text: 25903077; 33659219

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SGP

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

characteristic: host status

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: pmid

text: Staphylococcus aureus

text: Not known

characteristic: specific host

text: Staphylococcus aureus

characteristic: title


status: PUBLIC

text: 25903077; 33659219

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Singapore

characteristic: country

text: Staphylococcus

characteristic: genus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

text: Not known

text: Not known

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Not known

characteristic: strain

text: Staphylococcus aureus

type: AMR curated data - CABBAGE

value: ciprofloxacin

value: CLSI

value: disk diffusion

value: susceptible

value: Staphylococcus aureus

value: clindamycin

value: resistant

value: erythromycin

value: gentamicin

value: tetracycline

value: trimethoprim-sulfamethoxazole


text: 25903077; 33659219

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SGP

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

characteristic: host status

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: pmid

text: Staphylococcus aureus

text: Not known

characteristic: specific host

text: Staphylococcus aureus

characteristic: title

value: intermediate


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

characteristic: Submitter Id

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: collection date

text: Singapore

characteristic: country

text: Staphylococcus

characteristic: genus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

text: Not known

text: Not known

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Not known

characteristic: strain

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SGP

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

characteristic: host status

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: pmid

text: Staphylococcus aureus

text: Not known

characteristic: specific host

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

characteristic: Submitter Id

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

text: WBG9023__X2_-sc-2011-07-08T12:24:13Z-1198628

characteristic: collection date

text: Singapore

characteristic: country

text: Staphylococcus

characteristic: genus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

text: Not known

text: Not known

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Not known

characteristic: strain

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SGP

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

characteristic: host status

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: pmid

text: Staphylococcus aureus

text: Not known

characteristic: specific host

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: WBG9023__X1_-sc-2011-07-08T12:24:11Z-1198627

characteristic: Submitter Id

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: collection date

text: Singapore

characteristic: country

text: Staphylococcus

characteristic: genus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

text: Not known

text: Not known

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Not known

characteristic: strain

text: Staphylococcus aureus


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Saccharomyces paradoxus

text: Saccharomyces paradoxus

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CH17_326K24-sc-2011-04-04T16:28:40Z-1117514

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

characteristic: SRA accession

text: CH17_47J17-sc-2011-04-04T16:28:41Z-1117515

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Bodo saltans

text: Lake Konstanz

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Bodo_gDNA_3kb-sc-2011-10-31T09:50:44Z-1292508

text: Bodo saltans

text: Bodo saltans

text: Lake Konstanz


text: Bodo saltans

text: Lake Konstanz

text: SC

text: public

text: Bodo_gDNA_5kb-sc-2011-11-03T11:11:05Z-1296247

text: Bodo saltans

text: Bodo saltans

text: Lake Konstanz


SlF

text: IBZ-ETH

text: public

text: SlF

text: SlF: Silene latifolia female U9

characteristic: description

text: France

characteristic: geographic origin

text: Silene latifolia

text: Silene latifolia

text: flower bud

characteristic: tissue type

text: SlF

characteristic: title

type: has member


SlFf

characteristic: External Id

text: IBZ-ETH

text: public

text: SlFf

text: SlFf: Silene latifolia female offspring of SlF and SlM

text: Switzerland

text: Silene latifolia

characteristic: organism

text: Silene latifolia

text: flower bud

text: SlFf


text: Schistosoma mansoni

text: SC

characteristic: INSDC center name

text: public

text: Schistosoma_mansoni-sc-2011-04-18T19:40:26Z-1124990

text: Schistosoma mansoni

text: cercariae treated with MLV as eggs

characteristic: sample description

text: Schistosoma mansoni


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004922

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description


text: SC

characteristic: INSDC first public

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004915

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

characteristic: INSDC last update

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004914

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

characteristic: INSDC status

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004916

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

characteristic: SRA accession

text: Schistosoma_mansoni_transposon_integration_site_sequencing-sc-2011-01-27-253063

text: Schistosoma mansoni

text: transposon insertion site sequencing

text: Schistosoma mansoni


text: SC

text: public

text: Schistosoma_mansoni_transposon_integration_site_sequencing-sc-2011-01-27-253062

characteristic: Submitter Id

text: Schistosoma mansoni

text: transposon insertion site sequencing

text: Schistosoma mansoni


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-03-1001889

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004919

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004917

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: Schistosoma mansoni

characteristic: ArrayExpress-Species

text: SC

text: public

text: Schistosoma_mansoni-sc-2011-04-18T19:38:11Z-1124991

text: Schistosoma mansoni

text: cercariae treated with MLV as eggs

text: Schistosoma mansoni


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004918

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004920

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004925

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-03-1001890

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004921

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: Schistosoma mansoni

text: SC

text: public

text: Schistosoma_mansoni-sc-2011-04-06T17:42:02Z-1118403

text: Schistosoma mansoni

text: cercariae treated with MLV as eggs

text: Schistosoma mansoni


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004924

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-03-1001888

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-05-1004923

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: SC

text: public

text: Schisto_MLV_insertion_site_sequencing-sc-2010-11-03-1001887

text: Schistosoma mansoni

text: Schistosoma mansoni

text: transposon insertion site sequencing


text: MPI-EVA

text: public

text: human

characteristic: common name

text: Philippines

characteristic: individual

text: Homo sapiens

text: Surigaonon

characteristic: population

text: Homo sapiens


text: MPI-EVA

text: public

text: human

text: Philippines

characteristic: geographic origin

text: Homo sapiens

text: Manobo

text: Homo sapiens


characteristic: External Id

text: MPI-EVA

text: public

text: human

text: Philippines

text: Homo sapiens

text: Mamanwa

text: Homo sapiens


text: Clostridium difficile

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Peptoclostridium difficile

characteristic: organism

text: Peptoclostridium difficile

characteristic: strain


text: Clostridium difficile

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Peptoclostridium difficile

characteristic: pubmed id

text: Peptoclostridium difficile

text: Human

characteristic: specific host


characteristic: ENA-LAST-UPDATE

text: MHH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: middle isolate NN11 (clone C)

characteristic: isolate

text: Pseudomonas aeruginosa C-NN11

text: Pseudomonas aeruginosa C-NN11

text: Microevolution of the most abundant Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

characteristic: title


characteristic: External Id

text: MHH

text: public

characteristic: Submitter Id

text: late isolate NN80 (clone C)

text: Pseudomonas aeruginosa C-NN80

text: Pseudomonas aeruginosa C-NN80


text: MHH

text: public

text: early isolate RN3 (clone PA14)

text: Pseudomonas aeruginosa PA14-RN3

characteristic: organism

text: Pseudomonas aeruginosa PA14-RN3


characteristic: ENA-FIRST-PUBLIC

text: MHH

text: public

text: early isolate NN2 (clone C)

text: Pseudomonas aeruginosa C-NN2

text: Pseudomonas aeruginosa C-NN2


text: MHH

characteristic: INSDC center name

text: public

text: late isolate RN43 (clone PA14)

text: Pseudomonas aeruginosa PA14-RN43

text: Pseudomonas aeruginosa PA14-RN43


text: MHH

text: public

text: middle isolate RN6 (clone PA14)

text: Pseudomonas aeruginosa PA14-RN6

text: Pseudomonas aeruginosa PA14-RN6


text: PENN STATE

text: public

characteristic: StrainOrLine

tag: Namespace:PENN STATE

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Protocols:

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


E-MTAB-437:mouse H2AK5sc ChIP 1

characteristic: ENA-LAST-UPDATE

text: CRUK-CRI

text: public

text: E-MTAB-437:mouse H2AK5sc ChIP 1

text: ArrayExpress

text: hepatocytes

characteristic: cell type

text: house mouse

text: Protocols: The animal livers were crosslinked with formaldehyde treatment and chromatin fragmented to an average of 300 bp by sonication. Chromatin from an mass equivalent of 1/4 mouse liver was used for each ChIP experiment. Solexa libraries were prepared following the instructions of Illumina (Sample preparation for genomic DNA - version 2.2) with the following modifications. The ChIP-enriched DNA and input DNA were not further fragmented. After end-repair and addition of an A base to the 3 prime ends, the adapters were ligated to the ends of the DNA Fragments using 2 ml of fourtyfold diluted Adapter oligo mix in a total reaction volume of 25 ml. Between these steps, the DNA was purified using the DNA Clean-and-Concentrator-5 kit (Zymo Research). Subsequently, the DNA was amplified by 18 cycles of PCR, purified with QIAquick PCR purification Kit, and eluted with 33.5 ml of 10 mM tris buffer at pH7.0. The PCR-product was sized fractionated on 2 percent agarose gel and a gel slice containing the 200-300 bp fragments was excised. Hepatocytes were prepared by direct perfusion of the liver with buffered salt solution followed by percent formaldehyde. After 10 minutes the tissue was removed and diced in 500 mM glycine buffer to neutralize the formaldehyde. After homogenization the hepatocytes were rinsed with PBS.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

text: liver

characteristic: tissue

text: mouse H2AK5sc ChIP 1


E-MTAB-437:human NRSF ChIP 1

text: CRUK-CRI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-437:human NRSF ChIP 1

text: ArrayExpress

text: hepatocytes

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: male

text: liver

text: human NRSF ChIP 1


text: Danio rerio

characteristic: ArrayExpress-Species

text: TL

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: SL3_03_D9-sc-2011-06-06T16:13:04Z-1136491

text: zebrafish

text: Danio rerio

text: Exome

characteristic: sample description

text: Danio rerio

text: TL

characteristic: strain


text: Danio rerio

text: TL

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: SL3_02_D8-sc-2011-04-11T09:30:34Z-1119718

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SL3_04_G4-sc-2011-06-06T16:13:36Z-1136550

text: zebrafish

characteristic: common name

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_B3-sc-2011-06-06T16:12:35Z-1136441

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_H9-sc-2011-06-06T16:13:06Z-1136495

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_A5-sc-2011-06-06T16:13:37Z-1136552

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_G9-sc-2011-06-06T16:14:00Z-1136590

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_E9-sc-2011-06-06T16:13:58Z-1136588

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_E3-sc-2011-04-11T09:30:03Z-1119641

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_H2-sc-2011-06-06T16:13:28Z-1136535

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_E12-sc-2011-06-06T16:14:12Z-1136612

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_01_A12-sc-2011-05-04T10:49:03Z-1126656

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_D10-sc-2011-04-11T09:30:43Z-1119750

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_F8-sc-2011-04-11T09:30:35Z-1119722

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_01_A5-sc-2011-05-04T10:48:59Z-1126649

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_H1-sc-2011-06-06T16:13:24Z-1136527

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_G4-sc-2011-06-06T16:12:43Z-1136454

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_01_A10-sc-2011-05-04T10:49:02Z-1126654

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_04_C7-sc-2011-06-06T16:13:48Z-1136570

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_F12-sc-2011-04-11T09:30:54Z-1119780

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_C12-sc-2011-06-06T16:13:17Z-1136514

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_H11-sc-2011-05-04T10:49:12Z-1126675

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_03_F10-sc-2011-06-06T16:13:10Z-1136501

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_D6-sc-2011-04-11T09:30:24Z-1119686

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_02_E12-sc-2011-05-04T10:49:13Z-1126676

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: 24509479; 25101644

text: SC

text: public

text: THA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host health state

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human

characteristic: specific host

value: ceftriaxone

value: broth dilution

value: mg/L

value: Streptococcus pneumoniae


text: 24509479; 25101644

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: THA

characteristic: SRA accession

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: THA

characteristic: Submitter Id

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: strain


text: 24509479; 25101644

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

text: SC

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host health state

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

text: Streptococcus pneumoniae; Streptococcus pneumoniae

characteristic: title


text: 24509479; 25101644

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: human

characteristic: specific host


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: THA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: human

characteristic: strain


text: SC

text: public

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: carriage

characteristic: host health state

text: nasopharynx

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

characteristic: host

text: carriage

characteristic: isolate

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: title


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human

characteristic: specific host


text: 24509479; 25101644

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

text: THA

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

text: SC

text: public

text: THA

text: Streptococcus

characteristic: genus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: carriage

characteristic: host health state

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: strain


text: 24509479; 25101644

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

characteristic: host

text: carriage

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: 24509479; 25101644

text: SC

text: public

text: THA

characteristic: Submitter Id

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: specific host

characteristic: title


text: 24509479; 25101644

characteristic: External Id

text: SC

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: carriage

characteristic: host health state

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: strain


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

characteristic: host

text: carriage

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human


text: 24509479; 25101644

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human


text: 24509479; 25101644

text: SC

text: public

text: THA

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: specific host


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

text: public

text: 690STDY5101953-sc-2011-04-19T13:18:29Z-1125102

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Pinky mutant

characteristic: sample description

text: Mus musculus


E-MTAB-466:ovine herpesvirus 2

characteristic: ENA-FIRST-PUBLIC

text: GenePool

characteristic: INSDC first public

text: public

text: E-MTAB-466:ovine herpesvirus 2

text: ArrayExpress

characteristic: broker name

text: Protocols: BJ1035 cells were grown in suspension in T175 flasks (Nunc) in 60ml of Iscoves Modified Dulbeccos Medium (IMDM) (Invitrogen) supplemented with 10% foetal calf serum (Sera Laboratories International) 1% penicillin-streptomycin (Invitrogen) 0.05% interleukin 2 (IL2) (Novartis Pharmaceuticals UK Ltd) and incubated at 37C, 5% CO2. Once these suspension cells had reached a high concentration, the cells were pipetted up and down to break up clumps and 2/3 of the suspension was transferred to a new T175 flask with 1/3 fresh medium. 5x106 BJ1035 cells were isolated and centrifuged at 478xg for 10 minutes at room temperature to pellet the cells. The supernatant was removed, the pellet resuspended in the remaining media, and then transferred to a 1.5ml microcentrifuge tube on ice (Greiner Bio-One). The cells were centrifuged at 9211xg for 30 seconds at room temperature (DJB, Sigma 1-13) and the remaining media was removed. 1ml of RNA-Bee (AMS Biotechnology [Europe] Ltd) was used to homogenize the cells and degrade endogenous RNases by pipetting up and down. 200?l chloroform (Sigma) was added to the lysate, which was then shaken vigorously by hand for 15-30 seconds, stored on ice for 5 minutes, and centrifuged at 12000xg for 15 minutes at 4C (DJB, Sigma 1-15PK). The RNA-containing aqueous phase was removed to a clean 1.5ml microcentrifuge tube and was treated with 500?l isopropanol (Sigma) to desalt and bring the RNA out of solution. The solution was allowed to sit at room temperature for 5-10 minutes and then centrifuged at 12000xg for 5 minutes at 4C to pellet the RNA. The supernatant was removed and the RNA pellet was washed with 200?l 75% ethanol, made with 0.1% diethylpyrocarbonate (DEPC)-treated water (1ml DEPC in 1L water, left overnight at room temperature and then autoclaved to deactivate the DEPC; Sigma) to remove any remaining salt after the isopropanol precipitation. The sample was vortexed briefly to dislodge the pellet from the side of the tube to ensure complete washing, and was centrifuged at 7500xg for 5 minutes at 4C to re-pellet. The ethanol was removed and the RNA pellet was allowed to air dry for 5-10 minutes on ice before being re-solubilised in 50?l 0.1% DEPC-treated water, by pipetting up and down.

characteristic: description

text: ovine herpesvirus 2

text: Ovine herpesvirus 2

text: Ovine herpesvirus 2

text: ovine herpesvirus 2

characteristic: title


text: 24509479; 25101644

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: THA

text: Streptococcus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host health state

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: strain


text: 24509479; 25101644

characteristic: External Id

text: SC

text: public

text: THA

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human

characteristic: specific host


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: title


text: 24509479; 25101644

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: THA

text: Streptococcus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host health state

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

characteristic: strain


text: 24509479; 25101644

text: SC

text: public

text: THA

characteristic: Submitter Id

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human

characteristic: specific host


text: 24509479; 25101644

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: title


characteristic: External Id

text: SC

text: public

text: THA

characteristic: SRA accession

text: Streptococcus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host health state

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

text: SC

text: public

text: THA

characteristic: Submitter Id

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

characteristic: isolate

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: strain


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: serovar

text: human


text: 24509479; 25101644

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: specific host


text: 24509479; 25101644

characteristic: External Id

text: SC

text: public

text: THA

characteristic: SRA accession

text: Streptococcus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: SC

text: public

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: 24509479; 25101644

text: SC

text: public

text: THA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

text: Homo sapiens

text: carriage

characteristic: host health state

characteristic: isolate

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: strain

characteristic: title


text: early neurula

characteristic: ArrayExpress-DevelopmentalStage

text: rax-/-

characteristic: ArrayExpress-Genotype

text: anterior half

characteristic: ArrayExpress-OrganismPart

text: abnormal eye development

characteristic: ArrayExpress-Phenotype

text: Xenopus Tropicalis

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: western clawed frog

characteristic: common name

text: Xenopus (Silurana) tropicalis

characteristic: organism

text: Xenopus tropicalis Embryo

characteristic: sample description

text: Xenopus (Silurana) tropicalis


text: early neurula

text: rax+/+

text: anterior half

text: wt

text: Xenopus Tropicalis

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: Xenopus tropicalis Embryo

text: Xenopus (Silurana) tropicalis


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

characteristic: host health state

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human

characteristic: specific host

characteristic: strain


text: 24509479; 25101644

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: title


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: THA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: THA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Thailand: Maela

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human


text: 24509479; 25101644

text: SC

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

characteristic: host health state

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: human

characteristic: specific host


text: 24509479; 25101644

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: THA

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: NT

text: human

characteristic: strain


text: 24509479; 25101644

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: THA

characteristic: SRA accession

text: Streptococcus

text: Thailand: Maela

text: Homo sapiens

text: carriage

text: nasopharynx

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT


text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: 4WAY_Diploid_Age_R2_F12_T5-sc-2011-03-24T13:52:23Z-1107312

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA last update

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: carriage

characteristic: host status

text: nasopharynx

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: sub species


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: TBC

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: carriage

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: NT

characteristic: serovar

text: human

characteristic: specific host

characteristic: title


text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Bordetella bronchiseptica

characteristic: ArrayExpress-Species

text: SC

text: public

text: Bordetella bronchiseptica

text: Bordetella bronchiseptica


text: SIB

text: public

characteristic: Number of reads sequenced

text: Acetobacter pasteurianus, LMG 1262T, type strain, purchased from the Belgian Coordinated Collection of Microorganisms (BCCM/LMG).

characteristic: description

text: Isolated from beer by Beijerinck (1916) (Hansen, 1879). Synthetic media number 13, 17 and 239 from the BCCM Collection Culture Media, 28-30 °C.

characteristic: isolation and growth conditions

text: Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471

text: Acetobacter pasteurianus strain LMG 1262T, type strain


characteristic: ENA-FIRST-PUBLIC

text: SIB

characteristic: INSDC center name

text: public

text: Gluconacetobacter oboediens, 174Bp2 strain, isolated from submerged wine vinegar production in our laboratory.

text: Isolated from submerged wine vinegar production in our laboratory Growth conditions: Synthetic media number 239 from the BCCM Collection Culture Media, 28-30 °C.

text: Komagataeibacter oboediens 174Bp2

text: Komagataeibacter oboediens 174Bp2

text: Gluconacetobacter oboediens strain 174Bp2


text: SIB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Gluconacetobacter europaeus, LMG 18494, V3 strain, purchased from the Belgian Coordinated Collection of Microorganisms (BCCM/LMG).

text: Isolated from submerged vinegar by Trček et al. (2000) Growth conditions: Synthetic media number 239 from the BCCM Collection Culture Media, 28-30 °C.

text: Komagataeibacter europaeus LMG 18494

text: Komagataeibacter europaeus LMG 18494

text: Gluconacetobacter europaeus strain LMG 18494


text: SIB

text: public

text: Gluconacetobacter europaeus, LMG 18890T, type strain, purchased from the Belgian Coordinated Collection of Microorganisms (BCCM/LMG).

text: Isolated from submerged vinegar by Sievers et al. (1992) (formerly Acetobacter europaeus) Growth conditions: Synthetic media number 239 from the BCCM Collection Culture Media, 28-30 °C.

text: Komagataeibacter europaeus LMG 18890

characteristic: organism

text: Komagataeibacter europaeus LMG 18890

characteristic: strain

text: Gluconacetobacter europaeus strain LMG 18890T, type strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB

text: public

text: Acetobacter pasteurianus, isolated from submerged wine vinegar production.

text: Isolated from submerged wine vinegar production. Growth conditions: Synthetic media number 13, 17 and 239 from the BCCM Collection Culture Media, 28-30 °C.

text: Acetobacter pasteurianus 3P3

text: Acetobacter pasteurianus 3P3

text: Acetobacter pasteurianus strain LMG


text: SIB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Gluconacetobacter europaeus, 5P3 strain, isolated from submerged wine vinegar production in our laboratory.

text: Komagataeibacter europaeus 5P3

text: Komagataeibacter europaeus 5P3

text: Gluconacetobacter europaeus strain 5P3


E-MTAB-540:Synthetic 10000 DNA library

text: ED

text: public

text: E-MTAB-540:Synthetic 10000 DNA library

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: PCR read-off microarrays: Extension reaction mix (200 uL) without primers was prepared according to a Promega standard protocol using a PCR Master Mix (Promega; 25 U/mL Taq Polymerase, 200 uM dNTP, 1.5 mM MgCl2) was loaded onto the microarray using an Agilent hybridization cover slide. The first extension step was carried out at 55C for 16 h (overnight). Hereafter, the reaction mixture was removed using a pipette and fresh PCR reaction mix (200 uL) with Solexa-primer-1 and 2 (0.1 uM) were loaded onto the microarray and a standard PCR cycle was set up in a GeneMachines Hyb4 automated hybridizer [40 cycles; denaturation at 94C for 30 s, annealing at 65C for 1 min, extension at 70C for 1 min]. In addition, an initial 3 min denaturation step at 94C and a final 15 min extension step at 70C were carried out. Immediately after the PCR had finished the reaction mix was collected using a pipette and the microarray washed with H2O (3 x 50 uL). The aqueous fractions were pooled together and concentrated by speed vac followed by purification by preparative DNA gel electrophoresis (dsDNA-10,000: 1.65 ug, 40% isolated yield). PCR in solution: The purified product (250 ng) from the PCR read-off microarrays were used as templates in another round of PCR with Solexa-primer-1 and 2 (1 uM) in a 1 x PCR Master Mix (200 uL) in a Techne TC-312 PCR cycler with the same cycle as on microarray. After PCR the samples were concentrated by speed vac followed by purification by preparative DNA gel electrophoresis (dsDNA-10,000-2: 16.8 ug, 30% isolated yield). This sample is not extracted from any biosample material as it is a synthetic PNA library.

text: synthetic construct

text: synthetic DNA

text: synthetic construct

text: Synthetic 10000 DNA library


text: SC

text: public

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public


characteristic: ArrayExpress-Species

text: SC

text: public

text: H102100163-sc-2011-06-15T09:57:45Z-1165548


text: Salmonella Farsta

text: SC

text: public

text: 09CEB7133SAL-sc-2011-06-15T09:57:55Z-1165567

text: Salmonella enterica subsp. enterica serovar Farsta


text: Salmonella Lagos

text: SC

text: public

text: S6943_03-sc-2011-06-15T09:57:57Z-1165570

text: Salmonella enterica

text: Salmonella enterica


text: H07 246 0339

text: SC

text: public

text: H07_246_0339-sc-2011-06-15T09:57:40Z-1165538

text: H07 246 0339


text: H07 016 0417

text: SC

text: public

text: H07_016_0417-sc-2011-06-15T09:57:32Z-1165529

text: H07 016 0417


text: Salmonella Farsta

text: BR 3483

text: SC

text: public

text: BR 3483


text: SC

text: public

text: H1041406001-sc-2011-06-15T09:57:50Z-1165557


text: SC

text: public

text: H103920583-sc-2011-06-15T09:57:49Z-1165556


text: Salmonella Lagos

text: SC

text: public

text: S5564_09-sc-2011-06-15T09:57:57Z-1165569

text: Salmonella enterica

text: Salmonella enterica


text: SC

text: public

text: H104240405-sc-2011-06-15T09:57:50Z-1165558


text: SC

text: public

text: H101560198-sc-2011-06-15T09:57:44Z-1165547


text: Salmonella Lagos

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica


text: SC

text: public

text: H100800267-sc-2011-06-15T09:57:43Z-1165545


text: SC

text: public

text: 94640445-sc-2011-07-27T14:47:52Z-1248416


text: Salmonella Tumodi

text: BR 3660

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: BR 3660


text: H07 394 0379

text: SC

text: public

text: H07_394_0379-sc-2011-06-15T09:57:39Z-1165537

text: H07 394 0379


text: SC

text: public


text: Salmonella Tsevie

text: BR 1781

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: BR 1781


text: SC

text: public

text: H101020440-sc-2011-06-15T09:57:44Z-1165546


text: H07 182 0182

text: SC

text: public

text: H07_182_0182-sc-2011-06-15T09:57:34Z-1165531

text: H07 182 0182


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: SC

text: public

text: H100760028-sc-2011-06-15T09:57:42Z-1165544


text: Salmonella enterica subsp. enterica serovar Agama

text: SC

text: public


text: SC

text: public

text: 94140627-sc-2011-07-27T14:47:53Z-1248417


text: H07 166 0082

text: SC

text: public

text: H07_166_0082-sc-2011-06-15T09:57:33Z-1165530

text: H07 166 0082


text: SC

text: public

text: H105280433-sc-2011-06-15T09:57:54Z-1165564


text: Salmonella Gloucester

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica


text: SC

text: public

text: H100420171-sc-2011-06-15T09:57:42Z-1165543


text: SC

text: public

text: H105100366-sc-2011-06-15T09:57:53Z-1165562


text: SC

text: public

text: H105000301-sc-2011-06-15T09:57:52Z-1165561


text: SC

text: public

text: S3174_10-sc-2011-06-15T09:58:01Z-1165575


text: H07 246 0338

text: SC

text: public

text: H07_246_0338-sc-2011-06-15T09:57:35Z-1165534

text: H07 246 0338


text: SC

text: public

text: H103260370-sc-2011-06-15T09:57:48Z-1165553


text: H07 338 0264

text: SC

text: public

text: H07_338_0264-sc-2011-06-15T09:57:38Z-1165536

text: H07 338 0264


text: SC

text: public

text: H105260826-sc-2011-06-15T09:57:53Z-1165563


text: SC

text: public


text: SC

text: public

text: S4483_04-sc-2011-06-15T09:58:00Z-1165574


text: SC

text: public

text: H100120548-sc-2011-06-15T09:57:41Z-1165542


text: SC

text: public

text: H102540233-sc-2011-06-15T09:57:47Z-1165552


text: SC

text: public


text: Salmonella enterica subsp. enterica serovar Typhimurium

text: SC

text: public

text: H103720606-sc-2011-06-15T09:57:49Z-1165555


text: H07 230 0280

text: SC

text: public

text: H07_230_0280-sc-2011-06-15T09:57:34Z-1165532

text: H07 230 0280


text: SC

text: public

text: H104680513-sc-2011-06-15T09:57:51Z-1165559


text: SC

text: public

text: H090260055-sc-2011-06-15T09:57:41Z-1165541


text: Salmonella Gloucester

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica


text: SC

text: public

text: H103700509-sc-2011-06-15T09:57:48Z-1165554


text: H07 362 0321

text: SC

text: public

text: H07_362_0321-sc-2011-06-15T09:57:40Z-1165539

text: H07 362 0321


text: SC

text: public

text: H104920557-sc-2011-06-15T09:57:52Z-1165560


text: H07 474 0455

text: SC

text: public

text: H07_474_0455-sc-2011-06-15T09:57:40Z-1165540

text: H07 474 0455


text: H07 234 0179

text: SC

text: public

text: H07_234_0179-sc-2011-06-15T09:57:35Z-1165533

text: H07 234 0179


text: SC

text: public

text: B_fibrisolvens_164-sc-2011-03-17-1101614

text: Butyrivibrio fibrisolvens 16/4

text: Butyrivibrio fibrisolvens 16/4


text: SC

text: public

text: Eubacterium rectale DSM 17629

text: Eubacterium rectale DSM 17629


text: SC

text: public

text: Ruminococcus

text: Ruminococcus


text: SC

text: public

text: B_pseudocatenulatum_D2CA-sc-2011-03-17-1101612

text: Bifidobacterium pseudocatenulatum D2CA

text: Bifidobacterium pseudocatenulatum D2CA


text: SC

text: public

text: E_cylindroides_T287-sc-2011-03-07-1093688

text: Faecalitalea cylindroides T2-87

text: Faecalitalea cylindroides T2-87


text: SC

text: public

text: Blautia wexlerae

text: Blautia wexlerae


text: SC

text: public

text: Clostridium

text: Clostridium


text: SC

text: public

text: R_intestinalis_XB6B4-sc-2011-03-17-1101615

text: Roseburia intestinalis XB6B4

text: Roseburia intestinalis XB6B4


text: SC

text: public

text: Blautia obeum A2-162

text: Blautia obeum A2-162


text: SC

text: public

text: F_prausnitzii_SL33-sc-2011-03-17-1101613

text: Faecalibacterium prausnitzii SL3/3

text: Faecalibacterium prausnitzii SL3/3


text: SC

text: public

text: Anaerostipes hadrus

text: Anaerostipes hadrus


text: SC

text: public

text: Kiloniellales

text: Kiloniellales


text: SC

text: public

text: segmented filamentous bacterium

text: segmented filamentous bacterium


text: SC

text: public

text: Coprococcus catus GD/7

text: Coprococcus catus GD/7


text: SC

text: public

text: Coprococcus sp. ART55/1

text: Coprococcus sp. ART55/1


text: SC

text: public

text: Blautia

text: Blautia


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Dessication_R2_F12_T9-sc-2011-08-16T11:27:42Z-1258846

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Heat_R1_F12_10-sc-2011-08-16T11:27:29Z-1258825

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Age_R2_F12_T10-sc-2011-08-16T11:27:38Z-1258841

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Age_R1_F12_T10-sc-2011-08-16T11:27:31Z-1258829

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

text: SC

text: public

text: 4WAY_Diploid_Heat_R2_F12_10-sc-2011-08-16T11:27:36Z-1258837

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: EASIH

text: public

characteristic: StrainOrLine

text: ArrayExpress

text: Protocols: Derivatives of Pichia pastoris strain GS115 were grown to steady state in chemostat cultures (1L volume in 2L fermenter; 30oC; pH5; 750 rpm stirring; air flow 1L/min) in a defined carbon-limited medium based on sorbitol (20 g/L). Dilution rates at steady state were 0.004-0.015 L/h, and all other non-carbon nutritional requirements were in excess at constant residual concentrations. Cells were lysed mechanically in the presence of trizol using a mikrodismembranator. After partitioning with chloroform, RNA was precipitated from the aqueous phase using isopropanol. RNA was washed with 70% ethanol, redissolved in water then subjected to a lithium chloride precipitation. 10 microg aliquots of the final RNA solution were depleted for rRNA using the Ribominus Eukaryote kit for RNA seq (Invitrogen), and the rRNA-depleted sample used for sequencing library construction.

characteristic: description

characteristic: genotype

text: Komagataella pastoris

text: Pichia pastoris

text: Komagataella pastoris

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: EASIH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Protocols: Derivatives of Pichia pastoris strain GS115 were grown to steady state in chemostat cultures (1L volume in 2L fermenter; 30oC; pH5; 750 rpm stirring; air flow 1L/min) in a defined carbon-limited medium based on sorbitol (20 g/L). Dilution rates at steady state were 0.004-0.015 L/h, and all other non-carbon nutritional requirements were in excess at constant residual concentrations. Heterologous protein synthesis was induced in the strains by changing the carbon source composition of the medium to sorbitol (11.3 g/L) plus methanol (9 g/L), allowing the cultures to again reach steady state before resampling. Cells were lysed mechanically in the presence of trizol using a mikrodismembranator. After partitioning with chloroform, RNA was precipitated from the aqueous phase using isopropanol. RNA was washed with 70% ethanol, redissolved in water then subjected to a lithium chloride precipitation. 10 microg aliquots of the final RNA solution were depleted for rRNA using the Ribominus Eukaryote kit for RNA seq (Invitrogen), and the rRNA-depleted sample used for sequencing library construction.

text: pPIC9 vector only

text: Komagataella pastoris

text: Pichia pastoris

text: Komagataella pastoris


text: EASIH

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Komagataella pastoris

characteristic: organism

text: Pichia pastoris

text: Komagataella pastoris


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EASIH

text: public

text: ArrayExpress

text: pPIC9 vector only

text: Komagataella pastoris

text: Pichia pastoris

text: Komagataella pastoris


text: Shigella flexneri

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sh05_7137-sc-2011-03-25T14:48:37Z-1109503

text: Shigella flexneri

text: Shigella flexneri

characteristic: strain


text: Shigella flexneri

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Sh09_9072-sc-2011-03-25T14:49:04Z-1109544

characteristic: Submitter Id

text: Shigella flexneri

text: Shigella flexneri


text: Shigella flexneri

characteristic: ArrayExpress-Species

text: SC

text: public

text: Sh06_7888-sc-2011-03-25T14:48:42Z-1109512

text: Shigella flexneri

text: Shigella flexneri


characteristic: ENA-CHECKLIST

text: SC

text: public

text: sh96_6494-sc-2011-03-25T14:48:13Z-1109473

characteristic: anonymized name

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: Diseased

characteristic: host health state

text: Faeces

characteristic: isolation source

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: specific host


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sh07_1018-sc-2011-03-25T14:48:08Z-1109465

text: France

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: H1_1270_0288-sc-2012-01-05T19:10:27Z-1330260

text: United Kingdom

text: Diseased

text: Faeces

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human


text: Shigella flexneri

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Sh03_1034-sc-2011-03-25T14:48:25Z-1109485

characteristic: Submitter Id

text: Shigella flexneri

text: Shigella flexneri

characteristic: strain


text: Shigella flexneri

text: SC

text: public

text: Sh05_7131-sc-2011-03-25T14:48:36Z-1109502

text: Shigella flexneri

text: Shigella flexneri


text: Shigella flexneri

text: SC

text: public

text: Sh07_6497-sc-2011-03-25T14:48:51Z-1109522

text: Shigella flexneri

text: Shigella flexneri


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Diseased

characteristic: host health state

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human

text: F3189_PFGE 3


text: Shigella flexneri

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sh05_1382-sc-2011-03-25T14:48:30Z-1109494

text: Shigella flexneri

text: Shigella flexneri


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

text: Sh08_3483-sc-2011-03-25T14:48:55Z-1109530

text: French Guiana

characteristic: country

text: French Guiana

text: Diseased

text: Diseased

characteristic: host status

text: Human

characteristic: isolation source

text: Shigella flexneri

characteristic: pmid

text: Shigella flexneri

characteristic: serovar

text: Human

characteristic: specific host

text: Shigella flexneri

characteristic: title


text: Shigella flexneri

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sh05_1396-sc-2011-03-25T14:48:31Z-1109495

characteristic: Submitter Id

text: Shigella flexneri

characteristic: organism

text: Shigella flexneri

characteristic: strain


text: Shigella flexneri

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Sh09_6999-sc-2011-03-25T14:49:04Z-1109543

text: Shigella flexneri

text: Shigella flexneri


text: Shigella flexneri

text: SC

characteristic: INSDC last update

text: public

text: Sh03_0850-sc-2011-03-25T14:48:25Z-1109484

text: Shigella flexneri

text: Shigella flexneri


text: Shigella flexneri

text: SC

text: public

text: Sh08_5585-sc-2011-03-25T14:48:57Z-1109532

text: Shigella flexneri

text: Shigella flexneri


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Sh06_3638-sc-2011-03-25T14:48:41Z-1109511

characteristic: collection date

text: France

characteristic: country

text: France

characteristic: geographic location (country and/or sea)

text: Diseased

characteristic: host health state

text: Diseased

characteristic: host status

text: Human

characteristic: isolation source

text: Shigella flexneri

characteristic: pmid

text: Shigella flexneri

text: Human

text: Shigella flexneri


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: H1_1292_0489-sc-2012-01-05T19:10:28Z-1330261

characteristic: anonymized name

text: United Kingdom

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: specific host

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: sh02_7265-sc-2011-03-25T14:48:02Z-1109457

characteristic: Submitter Id

text: France

text: Diseased

text: Faeces

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


text: Shigella flexneri

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sh09_5516-sc-2011-03-25T14:49:02Z-1109540

text: Shigella flexneri

text: Shigella flexneri


text: Shigella flexneri

text: SC

text: public

text: Sh07_5876-sc-2011-03-25T14:48:48Z-1109521

text: Shigella flexneri

text: Shigella flexneri


text: Shigella flexneri

text: SC

text: public

text: Sh05_6782-sc-2011-03-25T14:48:36Z-1109501

text: Shigella flexneri

text: Shigella flexneri


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: Diseased

characteristic: host health state

text: Faeces

characteristic: isolation source

text: Shigella sonnei

text: Shigella sonnei

text: Human

text: F3342_PFGE 5


characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: H1_1308_0349-sc-2012-01-05T19:10:29Z-1330262

characteristic: anonymized name

text: United Kingdom

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: specific host


text: Shigella flexneri

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Sh07_5519-sc-2011-03-25T14:48:48Z-1109520

characteristic: Submitter Id

text: Shigella flexneri

text: Shigella flexneri


text: SC

text: public

text: sh96_2938-sc-2011-03-25T14:48:11Z-1109471

text: France

text: Diseased

text: Faeces

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sh02_9633-sc-2011-03-25T14:48:04Z-1109459

text: France

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: Shigella flexneri

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Sh05_8715-sc-2011-03-25T14:48:37Z-1109505

text: Shigella flexneri

text: Shigella flexneri


characteristic: External Id

text: SC

text: public

text: Sh08_0350-sc-2011-03-25T14:48:52Z-1109525

characteristic: collection date

text: Diseased

characteristic: host health state

text: Diseased

characteristic: host status

text: Human

characteristic: isolation source

text: Shigella flexneri

characteristic: pmid

text: Shigella flexneri

characteristic: serovar

text: Human

text: Shigella flexneri


text: Shigella flexneri

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sh05_1631-sc-2011-03-25T14:48:33Z-1109496

text: Shigella flexneri

text: Shigella flexneri


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Sh07_4943-sc-2011-03-25T14:48:47Z-1109519

characteristic: Submitter Id

text: France

characteristic: country

text: France

characteristic: geographic location (country and/or sea)

text: Diseased

text: Diseased

text: Human

text: Shigella flexneri

characteristic: organism

text: Shigella flexneri

text: Human

characteristic: specific host

characteristic: strain

text: Shigella flexneri

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sh07_1910-sc-2011-03-25T14:48:10Z-1109467

characteristic: anonymized name

characteristic: collection date

text: France

text: Diseased

characteristic: host health state

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: sh02_8933-sc-2011-03-25T14:48:03Z-1109458

text: France

text: Diseased

text: Faeces

characteristic: isolation source

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: Shigella flexneri

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

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characteristic: ENA-FIRST-PUBLIC

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text: F3183_PFGE 2A

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text: Sh05_9277-sc-2011-03-25T14:48:39Z-1109507

text: Shigella flexneri

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text: Shigella flexneri

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text: Shigella flexneri

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characteristic: collection date

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text: Diseased

characteristic: host health state

text: Diseased

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characteristic: serovar

text: Human

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characteristic: ArrayExpress-Species

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: sh03_7022-sc-2011-03-25T14:48:07Z-1109463

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characteristic: SRA accession

text: Sh04_1706-sc-2011-03-25T14:48:27Z-1109487

characteristic: Submitter Id

text: Shigella flexneri

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text: Sh06_8628-sc-2011-03-25T14:48:42Z-1109513

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text: public

tag: Namespace:SPANISH NATIONAL CENTER FOR BIOTECHNOLOGY - CSIC

text: Cell line

characteristic: bio source type

text: Coriel Cell Repositories

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: Lymphocytes

characteristic: cell type

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characteristic: common name

text: Protocols: DNA was extracted from cell lines or periferal blood lymphocytes using standard methods

characteristic: description

text: Control

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: Extracted DNA

characteristic: organism part

text: Homo sapiens

text: Female

characteristic: sex

characteristic: title


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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SPANISH NATIONAL CENTER FOR BIOTECHNOLOGY - CSIC

characteristic: INSDC center name

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text: public

text: 46 years

characteristic: age

text: Peripheral blood

text: Patient

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text: Lymphocytes

text: human

text: Hereditary pheochromocytoma

text: Homo sapiens

text: Homo sapiens

text: Extracted DNA

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text: mus musculus

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characteristic: SRA accession

text: BG_SNP_E-sc-2011-03-29T09:52:03Z-1107325

characteristic: Submitter Id

text: house mouse

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characteristic: organism

text: genomic DNA

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text: male

text: mus musculus

text: SC

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text: house mouse

characteristic: common name

text: Mus musculus

text: genomic DNA

text: Mus musculus


status: KILLED

text: SC

text: killed

characteristic: Sample Description

characteristic: Strain

text: human

text: Homo sapiens

text: Homo sapiens


E-MTAB-582_2:Chromatin RNA 2

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text: DKFZ-SFG

text: public

text: E-MTAB-582_2:Chromatin RNA 2

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

text: Protocols: RNA fractions were prepared after cell fractionation starting with 1.10e7 cells.RNA fraction were transformed into cDNA library with solexa adaptors using the standard Illumina protocol.

characteristic: description

text: Chromatin RNA 2

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Chromatin RNA 2

characteristic: title


text: Plasmodium gallinaceum

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

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text: public

text: Pgal_D_3kb-sc-2011-10-31T09:33:39Z-1292507

text: Plasmodium gallinaceum

text: Plasmodium gallinaceum

characteristic: strain


text: Mus musculus

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text: SC

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text: SC_GCIGC5225460-sc-2011-09-19T14:27:17Z-1275778

characteristic: Submitter Id

text: house mouse

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characteristic: organism

text: Mus musculus


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC_GCIGC5225495-sc-2011-09-19T14:27:36Z-1275829

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225496-sc-2011-09-19T14:27:37Z-1275830

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225436-sc-2011-09-19T14:27:04Z-1275741

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225465-sc-2011-09-19T14:27:19Z-1275783

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225482-sc-2011-09-19T14:27:29Z-1275807

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225461-sc-2011-09-19T14:27:17Z-1275779

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225491-sc-2011-09-19T14:27:34Z-1275821

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225497-sc-2011-09-19T14:27:38Z-1275831

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225443-sc-2011-09-19T14:27:08Z-1275750

text: house mouse

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text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225490-sc-2011-09-19T14:27:34Z-1275820

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225466-sc-2011-09-19T14:27:20Z-1275785

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225481-sc-2011-09-19T14:27:28Z-1275806

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5225416-sc-2011-09-19T14:26:53Z-1275700

text: house mouse

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