text: public

tag: Namespace:Dept. of Microbiology and Immunology University of Gothenburg

unit: year

characteristic: age

text: ArrayExpress

text: human

text: Protocols: Gastric biopsies taken at endoscopy RNeasy mini kit, Qiagen ScriptSeq v2 RNAseq library preparation

characteristic: description

text: Atrophy

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dept. of Microbiology and Immunology University of Gothenburg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Atrophy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

type: has member


text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: Extensive atrophy

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


text: public

text: ArrayExpress

text: human

text: Gastritis

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: Atrophy

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: Extensive atrophy

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: normal

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male


text: public

characteristic: SRA accession

tag: Namespace:German Cancer Consortium (DKTK) and Cancer Genome Research Group, German Cancer Research Center (DKFZ)

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: PC-3 cells were treated with pREP4_pre-miR-375 expression vector or pREP4 empty vector as a control using Extreme Gene HP (Roche) Purified RNA of TL, Ago and IgG IP fractions was quantified using NanoDrop spectrometer and quality was assessed by Agilent capillary electrophoresis using RNA picoChips. 10 ng of RNA was DNaseI (Qiagen) treated and rRNA depleted by RiboZero (Epicentre). Then, sequencing libraries were generated with the SMARTer Stranded Total RNA Sample Prep Kit (Takara Clontech). Enrichment and size distribution of the libraries were quality-assessed by Agilent capillary electrophoresis on a DNA high sensitivity chip (Agilent). For sequencing, all six samples of one replicate of an IP experiment (TL, Ago-IP, IgG-IP fraction of PC-3 miR-375 and PC-3 vector, respectively) were pooled to generate a fincal concentration of 5nM per lane.

text: metastatic prostate cancer

characteristic: disease

text: Ago control I

characteristic: fraction

text: empty vector

characteristic: genotype

text: Ago

characteristic: immunoprecipitate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: German Cancer Consortium (DKTK) and Cancer Genome Research Group, German Cancer Research Center (DKFZ)

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: metastatic prostate cancer

text: Ago control II

text: empty vector

text: Ago

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: Ago control III

text: empty vector

text: Ago

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: Ago miR-375 I

text: Ago

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: metastatic prostate cancer

text: Ago miR-375 II

text: Ago

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

characteristic: disease

text: Ago miR-375 III

characteristic: fraction

characteristic: genotype

text: Ago

characteristic: immunoprecipitate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: metastatic prostate cancer

text: IgG control I

text: empty vector

text: IgG

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: IgG control II

text: empty vector

text: IgG

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: IgG control III

text: empty vector

text: IgG

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: metastatic prostate cancer

text: IgG miR-375 I

text: IgG

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

characteristic: disease

text: IgG miR-375 II

characteristic: fraction

characteristic: genotype

text: IgG

characteristic: immunoprecipitate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: metastatic prostate cancer

text: IgG miR-375 III

text: IgG

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: total lysate control I

text: empty vector

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: total lysate control II

text: empty vector

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: metastatic prostate cancer

text: total lysate control III

text: empty vector

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

characteristic: disease

text: total lysate miR-375 I

characteristic: fraction

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: metastatic prostate cancer

text: total lysate miR-375 II

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: human

text: metastatic prostate cancer

text: total lysate miR-375 III

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UT-IEES

text: public

text: TACG

characteristic: adapters

characteristic: collection date

text: bugle

text: plant roots

text: temperate broadleaf and mixed forest

characteristic: environment (biome)

text: atlantic broadleaf forest

characteristic: environment (feature)

text: plant roots

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: St Martin, Biarritz

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: AGAGTGTG

characteristic: multiplex identifiers

text: Ajuga reptans

text: TTGGAGGGCAAGTCTGGTGCC

characteristic: pcr primers

text: plant-associated

characteristic: plant-associated environmental package

text: Continental

characteristic: project name

text: Ajuga reptans

text: 454 GS FLX Titanium

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UT-IEES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TACG

characteristic: adapters

text: dog's mercury

characteristic: common name

text: plant roots

characteristic: description

text: temperate broadleaf and mixed forest

text: atlantic broadleaf forest

text: plant roots

text: France

text: Madirac, Bordeaux

text: mimarks-survey

text: ACTCACTC

text: Mercurialis perennis

characteristic: organism

text: TTGGAGGGCAAGTCTGGTGCC

text: plant-associated

text: Continental

text: Mercurialis perennis

text: 454 GS FLX Titanium


text: UT-IEES

text: public

text: TACG

characteristic: collection date

text: narrow-leaved plantain

text: plant roots

text: temperate seminatural grassland

characteristic: environment (biome)

text: wooded meadow

characteristic: environment (feature)

text: plant roots

characteristic: environment (material)

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Laelatu

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: CTGTCTCA

characteristic: multiplex identifiers

text: Plantago lanceolata

text: TTGGAGGGCAAGTCTGGTGCC

characteristic: pcr primers

text: plant-associated

characteristic: plant-associated environmental package

text: Continental

characteristic: project name

text: Plantago lanceolata

text: 454 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UT-IEES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TACG

characteristic: adapters

text: narrow-leaved plantain

characteristic: common name

text: plant roots

text: temperate seminatural grassland

text: wooded meadow

text: plant roots

text: Estonia

text: Laelatu

text: mimarks-survey

text: TACGCGTA

text: Plantago lanceolata

text: TTGGAGGGCAAGTCTGGTGCC

text: plant-associated

text: Continental

text: Plantago lanceolata

text: 454 GS FLX Titanium

characteristic: sequencing method

characteristic: title


text: UT-IEES

text: public

text: TACG

characteristic: collection date

text: narrow-leaved plantain

text: plant roots

characteristic: description

text: temperate seminatural grassland

characteristic: environment (biome)

text: wooded meadow

characteristic: environment (feature)

text: plant roots

characteristic: environment (material)

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Laelatu

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: CTGTGACA

characteristic: multiplex identifiers

text: Plantago lanceolata

characteristic: organism

text: TTGGAGGGCAAGTCTGGTGCC

characteristic: pcr primers

text: plant-associated

text: Continental

text: Plantago lanceolata

text: 454 GS FLX Titanium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UT-IEES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TACG

characteristic: adapters

text: narrow-leaved plantain

characteristic: common name

text: plant roots

text: temperate seminatural grassland

text: wooded meadow

text: plant roots

text: Estonia

text: Laelatu

text: mimarks-survey

text: CTGTCTGT

text: Plantago lanceolata

text: TTGGAGGGCAAGTCTGGTGCC

text: plant-associated

characteristic: plant-associated environmental package

text: Continental

characteristic: project name

text: Plantago lanceolata

text: 454 GS FLX Titanium


text: UT-IEES

text: public

text: TACG

characteristic: collection date

text: narrow-leaved plantain

text: plant roots

characteristic: description

text: temperate seminatural grassland

characteristic: environment (biome)

text: wooded meadow

characteristic: environment (feature)

text: plant roots

characteristic: environment (material)

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Laelatu

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: TACGCGAT

characteristic: multiplex identifiers

text: Plantago lanceolata

text: TTGGAGGGCAAGTCTGGTGCC

text: plant-associated

text: Continental

text: Plantago lanceolata

text: 454 GS FLX Titanium

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UT-IEES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: TACG

characteristic: adapters

text: self-heal

characteristic: common name

text: plant roots

text: temperate seminatural grassland

text: wooded meadow

text: plant roots

text: Estonia

text: Laelatu

text: mimarks-survey

text: CTGTGAGT

text: Prunella vulgaris

characteristic: organism

text: TTGGAGGGCAAGTCTGGTGCC

characteristic: pcr primers

text: plant-associated

text: Continental

text: Prunella vulgaris

text: 454 GS FLX Titanium


text: University of Manchester

text: public

tag: Namespace:University of Manchester

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: osteosarcoma

characteristic: cell type

text: human

text: Protocols: 'The human osteosarcoma U2OS cells were grown in DMEM supplement with 10% foetal bovine serum for 24h, then cells were transfected for 48 hours with ON-TARGETplus Non-targeting Pool (Dharmacon D-001810-10) using Lipofectamine RNAiMax (Life technologies) according to manufacturer''s protocol. Cells were cross-linked with 1% Formaldehyde for 10 minutes.' After reverse cross-link and protein digestion with Proteinase K (Roche), DNA was purified using Qiaquick, PCR purification kit (Qiagen) following the manufacturer’s instructions. ChIP-seq was performed as described in Schmidt et al., 2009, using 10 x 106 U2OS. Immuno-precipitation was performed overnight at 4° C by incubating the shared DNA-protein complex with 10 μg of anti-H3K18Ac (Abcam AB1191 ) antibodies previously coupled to Dynabeads protein G (Invitrogen). Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT. (2009) ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48: 240-248.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Biochemistry University of Cambridge

text: ArrayExpress

text: fission yeast

text: Protocols: 200 ml of cells were grown at 32C to a density of 1E7 cells/ml 'Cells were fixed by the addition of formaldehyde to a final concentration of 1%, followed by incubation for 30 minutes at 32°C. The reaction was stopped with 10 ml of 2.5 M glycine. Cells were washed extensively in phosphate-buffered saline solution (PBS), resuspended in lysis buffer (50 mM HEPES pH 7.6, 140 mM NaCl, 1 mM EDTA, 0.1% Triton X-100, 1 mM PMSF, and 1× complete protease inhibitor cocktail [Roche]), and lysed with a Fastprep 24 bead-beater (5 cycles of 20 seconds at level 6.5). Chromatin was sheared by sonication with a Bioruptor (Diagenode; 6 cycles of 5 minutes with 30 seconds on / 30 seconds off at high intensity). The lysates were cleared by centrifugation at 20,000 g for 10 minutes, and adjusted to 500 μl at 6 μg/μl total protein, as determined by the BCA assay. 100 μl of magnetic beads (Pan Mouse IgG or protein G, Life Technologies) were blocked with bovine serum albumin (BSA), and coated with 5 μg of mouse monoclonal antibodies against methylated H3K9 (H3K9me2, Abcam ab1120) or with anti-histone H3 rabbit polyclonal antibodies (Abcam ab1791), respectively. The extracts were incubated overnight with the coated beads at 4°C with rotation. Next, the beads were washed twice with 0.8 ml of 50 mM HEPES pH 7.6, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, and 0.1% sodium deoxycholate, twice in the same buffer containing 500 mM NaCl, twice in 10 mM Tris-HCl pH 8, 250 mM LiCl, 1 mM EDTA, 0.5% NP-40, and 0.5% sodium deoxycholate, and once in Tris-EDTA solution. Elution and crosslinking reversal were performed by incubating the beads in 200 μl of 10 mM Tris-HCl pH 8, 1 mM EDTA, and 1% SDS overnight at 65°C. DNA was purified with Qiagen''s a MinElute PCR purification kit (Qiagen) following the manufacturer’s protocol, and eluted in 10 μl.' Libraries were prepared using the Next ChIP-seq Library Prep Master Mix Set for Illumina (New England Biolabs) according to the manufacturer’s instructions

text: Ccr4 mutant

characteristic: genotype

characteristic: immunoprecipitate

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: title


characteristic: External Id

text: Department of Biochemistry University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fission yeast

text: wild type genotype

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fission yeast

characteristic: common name

text: wild type genotype

text: Schizosaccharomyces pombe

characteristic: organism

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: wildtype


E-MTAB-3710:Sample 1

text: public

text: E-MTAB-3710:Sample 1

tag: Namespace:Tianjin Medical University Cancer Institute and Hospital

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: DMEM with 10% FBS Oligo (dT) are used to isolate mRNA(for eukaryotes) or by removing rRNAs from the total RNA (for prokaryotes). Mixed with the fragmentation buffer, the mRNA is fragmented into short fragments. Then cDNA is synthesized using the mRNA fragments as templates. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. After agarose gel electrophoresis, the suitable fragments are selected for the PCR amplification as templates. During the QC steps, Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR System are used in quantification and qualification of the sample library. At last, the library could be sequenced using Illumina HiSeqTM 2000 or other sequencer when necessary. Total RNA of cells was extracted by Trizol (Invitrogen) The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3prime to 5prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: description

text: lentiviral transduction

characteristic: genetic modification

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1


E-MTAB-3710:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Tianjin Medical University Cancer Institute and Hospital

text: public

text: E-MTAB-3710:Sample 2

text: ArrayExpress

text: human

text: lentiviral transduction

text: IL-35 overexpression

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-3708:Sample 16

text: public

text: E-MTAB-3708:Sample 16

tag: Namespace:School of Computer Sciences University of Birmingham

characteristic: age

text: ArrayExpress

text: human

text: Protocols: 10 Âľm sections of formalin-fixed paraffin embedded tissue with histological diagnosis of WHO grade 2 astrocytoma, oligodendroglioma or oligo-astrocytoma were obtained through the Human Biomaterials Resource Centre at the University of Birmingham, UK under application 13-137. RNA was extracted using an FFPE RNA kit as per manufacturerâs instructions. FFPE RNA kit NEBNext mRNA Library kit

text: oligodendroglioma

characteristic: disease

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: Sample 16

characteristic: title


E-MTAB-3708:Sample 17

characteristic: External Id

text: School of Computer Sciences University of Birmingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3708:Sample 17

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 17


E-MTAB-3708:Sample 19

text: public

characteristic: SRA accession

text: E-MTAB-3708:Sample 19

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: astrocytoma

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 19


E-MTAB-3708:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3708:Sample 2

text: ArrayExpress

text: human

characteristic: description

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 2


E-MTAB-3708:Sample 20

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 20

characteristic: age

text: ArrayExpress

text: human

text: astrocytoma

characteristic: disease

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 20


E-MTAB-3708:Sample 22

text: public

text: E-MTAB-3708:Sample 22

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Sample 22

characteristic: title


E-MTAB-3708:Sample 23

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3708:Sample 23

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 23


E-MTAB-3708:Sample 24

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3708:Sample 24

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 24


E-MTAB-3708:Sample 26

text: public

text: E-MTAB-3708:Sample 26

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 26


E-MTAB-3708:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3708:Sample 27

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 27


E-MTAB-3708:Sample 29

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 29

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 29


E-MTAB-3708:Sample 31

text: public

text: E-MTAB-3708:Sample 31

text: ArrayExpress

text: human

text: oligodendroglioma

characteristic: disease

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

characteristic: sex

text: Sample 31


E-MTAB-3708:Sample 32

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-3708:Sample 32

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 32

characteristic: title


E-MTAB-3708:Sample 34

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3708:Sample 34

text: ArrayExpress

text: human

text: oligoastrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 34


E-MTAB-3708:Sample 35

text: public

characteristic: SRA accession

text: E-MTAB-3708:Sample 35

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 35


E-MTAB-3708:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3708:Sample 36

text: ArrayExpress

text: human

characteristic: common name

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 36


E-MTAB-3708:Sample 37

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 37

characteristic: age

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 37


E-MTAB-3708:Sample 39

text: public

text: E-MTAB-3708:Sample 39

text: ArrayExpress

text: human

characteristic: description

text: oligoastrocytoma

characteristic: disease

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 39


E-MTAB-3708:Sample 4

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-3708:Sample 4

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


E-MTAB-3708:Sample 40

characteristic: INSDC first public

text: public

text: E-MTAB-3708:Sample 40

text: ArrayExpress

text: human

text: oligoastrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Sample 40

characteristic: title


E-MTAB-3708:Sample 41

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3708:Sample 41

text: ArrayExpress

text: human

text: oligoastrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 41


E-MTAB-3708:Sample 42

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3708:Sample 42

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 42


E-MTAB-3708:Sample 43

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 43

text: ArrayExpress

text: human

characteristic: common name

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 43


E-MTAB-3708:Sample 45

text: public

text: E-MTAB-3708:Sample 45

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: astrocytoma

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 45


E-MTAB-3708:Sample 46

characteristic: External Id

text: public

text: E-MTAB-3708:Sample 46

text: ArrayExpress

text: human

text: oligoastrocytoma

characteristic: disease

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 46


E-MTAB-3708:Sample 49

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3708:Sample 49

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Sample 49


E-MTAB-3708:Sample 50

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3708:Sample 50

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 50

characteristic: title


E-MTAB-3708:Sample 51

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-3708:Sample 51

characteristic: Submitter Id

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 51


E-MTAB-3708:Sample 52

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 52

text: ArrayExpress

characteristic: broker name

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 52


E-MTAB-3708:Sample 53

text: public

text: E-MTAB-3708:Sample 53

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 53


E-MTAB-3708:Sample 54

characteristic: External Id

text: public

text: E-MTAB-3708:Sample 54

text: ArrayExpress

text: human

text: oligodendroglioma

characteristic: disease

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 54


E-MTAB-3708:Sample 55

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3708:Sample 55

text: ArrayExpress

text: human

text: oligoastrocytoma

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 55


E-MTAB-3708:Sample 56

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3708:Sample 56

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Sample 56


E-MTAB-3708:Sample 57

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-3708:Sample 57

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 57

characteristic: title


E-MTAB-3708:Sample 59

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 59

characteristic: Submitter Id

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 59


E-MTAB-3708:Sample 60

text: public

text: E-MTAB-3708:Sample 60

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: oligoastrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 60


E-MTAB-3708:Sample 61

characteristic: External Id

text: public

text: E-MTAB-3708:Sample 61

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 61


E-MTAB-3708:Sample 62

characteristic: INSDC center name

text: public

text: E-MTAB-3708:Sample 62

text: ArrayExpress

text: human

text: astrocytoma

characteristic: disease

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 62


E-MTAB-3708:Sample 63

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3708:Sample 63

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 63


E-MTAB-3708:Sample 65

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

text: E-MTAB-3708:Sample 65

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Sample 65


E-MTAB-3708:Sample 67

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-3708:Sample 67

text: ArrayExpress

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 67

characteristic: title


E-MTAB-3708:Sample 68

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3708:Sample 68

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: oligodendroglioma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 68


E-MTAB-3708:Sample 69

characteristic: External Id

text: public

text: E-MTAB-3708:Sample 69

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: astrocytoma

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 69


E-MTAB-3708:Sample 7

characteristic: INSDC center name

text: public

text: E-MTAB-3708:Sample 7

text: ArrayExpress

text: human

characteristic: description

text: astrocytoma

characteristic: disease

text: Grade 2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 7


E-MTAB-3708:Sample 8

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3708:Sample 8

text: ArrayExpress

text: human

text: astrocytoma

text: Grade 2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: male

text: Sample 8


E-MTAB-3708:Sample 9

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

text: E-MTAB-3708:Sample 9

text: ArrayExpress

text: human

text: oligoastrocytoma

text: Grade 2

characteristic: disease staging

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 9


E-MTAB-3707:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 1

unit: week

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Protocols: 14 week old B6CastF1 (C57Bl/6J mother x CAST/Ei father) female mouse were anesthetized and perfused first with PBS, and then with Liver Perfusion Medium (Gibco, Life Technologies). The whole liver was dissected and transferred to 10mL of Liver Digest Medium (Gibco, Life Technologies). The liver was mechanically dissociated, and incubated at 37◦C for 15-20 minutes with continuous shaking (225 rpm). Remaining tissue aggregates were gently triturated until dispersed, and the resulting liver cell suspension centrifuged for five minutes at 1000 rpm (at room temperature). The supernatant was carefully removed and the cells re-suspend in 10 mL of ice-cold Hepatocyte Wash Medium (Gibco, Life Technologies). The centrifugation and re-suspension steps were repeated twice additional times, and in the final re-suspension step, Hepatozyme (Gibco, Life Technologies) media was used. Finally the cells were filtered using a CellTrics 30 μM mesh filter (Partec), and kept on ice until loaded into the C1 IFC unit. All experiments involving mice were approved by the local ethical review committee, and a certificate of designation from the UK Home Office (the national authority for animal experimentation) was obtained. 5000 liver cells were loaded onto a 10-17 μm C1 Single-Cell Auto Prep IFC (Fluidigm), and cell capture was performed according to the manufacturer’s instructions. The capture efficiency was inspected using a microscope, and there were single cells in 70 wells, cell debris in four wells, and more than one cell (or one cell plus debris) in 22 wells. The data from wells that contained more than one cell or debris was subsequently removed from analysis. Upon capture, reverse transcription and cDNA pre-amplification were performed in the 10-17 μm C1 Single-Cell Auto Prep IFC using the SMARTer PCR cDNA Synthesis kit (Clontech) and the Advantage 2 PCR kit (Clontech). 1 μl of the ERCC Spike-In Control Mix (Ambion) in a 1:400 dilution in C1 Loading Reagent was added to the lysis mix for the liver cells. cDNA was harvested, quantified with the Bioanalyzer DNA High-Sensitivity kit (Agilent Technologies), and Nextera libraries prepared using the Nextera XT DNA Sample Preparation Kit and the Nextera Index Kit (Illumina) by following the instructions in the Fluidigm manual (“Using the C1 Single-Cell Auto Prep System to Generate mRNA from Single Cells and Libraries for Sequencing”).

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: multiple cells

characteristic: single cell well quality

characteristic: strain

text: Sample 1


E-MTAB-3707:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: B6CastF1 (C57Bl/6J mother x CAST/Ei father)

text: Sample 2

characteristic: title


E-MTAB-3707:Sample 3

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 3

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 3


E-MTAB-3707:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 4

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 4


E-MTAB-3707:Sample 5

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 5

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 5


E-MTAB-3707:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 6


E-MTAB-3707:Sample 7

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 7

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 7

characteristic: title


E-MTAB-3707:Sample 8

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 8

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 8


E-MTAB-3707:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 9

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 9


E-MTAB-3707:Sample 10

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 10

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 10


E-MTAB-3707:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 11


E-MTAB-3707:Sample 12

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 12

characteristic: title


E-MTAB-3707:Sample 13

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 13

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 13


E-MTAB-3707:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 14

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 14


E-MTAB-3707:Sample 15

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 15

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: no cell

characteristic: single cell well quality

text: Sample 15


E-MTAB-3707:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 16


E-MTAB-3707:Sample 17

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 17

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 17

characteristic: title


E-MTAB-3707:Sample 18

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 18

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 18


E-MTAB-3707:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 19

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 19


E-MTAB-3707:Sample 20

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 20

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 20


E-MTAB-3707:Sample 21

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 21


E-MTAB-3707:Sample 22

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 22

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 22

characteristic: title


E-MTAB-3707:Sample 23

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 23

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 23


E-MTAB-3707:Sample 24

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 24

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 24


E-MTAB-3707:Sample 25

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 25

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: debris

characteristic: single cell well quality

text: Sample 25


E-MTAB-3707:Sample 26

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 26


E-MTAB-3707:Sample 27

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 27

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 27

characteristic: title


E-MTAB-3707:Sample 28

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 28

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 28


E-MTAB-3707:Sample 29

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 29

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 29


E-MTAB-3707:Sample 30

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 30

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 30


E-MTAB-3707:Sample 31

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 31

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 31


E-MTAB-3707:Sample 32

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 32

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 32

characteristic: title


E-MTAB-3707:Sample 33

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 33

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 33


E-MTAB-3707:Sample 34

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 34

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 34


E-MTAB-3707:Sample 35

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 35

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 35


E-MTAB-3707:Sample 36

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 36

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 36


E-MTAB-3707:Sample 37

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 37

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 37

characteristic: title


E-MTAB-3707:Sample 38

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 38

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 38


E-MTAB-3707:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 39

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 39


E-MTAB-3707:Sample 40

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 40

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 40


E-MTAB-3707:Sample 41

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 41

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 41


E-MTAB-3707:Sample 42

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 42

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 42

characteristic: title


E-MTAB-3707:Sample 43

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 43

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 43


E-MTAB-3707:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 44

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 44


E-MTAB-3707:Sample 45

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 45

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 45


E-MTAB-3707:Sample 46

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 46

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 46


E-MTAB-3707:Sample 47

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 47

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 47

characteristic: title


E-MTAB-3707:Sample 48

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 48

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 48


E-MTAB-3707:Sample 49

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 49

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 49


E-MTAB-3707:Sample 50

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 50

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 50


E-MTAB-3707:Sample 51

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 51

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 51


E-MTAB-3707:Sample 52

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 52

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 52

characteristic: title


E-MTAB-3707:Sample 53

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 53

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 53


E-MTAB-3707:Sample 54

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 54

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 54


E-MTAB-3707:Sample 55

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 55

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 55


E-MTAB-3707:Sample 56

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 56

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

characteristic: strain

text: Sample 56


E-MTAB-3707:Sample 57

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 57

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 57

characteristic: title


E-MTAB-3707:Sample 58

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 58

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 58


E-MTAB-3707:Sample 59

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 59

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 59


E-MTAB-3707:Sample 60

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 60

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 60


E-MTAB-3707:Sample 61

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 61

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 61


E-MTAB-3707:Sample 62

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 62

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 62

characteristic: title


E-MTAB-3707:Sample 63

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 63

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 63


E-MTAB-3707:Sample 64

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 64

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 64


E-MTAB-3707:Sample 65

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 65

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: multiple cells

characteristic: single cell well quality

text: Sample 65


E-MTAB-3707:Sample 66

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 66

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 66


E-MTAB-3707:Sample 67

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 67

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 67

characteristic: title


E-MTAB-3707:Sample 68

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 68

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 68


E-MTAB-3707:Sample 69

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 69

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 69


E-MTAB-3707:Sample 70

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 70

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 70


E-MTAB-3707:Sample 71

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 71

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 71


E-MTAB-3707:Sample 72

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 72

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 72

characteristic: title


E-MTAB-3707:Sample 73

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 73

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 73


E-MTAB-3707:Sample 74

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 74

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 74


E-MTAB-3707:Sample 75

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 75

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: debris

characteristic: single cell well quality

text: Sample 75


E-MTAB-3707:Sample 76

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 76

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

characteristic: strain

text: Sample 76


E-MTAB-3707:Sample 77

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 77

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: no cell

text: Sample 77

characteristic: title


E-MTAB-3707:Sample 78

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 78

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 78


E-MTAB-3707:Sample 79

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 79

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 79


E-MTAB-3707:Sample 80

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 80

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 80


E-MTAB-3707:Sample 81

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 81

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

characteristic: strain

text: Sample 81


E-MTAB-3707:Sample 82

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 82

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 82

characteristic: title


E-MTAB-3707:Sample 83

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 83

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 83


E-MTAB-3707:Sample 84

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 84

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: no cell

text: Sample 84


E-MTAB-3707:Sample 85

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 85

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: no cell

characteristic: single cell well quality

text: Sample 85


E-MTAB-3707:Sample 86

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 86

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 86


E-MTAB-3707:Sample 87

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 87

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 87

characteristic: title


E-MTAB-3707:Sample 88

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 88

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: debris

text: Sample 88


E-MTAB-3707:Sample 89

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 89

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 89


E-MTAB-3707:Sample 90

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 90

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 90


E-MTAB-3707:Sample 91

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 91

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

characteristic: strain

text: Sample 91


E-MTAB-3707:Sample 92

text: EMBL-EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3707:Sample 92

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 92

characteristic: title


E-MTAB-3707:Sample 93

text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3707:Sample 93

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: multiple cells

text: Sample 93


E-MTAB-3707:Sample 94

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-MTAB-3707:Sample 94

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female

text: OK

text: Sample 94


E-MTAB-3707:Sample 95

text: EMBL-EBI

text: public

characteristic: SRA accession

text: E-MTAB-3707:Sample 95

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 95


E-MTAB-3707:Sample 96

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: E-MTAB-3707:Sample 96

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

text: OK

characteristic: strain

text: Sample 96


text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Homo Sapiens

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: male

characteristic: ArrayExpress-Sex

text: Haemonchus contortus

text: SC

text: public

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

text: Haemonchus contortus


text: 0.5 day

characteristic: ArrayExpress-Age

text: Shield

characteristic: ArrayExpress-DevelopmentalStage

text: Single cell

characteristic: ArrayExpress-OrganismPart

text: WT

characteristic: ArrayExpress-Phenotype

text: Zebrafish

text: H/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GGTGTTGTTTT) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: H/LF


text: 0.5 day

text: Shield

text: Single cell

text: WT

text: Zebrafish

text: H/LF

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (GTAACTGAGTG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: H/LF


text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA

text: Mus musculus

characteristic: strain


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: T/LF

characteristic: ArrayExpress-Genotype

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single cells in the margin. A 8 base indexing sequence (GATTCATC) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: T/LF

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells in the margin. A 8 base indexing sequence (GTCTTGGC) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by GC and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by GC and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (TCAGGAGG) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by GC and polyT.

text: Danio rerio

text: T/LF


text: Hatching:Long-pec : ZFS:0000033

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_1-sc-2306363

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed

characteristic: strain


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_211_phenotypic_1_2-sc-2306364

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGTCGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_3-sc-2306365

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_4-sc-2306366

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: ZMP_phenotype_211_phenotypic_1_5-sc-2306367

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_6-sc-2306368

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

characteristic: sample description

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ZMP_phenotype_211_phenotypic_1_7-sc-2306369

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_211_phenotypic_1_8-sc-2306370

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_9-sc-2306371

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_11-sc-2306373

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed

characteristic: strain


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_211_phenotypic_1_12-sc-2306374

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: ZMP_phenotype_211_non_phenotypic_1_1-sc-2306375

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGATGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_211_non_phenotypic_1_2-sc-2306376

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTTGTCGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: ZMP_phenotype_211_non_phenotypic_1_4-sc-2306378

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATAGAGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_phenotypic_1_10-sc-2306372

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

characteristic: sample description

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ZMP_phenotype_211_non_phenotypic_1_3-sc-2306377

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGATTAGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_211_non_phenotypic_1_5-sc-2306379

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTGTGTCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_non_phenotypic_1_6-sc-2306380

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAATCCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_211_non_phenotypic_1_7-sc-2306381

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GACCTTAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed

characteristic: strain


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_211_non_phenotypic_1_8-sc-2306382

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCCTGTTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: ZMP_phenotype_211_non_phenotypic_1_9-sc-2306383

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCACTGTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed


text: Hatching:Long-pec : ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_211_non_phenotypic_1_10-sc-2306384

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for neb, allele hu2849, ZMP phenotype 211 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTAACTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph211

text: Danio rerio

text: mixed