E-MTAB-6469:Tn5 (B/B)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6469:Tn5 (B/B)

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

characteristic: nb multiplexed samples

characteristic: nb reads

text: Homo sapiens

text: Homo sapiens

text: 1000 ng

characteristic: rna per sample

text: SSII

text: Homo sapiens

text: Nick translation

text: Tn5 (B/B)

text: B/B

text: Tn5 comparison (Supp Fig S1B)


E-MTAB-6469:TruSeq (T0, rep 1)

status: PUBLIC

tag: attribute

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6469:TruSeq (T0, rep 1)

tag: Namespace:Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland

text: ArrayExpress

characteristic: broker name

text: adipose tissue derived mesenchymal stem cell

characteristic: cell type

text: human

text: Protocols: hASC were obtained from a fresh lipoaspirate as following. 50 ml of lipoaspirate was washed twice with 40 ml of DPBS Ca+/Mg+ (Gibco, #14040091) in 100 ml syringes and incubated with 0.28 U/ml of liberase TM (Roche, #05401119001(ROC)) for 45 min at 37ºC under agitation. The digested tissue was mixed with 40 ml of CRB (1% human albumin (CSL Behring) in 40 ml of DPBS -/- (Gibco, #14190094)) and shaken vigorously to liberate the stromal cells. The aqueous phase was recovered and centrifuged at 400g for 5 minutes at RT. The cell pellet was resuspended in 15 ml of CRB and filtered through a 100 µm and then 40 µm cell strainer to ensure a single cell preparation, centrifuged and resuspended in Minimum Essential Medium (MEM) alpha (Gibco, #32561037) supplemented with 5% human platelet lysate (Cook Regentec, #G34936) and 50 µg/mL Primocin (InvivoGen, #ant-pm-1). hASCs were cultured in the same media composition until 70-80% confluency and detached using TrypLE Select (Life Technology, 1256311) for passaging. For the adipogenic differentiation, cells at confluence were treated with induction cocktail from Adipogenic BulletKit (Lonza, PT-3004) for 7 days, followed by treatment with maintenance cocktail for another 7 days. Total RNA was isolated using TRIzol (Sigma) and followed by double precipitation with ethanol. TruSeq libraries were prepared with 1 µg of total RNA using the TruSeq Stranded mRNA Library Prep Kit (Illumina, RS-122-2101) and following the manufacturer's instructions.

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: 1000 ng

text: Homo sapiens

text: Nick translation

characteristic: second-strand synthesis

text: TruSeq (T0, rep 1)

characteristic: title

text: TruSeq

characteristic: used for


E-MTAB-6469:TruSeq (T0, rep 2)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6469:TruSeq (T0, rep 2)

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: technical replicate

characteristic: replicate

text: 1000 ng

text: Homo sapiens

text: Nick translation

text: TruSeq (T0, rep 2)

text: TruSeq


E-MTAB-6469:TruSeq (T14, rep 1)

characteristic: External Id

text: public

text: E-MTAB-6469:TruSeq (T14, rep 1)

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: 1000 ng

characteristic: rna per sample

text: Homo sapiens

text: Nick translation

text: TruSeq (T14, rep 1)

text: TruSeq


E-MTAB-6469:TruSeq (T14, rep 2)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6469:TruSeq (T14, rep 2)

text: ArrayExpress

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens

text: technical replicate

text: 1000 ng

text: Homo sapiens

text: Nick translation

text: TruSeq (T14, rep 2)

text: TruSeq


text: URMITE

text: public

text: Feces of wild boar

characteristic: isolation source

text: Nocardia sp. S-137

characteristic: organism

text: Nocardia sp. S-137

characteristic: strain

text: Nocardia suismassiliense genome


Cheese A1

characteristic: ENA-CHECKLIST

text: CERELA

text: public

text: Cheese A1

text: Nadia Suárez, Ivana Slozilová, Lucila Saavedra, Fernando Sesma.

characteristic: collected by

characteristic: collection date

text: These are 16S amplicon sequencing data representing bacterial communities from a cow’s milk artisanal cheese from the northwest Argentina. The bacterial data is from the V4 region. The goal of the project is to assess the taxonomic affiliation and function potential for bacteriocin production of the bacterial populations in this type of cheeses.

characteristic: description

text: Yes

characteristic: environmental sample

text: Argentina

characteristic: geographic location (country and/or sea)

text: Tucumán

characteristic: geographic location (region and locality)

text: cow’s milk artisanal cheese

text: metagenome

text: metagenome

text: 16S amplicon sequencing of artisanal cheese A1

characteristic: title


Cheese A2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CERELA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cheese A2

characteristic: Submitter Id

text: These are 16S amplicon sequencing data from a replicate of Cheese A1 sample , representing bacterial communities from this cow’s milk artisanal cheese from the northwest Argentina. The bacterial data is from the V4 region. The goal of the project is to assess the taxonomic affiliation and function potential for bacteriocin production of the bacterial populations in this type of cheeses.

text: Yes

text: Argentina

text: Tucumán

text: cow’s milk artisanal cheese

text: metagenome

text: metagenome

text: 16S amplicon sequencing of artisanal cheese A2


Cheese B1

text: CERELA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Cheese B1

text: Yes

text: Argentina

text: Tucumán

text: cow’s milk artisanal cheese

characteristic: isolation source

text: metagenome

text: metagenome

text: 16S amplicon sequencing of artisanal cheese B1


Cheese B2

characteristic: ENA-CHECKLIST

text: CERELA

text: public

text: Cheese B2

characteristic: collected by

text: These are 16S amplicon sequencing data from a replicate of Cheese B1 sample , representing bacterial communities from this cow’s milk artisanal cheese from the northwest Argentina. The bacterial data is from the V4 region. The goal of the project is to assess the taxonomic affiliation and function potential for bacteriocin production of the bacterial populations in this type of cheeses.

text: Yes

text: Argentina

text: Tucumán

text: cow’s milk artisanal cheese

text: metagenome

characteristic: organism

text: metagenome

text: 16S amplicon sequencing of artisanal cheese B2


Cheese C1

text: CERELA

text: public

text: Cheese C1

characteristic: collection date

characteristic: description

text: Yes

characteristic: environmental sample

text: Argentina

text: Tucumán

text: cow’s milk artisanal cheese

text: metagenome

text: metagenome

text: 16S amplicon sequencing of artisanal cheese C1


Cheese  C2

text: CERELA

text: public

text: Cheese C2

text: These are 16S amplicon sequencing data from a replicate of Cheese C1 sample , representing bacterial communities from this cow’s milk artisanal cheese from the northwest Argentina. The bacterial data is from the V4 region. The goal of the project is to assess the taxonomic affiliation and function potential for bacteriocin production of the bacterial populations in this type of cheeses.

text: Yes

text: Argentina

characteristic: geographic location (country and/or sea)

text: Tucumán

characteristic: geographic location (region and locality)

text: cow’s milk artisanal cheese

text: metagenome

text: metagenome

text: 16S amplicon sequencing of artisanal cheese C2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

text: Anaerobic digester microbiome

characteristic: environment (biome)

text: Anaerobic sludge digester

characteristic: environment (feature)

text: Anaerobic digester biomass

characteristic: environment (material)

text: Denmark

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: anaerobic digester metagenome

text: Normigas

characteristic: project name

text: anaerobic digester metagenome

text: Illumina

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

text: AALBORG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Anaerobic digester microbiome

text: Anaerobic sludge digester

text: Anaerobic digester biomass

text: Denmark

text: metagenome

text: anaerobic digester metagenome

characteristic: organism

text: Normigas

text: anaerobic digester metagenome

text: Illumina

text: 2015W07-Esbjerg 2A

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

tag: Namespace:UNIVERSITY OF NOTTINGHAM

text: agriculture

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: crop

characteristic: history/previous land use

text: metagenome

text: metagenome

text: control

characteristic: perturbation

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: Woburn C1

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

text: field

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: crop

text: metagenome

characteristic: investigation type

text: metagenome

text: control

text: Adaptation to Environmental Stress

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Woburn C2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agriculture

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: crop

text: metagenome

text: metagenome

characteristic: organism

text: control

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

text: Woburn C3


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

text: field

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (elevation)

text: crop

characteristic: history/previous land use

text: metagenome

text: metagenome

text: copper

characteristic: perturbation

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: Woburn P1

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agriculture

text: field

text: soil

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: crop

text: metagenome

characteristic: investigation type

text: metagenome

text: copper

text: Adaptation to Environmental Stress

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Woburn P2


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: crop

text: metagenome

text: metagenome

characteristic: organism

text: copper

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

text: Woburn P3


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agriculture

text: field

text: soil

text: United Kingdom

characteristic: geographic location (elevation)

text: crop

characteristic: history/previous land use

text: metagenome

text: metagenome

text: control

characteristic: perturbation

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: Hartwood C1

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

characteristic: environment (biome)

text: field

text: soil

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: crop

text: metagenome

characteristic: investigation type

text: metagenome

text: control

text: Adaptation to Environmental Stress

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Hartwood C2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agriculture

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: crop

text: metagenome

text: metagenome

characteristic: organism

text: control

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

text: Hartwood C3


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

characteristic: environment (biome)

text: field

text: soil

text: United Kingdom

characteristic: geographic location (elevation)

text: crop

characteristic: history/previous land use

text: metagenome

text: metagenome

text: copper

characteristic: perturbation

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: Hartwood P1

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agriculture

text: field

text: soil

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: crop

text: metagenome

characteristic: investigation type

text: metagenome

text: copper

text: Adaptation to Environmental Stress

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Hartwood P2


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

characteristic: environment (biome)

text: field

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: crop

text: metagenome

text: metagenome

characteristic: organism

text: copper

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

text: Hartwood P3


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NOTTINGHAM

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: agriculture

text: pond

text: soil

text: United Kingdom

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: control

characteristic: perturbation

text: Adaptation to Environmental Stress

text: metagenome

text: Illumina

text: soil

characteristic: soil environmental package

text: Tavistock C1

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF NOTTINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: agriculture

text: river

text: soil

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: copper, arsenic

text: Adaptation to Environmental Stress

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: soil

text: Tavistock P1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

tag: Namespace:Chengdu research base of giant panda breeding

text: giant panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: metagenome

characteristic: organism

text: Study for giant panda gut microbiota and cellulose digestion mechanism

text: metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: pore coral

characteristic: common name

text: Australia

characteristic: geographic location (region and locality)

text: -18.593769 + 146.484414

characteristic: lat lon

text: Montipora spumosa

text: Montipora spumosa

text: Sperm DNA of Montipora Spumosa Coral Genome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: pore coral

text: Australia

text: -18.593769 + 146.484414

text: Montipora spumosa

text: Montipora spumosa

text: Sperm DNA of Montipora Spumosa Coral Genome and Trascriptome


text: Chengdu research base of giant panda breeding

text: public

text: feces

characteristic: description

text: panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: The stool of giant panda Chengxiao


characteristic: ENA-CHECKLIST

text: Medicum

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Dwarf myovirus fEV-1 that infects Yersinia pestis

text: Yersinia phage fEV-1

characteristic: organism

text: Yersinia phage fEV-1

text: Yersinia phage fEV-1

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DGU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fermentation metagenome

text: fermentation metagenome

text: Anti-hepatosteatosis effect of fermented-Samjunghwan via postbiotic metabolites in HepG2 cells and OLETF rats


text: public

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: collection date

text: foxtail millet

characteristic: common name

text: 36.9 Gb

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: Seedling stage

characteristic: plant developmental stage

text: Nature soil

characteristic: plant growth medium

text: The fourth extending leaf

characteristic: plant structure

text: Setaria italica

text: RNAseq of sistl2


characteristic: ENA-CHECKLIST

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: foxtail millet

text: 36.9 Gb

text: China

text: Setaria italica

characteristic: organism

text: Seedling stage

text: Nature soil

text: The fourth extending leaf

text: Setaria italica

text: RNAseq of sistl2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Barta

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Draft genome of Arthrobacter sp. AM8 isolated from cryoturbated organic matter in permafrost affected soil

characteristic: description

text: terrestrial

characteristic: environment (biome)

text: cryosphere

characteristic: environment (feature)

text: cryosol

characteristic: environment (material)

text: Russia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 72.49 N

text: 101.66 E

text: metagenome

characteristic: investigation type

text: Arthrobacter alpinus

text: MiCryoFun

characteristic: project name

text: Arthrobacter alpinus

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Draft genome of Arthrobacter sp. AM8


characteristic: ENA-CHECKLIST

text: THE ROSLIN INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:THE ROSLIN INSTITUTE

characteristic: Submitter Id

text: Rumen metagenome collected from beef cow at a Scottish abattoir

text: metagenome

characteristic: organism

text: metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ANSES

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: Listeria monocytogenes

characteristic: common name

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

characteristic: isolate

text: Dairy products

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVb

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

text: Rijksuniversiteit Groningen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Rijksuniversiteit Groningen

characteristic: description

text: Marine sponge

characteristic: environment (biome)

text: Seawater

characteristic: environment (feature)

text: Seawater

characteristic: environment (material)

text: Mediterranean Sea

text: 42° 06' 52.6 N

characteristic: geographic location (latitude)

text: 3° 10' 02.0 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Aplysina aerophoba

text: BluePharmTrain

characteristic: project name

text: Aplysina aerophoba

text: PacBio

characteristic: sequencing method

text: PacBio assembly Aplysina aerophoba 16A


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Rijksuniversiteit Groningen

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Marine sponge

text: Seawater

text: Seawater

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

text: 42° 06' 52.6 N

text: 3° 10' 02.0 E

text: host-associated

text: metagenome

text: Aplysina aerophoba

characteristic: organism

text: BluePharmTrain

text: Aplysina aerophoba

text: PacBio

text: PacBio assembly Aplysina aerophoba 21

characteristic: title


characteristic: ENA-CHECKLIST

text: Rijksuniversiteit Groningen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: description

text: Marine sponge

characteristic: environment (biome)

text: Seawater

characteristic: environment (feature)

text: Seawater

characteristic: environment (material)

text: Mediterranean Sea

text: 42° 06' 52.6 N

text: 3° 10' 02.0 E

text: host-associated

text: metagenome

text: Aplysina aerophoba

text: BluePharmTrain

text: Aplysina aerophoba

text: PacBio

text: PacBio assembly Aplysina aerophoba 22A


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rijksuniversiteit Groningen

text: public

text: Marine sponge

text: Seawater

text: Seawater

text: Mediterranean Sea

text: 42° 06' 52.6 N

characteristic: geographic location (latitude)

text: 3° 10' 02.0 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Aplysina aerophoba

text: BluePharmTrain

characteristic: project name

text: Aplysina aerophoba

text: PacBio

characteristic: sequencing method

text: PacBio assembly Aplysina aerophoba 23


characteristic: External Id

text: Rijksuniversiteit Groningen

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Marine sponge

text: Seawater

text: Seawater

text: Mediterranean Sea

characteristic: geographic location (country and/or sea)

text: 42° 06' 52.6 N

text: 3° 10' 02.0 E

text: host-associated

text: metagenome

text: Aplysina aerophoba

characteristic: organism

text: BluePharmTrain

text: Aplysina aerophoba

text: PacBio

text: PacBio assembly Aplysina aerophoba 25

characteristic: title


characteristic: ENA-CHECKLIST

text: Rijksuniversiteit Groningen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Marine sponge

characteristic: environment (biome)

text: Seawater

characteristic: environment (feature)

text: Seawater

characteristic: environment (material)

text: Mediterranean Sea

text: 42° 06' 52.6 N

text: host-associated3° 10' 02.0 E

text: host-associated

text: metagenome

text: Dysidea avara

text: BluePharmTrain

text: Dysidea avara

text: Illumina HiSeq 2000 PE100


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Rijksuniversiteit Groningen

text: public

text: Marine sponge

text: Seawater

text: Seawater

text: Mediterranean Sea

text: 42° 06' 52.6 N

characteristic: geographic location (latitude)

text: host-associated3° 10' 02.0 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Dysidea avara

text: BluePharmTrain

characteristic: project name

text: Dysidea avara

text: Illumina HiSeq 2000 PE100


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


text: Gut bacterium

characteristic: ArrayExpress-PHENOTYPE

text: Klebsiella oxytoca

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

characteristic: organism

text: Gut bacterium

characteristic: phenotype

text: Klebsiella oxytoca

characteristic: title


text: Gut bacterium

text: Enterobacter cloacae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Enterobacter cloacae

text: Enterobacter cloacae

text: Gut bacterium

text: Enterobacter cloacae


text: Gut bacterium

text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Gut bacterium

text: Klebsiella pneumoniae


text: Gut bacterium

text: Enterococcus faecalis

characteristic: External Id

text: SC

text: public

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Gut bacterium

text: Enterococcus faecalis


text: Enterococcus faecalis

text: SC

text: public

characteristic: INSDC status

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Enterococcus faecalis


text: Klebsiella oxytoca

text: SC

text: public

characteristic: SRA accession

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Enterobacter cloacae

text: SC

text: public

characteristic: Submitter Id

text: Enterobacter cloacae

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

tag: Namespace:DEPARTMENT OF MOLECULAR MEDICINE AND MEDICAL BIOTECHNOLOGY

text: human

text: CTRL

characteristic: description

text: DAO

characteristic: gene name

text: Homo sapiens

text: Homo sapiens

text: HIPP

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: DEPARTMENT OF MOLECULAR MEDICINE AND MEDICAL BIOTECHNOLOGY

characteristic: INSDC center name

text: public

text: human

text: CTRL

text: DAO

text: Homo sapiens

text: Homo sapiens

text: HIPP


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: SCZ

text: DAO

text: Homo sapiens

text: Homo sapiens

text: HIPP


text: public

text: human

text: CTRL

text: DAO

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: DLPFC


text: public

text: human

text: SCZ

text: DAO

text: Homo sapiens

text: Homo sapiens

text: DLPFC

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: human

text: CTRL

text: DAO

text: Homo sapiens

text: Homo sapiens

text: CB


characteristic: ENA-LAST-UPDATE

text: public

text: human

text: SCZ

text: DAO

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

text: human

text: CTRL

text: DAOA

text: Homo sapiens

text: Homo sapiens

text: HIPP


text: public

text: human

text: SCZ

text: DAOA

text: Homo sapiens

text: Homo sapiens

text: HIPP


text: public

text: human

text: CTRL

text: DAOA

text: Homo sapiens

text: Homo sapiens

text: DLPFC


text: public

text: human

text: SCZ

text: DAOA

text: Homo sapiens

text: Homo sapiens

text: DLPFC


text: public

text: human

text: CTRL

text: DAOA

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

text: human

text: SCZ

text: DAOA

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

text: human

text: CTRL

text: SR

text: Homo sapiens

text: Homo sapiens

text: HIPP


text: public

text: human

text: SCZ

text: SR

text: Homo sapiens

text: Homo sapiens

text: HIPP


text: public

text: human

text: CTRL

text: SR

text: Homo sapiens

text: Homo sapiens

text: DLPFC


text: public

text: human

text: SCZ

text: SR

text: Homo sapiens

text: Homo sapiens

text: DLPFC


text: public

text: human

text: CTRL

text: SR

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

text: human

text: SCZ

text: SR

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

text: human

text: DDO

text: Homo sapiens

text: Homo sapiens

text: BRAIN


text: public

text: human

text: CTRL

text: DDO

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

text: human

text: SCZ

text: DDO

text: Homo sapiens

text: Homo sapiens

text: CB


text: public

tag: Namespace:Ludwig-Maximilian University of Munich, Department of Earth and Environmental Sciences

text: Niederlibbach, Germany

text: Yes

characteristic: environmental sample

text: uncultured bacterium

text: uncultured bacterium

text: Pond sediments


characteristic: External Id

text: Ludwig-Maximilian University of Munich, Department of Earth and Environmental Sciences

text: public

text: Niederlibbach, Germany

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Pond sediments


text: public

characteristic: INSDC status

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Salt water aquaria


text: public

characteristic: SRA accession

text: Cape Cod, MA

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Salt marsh sediments


text: public

characteristic: Submitter Id

text: Pt Judith, RI

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Salt marsh sediments


text: public

text: Liguria Springs, Italy

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Carbonate biofilms


text: public

text: Obidos lagoon, Portugal

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Sandy beach sediments


text: public

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Marine sponge


text: public

text: Yes

text: bacterium

text: bacterium

text: Mock community


text: public

text: Obidos lagoon, Portugal

text: Yes

text: uncultured bacterium

text: uncultured bacterium

text: Microbial mats


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: UNIVERSITY OF BERN

text: public

tag: Namespace:UNIVERSITY OF BERN

text: Listeria monocytogenes strain JF5203, complete genome

characteristic: description

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-CHECKLIST

text: CHENGDU INSTITUTE OF BIOLOGY

text: public

tag: Namespace:CHENGDU INSTITUTE OF BIOLOGY

characteristic: collection date

text: Diazotrophs

text: Soil

characteristic: environment (biome)

text: Forest

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Diazotrophs in grassland soil of China

characteristic: project name

text: soil metagenome

text: amplicon sequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Diazotrophs in forest soil


Pseudomonas sp. JV241A

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pseudomonas sp. JV241A

characteristic: Submitter Id

characteristic: isolate

text: Pseudomonas sp. JV241A

characteristic: organism

text: Pseudomonas sp. JV241A

text: Pseudomonas sp. JV241A

characteristic: title


Pseudomonas sp. JV551A1

characteristic: ENA-CHECKLIST

text: public

text: Pseudomonas sp. JV551A1

text: Pseudomonas sp. JV551A1

text: Pseudomonas sp. JV551A1

text: Pseudomonas sp. JV551A1


Pseudomonas sp. JV551A3

text: public

text: Pseudomonas sp. JV551A3

text: Pseudomonas sp. JV551A3

text: Pseudomonas sp. JV551A3

text: Pseudomonas sp. JV551A3


Saccharomyces jurei1

text: UOM-BCF

text: public

text: Saccharomyces jurei1

text: Samina Naseeb, Daniela Delneri, Henry McGhie, Bea Gini, Chris Michaels

characteristic: collected by

text: July 2013

characteristic: collection date

text: Saccharomyces jurei D5088 NCYC 3947

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: 1000 m above sea level in the Saint Auban region of south-eastern France

characteristic: geographic location (region and locality)

text: Bark from oak trees (Quercus)

characteristic: isolation source

text: 43 5.2deg N 006 44deg E

characteristic: lat lon

text: Saccharomyces jurei

text: Saccharomyces jurei

text: Saccharomyces jurei genome


text: Staphylococcus aureus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

characteristic: common name

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: subject id


text: Staphylococcus epidermidis

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Staphylococcus epidermidis

text: Staphylococcus epidermidis

characteristic: organism

text: Staphylococcus epidermidis


text: Staphylococcus haemolyticus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

characteristic: title


text: Fusobacterium gonidiaformans

text: SC

text: public

text: Fusobacterium gonidiaformans

text: Fusobacterium gonidiaformans

text: Fusobacterium gonidiaformans


text: Streptococcus uberis

text: SC

text: public

text: Streptococcus uberis

text: Streptococcus uberis

text: Streptococcus uberis


text: Enterococcus hirae

text: SC

text: public

text: Enterococcus hirae

text: Enterococcus hirae

text: Enterococcus hirae


text: E. coli?

text: SC

text: public

text: E. coli?

text: Escherichia coli

text: Escherichia coli


CECT 8962

text: UVEG

text: public

text: CECT 8962

characteristic: collection date

text: Lactobacillus plantarum CECT 8962 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

characteristic: description

text: 2334 m above sea level Quebrada de Humahuaca Plateau of Andean mountain range

characteristic: environment (biome)

text: Maize

characteristic: environment (feature)

text: Chicha, maize-based fermented beverage

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Lactobacillus plantarum

text: Whole genome sequencing of Lactobacillus plantarum CECT 8962

characteristic: project name

text: Lactobacillus plantarum

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8962

characteristic: strain

text: Lactobacillus plantarum CECT 8962


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY COLLEGE LONDON

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: PGP-UK Whole Genome Bissulfide Sequencing Data


CECT 8484

characteristic: ENA-CHECKLIST

text: UVEG

text: public

text: CECT 8484

characteristic: collection date

text: Leuconostoc suionicum CECT 8484 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

characteristic: description

text: 2334 m above sea level. Quebrada de Humahuaca Plateau of Andean mountain range

characteristic: environment (biome)

text: Maize

characteristic: environment (feature)

text: Chicha, maize-based fermented beverage

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: mimarks-survey

text: Leuconostoc mesenteroides subsp. suionicum

characteristic: organism

text: Whole genome sequencing of Leuconostoc suionicum CECT 8484

text: Illumina Miseq

text: CECT 8484

text: Leuconostoc suionicum CECT 8484

characteristic: title


CECT 8486

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

text: public

text: CECT 8486

text: Leuconostoc suionicum CECT 8486 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: Maize

text: Chicha, maize-based fermented beverage

text: Argentina

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Whole genome sequencing of Leuconostoc suionicum CECT 8486

characteristic: project name

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8486

characteristic: strain

text: Leuconostoc suionicum CECT 8486


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Assistance Publique des Hopitaux de Paris (AP-HP), Hopital Robert Debre, Departement de Genetique, Paris, France

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: humanCD45 enriched xenograft samples from NSG or NSG-S xentransplanted mice with JMML CD34+ cells. For secondary xenografts, bone marrow cells from primary engrafted mice were injected in another mouse to test the self-renewal capacities of JMML cells. The bone marrow cells of the primary mice were not sorted before the injection into the secondary recipient because the percentage of human CD45 was high. Qiagen Mini or Midi Kit (Qiagen Gmbh) Exome capture was carried out using the SureSelect Human All Exon V5 or SureSelect Clinical Research (Agilent Technologies, Santa Clara, CA, USA) according to manufacturer’s instruction and protocols.

characteristic: description

text: diabetes and severe combined immunodeficiency

characteristic: disease

text: NSG mouse 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: human CD45 positive

characteristic: phenotype

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Assistance Publique des Hopitaux de Paris (AP-HP), Hopital Robert Debre, Departement de Genetique, Paris, France

characteristic: INSDC center name

text: public

text: ArrayExpress

text: mononuclear cell

text: house mouse

text: NSG mouse 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: human CD45 positive

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: mononuclear cell

text: human

text: juvenile myelomonocytic leukemia

text: diagnosis

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: human CD45 positive

text: primary xenograft

characteristic: sampling time point

text: Homo sapiens

text: NSG

characteristic: xenograft mouse strain


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

characteristic: common name

text: juvenile myelomonocytic leukemia

text: relapse

text: Homo sapiens

text: Homo sapiens

text: human CD45 positive

text: primary xenograft

text: Homo sapiens

text: NSG


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: mononuclear cell

text: human

characteristic: description

text: juvenile myelomonocytic leukemia

characteristic: disease

text: diagnosis

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: human CD45 positive

characteristic: phenotype

text: primary xenograft

text: Homo sapiens

text: NSGS


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: mononuclear cell

text: human

text: juvenile myelomonocytic leukemia

text: relapse

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: human CD45 positive

text: primary xenograft

text: Homo sapiens

characteristic: title

text: NSGS


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: mononuclear cell

text: human

text: juvenile myelomonocytic leukemia

text: diagnosis

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: human CD45 positive

text: secondary xenograft

characteristic: sampling time point

text: Homo sapiens

text: NSG

characteristic: xenograft mouse strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mononuclear cell

characteristic: cell type

text: human

characteristic: common name

text: juvenile myelomonocytic leukemia

text: diagnosis

text: Homo sapiens

text: Homo sapiens

text: human CD45 positive

text: secondary xenograft

text: Homo sapiens

text: NSGS


characteristic: ENA-CHECKLIST

characteristic: External Id

text: GURDON INSTITUTE

text: public

text: SX1316 mjIs144 II ; unc-119(ed3) III - 1

tag: Namespace:GURDON INSTITUTE

text: TruSeq Small RNA Library from polyphosphatase treated total RNA from whole 1 day old adults

characteristic: description

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


text: GURDON INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SX1316 mjIs144 II ; unc-119(ed3) III - 2

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


SX1636 mut-16(pk710) I ; mjIs144 II - 1

text: GURDON INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SX1636 mut-16(pk710) I ; mjIs144 II - 1

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries

characteristic: title


SX1636 mut-16(pk710) I ; mjIs144 II - 2

text: GURDON INSTITUTE

text: public

characteristic: SRA accession

text: SX1636 mut-16(pk710) I ; mjIs144 II - 2

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


SX1888 prg-1(n4357) I ; mjIs144 II - 1

text: GURDON INSTITUTE

text: public

text: SX1888 prg-1(n4357) I ; mjIs144 II - 1

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


SX1888 prg-1(n4357) I ; mjIs144 II - 2

text: GURDON INSTITUTE

text: public

text: SX1888 prg-1(n4357) I ; mjIs144 II - 2

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


SX3169 deps-1(bn124) I mjIs144 II - 1

text: GURDON INSTITUTE

text: public

text: SX3169 deps-1(bn124) I mjIs144 II - 1

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


SX3170 deps-1(bn124) I mjIs144 II - 1

text: GURDON INSTITUTE

text: public

text: SX3170 deps-1(bn124) I mjIs144 II - 1

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: 5' independent small RNA libraries


CECT 9216

text: UVEG

text: public

text: CECT 9216

characteristic: collection date

text: Leuconostoc suionicum CECT 9216 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: 2334m above sea level Quebrada de Humahuaca Plateau of Andean mountain range

characteristic: environment (biome)

text: Maize

characteristic: environment (feature)

text: Chicha, maize-based fermented beverage

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Whole genome sequencing of Leuconostoc suionicum CECT 9216

characteristic: project name

text: Illumina Miseq

characteristic: sequencing method

text: CECT 9216

characteristic: strain

text: Leuconostoc suionicum CECT 9216


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPSC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: fission yeast

characteristic: common name

text: Control biological replicate 1

characteristic: description

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe


text: UPSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fission yeast

text: Control biological replicate 2

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: title


text: UPSC

text: public

text: fission yeast

text: Control biological replicate 3

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Pfh1-depleted biological replicate 1

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Pfh1-depleted biological replicate 2

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Pfh1-depleted biological replicate 3

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Pfh1-depleted Top1D biological replicate 1

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Pfh1-depleted Top1D biological replicate 2

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Pfh1-depleted Top1D biological replicate 3

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Top1D biological replicate 1

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Top1D biological replicate 2

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: UPSC

text: public

text: fission yeast

text: Top1D biological replicate 3

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: public

tag: Namespace:ROSLIN INSTITUTE, UNIVERSITY OF EDINBURGH

text: chicken

text: RNA was extracted from an adult female broiler chicken ovary. 5' cap selection (Teloprime) and normalization (column) was performed on the library. The resulting cDNA was size selected for 0-2kb, 2-4kb, and >4kb parts. Each part was then prepared for Pacbio Iso-Seq sequencing. 3 SMRT cells were used for the 0-2kb library. 3 SMRT cells were used for the 2-4kb library. 4 SMRT cells were used for the >4kb library. These were sequenced on an RSII machine. The resulting raw data was converted into bam format then converted into CCS reads using default parameters of the SMRT Package Iso-Seq pipeline. The CCS reads were then filtered for full length non-chimeric reads using the classify module of the Iso-Seq pipeline. The fasta file submitted represents the results from the classify output.

text: Adult

characteristic: dev stage

text: Gallus gallus

text: Gallus gallus

text: Female

characteristic: sex

text: Ovary

characteristic: tissue type

text: Iso-Seq with 5' cap selection and normalization on adult chicken ovary tissue.


characteristic: ENA-CHECKLIST

text: PNRI

text: public

text: Candida albicans

text: Candida albicans


characteristic: ENA-FIRST-PUBLIC

text: CNGB

text: public

text: CNSA

characteristic: broker name

text: Samples were collected in D. jenkinsiana (N: 23º11′29″, E: 113º22′40″, 87 M). The young leaves at the vegetative growth stage were used to construct DNA library

text: vegetative growth stage

text: Guangzhou, Guangdong Province, China

characteristic: geo loc name

text: Ecotype

characteristic: isolate

text: Daemonorops jenkinsiana

text: Daemonorops jenkinsiana

text: leaf

characteristic: tissue


CECT 8965

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CECT 8965

characteristic: Submitter Id

characteristic: collection date

text: Lactobacillus plantarum CECT 8965 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: 2334 m above sea level. Quebrada de Humahuaca Plateau of Andean mountain range

characteristic: environment (biome)

text: Maize

characteristic: environment (feature)

text: Chicha, maize-based fermented beverage

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Lactobacillus plantarum

text: Whole genome sequencing of Lactobacillus plantarum CECT 8965

characteristic: project name

text: Lactobacillus plantarum

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8965

characteristic: strain

text: Lactobacillus plantarum CECT 8965


CECT 8963

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UVEG

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 8963

text: Lactobacillus plantarum CECT 8963 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

characteristic: description

text: Maize

text: Chicha, maize-based fermented beverage

text: Argentina

text: mimarks-survey

text: Lactobacillus plantarum

characteristic: organism

text: Whole genome sequencing of Lactobacillus plantarum CECT 8963

text: Lactobacillus plantarum

text: Illumina Miseq

text: CECT 8963

text: Lactobacillus plantarum CECT 8963

characteristic: title


CECT 8964

characteristic: External Id

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CECT 8964

characteristic: Submitter Id

characteristic: collection date

text: Lactobacillus plantarum CECT 8964 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

characteristic: environment (biome)

text: Maize

characteristic: environment (feature)

text: Chicha, maize-based fermented beverage

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: Lactobacillus plantarum

text: Whole genome sequencing of Lactobacillus plantarum CECT 8964

text: Lactobacillus plantarum

text: Illumina Miseq

text: CECT 8964

text: Lactobacillus plantarum CECT 8964


CECT 8966

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UVEG

text: public

text: CECT 8966

text: Lactobacillus plantarum CECT 8966 was isolated from chicha, a traditional maize-based fermented alcoholic beverage from Northwestern Argentina, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: Maize

text: Chicha, maize-based fermented beverage

text: Argentina

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Lactobacillus plantarum

text: Whole genome sequencing of Lactobacillus plantarum CECT 8966

characteristic: project name

text: Lactobacillus plantarum

text: Illumina Miseq

characteristic: sequencing method

text: CECT 8966

characteristic: strain

text: Lactobacillus plantarum CECT 8966


text: Cell Line

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Cell Line

characteristic: phenotype

text: Homo sapiens

characteristic: subject id

characteristic: title


text: female

characteristic: ArrayExpress-SEX

text: Tasmanian devil

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Tasmanian devil

text: Female

characteristic: gender

text: Sarcophilus harrisii

text: Sarcophilus harrisii


text: Tasmanian devil

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Tasmanian devil

text: Sarcophilus harrisii

text: Sarcophilus harrisii


text: male

text: Tasmanian devil

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Tasmanian devil

text: Male

text: Sarcophilus harrisii

text: Sarcophilus harrisii


Brine A

text: VRIJE UNIVERSITEIT BRUSSEL

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brine A

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: brine sampled at a artisan cheese producer

characteristic: description

text: metagenome

text: metagenome

text: cheese brine


Brine C

tag: attribute

text: VRIJE UNIVERSITEIT BRUSSEL

text: public

characteristic: SRA accession

text: Brine C

text: brine sampled at a large-scale cheese manufacturer

text: metagenome

characteristic: organism

text: metagenome

text: cheese brine


text: DC

text: female

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Female

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: DC

text: female

characteristic: ArrayExpress-SEX

text: Rattus norvegicus

text: SC

text: public

text: Norway rat

text: Female

text: Rattus norvegicus

text: Rattus norvegicus

characteristic: title


E-MTAB-6504:IDS1 OE IP-rep1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6504:IDS1 OE IP-rep1

tag: Namespace:National Key Facility of Crop Gene Resources and Genetic Improvement,  Biotechnology Research Institute, Chinese Academy of Agricultural Sciences

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Protocols: The Nipponbare and its transgenic line generated from the transformation of ProUbi:IDS1-myc, wild-type DJ and ids1-1 mutant were used for ChIP assays (26). 4 g of 4-week-old seedlings were harvested. Plant materials were cross-linked with 1% (v/v) formaldehyde under vacuum for 10 min. The rice plants were grown in the greenhouse with a 12-h-light/12-h-dark cycle at 25 to 30 ºC. The powdered samples were performed nucleus isolation and sonication and then incubated with different antibodies, including anti-c-myc antibodies (Roche, 11667149001)with protein G magnetic beads (Invitrogen, 10003D) together. The DNA was precipitated and stored at -80 ºC. For ChIP-seq, the isolated DNA sample was fragmented and amplified for 14 cycles, and then DNA fragments of 100 to 500 bp were purified for construction of sequencing library.

text: seedling development stage

characteristic: developmental stage

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: technical replicate

characteristic: replicate

text: Oryza sativa Japonica Group

text: IDS1 OE IP-rep1


E-MTAB-6504:IDS1 OE IP-rep2

characteristic: ENA-LAST-UPDATE

text: National Key Facility of Crop Gene Resources and Genetic Improvement, Biotechnology Research Institute, Chinese Academy of Agricultural Sciences

characteristic: INSDC first public

text: public

text: E-MTAB-6504:IDS1 OE IP-rep2

characteristic: Submitter Id

text: ArrayExpress

text: Japanese rice

text: seedling development stage

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: technical replicate

text: Oryza sativa Japonica Group

text: IDS1 OE IP-rep2


E-MTAB-6504:IDS1 OE IP-rep3

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: E-MTAB-6504:IDS1 OE IP-rep3

text: ArrayExpress

text: Japanese rice

text: seedling development stage

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: technical replicate

text: Oryza sativa Japonica Group

text: IDS1 OE IP-rep3


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: Japanese rice

characteristic: description

text: seedling development stage

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: input


CECT 9217

text: UVEG

text: public

text: CECT 9217

characteristic: collection date

text: Leuconostoc mesenteroides CECT 9217 was isolated from tocosh, Peruvian traditional fermented potatoes, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: 2500 m above sea level. Temperature variation between day and night. Highlands of Central Peruvian Andes

characteristic: environment (biome)

text: Potatoes

characteristic: environment (feature)

text: Tocosh, potatoes naturally fermented in a well near a water spring

characteristic: environment (material)

text: Peru

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Leuconostoc mesenteroides

characteristic: organism

text: Whole genome sequencing of Leuconostoc mesenteroides CECT 9217

characteristic: project name

text: Leuconostoc mesenteroides

text: Illumina Miseq

characteristic: sequencing method

text: CECT 9217

characteristic: strain

text: Leuconostoc mesenteroides CECT 9217


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Male

characteristic: gender

text: Mus musculus

text: Mouse

characteristic: phenotype

text: Mus musculus

characteristic: subject id

characteristic: title


CECT 9266

text: UVEG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 9266

characteristic: collection date

text: Leuconostoc mesenteroides CECT 9266 was isolated from tocosh, Peruvian traditional fermented potatoes, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

characteristic: description

text: Temperature variation between day and night. Highlands of Central Peruvian Andes

characteristic: environment (biome)

text: Potatoes

characteristic: environment (feature)

characteristic: environment (material)

text: Peru

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Leuconostoc mesenteroides

characteristic: organism

text: Whole genome sequencing of Leuconostoc mesenteroides CECT 9266

characteristic: project name

text: Leuconostoc mesenteroides

text: Illumina Miseq

characteristic: sequencing method

text: CECT 9266

characteristic: strain

text: Leuconostoc mesenteroides CECT 9266


CECT 9268

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CECT 9268

characteristic: Submitter Id

text: Leuconostoc mesenteroides CECT 9268 was isolated from tocosh, Peruvian traditional fermented potatoes, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: Potatoes

text: Peru

text: mimarks-survey

text: miscellaneous natural or artificial environment

text: Leuconostoc mesenteroides

text: Whole genome sequencing of Leuconostoc mesenteroides CECT 9268

text: Leuconostoc mesenteroides

text: Illumina Miseq

text: CECT 9268

text: Leuconostoc mesenteroides CECT 9268

characteristic: title


CECT 9269

text: UVEG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CECT 9269

characteristic: collection date

text: Lactobacillus fermentum CECT 9269 was isolated from tocosh, Peruvian traditional fermented potatoes, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

characteristic: description

characteristic: environment (biome)

text: Potatoes

characteristic: environment (feature)

characteristic: environment (material)

text: Peru

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: mimarks-survey

text: Lactobacillus fermentum

text: Whole genome sequencing of Lactobacillus fermentum CECT 9269

text: Lactobacillus fermentum

text: Illumina Miseq

text: CECT 9269

text: Lactobacillus fermentum CECT 9269


CECT 9267

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UVEG

text: public

text: CECT 9267

text: Lactobacillus sakei CECT 9267 was isolated from tocosh, Peruvian traditional fermented potatoes, and has been investigated for its high biotechnological potential in the frame of project Microandes that targeted traditional fermented Andean products of vegetal origin

text: Potatoes

text: Peru

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: Lactobacillus sakei

characteristic: organism

text: Whole genome sequencing of Lactobacillus sakei CECT 9267

characteristic: project name

text: Lactobacillus sakei

text: Illumina Miseq

characteristic: sequencing method

text: CECT 9267

characteristic: strain

text: Lactobacillus sakei CECT 9267


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: female mosquito from Binh Duong Vietnam

text: metagenome

text: metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: female mosquito from Ho Chi Minh City Vietnam

characteristic: description

text: metagenome

text: metagenome


text: public

text: female mosquito from Mananjary Madagascar

text: metagenome

text: metagenome


text: public

text: female mosquito from Nice France

text: metagenome

text: metagenome


Neg

text: public

text: Neg

text: negative control

text: metagenome

text: metagenome

text: Neg


text: public

text: female mosquito from Portes les Valence France

text: metagenome

text: metagenome


text: public

text: female mosquito from Saint Priest France

text: metagenome

text: metagenome


text: public

text: female mosquito from Toamasina Madagascar

text: metagenome

text: metagenome


text: public

text: female mosquito from Tsimbazaza Park Madagascar

text: metagenome

text: metagenome


text: public

text: female mosquito from Vung Tau City Vietnam

text: metagenome

text: metagenome


text: public

tag: Namespace:Institute of Microbiology and Infection School of Biosciences University of Birmingham

text: ArrayExpress

characteristic: broker name

text: Protocols: The Vibrio cholerae O1 El Tor strain N16961 was isolated in 1971 in Bangladesh. Cells were grown in liquid M9 minimal medium at 37 degrees with shaking Immunoprecipitations were done as described by Haycocks et al. (PLoS Pathog. 2015. 11:e1004605) using Vibrio cholerae strain N16961. After growing cells to midlog phase, crosslinking, and sonication, protein DNA complexes were immunoprecipitated using anti-sigma70, anti-CRP or no antibody as a control. Anti-sigma70 was purchased from Neoclone (Madison, USA). Anti-CRP was as described previously (Greinger et al. 2005. Proc. Natl. Acad. Sci. USA. 102:17693-8.). Libraries were prepared using immunoprecipited protein-DNA complexes immobilised with Protein A-sepharose. DNA fragments were then blunt ended, A-tailed and barcoded. This was done using an NEB quick blunting and ligation kit, the Klenow fragment (5’-3’ exo-, NEB) and NEXTflex ChIP-seq barcodes (Bioo Scientific). Following elution of complexes from the Protein-A sepharose, crosslinks were reversed and barcoded libraries were amplified by PCR. The number of PCR cycles was determined empirically for each library. After amplification, library concentration was quantified using Qubit analysis and real time PCR.

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae


text: Institute of Microbiology and Infection School of Biosciences University of Birmingham

text: public

text: ArrayExpress

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

text: Vibrio cholerae


text: public

tag: Namespace:CENTER FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: The donkey named Willy was an animal at Copenhagen Zoo.

text: Equus asinus africanus

text: Equus asinus africanus

text: Willy donkey


text: UCA

text: public

characteristic: collection date

text: derivative of pKPS30 (NC_023314.1)

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DHA-1 mediating plasmid


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: derivative of pKPS30 (NC_023314.1)

text: France

text: diseased

text: homo sapiens

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DHA-1 mediating plasmid


text: UCA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: derivative of pKPS30 (NC_023314.1)

text: France

text: diseased

text: homo sapiens

text: pus

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DHA-1 mediating plasmid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCA

text: public

text: IncL/M

characteristic: description

text: France

text: diseased

text: homo sapiens

text: blood

text: Klebsiella variicola

text: Klebsiella variicola

text: DHA-1 mediating plasmid

characteristic: title


text: UCA

text: public

characteristic: collection date

text: IncL/M

text: France

characteristic: geographic location (country and/or sea)

text: homo sapiens

text: rectum

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: DHA-1 mediating plasmid


text: UCA

text: public

text: France

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DHA-1 producing Klebsiella pneumoniae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCA

text: public

text: IncHI2, plasmid of CNR48

text: France

text: diseased

text: homo sapiens

text: urine

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: DHA-1 mediating plasmid


text: UCA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: derivative of pUUH239.2 (Accession: CP002474.1), plasmid of CNR48

text: France

text: diseased

text: homo sapiens

text: urine

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: CTX-M-15 mediating plasmid


text: GUH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: terrestrial biome

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: France

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: VoyagR

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method


January

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: January

tag: Namespace:TEAGASC FOOD RESEARCH CENTRE

text: food metagenome

characteristic: organism

text: food metagenome

text: spore-former metagenome from whey

characteristic: title


February

text: TEAGASC FOOD RESEARCH CENTRE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: February

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


March

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: March

characteristic: Submitter Id

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


April

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: April

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


May

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: May

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


June

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: June

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


July

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: July

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


A.M

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: A.M

text: food metagenome

text: food metagenome

text: spore-former metagenome from whey


A.M.P

text: TEAGASC FOOD RESEARCH CENTRE

text: public

text: A.M.P

text: food metagenome

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