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text: house mouse

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text: house mouse

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text: WT4xIL22_1-sc-2013-03-25T09:41:39Z-1462129

text: house mouse

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text: WT2xIL22_2-sc-2013-03-25T09:41:30Z-1462122

text: house mouse

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text: Mus musculus


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text: house mouse

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text: RNA from primary intestinal epithelium

text: Mus musculus


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text: Gastrointestinal

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text: KO1xCtrl_2-sc-2013-03-25T09:41:07Z-1462100

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

characteristic: sample description

text: Mus musculus


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text: Gastrointestinal

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text: KO4xIL22_2-sc-2013-03-25T09:41:22Z-1462114

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus

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text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

characteristic: ArrayExpress-Phenotype

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characteristic: ArrayExpress-Sex

text: Mus Musculus

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text: WT2xCtrl_2-sc-2013-03-25T09:41:29Z-1462120

text: house mouse

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text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

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text: WT3xCtrl_2-sc-2013-03-25T09:41:33Z-1462124

characteristic: Submitter Id

text: house mouse

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text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

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text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

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text: WT3xIL22_2-sc-2013-03-25T09:41:35Z-1462126

text: house mouse

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text: RNA from primary intestinal epithelium

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text: Institute for Systems Biology

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tag: Namespace:Institute for Systems Biology

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: The plasma was prepared from EDTA blood by centrifugation at 1,0006g for 15 minutes to separate the plasma and blood cells. Total RNA from plasma was extracted from 100 ml of the sample using the miRNeasy kit (Qiagen, Valencia, CA). The quality and quantity of the RNA were evaluated with Agilent 2100 Bioanalyzer (Santa Clara, CA) and NanoDrop 1000 spectrophotometer (Thermo Scientific, Wilmington, DE). In average, we obtained about 100 ng of RNA per ml of plasma. As a control we also obtained total RNA from Ambion (Life Technologies, Carlsbad, CA). NextGen sequencing libraries were prepared with small RNA sample preparation kits from Illumina (Illumina, San Diego, CA).

characteristic: description

text: ulcerative colitis

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: plasma

characteristic: organism part

text: Homo sapiens

characteristic: title

type: has member


text: Institute for Systems Biology

text: public

text: ArrayExpress

text: human

text: colorectal cancer

text: Homo sapiens

text: Homo sapiens

text: plasma

text: Homo sapiens


text: Institute for Systems Biology

text: public

text: 8 week

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: Mice were housed in laminar flow cages and permitted ad lib access to sterile food and water. Mice were exposed to aerosolized bacteria in a nose-only inhalation chamber (In-Tox products, Moriarty, NM) using a computer interface to control pressures and flows (Biaera Technologies, Frederick MD). To characterize the early course of each infection, 3-4 mice were euthanized after 4, 24 and 48hrs with intraperitoneal pentobarbital and exsanguinated by external cardiac puncture. Ten micrograms of total RNA isolated from lung tissue (equal amounts pooled from 3 individual animals) was sequentially treated with MICROBEnrich and MICROBExpress kits (Ambion) to enrich for bacterial mRNA through removal of mammalian mRNA/rRNA and bacterial rRNA, respectively. The resultant bacterial mRNA was fragmented using a RNA fragmentation kit (Ambion), which yielded fragments of 60-200 nucleotides in length. Libraries for Illumina sequencing were prepared as recommended by Illumina.

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: fresh specimen

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text: Balb/c

characteristic: strain

text: 48 hour

characteristic: time post F. tularensis SchuS4 infection


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characteristic: broker name

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characteristic: organism

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text: lung

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name: Solexa sequencing of Human HapMap individual NA19238 random fragment library

text: BGI

text: public

text: human

text: Human HapMap individual NA19238

text: Homo sapiens

text: Homo sapiens


text: NCMLS

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text: DSMZ

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: human

text: DG-75 Cell Line

text: Drexler HG chapter 16 Establishment and culture of leukemia-lymphoma cell in Cancer Cell Culture Methods and Protocols 2nd Edition Springer Berlin pp 181 to 200 in 2011

characteristic: differentiation method

text: B cell

characteristic: differentiation stage

text: Sporadic Burkitt lymphoma

characteristic: disease

characteristic: line

text: RPMI 1640 + 10%FBS + 1% Glutamine

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex

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characteristic: ENA-FIRST-PUBLIC

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text: NCMLS

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text: DSMZ

text: Cell Line

text: human

characteristic: common name

text: SU-DHL-5 Cell Line

text: B cell

text: Diffuse large B cell lymphoma GCB t(14;18) negative

text: RPMI 1640 + 10%FBS + 1% Glutamine

text: genomic DNA

text: Homo sapiens

text: Homo sapiens

text: Female


text: NCMLS

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characteristic: Submitter Id

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: human

text: Z-138 Cell Line

characteristic: description

text: B cell

text: Mantle cell lymphoma, aggressive

text: RPMI 1640 + 10%FBS

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Male


text: NCMLS

text: public

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text: Cell Line

text: human

text: BL-2 Cell Line

characteristic: differentiation method

text: B cell

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text: Sporadic Burkitt lymphoma

characteristic: disease

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text: RPMI 1640 + 10%FBS + 1% Glutamine

characteristic: medium

text: genomic DNA

characteristic: molecule

text: Homo sapiens

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: NCMLS

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text: Cell Line

text: human

text: U-266 Cell Line

text: Plasma cell

text: Multiple myeloma

text: RPMI 1640 + 20%FBS + 1% Glutamine

text: genomic DNA

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex

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text: NCMLS

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text: DSMZ

text: Cell Line

text: human

characteristic: common name

text: KARPAS-422 Cell Line

text: B cell

text: Diffuse large B cell lymphoma GCB t(14;18)-positive

text: RPMI 1640 + 20%FBS + 1% Glutamine

text: genomic DNA

text: Homo sapiens

text: Homo sapiens

text: Female


text: NCMLS

text: public

text: DSMZ

characteristic: biomaterial provider

text: Cell Line

characteristic: biomaterial type

text: human

text: JVM-2 Cell Line

characteristic: description

characteristic: differentiation method

text: B cell

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text: Mantle cell lymphoma, indolent

text: RPMI 1640 + 10%FBS

text: genomic DNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Female


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: External Id

text: SC

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text: public

text: Plasmodium berghei ANKA

text: Plasmodium berghei ANKA

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

text: ANKA

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: Danio rerio

text: TL/AB

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC first public

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text: public

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text: SL6_04_C4-sc-2013-02-21T15:07:36Z-1513336

text: zebrafish

text: Danio rerio

text: Exome

characteristic: sample description

text: Danio rerio

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characteristic: strain


text: Danio rerio

text: TL/AB

text: SC

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characteristic: SRA accession

text: SL6_04_D4-sc-2013-02-21T15:07:37Z-1513337

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_04_A4-sc-2013-02-21T15:07:34Z-1513334

text: zebrafish

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characteristic: organism

text: Exome

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text: TL/AB


text: Danio rerio

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text: SL6_04_B4-sc-2013-02-21T15:07:35Z-1513335

text: zebrafish

text: Danio rerio

text: Exome

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text: TL/AB


text: Danio rerio

text: TL/AB

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SL6_04_F3-sc-2013-02-21T15:07:30Z-1513331

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

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characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SL6_01_E1-sc-2013-02-21T15:01:24Z-1513026

text: zebrafish

text: Danio rerio

text: Exome

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text: TL/AB


text: Danio rerio

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characteristic: External Id

text: SC

text: public

text: SL6_01_D1-sc-2013-02-21T15:01:23Z-1513025

text: zebrafish

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text: Exome

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text: Danio rerio

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characteristic: INSDC center name

text: public

text: SL6_04_G3-sc-2013-02-21T15:07:31Z-1513332

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SL6_04_H3-sc-2013-02-21T15:07:33Z-1513333

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_01_C1-sc-2013-02-21T15:01:21Z-1513024

text: zebrafish

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text: Exome

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text: Danio rerio

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text: SC

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text: SL6_04_D3-sc-2013-02-21T15:07:28Z-1513329

text: zebrafish

text: Danio rerio

text: Exome

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text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_04_E3-sc-2013-02-21T15:07:29Z-1513330

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: SL6_03_B10-sc-2013-02-21T15:06:35Z-1513287

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

text: public

text: SL6_03_A10-sc-2013-02-21T15:06:33Z-1513286

text: zebrafish

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text: Danio rerio

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text: SL6_04_F12-sc-2013-02-21T15:08:47Z-1513403

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_E4-sc-2013-02-21T15:07:38Z-1513338

text: zebrafish

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text: Danio rerio

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text: SL6_04_G12-sc-2013-02-21T15:08:48Z-1513404

text: zebrafish

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text: zebrafish

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text: Danio rerio

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text: SL6_03_F10-sc-2013-02-21T15:06:43Z-1513291

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_03_G10-sc-2013-02-21T15:06:45Z-1513292

text: zebrafish

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text: SC

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text: SL6_03_E10-sc-2013-02-21T15:06:42Z-1513290

text: zebrafish

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text: Danio rerio

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text: SL6_01_H1-sc-2013-02-21T15:01:29Z-1513029

text: zebrafish

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text: Danio rerio

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text: SC

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text: SL6_04_D5-sc-2013-02-21T15:07:45Z-1513345

text: zebrafish

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text: Danio rerio

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text: zebrafish

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text: SL6_04_F4-sc-2013-02-21T15:07:39Z-1513339

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text: zebrafish

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text: SL6_04_E5-sc-2013-02-21T15:07:46Z-1513346

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SL6_04_F5-sc-2013-02-21T15:07:47Z-1513347

text: zebrafish

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text: Danio rerio

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text: SL6_04_H11-sc-2013-02-21T15:08:40Z-1513397

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text: Danio rerio

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text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: zebrafish

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text: Danio rerio

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text: zebrafish

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text: Danio rerio

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text: zebrafish

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text: zebrafish

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text: Danio rerio

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text: zebrafish

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text: Danio rerio

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text: zebrafish

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text: Danio rerio

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text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: zebrafish

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text: zebrafish

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text: Danio rerio

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text: SC

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text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: SL6_04_C6-sc-2013-02-21T15:07:52Z-1513352

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: SL6_04_E12-sc-2013-02-21T15:08:46Z-1513402

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: SL6_01_A1-sc-2013-02-21T15:01:17Z-1513022

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: SL6_04_D12-sc-2013-02-21T15:08:44Z-1513401

text: zebrafish

text: Danio rerio

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text: zebrafish

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text: zebrafish

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text: zebrafish

text: Danio rerio

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text: zebrafish

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text: SC

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text: SL6_04_E6-sc-2013-02-21T15:07:54Z-1513354

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

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text: SL6_04_D6-sc-2013-02-21T15:07:53Z-1513353

text: zebrafish

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text: zebrafish

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text: zebrafish

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text: Danio rerio

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text: SC

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text: SL6_04_D7-sc-2013-02-21T15:08:02Z-1513361

text: zebrafish

text: Danio rerio

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text: SC

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text: SL6_04_A10-sc-2013-02-21T15:08:24Z-1513382

text: zebrafish

text: Danio rerio

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text: SC

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text: SL6_04_B10-sc-2013-02-21T15:08:26Z-1513383

text: zebrafish

text: Danio rerio

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text: SC

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text: SL6_04_H9-sc-2013-02-21T15:08:23Z-1513381

text: zebrafish

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text: SC

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text: zebrafish

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text: SL6_04_G9-sc-2013-02-21T15:08:22Z-1513380

text: zebrafish

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text: SC

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text: SL6_04_F7-sc-2013-02-21T15:08:04Z-1513363

text: zebrafish

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text: SL6_04_F9-sc-2013-02-21T15:08:20Z-1513379

text: zebrafish

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text: zebrafish

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text: SC

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text: SL6_04_D1-sc-2013-02-21T15:07:08Z-1513313

text: zebrafish

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text: SC

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text: SL6_04_C8-sc-2013-02-21T15:08:09Z-1513368

text: zebrafish

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text: SC

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text: SL6_04_D10-sc-2013-02-21T15:08:28Z-1513385

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_A1-sc-2013-02-21T15:07:04Z-1513310

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_C10-sc-2013-02-21T15:08:27Z-1513384

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_B1-sc-2013-02-21T15:07:06Z-1513311

text: zebrafish

text: Danio rerio

text: Exome

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text: Danio rerio

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text: SC

text: public

text: SL6_04_A2-sc-2013-02-21T15:07:14Z-1513318

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_H1-sc-2013-02-21T15:07:13Z-1513317

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

text: public

text: SL6_04_G1-sc-2013-02-21T15:07:12Z-1513316

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_F1-sc-2013-02-21T15:07:10Z-1513315

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

text: public

text: SL6_04_G10-sc-2013-02-21T15:08:31Z-1513388

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_E1-sc-2013-02-21T15:07:09Z-1513314

text: zebrafish

text: Danio rerio

text: Exome

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text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_04_C7-sc-2013-02-21T15:08:01Z-1513360

text: zebrafish

text: Danio rerio

text: Exome

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text: Danio rerio

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text: SC

text: public

text: SL6_04_B7-sc-2013-02-21T15:07:59Z-1513359

text: zebrafish

text: Danio rerio

text: Exome

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text: Danio rerio

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text: SC

text: public

text: SL6_04_B2-sc-2013-02-21T15:07:15Z-1513319

text: zebrafish

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text: TL/AB


text: Danio rerio

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text: SC

text: public

text: SL6_04_C2-sc-2013-02-21T15:07:17Z-1513320

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_D2-sc-2013-02-21T15:07:18Z-1513321

text: zebrafish

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text: Exome

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text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_04_E2-sc-2013-02-21T15:07:19Z-1513322

text: zebrafish

text: Danio rerio

text: Exome

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text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_04_F2-sc-2013-02-21T15:07:20Z-1513323

text: zebrafish

text: Danio rerio

text: Exome

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text: TL/AB


text: Danio rerio

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text: SC

text: public

text: SL6_04_G2-sc-2013-02-21T15:07:22Z-1513324

text: zebrafish

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text: SC

text: public

text: SL6_04_H2-sc-2013-02-21T15:07:23Z-1513325

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_A3-sc-2013-02-21T15:07:24Z-1513326

text: zebrafish

text: Danio rerio

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text: Danio rerio

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text: SC

text: public

text: SL6_04_B3-sc-2013-02-21T15:07:25Z-1513327

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_C3-sc-2013-02-21T15:07:26Z-1513328

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_E8-sc-2013-02-21T15:08:12Z-1513370

text: zebrafish

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text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_04_D8-sc-2013-02-21T15:08:10Z-1513369

text: zebrafish

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text: Danio rerio

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text: SC

text: public

text: SL6_04_G8-sc-2013-02-21T15:08:14Z-1513372

text: zebrafish

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text: Danio rerio

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text: SC

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text: SL6_04_F8-sc-2013-02-21T15:08:13Z-1513371

text: zebrafish

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text: Danio rerio

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text: SC

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text: SL6_04_H8-sc-2013-02-21T15:08:15Z-1513373

text: zebrafish

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text: Danio rerio

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text: SC

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text: SL6_04_A9-sc-2013-02-21T15:08:15Z-1513374

text: zebrafish

text: Danio rerio

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text: SC

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text: SL6_04_B9-sc-2013-02-21T15:08:16Z-1513375

text: zebrafish

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text: Danio rerio

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text: SC

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text: SL6_04_C9-sc-2013-02-21T15:08:17Z-1513376

text: zebrafish

text: Danio rerio

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text: Danio rerio

text: TL/AB

text: SC

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text: SL6_04_D9-sc-2013-02-21T15:08:18Z-1513377

text: zebrafish

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text: SC

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text: SL6_04_E9-sc-2013-02-21T15:08:19Z-1513378

text: zebrafish

text: Danio rerio

text: Exome

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text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

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text: SC_GCIM5431241-sc-2012-12-10T10:02:10Z-1522567

text: house mouse

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text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431248-sc-2012-12-10T10:02:17Z-1522574

text: house mouse

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text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431242-sc-2012-12-10T10:02:11Z-1522568

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_GCIM5431671-sc-2012-12-11T08:01:14Z-1523073

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431240-sc-2012-12-10T10:02:09Z-1522566

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431253-sc-2012-12-10T10:02:25Z-1522579

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431280-sc-2012-12-10T10:02:53Z-1522606

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431279-sc-2012-12-10T10:02:53Z-1522605

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431250-sc-2012-12-10T10:02:22Z-1522576

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431252-sc-2012-12-10T10:02:24Z-1522578

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431251-sc-2012-12-10T10:02:23Z-1522577

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431259-sc-2012-12-10T10:02:31Z-1522585

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_GCIM5431666-sc-2012-12-11T08:01:05Z-1523068

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_GCIM5431667-sc-2012-12-11T08:01:09Z-1523069

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431258-sc-2012-12-10T10:02:30Z-1522584

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431257-sc-2012-12-10T10:02:29Z-1522583

text: house mouse

text: Mus musculus

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text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431244-sc-2012-12-10T10:02:13Z-1522570

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_GCIM5431668-sc-2012-12-11T08:01:10Z-1523070

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431256-sc-2012-12-10T10:02:28Z-1522582

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_GCIM5431669-sc-2012-12-11T08:01:12Z-1523071

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431247-sc-2012-12-10T10:02:16Z-1522573

text: house mouse

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text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431246-sc-2012-12-10T10:02:15Z-1522572

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_GCIM5431670-sc-2012-12-11T08:01:13Z-1523072

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431255-sc-2012-12-10T10:02:27Z-1522581

text: house mouse

text: Mus musculus

text: Mus musculus


text: Princeton University

text: public

tag: Namespace:Princeton University

text: ArrayExpress

characteristic: broker name

text: gray wolf

text: Protocols: animals were either sacrificied or (for dogs and wolves) died of natural causes brain frontal cortex was dissected immediately after death; in wolves, brain tissue was extracted from frozen heads

characteristic: description

text: wild

characteristic: domestication

text: Canis lupus

text: Canis lupus

text: brain frontal cortex

characteristic: organism part

text: Canis lupus

text: male

characteristic: sex

characteristic: title


text: Princeton University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: rabbit

text: domesticated

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus domesticus

text: brain frontal cortex

text: Oryctolagus cuniculus

text: female


text: Princeton University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: rabbit

characteristic: common name

text: wild

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: brain frontal cortex

text: Oryctolagus cuniculus

text: female


characteristic: ENA-FIRST-PUBLIC

text: Princeton University

text: public

text: ArrayExpress

text: Norway rat

text: tame

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: brain frontal cortex

text: Rattus norvegicus

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Princeton University

text: public

text: ArrayExpress

text: dog

text: domesticated

text: Canis lupus familiaris

text: Canis familiaris

text: brain frontal cortex

text: Canis lupus familiaris

text: female


text: Princeton University

characteristic: INSDC center name

text: public

text: ArrayExpress

text: domestic guinea pig

text: domesticated

text: Cavia porcellus

text: Cavia porcellus

text: brain frontal cortex

text: Cavia porcellus

text: female


text: Princeton University

text: public

text: ArrayExpress

characteristic: broker name

text: gray wolf

text: domesticated

text: Canis lupus

text: Canis lupus

text: brain frontal cortex

text: Canis lupus

text: female


text: Princeton University

text: public

text: ArrayExpress

text: domestic pig

characteristic: description

text: domesticated

text: Sus scrofa domesticus

text: Sus scrofa domesticus

text: brain frontal cortex

text: Sus scrofa domesticus

text: female


text: Princeton University

text: public

text: ArrayExpress

text: rabbit

text: wild

characteristic: domestication

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: brain frontal cortex

text: Oryctolagus cuniculus

text: male


text: Princeton University

text: public

text: ArrayExpress

text: pig

text: wild

text: Sus scrofa

text: Sus scrofa

text: brain frontal cortex

characteristic: organism part

text: Sus scrofa

text: female


text: Princeton University

text: public

text: ArrayExpress

text: Norway rat

text: aggressive

text: Rattus norvegicus

text: Rattus norvegicus

text: brain frontal cortex

text: Rattus norvegicus

text: female

characteristic: sex


text: Princeton University

text: public

text: ArrayExpress

text: rabbit

text: domesticated

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus domesticus

text: brain frontal cortex

text: Oryctolagus cuniculus

text: male

characteristic: title


text: Princeton University

characteristic: INSDC first public

text: public

text: ArrayExpress

text: domestic guinea pig

text: domesticated

text: Cavia porcellus

text: Cavia porcellus

text: brain frontal cortex

text: Cavia porcellus

text: male


text: Princeton University

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Brazilian guinea pig

text: wild

text: Cavia aperea

text: Cavia aperea

text: brain frontal cortex

text: Cavia aperea

text: female


text: Princeton University

text: public

characteristic: INSDC status

text: ArrayExpress

text: Brazilian guinea pig

text: wild

text: Cavia aperea

text: Cavia aperea

text: brain frontal cortex

text: Cavia aperea

text: male


text: Princeton University

text: public

characteristic: SRA accession

text: ArrayExpress

text: Norway rat

text: tame

text: Rattus norvegicus

text: Rattus norvegicus

text: brain frontal cortex

text: Rattus norvegicus

text: female


text: Princeton University

text: public

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: aggressive

text: Rattus norvegicus

text: Rattus norvegicus

text: brain frontal cortex

text: Rattus norvegicus

text: male


text: Princeton University

text: public

text: ArrayExpress

text: dog

characteristic: common name

text: domesticated

text: Canis lupus familiaris

text: Canis familiaris

text: brain frontal cortex

text: Canis lupus familiaris

text: male


characteristic: ENA-FIRST-PUBLIC

text: Princeton University

text: public

text: ArrayExpress

text: gray wolf

text: wild

text: Canis lupus

text: Canis lupus

text: brain frontal cortex

text: Canis lupus

text: female


text: Princeton University

text: public

text: ArrayExpress

text: gray wolf

text: wild

text: Canis lupus

characteristic: organism

text: Canis lupus

text: brain frontal cortex

text: Canis lupus

text: male


ASWT strain zebrafish

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: IGIB

text: public

text: ASWT strain zebrafish

text: zebrafish

text: Danio rerio

text: Danio rerio

text: A sequence-based variation map of zebrafish


ASWT Zebrafish

text: SRA-Webin

characteristic: External Id

text: IGIB

characteristic: INSDC center name

text: public

text: ASWT Zebrafish

text: zebrafish

text: Danio rerio

text: Danio rerio


ASWT strain of Zebrafish

text: SRA-Webin

text: IGIB

text: public

text: ASWT strain of Zebrafish

text: zebrafish

text: Danio rerio

text: Danio rerio


text: GSC

text: public

text: sample_AQN_4751_Fonges_Sol_Spatial_05-2010

text: fungi

text: Samples were pooled in this way (Tag_MID Tree_number material horizon) : ATGA 1 soil sup ATCA 2 soil sup AGTA 3 soil sup AGCA 4 soil sup ACTA 5 soil sup ACGA 6 soil sup TATA 7 soil sup TAGA 8 soil sup TACA 9 soil sup TGTA 10 soil sup TGCA 11 soil sup TCTA 12 soil sup TCGA 13 soil sup CATA 14 soil sup CAGA 15 soil sup CACA 16 soil sup CTGA 17 soil sup CTCA 18 soil sup CGTA 19 soil sup CGCA 20 soil sup ATAG 1 soil inf ATCG 2 soil inf AGAG 3 soil inf AGTG 4 soil inf AGCG 5 soil inf ACAG 6 soil inf ACTG 7 soil inf TATG 8 soil inf TACG 9 soil inf TGAG 10 soil inf TGTG 11 soil inf TGCG 12 soil inf TCAG 13 soil inf TCTG 14 soil inf CATG 15 soil inf CACG 16 soil inf CTAG 17 soil inf CTCG 18 soil inf CGAG 19 soil inf CGTG 20 soil inf

characteristic: description

text: Fungi

text: Fungi


text: GSC

text: public

text: sample_AQN_4751_Fonges_Racines_Spatial_05-2010

text: fungi

text: Samples were pooled in this way (Tag_MID Tree_number material horizon) : ATGA 1 root sup ATCA 2 root sup AGTA 3 root sup AGCA 4 root sup ACTA 5 root sup ACGA 6 root sup TATA 7 root sup TAGA 8 root sup TACA 9 root sup TGTA 10 root sup TGCA 11 root sup TCTA 12 root sup TCGA 13 root sup CATA 14 root sup CAGA 15 root sup CACA 16 root sup CTGA 17 root sup CTCA 18 root sup CGTA 19 root sup CGCA 20 root sup ATAG 1 root inf ATCG 2 root inf AGAG 3 root inf AGTG 4 root inf AGCG 5 root inf ACAG 6 root inf ACTG 7 root inf TATG 8 root inf TACG 9 root inf TGAG 10 root inf TGTG 11 root inf TGCG 12 root inf TCAG 13 root inf TCTG 14 root inf CATG 15 root inf CACG 16 root inf CTAG 17 root inf CTCG 18 root inf CGAG 19 root inf CGTG 20 root inf

text: Fungi

text: Fungi


text: GSC

text: public

text: fungi

text: Samples were pooled in this way (Tag_MID Tree_number material horizon) : ACAT 1 soil sup CGAC 2 soil sup CGCA 3 soil sup CGTC 4 soil sup CTGA 5 soil sup TACA 6 soil sup TACT 7 soil sup TAGC 8 soil sup TCAC 9 soil sup TCGT 10 soil sup TGAT 11 soil sup ACGA 12 soil sup TGTC 13 soil sup ACGT 14 soil sup ACTA 15 soil sup AGCA 16 soil sup AGTC 17 soil sup ATGA 18 soil sup CACT 19 soil sup CAGA 20 soil sup CATC 1 soil inf CGCT 2 soil inf AGAC 3 soil inf CGTA 4 soil inf CTAC 5 soil inf CTCA 6 soil inf CTGT 7 soil inf TAGT 8 soil inf TATC 9 soil inf TCGA 10 soil inf TCGC 11 soil inf TCTA 12 soil inf TGAC 13 soil inf AGCT 14 soil inf TGTA 15 soil inf ATAT 16 soil inf ATCA 17 soil inf ATGC 18 soil inf CAGC 19 soil inf CATA 20 soil inf

text: Fungi

text: Fungi


text: Embryonic day 13.5

characteristic: ArrayExpress-DevelopmentalStage

text: Homozygote

characteristic: ArrayExpress-Genotype

text: embryo head

characteristic: ArrayExpress-OrganismPart

text: No phenotype apparent as it does not manifest until adolescence

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Slc_tm1d_hom1-sc-2012-11-26T14:00:56Z-1517894

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Slc_tm1a_hom2-sc-2012-11-26T14:00:47Z-1517885

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Slc_tm1a_hom3-sc-2012-11-26T14:00:48Z-1517886

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

characteristic: ArrayExpress-DevelopmentalStage

text: Homozygote

characteristic: ArrayExpress-Genotype

text: embryo head

characteristic: ArrayExpress-OrganismPart

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

text: public

text: Slc_tm1a_hom4-sc-2012-11-26T14:00:49Z-1517887

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Slc_tm1c_hom3-sc-2012-11-26T14:00:56Z-1517893

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

characteristic: sample description

text: Mus musculus


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Slc_tm1c_hom1-sc-2012-11-26T14:00:53Z-1517891

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus

characteristic: strain


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: Slc_tm1a_hom1-sc-2012-11-26T14:00:46Z-1517884

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Slc_tm1c_hom2-sc-2012-11-26T14:00:54Z-1517892

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: embryo head

characteristic: ArrayExpress-OrganismPart

text: None, wild type control

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

text: public

text: Slc_tm1a_wt2-sc-2012-11-26T14:01:01Z-1517898

text: spiny mouse

text: Mus saxicola

text: RNA from E13.5 embryo heads

text: Mus saxicola


text: Embryonic day 13.5

text: Wildtype

text: embryo head

text: None, wild type control

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Slc_tm1b_wt1-sc-2012-11-26T14:01:02Z-1517899

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

characteristic: sample description

text: Mus musculus


text: Embryonic day 13.5

text: Wildtype

text: embryo head

text: None, wild type control

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Slc_tm1b_wt2-sc-2012-11-26T14:01:04Z-1517900

text: western wild mouse

text: Mus spretus

text: RNA from E13.5 embryo heads

text: Mus spretus

characteristic: strain


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: Slc_tm1b_hom3-sc-2012-11-26T14:00:53Z-1517890

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Slc_tm1b_hom2-sc-2012-11-26T14:00:51Z-1517889

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from E13.5 embryo heads

text: Mus musculus


text: Embryonic day 13.5

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: embryo head

characteristic: ArrayExpress-OrganismPart

text: None, wild type control

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

text: public

text: Slc_tm1a_wt1-sc-2012-11-26T14:01:00Z-1517897

text: shrew mouse

text: Mus pahari

text: RNA from E13.5 embryo heads

text: Mus pahari


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Slc_tm1d_hom3-sc-2012-11-26T14:00:59Z-1517896

text: western European house mouse

text: Mus musculus domesticus

text: RNA from E13.5 embryo heads

characteristic: sample description

text: Mus musculus domesticus


text: Embryonic day 13.5

text: Homozygote

text: embryo head

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Slc_tm1b_hom1-sc-2012-11-26T14:00:50Z-1517888

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus

characteristic: strain


text: Embryonic day 13.5

text: Wildtype

text: embryo head

text: None, wild type control

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: Slc_tm1d_wt2-sc-2012-11-26T14:01:08Z-1517904

characteristic: Submitter Id

text: Macedonian mouse

characteristic: common name

text: Mus macedonicus

text: RNA from E13.5 embryo heads

text: Mus macedonicus


text: Embryonic day 13.5

text: Wildtype

text: embryo head

text: None, wild type control

text: Mus musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Slc_tm1c_wt2-sc-2012-11-26T14:01:05Z-1517902

text: Cook's mouse

text: Mus cookii

characteristic: organism

text: RNA from E13.5 embryo heads

text: Mus cookii


text: Embryonic day 13.5

characteristic: ArrayExpress-DevelopmentalStage

text: Homozygote

characteristic: ArrayExpress-Genotype

text: embryo head

characteristic: ArrayExpress-OrganismPart

text: No phenotype apparent as it does not manifest until adolescence

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

text: public

text: Slc_tm1d_hom2-sc-2012-11-26T14:00:57Z-1517895

text: southeastern Asian house mouse

text: Mus musculus castaneus

text: RNA from E13.5 embryo heads

text: Mus musculus castaneus


text: Embryonic day 13.5

text: Wildtype

text: embryo head

text: None, wild type control

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Slc_tm1c_wt1-sc-2012-11-26T14:01:05Z-1517901

text: fawn-colored mouse

text: Mus cervicolor

text: RNA from E13.5 embryo heads

characteristic: sample description

text: Mus cervicolor


text: Embryonic day 13.5

text: Wildtype

text: embryo head

text: None, wild type control

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Slc_tm1d_wt1-sc-2012-11-26T14:01:07Z-1517903

text: house mouse

text: Mus musculus

text: RNA from E13.5 embryo heads

text: Mus musculus

characteristic: strain


text: male

characteristic: ArrayExpress-Sex

text: Nimbochromis linni

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: Nimbochromis_linni-sc-2012-12-14T14:26:37Z-1512702

characteristic: Submitter Id

text: elephantnose cichlid

characteristic: common name

text: Nimbochromis linni

text: No collection site info

text: Nimbochromis linni


text: male

text: Tremitochranus placodon

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Tremitochranus_placodon-sc-2012-12-14T14:26:30Z-1512695

text: snail-crusher hap

text: Trematocranus placodon

characteristic: organism

text: Southeast Arm

text: Trematocranus placodon


text: male

text: Aulonocara stuartgranti maisoni

characteristic: ArrayExpress-Species

text: SC

text: public

text: Aulonocara_stuartgranti__maisoni_-sc-2012-12-14T14:26:39Z-1512704

text: flavescent peacock cichlid

text: Aulonocara stuartgranti

text: No collection site info

text: Aulonocara stuartgranti


E-MTAB-1511:Baboon lymphoblast

text: EFPL

text: public

text: E-MTAB-1511:Baboon lymphoblast

text: ArrayExpress

characteristic: broker name

text: 26 CB1

characteristic: cell line

text: lymphoblastoid

characteristic: cell type

text: hamadryas baboon

text: Protocols: Lymphoblast cell lines were obtained for seven primate species. All cell lines were transformed by the Epstein Barr virus except for the macaque cell lines that were transformed by a herpesvirus. Cells were grown in suspension at a confluency of 200 000-1 x106 cells/ml in RPMI1640 media supplemented with 10% Fetal Bovine Serum and 2 mM L-glutamine. C57BL/6J mice were housed in the Biological Resources Unit under UK Home Office licensing. Tissue was obtained from at least two independent males and cross-linked as described in (Schmidt, Methods,2009). Male and female human tissue samples were obtained from biopsied tissue collected at Addenbrooke's Hospital, Cambridge, and were provided by the Biobank under human tissue license 08/H0308/117. Liver tissue was also obtained from the Liver Tissue Distribution Program (NIDDK contract number N01-DK-9-2310) at the University of Pittsburgh. 1x10^8 cells were cross-linked with 1% formaldehyde as previously described (Schmidt, Methods,2009). ChIP-seq assays were performed as previously described (Schmidt, 2009). Protein-bound DNA was immunoprecipitated with antibodies against CTCF (Millipore, 07-729), or YY1 (Santa Cruz, sc-281).

characteristic: description

text: Papio hamadryas

text: Papio hamadryas

text: Papio hamadryas

text: Baboon lymphoblast

characteristic: title


name: E-MTAB-1511:Rhesus macaque lymphoblast  4

text: EFPL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: lymphoblastoid

text: Rhesus monkey

text: Macaca mulatta

text: Macaca mulatta

text: Macaca mulatta

text: Rhesus macaque lymphoblast 4


E-MTAB-1511:Mouse liver 2

characteristic: ENA-FIRST-PUBLIC

text: EFPL

text: public

text: E-MTAB-1511:Mouse liver 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

characteristic: strain

text: Mouse liver 2


E-MTAB-1511:Human liver 1

text: EFPL

text: public

characteristic: SRA accession

text: E-MTAB-1511:Human liver 1

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Human liver 1


E-MTAB-1511:Orangutan lymphoblast 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EFPL

characteristic: INSDC center name

text: public

text: E-MTAB-1511:Orangutan lymphoblast 1

text: ArrayExpress

text: lymphoblastoid

text: Bornean orangutan

text: Pongo pygmaeus pygmaeus

text: Pongo pygmaeus pygmaeus

text: Pongo pygmaeus pygmaeus

text: Orangutan lymphoblast 1


E-MTAB-1511:Gorilla lymphoblast 1

text: EFPL

text: public

text: E-MTAB-1511:Gorilla lymphoblast 1

text: ArrayExpress

characteristic: broker name

text: EB(JC)

text: lymphoblastoid

text: western lowland gorilla

text: Gorilla gorilla gorilla

characteristic: organism

text: Gorilla gorilla gorilla

text: Gorilla gorilla gorilla

text: Gorilla lymphoblast 1


E-MTAB-1511:Human liver 2

text: EFPL

text: public

text: E-MTAB-1511:Human liver 2

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Human liver 2


E-MTAB-1511:Human lymphoblastoid 2

text: EFPL

text: public

text: E-MTAB-1511:Human lymphoblastoid 2

text: ArrayExpress

characteristic: cell line

text: lymphoblastoid

characteristic: cell type

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Human lymphoblastoid 2


E-MTAB-1511:Baboon lymphoblast 1

text: EFPL

text: public

text: E-MTAB-1511:Baboon lymphoblast 1

text: ArrayExpress

text: 26 CB1

text: lymphoblastoid

text: hamadryas baboon

characteristic: description

text: Papio hamadryas

text: Papio hamadryas

text: Papio hamadryas

text: Baboon lymphoblast 1

characteristic: title


E-MTAB-1511:Mouse liver 1

text: EFPL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-1511:Mouse liver 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Mouse liver 1


E-MTAB-1511:Chimpanzee lymphoblast 1

characteristic: ENA-FIRST-PUBLIC

text: EFPL

text: public

characteristic: INSDC status

text: E-MTAB-1511:Chimpanzee lymphoblast 1

text: ArrayExpress

text: lymphoblastoid

text: chimpanzee

text: Pan troglodytes

text: Pan troglodytes

text: Pan troglodytes

text: Chimpanzee lymphoblast 1


E-MTAB-1511:Human lymphoblastoid 1

text: EFPL

text: public

text: E-MTAB-1511:Human lymphoblastoid 1

text: ArrayExpress

text: lymphoblastoid

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Human lymphoblastoid 1


name: E-MTAB-1511:Cotton top tamarin lymphoblast

text: EFPL

text: public

text: ArrayExpress

text: lymphoblastoid

text: cotton-top tamarin

text: Saguinus oedipus

text: Sanguinus oedipus

text: Saguinus oedipus

text: Cotton top tamarin lymphoblast


name: E-MTAB-1511:Rhesus macaque lymphoblast  2

text: EFPL

text: public

text: ArrayExpress

text: lymphoblastoid

text: Rhesus monkey

text: Macaca mulatta

text: Macaca mulatta

text: Macaca mulatta

text: Rhesus macaque lymphoblast 2


name: E-MTAB-1511:Rhesus macaque lymphoblast 1

text: EFPL

text: public

text: ArrayExpress

text: lymphoblastoid

text: Rhesus monkey

text: Macaca mulatta

text: Macaca mulatta

text: Macaca mulatta

text: Rhesus macaque lymphoblast 1


E-MTAB-1511:Chimpanzee lymphoblast 3

text: EFPL

text: public

text: E-MTAB-1511:Chimpanzee lymphoblast 3

text: ArrayExpress

text: lymphoblastoid

text: chimpanzee

text: Pan troglodytes

text: Pan troglodytes

text: Pan troglodytes

text: Chimpanzee lymphoblast 3


name: E-MTAB-1511:Rhesus macaque lymphoblast  3

text: EFPL

text: public

text: ArrayExpress

text: lymphoblastoid

text: Rhesus monkey

text: Macaca mulatta

text: Macaca mulatta

text: Macaca mulatta

text: Rhesus macaque lymphoblast 3


E-MTAB-1511:Orangutan lymphoblast

text: EFPL

text: public

text: E-MTAB-1511:Orangutan lymphoblast

text: ArrayExpress

text: lymphoblastoid

text: Bornean orangutan

text: Pongo pygmaeus pygmaeus

text: Pongo pygmaeus pygmaeus

text: Pongo pygmaeus pygmaeus

text: Orangutan lymphoblast


E-MTAB-1511:Chimpanzee lymphoblast 2

text: EFPL

text: public

text: E-MTAB-1511:Chimpanzee lymphoblast 2

text: ArrayExpress

text: lymphoblastoid

text: chimpanzee

text: Pan troglodytes

text: Pan troglodytes

text: Pan troglodytes

text: Chimpanzee lymphoblast 2


text: thymus

characteristic: ArrayExpress-OrganismPart

text: normal

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: JAX_WT_thymus-sc-2013-04-22T14:39:50Z-1521990

text: house mouse

text: Mus musculus

text: DNA from thymus

characteristic: sample description

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

tag: Namespace:University of Pennsylvania, School of Medicine

characteristic: Submitter Id

text: 8 to 10 week

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: 8-10 week old male C57Bl/6 mice underwent partial hepatectomy as described in Mitchell et al Nature protocols 2008:;3:1167-1170 using isofluorane anesthesia between 8 AM and noon, and livers were harvested at the indicated time points after partial hepatectomy

text: adult

characteristic: developmental stage

text: mouse

text: Mus musculus

text: Mus musculus

characteristic: strain

text: partial hepatectomy

characteristic: treatment


text: thymus

text: cancer

text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: KALA_21_2C_lymphoma_thymus-sc-2013-04-22T14:40:13Z-1521991

text: house mouse

text: Mus musculus

characteristic: organism

text: DNA from thymus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: University of Pennsylvania, School of Medicine

text: public

characteristic: INSDC status

text: 8 to 10 week

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The whole or remaining liver was dissected from the mouse.

characteristic: description

text: adult

text: mouse

text: Mus musculus

text: Mus musculus

characteristic: title

text: no hepatectomy


text: stem cell

characteristic: ArrayExpress-OrganismPart

text: cancer

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: BCRABL_mouse-sc-2013-04-22T14:40:50Z-1521993

text: house mouse

text: Mus musculus

text: DNA from cancer stem cell

characteristic: sample description

text: Mus musculus


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 8 to 10 week

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: mouse

text: Mus musculus

text: Mus musculus

characteristic: strain

text: partial hepatectomy


text: normal

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Wild_type_mouse-sc-2013-04-22T14:40:34Z-1521992

text: house mouse

text: Mus musculus

characteristic: organism

text: DNA from wild type

text: Mus musculus


text: Streptococcus pneumoniae

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: PER

characteristic: collection date

text: Streptococcus

characteristic: genus

text: Peru

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: not known

characteristic: host health state

characteristic: isolate

text: not known

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: human

characteristic: specific host

text: Streptococcus pneumoniae; Streptococcus pneumoniae

characteristic: title

type: AMR curated data - CABBAGE

value: penicillin

value: broth dilution

value: resistant

value: Streptococcus pneumoniae

value: erythromycin

value: tetracycline

value: chloramphenicol


text: Streptococcus pneumoniae

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: strain


text: Streptococcus pneumoniae

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: FRA

characteristic: collection date

text: Streptococcus

characteristic: genus

text: France

text: Homo sapiens

text: disease: pharyngitis

text: pharynx

text: respiratory tract

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: human

value: mg/L

value: cefotaxime


text: 24916661; 31540216

text: Streptococcus pneumoniae

text: SC

text: public

text: USA

text: Streptococcus

text: USA: Georgia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: disease: pneumonia

characteristic: host health state

text: not known

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: human

characteristic: specific host

characteristic: title


text: Streptococcus pneumoniae

characteristic: ArrayExpress-Species

text: BS 19

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: BS 19


text: Streptococcus pneumoniae

text: BS 06

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TUR

characteristic: collection date

text: Streptococcus

text: Turkey

text: Homo sapiens

text: not known

characteristic: isolate

text: not known

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: human

characteristic: strain


text: Trypanosoma brucei

text: SC

text: public

text: Trypanosoma brucei

characteristic: organism

text: Trypanosoma brucei gambiense (2)

characteristic: sample description

text: Trypanosoma brucei


text: Trypanosoma brucei

characteristic: ArrayExpress-Species

text: SC

text: public

text: Trypanosoma brucei

text: Trypanosoma brucei gambiense (1)

text: Trypanosoma brucei


text: Trypanosoma brucei

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Trypanosoma brucei

text: Trypanosoma brucei rhodesiense

text: Trypanosoma brucei


text: Trypanosoma brucei

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei


text: Streptococcus suis

characteristic: External Id

text: SC

text: public

text: Streptococcus_suis_Tn920-sc-2011-06-02T17:04:18Z-1158438

text: Streptococcus suis

text: Streptococcus suis


text: SC

characteristic: INSDC center name

text: public

text: Streptococcus suis

text: TraDIS pig 1 Tn917 direct 2

text: Streptococcus suis


text: SC

text: public

characteristic: SRA accession

text: Streptococcus suis

text: TraDIS pig 1 Tn917 overnight 2

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn933-sc-2011-06-02T17:05:07Z-1158451

characteristic: Submitter Id

text: Streptococcus suis

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS pig 2 Tn917 input

text: Streptococcus suis


text: Streptococcus suis

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Streptococcus_suis_Tn919-sc-2011-06-02T17:04:10Z-1158437

text: Streptococcus suis

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn922-sc-2011-06-02T17:03:48Z-1158440

text: Streptococcus suis

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn923-sc-2011-06-02T17:03:58Z-1158441

text: Streptococcus suis

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS pig 2 Tn917 direct 1

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn921-sc-2011-06-02T17:04:24Z-1158439

text: Streptococcus suis

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS pig 2 Tn917 overnight 2

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn925-sc-2011-06-02T17:05:00Z-1158443

text: Streptococcus suis

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS pig 2 Tn917 direct 2

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS Pig 1 mariner library 2 input

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS pig 1 Tn917 input

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn917-sc-2011-06-02T17:03:41Z-1158435

text: Streptococcus suis

text: Streptococcus suis


text: Streptococcus suis

text: SC

text: public

text: Streptococcus_suis_Tn918-sc-2011-06-02T17:04:03Z-1158436

text: Streptococcus suis

text: Streptococcus suis


text: SC

text: public

text: Streptococcus suis

text: TraDIS pig 2 Tn917 ovrnight 1

text: Streptococcus suis


text: Leishmania tropica

text: SC

text: public

text: MHOM_IR_89_ARD_L2-sc-2011-09-16T14:44:24Z-1279036

text: Leishmania tropica

text: Leishmania tropica


text: Leishmania major x donovani

text: SC

text: public

text: MCAN_PT_96_IMT385-sc-2011-10-25T13:01:20Z-1291087

text: Leishmania major x donovani

text: Leishmania major x donovani


text: Leishmania tropica

text: SC

text: public

text: MHOM_TN_80_LEM163-sc-2011-09-16T14:44:25Z-1279038

text: Leishmania tropica

text: Leishmania tropica


text: Leishmania major x donovani

text: SC

text: public

text: MHOM_PT_94_IMT211-sc-2011-10-25T13:01:18Z-1291084

text: Leishmania major x donovani

text: Leishmania major x donovani


text: Leishmania major x donovani

text: SC

text: public

text: MCAN_PT_96_IMT384-sc-2011-10-25T13:01:20Z-1291086

text: Leishmania major x donovani

text: Leishmania major x donovani


text: Leishmania major x donovani

text: SC

text: public

text: MHOM_PT_94_IMT208-sc-2011-10-25T13:01:17Z-1291083

text: Leishmania major x donovani

text: Leishmania major x donovani


text: Leishmania tropica

text: SC

text: public

text: MHOM_SU_1974_K27-sc-2011-09-16T14:44:21Z-1279035

text: Leishmania tropica

text: Leishmania tropica


text: Leishmania tropica

text: Sinai IV

text: SC

text: public

text: MHOM_IQ_79_A_SINAI_IV-sc-2011-09-16T14:44:25Z-1279037

text: Leishmania tropica

text: Leishmania tropica

text: Sinai IV


text: Leishmania major x donovani

text: SC

text: public

text: MCAN_PT_99_IMT383-sc-2011-10-25T13:01:19Z-1291085

text: Leishmania major x donovani

text: Leishmania major x donovani


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: Control

characteristic: ArrayExpress-Compound

text: Cfp1 -/-

characteristic: ArrayExpress-Genotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: m_Cfp1null_RNA_1-sc-2012-10-30T15:20:50Z-1505500

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA-Seq Library PCR (cDNA from rRNA depleted total mouse ES cells RNA)

text: Mus musculus


text: Glia

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: m_Glia_5hmC-sc-2012-10-22T10:35:52Z-1500511

text: house mouse

text: Mus musculus

text: gDNA from FACS sorted glia

text: Mus musculus


text: mouse ES cells

text: Control

text: Cfp1 -/-

text: Anti Histone H3K4me3, Abcam, ab8582

characteristic: ArrayExpress-Immunoprecipitate

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: m_Cfp1null_H3K4me3_1-sc-2012-10-31T12:06:00Z-1505624

text: house mouse

text: Mus musculus

characteristic: organism

text: Library PCR form ChIP

characteristic: sample description

text: Mus musculus


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: Doxorubicin

text: 1 uM

characteristic: ArrayExpress-Dose

text: Wildtype (E14Tg2a)

text: Anti H3K9,K14 acetyl, Millipore 06-604

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: m_wtES_Dox_H3Ac_2-sc-2012-10-31T12:05:55Z-1505619

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

characteristic: ArrayExpress-Compound

text: 1 uM

text: Cfp1 -/-

characteristic: ArrayExpress-Genotype

text: Anti Histone H3K4me3, Abcam, ab8587

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: m_Cfp1null_Dox_H3K4me3_2-sc-2012-10-31T12:06:04Z-1505629

text: house mouse

characteristic: common name

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Control

text: Wildtype (E14Tg2a)

text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: m_wtES_RNA_2-sc-2012-10-30T15:20:52Z-1505502

text: house mouse

text: Mus musculus

text: Mus musculus


text: mouse ES cells

text: Control

text: Wildtype (E14Tg2a)

text: Anti H3K9,K14 acetyl, Millipore 06-603

characteristic: ArrayExpress-Immunoprecipitate

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: m_wtES_H3Ac_2-sc-2012-10-31T12:05:54Z-1505618

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 mM

text: Wildtype

text: male

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: m_wtES_Dox_RNA_1-sc-2012-10-30T15:20:49Z-1505499

text: house mouse

text: Mus musculus

characteristic: organism

characteristic: sample description

text: Mus musculus


text: Neurons

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: m_Neuron_5hmC-sc-2012-10-22T10:35:51Z-1500510

text: house mouse

text: Mus musculus

text: gDNA from FACS sorted neurons

text: Mus musculus

characteristic: strain


text: mouse ES cells

text: Doxorubicin

characteristic: ArrayExpress-Compound

text: 1 mM

characteristic: ArrayExpress-Dose

text: Wildtype (E14Tg2a)

characteristic: ArrayExpress-Genotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: m_wtES_Dox_RNA_2-sc-2012-10-30T15:20:53Z-1505503

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 uM

text: Cfp1 -/-

text: Anti H3K9,K14 acetyl, Millipore 06-606

characteristic: ArrayExpress-Immunoprecipitate

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: m_Cfp1null_Dox_H3Ac_2-sc-2012-10-31T12:05:57Z-1505621

text: house mouse

text: Mus musculus

characteristic: organism

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: Doxorubicin

text: 1 uM

text: Cfp1 -/-

text: Anti H3K9,K14 acetyl, Millipore 06-602

text: male

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: m_Cfp1null_Dox_H3Ac_1-sc-2012-10-31T12:05:52Z-1505617

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

characteristic: sample description

text: Mus musculus


text: mouse ES cells

text: Control

characteristic: ArrayExpress-Compound

text: Cfp1 -/-

characteristic: ArrayExpress-Genotype

text: Anti H3K9,K14 acetyl, Millipore 06-605

text: male

text: Mus musculus

text: SC

text: public

text: m_Cfp1null_H3Ac_2-sc-2012-10-31T12:05:56Z-1505620

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 uM

characteristic: ArrayExpress-Dose

text: Cfp1 -/-

text: Anti Histone H3K4me3, Abcam, ab8583

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: m_Cfp1null_Dox_H3K4me3_1-sc-2012-10-31T12:06:00Z-1505625

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Control

text: Wildtype (E14Tg2a)

text: Sonicated DNA control

text: male

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: m_wtES_Input-sc-2012-10-31T12:06:06Z-1505630

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Control

text: Wildtype (E14Tg2a)

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: m_wtES_RNA_1-sc-2012-10-30T15:20:48Z-1505498

text: house mouse

text: Mus musculus

text: Mus musculus


text: Glia

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: m_Glia_5mC-sc-2012-10-22T10:35:50Z-1500509

text: house mouse

text: Mus musculus

text: gDNA from FACS sorted glia

text: Mus musculus

characteristic: strain


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: Control

characteristic: ArrayExpress-Compound

text: Wildtype (E14Tg2a)

text: Anti Histone H3K4me3, Abcam, ab8580

characteristic: ArrayExpress-Immunoprecipitate

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: m_wtES_H3K4me3_1-sc-2012-10-31T12:05:57Z-1505622

text: house mouse

text: Mus musculus

characteristic: organism

text: Library PCR form ChIP

characteristic: sample description

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 uM

characteristic: ArrayExpress-Dose

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Anti H3K9,K14 acetyl, Millipore 06-600

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: m_wtES_Dox_H3Ac_1-sc-2012-10-31T12:05:50Z-1505615

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 uM

text: Wildtype (E14Tg2a)

text: Anti Histone H3K4me3, Abcam, ab8585

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: m_wtES_Dox_H3K4me3_2-sc-2012-10-31T12:06:03Z-1505627

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: Control

characteristic: ArrayExpress-Compound

text: Cfp1 -/-

text: male

text: Mus musculus

text: SC

text: public

text: m_Cfp1null_RNA_2-sc-2012-10-30T15:20:54Z-1505504

text: house mouse

text: Mus musculus

text: RNA-Seq Library PCR (cDNA from rRNA depleted total mouse ES cells RNA)

text: Mus musculus


text: mouse ES cells

text: Control

text: Cfp1 -/-

text: Sonicated DNA control

characteristic: ArrayExpress-Immunoprecipitate

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: m_Cfp1null_Input-sc-2012-10-31T12:06:06Z-1505631

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Control

text: Wildtype (E14Tg2a)

text: Anti Histone H3K4me3, Abcam, ab8584

text: male

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: m_wtES_H3K4me3_2-sc-2012-10-31T12:06:02Z-1505626

text: house mouse

text: Mus musculus

characteristic: organism

text: Library PCR form ChIP

characteristic: sample description

text: Mus musculus


text: mouse ES cells

text: Control

text: Cfp1 -/-

characteristic: ArrayExpress-Genotype

text: Anti H3K9,K14 acetyl, Millipore 06-601

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: m_Cfp1null_H3Ac_1-sc-2012-10-31T12:05:51Z-1505616

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 uM

characteristic: ArrayExpress-Dose

text: Wildtype (E14Tg2a)

text: Anti Histone H3K4me3, Abcam, ab8581

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

text: m_wtES_Dox_H3K4me3_1-sc-2012-10-31T12:05:59Z-1505623

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Control

text: Cfp1 -/-

text: Anti Histone H3K4me3, Abcam, ab8586

text: male

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: m_Cfp1null_H3K4me3_2-sc-2012-10-31T12:06:04Z-1505628

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

text: Control

text: Wildtype (E14Tg2a)

text: Anti H3K9,K14 acetyl, Millipore 06-599

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: m_wtES_H3Ac_1-sc-2012-10-31T12:05:49Z-1505614

text: house mouse

text: Mus musculus

text: Library PCR form ChIP

text: Mus musculus


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: Doxorubicin

characteristic: ArrayExpress-Compound

text: 1 mM

text: Cfp1 -/-

text: male

text: Mus musculus

text: SC

text: public

text: m_Cfp1null_Dox_RNA_2-sc-2012-10-30T15:20:55Z-1505505

text: house mouse

text: Mus musculus

text: Mus musculus


text: mouse ES cells

text: Doxorubicin

text: 1 mM

text: Cfp1 -/-

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: m_Cfp1null_Dox_RNA_1-sc-2012-10-30T15:20:51Z-1505501

text: house mouse

text: Mus musculus

text: Mus musculus


text: Neurons

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

text: m_Neuron_5mC-sc-2012-10-22T10:35:48Z-1500508

text: house mouse

text: Mus musculus

characteristic: organism

text: gDNA from FACS sorted neurons

text: Mus musculus

characteristic: strain


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Spleen DNA

characteristic: sample description

text: Mus musculus


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_7_1_sibling-sc-2012-11-27T16:30:52Z-1518904

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 7 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_9_2_mutant-sc-2012-11-27T16:31:04Z-1518915

text: zebrafish

text: Danio rerio

text: Morphologically abnormal zebrafish embryos from zmp_ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_7_6_sibling-sc-2012-11-27T16:30:56Z-1518908

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_3_mutant-sc-2012-11-27T16:31:07Z-1518917

text: zebrafish

text: Danio rerio

text: Morphologically abnormal zebrafish embryos from zmp_ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_9_2_sibling-sc-2012-11-27T16:31:06Z-1518916

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 9 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: ZMP_phenotype_8_2_sibling-sc-2012-11-27T16:31:01Z-1518912

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_4_mutant-sc-2012-11-27T16:31:09Z-1518919

text: zebrafish

text: Danio rerio

characteristic: organism

text: Morphologically abnormal zebrafish embryos from zmp_ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_7_6_mutant-sc-2012-11-27T16:30:55Z-1518907

text: zebrafish

text: Danio rerio

text: Morphologically abnormal zebrafish embryos from zmp_ph 7 knockout incross 6. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed

characteristic: strain


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_4_sibling-sc-2012-11-27T16:31:09Z-1518920

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 9 knockout incross 4. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: ZMP_phenotype_9_3_sibling-sc-2012-11-27T16:31:07Z-1518918

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 9 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: ZMP_phenotype_8_1_sibling-sc-2012-11-27T16:30:58Z-1518910

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 8 knockout incross 1. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_3_mutant-sc-2012-11-27T16:31:02Z-1518913

text: zebrafish

text: Danio rerio

text: Morphologically abnormal zebrafish embryos from zmp_ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

characteristic: sample description

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_8_2_mutant-sc-2012-11-27T16:30:59Z-1518911

text: zebrafish

text: Danio rerio

text: Morphologically abnormal zebrafish embryos from zmp_ph 8 knockout incross 2. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_7_3_mutant-sc-2012-11-27T16:30:53Z-1518905

text: zebrafish

text: Danio rerio

text: Morphologically abnormal zebrafish embryos from zmp_ph 7 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_3_sibling-sc-2012-11-27T16:31:03Z-1518914

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Morphologically normal sibling zebrafish embryos from zmp_ph 8 knockout incross 3. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed