)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: Biological Engineering

text: public

text: Hexadecene-degrading enrichment culture (after stimulus with lactate, bottle 2)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: Biological Engineering

text: public

text: Hexadecene-degrading enrichment culture (after extended stimulus with yeast extract, bottle 1)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: Biological Engineering

text: public

text: Hexadecene-degrading enrichment culture (after extended stimulus with yeast extract, bottle 2)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: Biological Engineering

text: public

text: Enrichment culture stimulated with crotonate (no ability to degrade hexadecene, bottle 1)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: Biological Engineering

text: public

text: Enrichment culture stimulated with crotonate (no ability to degrade hexadecene, bottle 2)

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: Bacterial communities associated with butterflies

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Spalgis epeus (Larva 1)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Larva 2)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Larva 3)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Larva 4)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Spalgis epeus (Larva 5)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Pupa 1)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Pupa 2)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Pupa 3)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Spalgis epeus (Pupa 4)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Pupa 5)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Pupa 6)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnvO

text: EnvO

text: EnvO

text: India

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Adult 1)


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: project name

text: insect gut metagenome

text: Illumina

characteristic: sequencing method

text: Spalgis epeus (Adult 2)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (latitude)

text: host-associated

text: metagenome

text: insect gut metagenome

characteristic: organism

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Adult 3)


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: EnvO

text: EnvO

text: EnvO

text: India

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Adult 4)

characteristic: title


text: NATIONAL CENTRE FOR BIOLOGICAL SCIENCES

text: public

characteristic: collection date

text: EnvO

characteristic: environment (biome)

text: EnvO

characteristic: environment (feature)

text: EnvO

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: insect gut metagenome

text: insect gut metagenome

text: Illumina

text: Spalgis epeus (Adult 5)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EAWAG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

unit: L

characteristic: amount or size of sample collected

text: A sequencing batch reactor operating with sludge originating from the Niderglatt WWTP was operated with a sludge retention time of 1 day. Samples were withdrawn after exposing the reactor to a set of micropollutants.

characteristic: description

text: wastewater treatment plant

text: sewage

text: sludge

text: Switzerland

text: metatranscriptome

characteristic: nucleic acid extraction

text: wastewater metagenome

text: PROduCTS

characteristic: project name

characteristic: reactor sample date

characteristic: reactor start date

text: 12 L

characteristic: reactor volume

unit: °C

characteristic: sample storage temperature

text: wastewater metagenome

text: Illumina

characteristic: sequencing method

text: Wastewater Treatment Plant

characteristic: sewage type

unit: day

characteristic: sludge retention time

unit: g/L

characteristic: suspended solids

text: Sequencing batch reactor sludge retention time 1 day

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAWAG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: A sequencing batch reactor operating with sludge originating from the Niderglatt WWTP was operated with a sludge retention time of 3 days. Samples were withdrawn after exposing the reactor to a set of micropollutants.

text: wastewater treatment plant

characteristic: environment (biome)

text: sewage

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: PROduCTS

text: 12 L

text: wastewater metagenome

text: Illumina

text: Wastewater Treatment Plant

text: Sequencing batch reactor sludge retention time 3 days

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: EAWAG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: amount or size of sample collected

text: wastewater treatment plant

text: sewage

text: sludge

text: Switzerland

text: metatranscriptome

characteristic: nucleic acid extraction

text: wastewater metagenome

text: PROduCTS

characteristic: project name

characteristic: reactor sample date

characteristic: reactor start date

text: 12 L

characteristic: reactor volume

characteristic: sample storage temperature

text: wastewater metagenome

text: Illumina

characteristic: sequencing method

text: Wastewater Treatment Plant

characteristic: sewage type

characteristic: sludge retention time

characteristic: suspended solids

text: Sequencing batch reactor sludge retention time 5 days

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAWAG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: A sequencing batch reactor operating with sludge originating from the Niderglatt WWTP was operated with a sludge retention time of 7 days. Samples were withdrawn after exposing the reactor to a set of micropollutants.

characteristic: description

text: wastewater treatment plant

characteristic: environment (biome)

text: sewage

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: PROduCTS

text: 12 L

text: wastewater metagenome

text: Illumina

text: Wastewater Treatment Plant

text: Sequencing batch reactor sludge retention time 7 days

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EAWAG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: amount or size of sample collected

text: A sequencing batch reactor operating with sludge originating from the Niderglatt WWTP was operated with a sludge retention time of 10 days. Samples were withdrawn after exposing the reactor to a set of micropollutants.

text: wastewater treatment plant

text: sewage

text: sludge

text: Switzerland

text: metatranscriptome

characteristic: nucleic acid extraction

text: wastewater metagenome

text: PROduCTS

characteristic: project name

characteristic: reactor sample date

characteristic: reactor start date

text: 12 L

characteristic: reactor volume

characteristic: sample storage temperature

text: wastewater metagenome

text: Illumina

characteristic: sequencing method

text: Wastewater Treatment Plant

characteristic: sewage type

characteristic: sludge retention time

characteristic: suspended solids

text: Sequencing batch reactor sludge retention time 10 days

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAWAG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: A sequencing batch reactor operating with sludge originating from the Niderglatt WWTP was operated with a sludge retention time of 15 days. Samples were withdrawn after exposing the reactor to a set of micropollutants.

characteristic: description

text: wastewater treatment plant

characteristic: environment (biome)

text: sewage

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

text: PROduCTS

text: 12 L

text: wastewater metagenome

text: Illumina

text: Wastewater Treatment Plant

text: Sequencing batch reactor sludge retention time 15 days

characteristic: title

text: wastewater/sludge


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EAWAG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: amount or size of sample collected

text: A sequencing batch reactor operating with sludge originating from the Niderglatt WWTP was operated with a sludge retention time of 5 days. Samples were withdrawn after exposing the reactor to a set of micropollutants.

text: wastewater treatment plant

text: sewage

text: sludge

text: Switzerland

text: metatranscriptome

characteristic: nucleic acid extraction

text: wastewater metagenome

text: PROduCTS

characteristic: project name

characteristic: reactor sample date

characteristic: reactor start date

text: 12 L

characteristic: reactor volume

characteristic: sample storage temperature

text: wastewater metagenome

text: Illumina

characteristic: sequencing method

text: Wastewater Treatment Plant

characteristic: sewage type

characteristic: sludge retention time

characteristic: suspended solids

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: Submitter Id

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Benzene degradation under sulfate-reducing conditions

characteristic: title

type: has member


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Hiseq 2x250


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: seawater metagenome

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Hiseq 2x251

characteristic: sequencing method

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: environment (biome)

characteristic: environment (feature)

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Hiseq 2x252


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: seawater metagenome

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Hiseq 2x253


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: seawater metagenome

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Hiseq 2x254

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: environment (biome)

characteristic: environment (feature)

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Hiseq 2x255


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: seawater metagenome

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Hiseq 2x256


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: seawater metagenome

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Hiseq 2x257

characteristic: sequencing method

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: environment (biome)

characteristic: environment (feature)

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Hiseq 2x258


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: seawater metagenome

characteristic: environment (material)

text: water

characteristic: environmental package

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: seawater metagenome

characteristic: project name

text: seawater metagenome

text: PE Illumina Hiseq 2x259


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: seawater metagenome

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

characteristic: organism

text: seawater metagenome

text: PE Illumina Hiseq 2x260

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SOUTHERN CALIFORNIA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: seawater metagenome

characteristic: common name

characteristic: depth

characteristic: environment (biome)

characteristic: environment (feature)

text: water

text: Pacific Ocean

text: metagenome

text: seawater metagenome

text: seawater metagenome

text: PE Illumina Hiseq 2x261


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF SOUTHERN CALIFORNIA

text: public

text: Blank library

characteristic: description

text: unidentified

text: unidentified


text: Departement de Cancerologie de l'Enfant et de l'Adolescent & UMR8203 \Vectorologie et Therapeutiques Anticancereuses\, CNRS, Gustave Roussy

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Departement de Cancerologie de l'Enfant et de l'Adolescent & UMR8203 \"Vectorologie et Therapeutiques Anticancereuses\", CNRS, Gustave Roussy

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: skeletal muscle myoblast

characteristic: cell type

text: house mouse

text: Protocols: Freshly dissociated muscle cells were subjected to FACS sorting based on positive GFP-fluorescence and negative Propidium Iodide fluorescence purify quiescent muscle satellite cells. These isolated quiescent satellite cells were either collected for RNA extraction or seeded at 3,000 cells/cm2 in 1:1 DMEM:MCDB (Gibco and Sigma-Aldrich, respectively) containing 20% serum FBS (Gibco) and 1% Ultroser G (Pall) on Matrigel coated flasks (BD Biosciences) and cultured in an incubator under physiological oxygen pressure (37°C, 6.5% CO2, 3% O2). Sixty hours after plating, half the cells were gathered for RNA extraction and for the remaining cultures, medium was replaced to remove Ultroser G, and cells were further cultured for a total of 7 days to reach early differentiation. Six-weeks old male Tg:Pax7-nGFP mice were sacrificed by cervical dislocation, and their limb muscle were dissected, minced and digested in collagenase 0.1% and trypsin 0.25% at 37°C under gentle agitation. Cells were collected in serum-containing medium. For RNA collection, quiescent cells were directly sorted into Trizol-LS reagent (Invitrogen), and in-vitro cultured cells (activated at 60 hours and differentiated at 7 days) collected in Qiazol reagent (QIagen). Total RNA was subsequently purified using the miRNeasy Mini Kit following the manufacturer instructions (Qiagen). Ten micrograms of total RNA -obtained from several animals for the quiescent samples, were used for each biological replicate prepared for deep sequencing (i.e. 2 replicates for the quiescent and differentiated samples, and 3 replicates for the in vitro activated sample). For each biological replicate, 10 µg of total RNA (in 10 µl) were mixed with 10 µl of 2X TBE-Urea Sample Buffer (Invitrogen) and loaded in a well of a 15% polyacrylamide TBE-urea gel (Biorad). After migration, the gel was soaked in a SYBR gold (Invitrogen) solution, and imaged on a Dark Reader transilluminator. The 18-35 nucleotide region was cut using a scalpel for each sample, and the RNA eluted in 300 µl of 0.3 M NaCl solution under rotation for 4 hours at room temperature. The eluate was transferred together with gel debris onto a Spin X cellulose acetate filter (VWR) and centrifuged for 2 minutes at 12,000 xg. Small RNAs were finally precipitated by addition of 1 μl of glycogen (Invitrogen) and 750 μl of room temperature 100% ethanol followed by an incubation at -80°C for 30 minutes, and centrifugation for 25 minutes at 14,000 rpm and +4°C. The pellet was washed with 750 µl 75% Ethanol, dried and resuspended in 5 µl ultrapure water with 0.5 µl of RNAseOUT (Invitrogen). Small RNAs purified on gel were mixed to 1 µl of 10 µM pre-adenylated 3’ Illumina linker V1.5 (5'-rAppATCTCGTATGCCGTCTTCTGCTTG/3ddC/-3'), denatured for 2 minutes at 70°C, and further mixed with 1 µl of 10X T4 RNA-Ligase Truncated Reaction buffer, 0.8 µl 100 mM MgCl2, 0.5 µl RNaseOut and 1.5 µl of T4 RNA Ligase 2 truncated (New England Biolabs). Ligation was performed at 22°C for 1 hour. Then, 0.5µl of 5'-RNA adapter (5'-r(GUU CAG AGU UCU ACA GUC CGA CGA UC) -3'), 1 µl of 10 mM ATP and 1µl T4 RNA ligase (Ambion) were added, and ligation, performed at 20°C for 6 hours. Purified 5' and 3' ligated RNA in a volume of 4µl were then mixed with 1 µl of Solexa RT primer (20M) and denatured at 70°C and cooled on ice. Reverse transcription was then performed after addition of 2µl 5X first strand buffer (Invitrogen), 0.5µl of 12.5 mM dNTP mix, 1µl of 100 mM DTT, 0.5µl_ RNase OUT and 1 µl SuperScript III Reverse Transcriptase (Invitrogen) at 50°C for 1 hour, followed by 10 minutes at 70°C. The obtained cDNA was PCR amplified by addition of 27 µl Ultra-pure water, 10µl 5X Phusion-HF buffer, 1µl of 25µM Forward Primer (5’- AAT GAT ACG GCG ACC ACC GAC AGG TTC AGA GTT CTA CAG TCC GA -3’), 1µl of 25 µM revevrse Primer(5‘- CAA GCA GAA GAC GGC ATA CGA -3’), 0.5µl of 25 mM dNTP mix, and 0.5µl Phusion DNA Polymerase (Finnzymes) using 12 cycles 98°c 10 sec / 60°C 30 sec /72°C 15 sec. The library was finally purified on a 5% TBE PAGE gel, by cutting the region corresponding to the 92-106bp (the ligated linkers corresponding to a 73bp band visible on the gel). The gel was crushed by centrifugation and eluted in 1X Elution buffer (Illumina) by rotation for 2 hours at RT. The eluate was cleared using a Spin-X column and precipitated after addition of 1 µl of glycogen, 10 µl of 3M NaOAc and 325 µl of -20°C 100% ethanol, followed by a 20 min centrifugation at 14,000 rpm. After washing, the pellet was resuspended in 1ml dH2O. Finally, the sample was diluted to 10 nM and submitted to sequencing on a Solexa GA-IIX at the core sequencing facility.

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: musculature

characteristic: organism part

text: Activated

characteristic: phenotype

characteristic: replicate

text: limb muscles and diaphragm

characteristic: sampling site

characteristic: sampling time point

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: skeletal muscle myoblast

text: house mouse

characteristic: common name

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: musculature

text: Differentiated

text: limb muscles and diaphragm

text: Mus musculus

text: male

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: skeletal muscle myoblast

characteristic: cell type

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: musculature

characteristic: organism part

text: Quiescent

text: limb muscles and diaphragm

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2017-806-PRJ1111-Escherischia-coli-360-16019810_S28_L001_R1_001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broiler meat

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2017-807-PRJ1111-Escherischia-coli-360-16020676_S29_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: France

text: France

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU2017-808-PRJ1111-Escherischia-coli-360-16020678_S30_L001_R1_001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: France

characteristic: geo loc name

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2017-809-PRJ1111-Escherischia-coli-360-16020939_S31_L001_R1_001

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broiler meat

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2017-810-PRJ1111-Escherischia-coli-360-16027194_S32_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2017-811-PRJ1111-Escherischia-coli-360-16027204_S33_L001_R1_001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU2017-812-PRJ1111-Escherischia-coli-360-16027227_S34_L001_R1_001

text: DTU-GE

text: DTU

text: No

text: Denmark

text: Denmark

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broiler meat

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2017-813-PRJ1111-Escherischia-coli-360-16027238_S35_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2017-814-PRJ1111-Escherischia-coli-360-16027247_S36_L001_R1_001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

text: public

text: DTU2017-815-PRJ1111-Escherischia-coli-360-16027377_S37_L001_R1_001

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broiler meat

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2017-816-PRJ1111-Escherischia-coli-360-16027457_S38_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2017-817-PRJ1111-Escherischia-coli-360-16027467_S39_L001_R1_001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU2017-818-PRJ1111-Escherischia-coli-360-16028116_S40_L001_R1_001

text: DTU-GE

text: DTU

text: No

text: France

text: France

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broiler meat

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2017-819-PRJ1111-Escherischia-coli-360-16028117_S41_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Germany

text: Germany

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU2017-820-PRJ1111-Escherischia-coli-360-16028159_S1_L001_R1_001

text: DTU-GE

text: DTU

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geo loc name

text: Denmark

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

text: public

text: DTU2017-821-PRJ1111-Escherischia-coli-360-16028160_S2_L001_R1_001

text: DTU-GE

text: DTU

text: No

text: Germany

text: Germany

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: Gallus gallus

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Broiler meat

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU2017-822-PRJ1111-Escherischia-coli-360-16028944_S3_L001_R1_001

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: DTU

text: No

text: Denmark

text: Denmark

text: not provided

text: Gallus gallus

text: Yes

text: Broiler meat

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

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