characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Escherichia_coli_401596-sc-2012-01-13T20:11:34Z-1332525

text: Escherichia

characteristic: genus

text: Kenya

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: trimethoprim-sulfamethoxazole

value: broth dilution

value: susceptible

value: nitrofurantoin

value: chloramphenicol

value: trimethoprim


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

characteristic: SRA accession

text: Escherichia_coli_202973-sc-2012-01-13T20:11:03Z-1332482

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Escherichia

text: Mali

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: strain

characteristic: title

type: AMR curated data - CABBAGE

value: ceftriaxone

value: EUCAST

value: mg/L

value: Vitek

value: Escherichia coli

value: resistant

value: amikacin

value: cefepime

value: ceftazidime

value: gentamicin

value: meropenem

value: ampicillin

value: tetracycline


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Escherichia_coli_401174-sc-2012-01-13T20:11:56Z-1332557

text: Escherichia

characteristic: genus

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text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: tobramycin

value: broth dilution

value: susceptible

value: trimethoprim-sulfamethoxazole

value: azithromycin

value: norfloxacin


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: KEN

characteristic: SRA accession

text: Escherichia_coli_402048-sc-2012-01-13T20:11:06Z-1332487

characteristic: Submitter Id

text: Escherichia

text: Kenya

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: streptomycin

value: EUCAST

value: mg/L

value: trimethoprim

value: ceftriaxone

value: nitrofurantoin


text: SC

text: public

text: IND

text: Escherichia_coli_501029-sc-2012-01-13T20:11:15Z-1332498

characteristic: anonymized name

characteristic: collection date

text: Escherichia

text: India

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

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text: Homo sapiens

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value: cefepime

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value: chloramphenicol


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MLI

text: Escherichia_coli_202833-sc-2012-01-13T20:11:02Z-1332481

text: Escherichia

characteristic: genus

text: Mali

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: strain

characteristic: title

value: broth dilution

value: ampicillin

value: resistant

value: tobramycin

value: gentamicin

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characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

text: Escherichia_coli_200758-sc-2012-01-13T20:11:28Z-1332517

text: Escherichia

text: Mali

text: Homo sapiens

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: azithromycin

value: EUCAST

value: susceptible

value: ciprofloxacin

value: norfloxacin

value: streptomycin

value: tetracycline


text: SC

text: public

text: KEN

characteristic: SRA accession

text: Escherichia_coli_401480-sc-2012-01-13T20:12:04Z-1332568

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Escherichia

text: Kenya

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

value: mg/L

value: Vitek

value: Escherichia coli

value: trimethoprim-sulfamethoxazole

value: nitrofurantoin

value: cefepime


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IND

text: Escherichia_coli_504300-sc-2012-01-13T20:11:19Z-1332504

text: Escherichia

characteristic: genus

text: India

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

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text: Homo sapiens

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value: sulfamethoxazole

value: broth dilution

value: ceftriaxone

value: resistant

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IND

text: Escherichia_coli_500864-sc-2012-01-13T20:11:15Z-1332497

text: Escherichia

text: India

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: strain

characteristic: title

value: chloramphenicol

value: EUCAST

value: meropenem

value: ceftazidime

value: gentamicin


text: SC

text: public

text: KEN

characteristic: SRA accession

text: Escherichia_coli_403308-sc-2012-01-13T20:11:10Z-1332493

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Escherichia

text: Kenya

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: susceptible

value: azithromycin

value: norfloxacin

value: ciprofloxacin

value: streptomycin

value: ampicillin

value: amikacin


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MOZ

text: Escherichia_coli_300086-sc-2012-01-13T20:11:04Z-1332484

text: Escherichia

characteristic: genus

text: Mozambique

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

value: Vitek

value: Escherichia coli

value: tetracycline

value: mg/L

value: cefepime


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Escherichia_coli_403096-sc-2012-01-13T20:11:40Z-1332533

text: Kenya

text: Not known

text: faeces

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host


text: SC

text: public

text: MLI

characteristic: SRA accession

text: Escherichia_coli_200135-sc-2012-01-13T20:10:57Z-1332474

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Escherichia

text: Mali

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: strain

characteristic: title

value: broth dilution

value: resistant

value: tobramycin

value: trimethoprim-sulfamethoxazole

value: ceftriaxone


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Escherichia_coli_402977-sc-2012-01-13T20:11:39Z-1332532

text: Kenya

text: Not known

characteristic: host health state

text: faeces

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens


text: Escherichia coli

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Escherichia_coli_702074-sc-2012-01-13T20:11:25Z-1332512

text: Escherichia coli

characteristic: organism

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

text: Escherichia_coli_201381-sc-2012-01-13T20:11:29Z-1332518

text: Escherichia

characteristic: genus

text: Mali

text: Homo sapiens

characteristic: host

text: Not known

characteristic: isolate

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: EUCAST

value: susceptible

value: sulfamethoxazole

value: chloramphenicol

value: meropenem


text: SC

text: public

text: MLI

characteristic: SRA accession

text: Escherichia_coli_201191-sc-2012-01-13T20:11:50Z-1332548

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Escherichia

text: Mali

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: strain

value: nitrofurantoin

value: streptomycin

value: ciprofloxacin

value: norfloxacin

value: azithromycin

value: ceftazidime


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Escherichia_coli_700337-sc-2012-01-13T20:11:24Z-1332510

text: Pakistan

text: Not known

characteristic: host health state

text: faeces

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Escherichia_coli_504449-sc-2012-01-13T20:11:20Z-1332505

text: India

text: Not known

text: faeces

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens


text: SC

text: public

text: IND

characteristic: SRA accession

text: Escherichia_coli_503238-sc-2012-01-13T20:11:41Z-1332535

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

characteristic: genus

text: India

text: Homo sapiens

characteristic: host

text: Not known

characteristic: isolate

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: mg/L

value: Vitek

value: Escherichia coli

value: tetracycline

value: gentamicin

value: ampicillin

value: cefepime


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: MLI

text: Escherichia_coli_201589-sc-2012-01-13T20:11:52Z-1332550

characteristic: collection date

text: Escherichia

text: Mali

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: strain

value: trimethoprim

value: EUCAST

value: broth dilution

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value: amikacin

value: trimethoprim-sulfamethoxazole


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Escherichia_coli_504925-sc-2012-01-13T20:12:09Z-1332575

text: India

text: Not known

characteristic: host health state

text: faeces

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

characteristic: SRA accession

text: Escherichia_coli_200439-sc-2012-01-13T20:10:58Z-1332475

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

characteristic: genus

text: Mali

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: nitrofurantoin

value: streptomycin

value: tobramycin

value: chloramphenicol

value: norfloxacin

value: ciprofloxacin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GMB

text: Escherichia_coli_102014-sc-2012-01-13T20:11:47Z-1332543

characteristic: collection date

text: Escherichia

text: Gambia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: isolate

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

value: azithromycin

value: Vitek

value: Escherichia coli

value: ceftazidime

value: mg/L

value: sulfamethoxazole

value: meropenem

value: ceftriaxone


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MOZ

text: Escherichia_coli_300711-sc-2012-01-13T20:11:05Z-1332485

text: Escherichia

text: Mozambique

text: Homo sapiens

text: Not known

characteristic: host health state

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: specific host

characteristic: strain

value: EUCAST

value: broth dilution

value: resistant

value: tetracycline

value: susceptible

value: trimethoprim


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

characteristic: SRA accession

text: Escherichia_coli_204302-sc-2012-01-13T20:11:04Z-1332483

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: Mali

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: title

value: tobramycin

value: ampicillin

value: gentamicin

value: trimethoprim-sulfamethoxazole

value: amikacin

value: nitrofurantoin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: MLI

text: Escherichia_coli_200781-sc-2012-01-13T20:12:05Z-1332569

characteristic: collection date

text: Escherichia

characteristic: genus

text: Mali

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: cefepime

value: Vitek

value: Escherichia coli

value: ceftazidime

value: streptomycin

value: chloramphenicol

value: ciprofloxacin


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MOZ

text: Escherichia_coli_300814-sc-2012-01-13T20:11:54Z-1332554

text: Escherichia

text: Mozambique

text: Homo sapiens

text: Not known

characteristic: host health state

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

value: EUCAST

value: broth dilution

value: mg/L

value: resistant

value: meropenem

value: norfloxacin


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Escherichia_coli_700495-sc-2012-01-13T20:11:25Z-1332511

characteristic: Submitter Id

characteristic: anonymized name

text: Pakistan

text: Not known

text: faeces

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: specific host

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KEN

text: Escherichia_coli_400549-sc-2012-01-13T20:11:30Z-1332519

characteristic: collection date

text: Escherichia

characteristic: genus

text: Kenya

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: title

value: ampicillin

value: tetracycline

value: susceptible

value: gentamicin

value: sulfamethoxazole

value: trimethoprim

value: tobramycin


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GMB

text: Escherichia_coli_102485-sc-2012-01-13T20:10:56Z-1332473

text: Escherichia

text: Gambia

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: Vitek

value: Escherichia coli

value: azithromycin

value: ceftazidime

value: nitrofurantoin

value: amikacin


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: KEN

characteristic: SRA accession

text: Escherichia_coli_402097-sc-2012-01-13T20:11:58Z-1332560

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: Kenya

text: Homo sapiens

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

value: cefepime

value: EUCAST

value: broth dilution

value: mg/L

value: trimethoprim-sulfamethoxazole

value: ciprofloxacin

value: chloramphenicol


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GMB

text: Escherichia_coli_102010-sc-2012-01-13T20:11:46Z-1332542

characteristic: collection date

text: Escherichia

characteristic: genus

text: Gambia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: specific host

characteristic: strain

value: resistant

value: norfloxacin

value: susceptible

value: meropenem

value: ampicillin

value: streptomycin


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MLI

text: Escherichia_coli_202521-sc-2012-01-13T20:12:06Z-1332570

text: Escherichia

text: Mali

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: title

value: Vitek

value: Escherichia coli

value: azithromycin

value: ceftriaxone

value: tetracycline

value: tobramycin

value: sulfamethoxazole


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: KEN

characteristic: SRA accession

text: Escherichia_coli_402770-sc-2012-01-13T20:11:09Z-1332491

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: Kenya

text: Homo sapiens

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: EUCAST

value: broth dilution

value: mg/L

value: cefepime

value: gentamicin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: IND

text: Escherichia_coli_500618-sc-2012-01-13T20:11:12Z-1332495

characteristic: collection date

text: Escherichia

characteristic: genus

text: India

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

value: amikacin

value: trimethoprim-sulfamethoxazole

value: resistant

value: nitrofurantoin

value: intermediate

value: chloramphenicol

value: trimethoprim


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KEN

text: Escherichia_coli_402743-sc-2012-01-13T20:11:38Z-1332530

text: Escherichia

text: Kenya

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: specific host

characteristic: strain

value: ciprofloxacin

value: Vitek

value: susceptible

value: Escherichia coli

value: ampicillin

value: streptomycin

value: norfloxacin

value: ceftazidime


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

characteristic: SRA accession

text: Escherichia_coli_201534-sc-2012-01-13T20:10:59Z-1332477

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: Mali

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: title

value: EUCAST

value: broth dilution

value: mg/L

value: ceftriaxone

value: azithromycin

value: meropenem


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Escherichia_coli_403128-sc-2012-01-13T20:11:10Z-1332492

characteristic: collection date

text: Kenya

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: faeces

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens


text: Escherichia coli

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Escherichia_coli_400792-sc-2012-01-13T20:11:32Z-1332522

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: MLI

text: Escherichia_coli_202621-sc-2012-01-13T20:11:53Z-1332552

text: Escherichia

characteristic: genus

text: Mali

text: Homo sapiens

characteristic: host

text: Not known

characteristic: isolate

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

value: cefepime

value: amikacin

value: tobramycin

value: resistant

value: tetracycline


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

characteristic: SRA accession

text: Escherichia_coli_204263-sc-2012-01-13T20:12:07Z-1332572

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: Mali

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: strain

characteristic: title

value: Vitek

value: susceptible

value: chloramphenicol

value: trimethoprim-sulfamethoxazole


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Escherichia_coli_402780-sc-2012-01-13T20:11:38Z-1332531

characteristic: collection date

text: Kenya

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: faeces

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: GMB

text: Escherichia_coli_102298-sc-2012-01-13T20:10:55Z-1332471

text: Escherichia

characteristic: genus

text: Gambia

text: Homo sapiens

characteristic: host

text: Not known

characteristic: isolate

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

value: Escherichia coli

value: nitrofurantoin

value: norfloxacin

value: ampicillin


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MLI

characteristic: SRA accession

text: Escherichia_coli_203470-sc-2012-01-13T20:12:06Z-1332571

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: Mali

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: specific host

value: EUCAST

value: broth dilution

value: mg/L

value: trimethoprim

value: ceftazidime


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: KEN

text: Escherichia_coli_400714-sc-2012-01-13T20:11:31Z-1332521

characteristic: collection date

text: Escherichia

text: Kenya

text: Homo sapiens

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: strain

characteristic: title

value: amikacin

value: meropenem

value: ceftriaxone

value: cefepime


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: IND

text: Escherichia_coli_500275-sc-2012-01-13T20:11:11Z-1332494

text: Escherichia

characteristic: genus

text: India

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

characteristic: isolate

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

value: Vitek

value: azithromycin

value: tobramycin

value: ciprofloxacin

value: gentamicin


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: IND

characteristic: SRA accession

text: Escherichia_coli_504225-sc-2012-01-13T20:11:19Z-1332503

characteristic: Submitter Id

characteristic: anonymized name

text: Escherichia

text: India

text: Homo sapiens

text: Not known

text: faeces

characteristic: isolation source

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

characteristic: serovar

text: Homo sapiens

value: susceptible

value: Escherichia coli

value: streptomycin

value: resistant

value: tetracycline

value: nitrofurantoin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Escherichia_coli_702161-sc-2012-01-13T20:11:26Z-1332513

characteristic: collection date

text: Pakistan

text: Not known

text: faeces

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: specific host


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: MLI

text: Escherichia_coli_202423-sc-2012-01-13T20:10:59Z-1332478

text: Escherichia

characteristic: genus

text: Mali

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

text: faeces

text: gastrointestinal system

text: Escherichia coli

text: Escherichia coli

text: Not known

text: Homo sapiens

characteristic: strain

characteristic: title

value: EUCAST

value: broth dilution

value: mg/L

value: ampicillin

value: trimethoprim-sulfamethoxazole


text: Streptococcus agalactiae

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus agalactiae

text: Streptococcus agalactiae


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: anonymized name

text: USA

characteristic: country

text: cystitis

characteristic: host status

text: urine

characteristic: isolation source

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: human


text: Mouse

text: SC

characteristic: INSDC first public

text: public

text: SC_MLMC5288419-sc-2012-02-09T08:46:30Z-1350724

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_MLMC5288393-sc-2012-02-09T08:46:12Z-1350698

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_MLMC5288420-sc-2012-02-09T08:46:31Z-1350725

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-75:Cell culture 2

text: Institut Pasteur

text: public

characteristic: StrainOrLine

text: E-MTAB-75:Cell culture 2

tag: Namespace:Institut Pasteur

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: Cells were grown to mid-exponential phase in YPD for a wild type strain (condion 1) and in YPD supplemented with doxycycline (10µg/ml) for 16h for the mutant strain (condition 2).

characteristic: description

text: MAT_ ura3_0 leu2_0 his3_1 CBP20-TAP::HIS3 rrp6_::pGID2 Hygrotet07-TRF4

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Cell culture 2

characteristic: title

type: has member


text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 3GMUS5291851-sc-2012-02-09T14:15:29Z-1354751

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: 3GMUS5276393-sc-2012-01-25T14:20:31Z-1337440

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC first public

text: public

text: 3GMUS5276396-sc-2012-01-25T14:20:33Z-1337443

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: SC

text: public

text: 3GMUS5276400-sc-2012-01-25T14:20:36Z-1337447

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: 3GMUS5276401-sc-2012-01-25T14:20:37Z-1337448

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 3GMUS5276394-sc-2012-01-25T14:20:31Z-1337441

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 3GMUS5276392-sc-2012-01-25T14:20:30Z-1337439

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 3GMUS5276399-sc-2012-01-25T14:20:35Z-1337446

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 3GMUS5276395-sc-2012-01-25T14:20:32Z-1337442

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 3GMUS5276391-sc-2012-01-25T14:20:30Z-1337438

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 3GMUS5276397-sc-2012-01-25T14:20:33Z-1337444

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: m_SpermLowNaCl_CXXC_M-sc-2010-03-05-7579

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dendritic cells

characteristic: ArrayExpress-CellType

text: wt

characteristic: ArrayExpress-Genotype

text: Anti H3 Acetyl K9, K14 (Millipore 06-499)

characteristic: ArrayExpress-Immunoprecipitate

text: Dendritic cells

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

text: SC

text: public

text: m_DC_wt_MED_Input-sc-2012-02-16T09:26:22Z-1361695

text: house mouse

text: Mus musculus

text: DC input DNA from ChIP experiment

characteristic: sample description

text: Mus musculus


text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dendritic cells

text: wt

text: Dendritic cells

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: m_DC_wt_SEA_H3Ac-sc-2012-02-16T09:26:27Z-1361697

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: SC

text: public

characteristic: SRA accession

text: m_p_m_highNaCl_CXXC_M-sc-2010-03-05-7576

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: to be provided

text: to be provided

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: m_E14Tg2a_Neurons_d6_diff2-sc-2012-06-20T13:55:32Z-1259170

text: house mouse

text: Mus musculus

text: cDNA from total RNA prepared using ScriptSeq kit (Epicentre)

text: Mus musculus


text: to be provided

text: to be provided

text: Mus Musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: m_E14Tg2a_EB_d8_diff2-sc-2012-06-20T13:54:51Z-1259168

text: house mouse

text: Mus musculus

text: Mus musculus


text: to be provided

text: to be provided

text: Mus Musculus

text: SC

text: public

text: m_E14Tg2a_ESC_d0_diff1-sc-2012-06-20T13:53:39Z-1259165

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: to be provided

text: to be provided

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: m_E14Tg2a_EB_d8_diff1-sc-2012-06-20T13:54:29Z-1259167

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dendritic cells

text: Mbd2 -/-

text: Dendritic cells

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: m_DC_DEL_MED_H3Ac-sc-2012-02-16T09:26:29Z-1361699

text: house mouse

text: Mus musculus

characteristic: organism

text: DNA isolated from ChIP

text: Mus musculus


text: to be provided

text: to be provided

text: Mus Musculus

text: SC

text: public

text: m_E14Tg2a_Neurons_d6_diff1-sc-2012-06-20T13:55:08Z-1259169

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dendritic cells

characteristic: ArrayExpress-CellType

text: wt

characteristic: ArrayExpress-Genotype

text: Dendritic cells

text: male

text: Mus musculus

text: SC

text: public

text: m_DC_wt_MED_H3Ac-sc-2012-02-16T09:26:25Z-1361696

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: SC

text: public

text: m_ESCFP1minLowNaClCXXC1_M-sc-2011-01-27-44820

text: house mouse

text: Mus musculus

text: Mus musculus


text: to be provided

characteristic: ArrayExpress-Immunoprecipitate

text: to be provided

characteristic: ArrayExpress-OrganismPart

text: Mus Musculus

text: SC

text: public

text: m_E14Tg2a_ESC_d0_diff2-sc-2012-06-20T13:54:09Z-1259166

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dendritic cells

text: Mbd2 -/-

text: Dendritic cells

text: male

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: m_DC_DEL_SEA_H3Ac-sc-2012-02-16T09:26:29Z-1361700

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

characteristic: sample description

text: Mus musculus


text: SC

text: public

characteristic: INSDC status

text: m_CerebellumLowNaCl_CXXC_M-sc-2010-03-05-7582

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dendritic cells

text: Mbd2 -/-

text: Dendritic cells

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: m_DC_DEL_MED_Input-sc-2012-02-16T09:26:28Z-1361698

text: house mouse

text: Mus musculus

text: DC input DNA from ChIP experiment

text: Mus musculus


name: E-MTAB-970:E9.5 Sox17^GFP+EpCAM+ cells 2

characteristic: ENA-LAST-UPDATE

text: Vanderbilt University

text: public

characteristic: StrainOrLine

tag: Namespace:Vanderbilt University

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Sox17 expressing cell in ventral pancreatic bud

characteristic: cell type

text: house mouse

text: pool of 27 E9.5 Sox17^GFP/+ embryos Protocols: Embryos were isolated from TgH(Sox17.Cre.GFP)Agb mice; the presence of vaginal plug at noon was considered as E0.5. Embryos were genotyped by fluorescence microscopy. The mid gut areas, including ventral pancreatic buds, were dissected by cutting out on the upper region from the heart and the lower region below the ventral pancreas. The dissection event was confirmed by checking the GFP fluorescence. Tissues were dissociated with Accumax (Sigma) at 37 C. Cells were immuno-labeled with anti-EpCAM (G8.8, Santa Cruz) antibody. Flow Cytometry experiments were performed in the VMC Flow Cytometry Shared Resource on a BD Aria I or II.

characteristic: description

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: E9.5 Sox17^GFP+EpCAM+ cells 2

characteristic: title


name: E-MTAB-970:E9.5 Sox17^GFP+EpCAM+ cells 3

characteristic: External Id

text: Vanderbilt University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: pool of 26 E9.5 Sox17^GFP/+ embryos Protocols: Embryos were isolated from TgH(Sox17.Cre.GFP)Agb mice; the presence of vaginal plug at noon was considered as E0.5. Embryos were genotyped by fluorescence microscopy. The mid gut areas, including ventral pancreatic buds, were dissected by cutting out on the upper region from the heart and the lower region below the ventral pancreas. The dissection event was confirmed by checking the GFP fluorescence. Tissues were dissociated with Accumax (Sigma) at 37 C. Cells were immuno-labeled with anti-EpCAM (G8.8, Santa Cruz) antibody. Flow Cytometry experiments were performed in the VMC Flow Cytometry Shared Resource on a BD Aria I or II.

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: E9.5 Sox17^GFP+EpCAM+ cells 3


name: E-MTAB-970:E9.5 Sox17^GFP+EpCAM- cells 2

text: Vanderbilt University

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Sox17 expressing endothelial cell in mid gut

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: E9.5 Sox17^GFP+EpCAM- cells 2


name: E-MTAB-970:E9.5 Sox17^GFP+EpCAM+ cells 1

text: Vanderbilt University

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: pool of 29 E9.5 Sox17^GFP/+ embryos Protocols: Embryos were isolated from TgH(Sox17.Cre.GFP)Agb mice; the presence of vaginal plug at noon was considered as E0.5. Embryos were genotyped by fluorescence microscopy. The mid gut areas, including ventral pancreatic buds, were dissected by cutting out on the upper region from the heart and the lower region below the ventral pancreas. The dissection event was confirmed by checking the GFP fluorescence. Tissues were dissociated with Accumax (Sigma) at 37 C. Cells were immuno-labeled with anti-EpCAM (G8.8, Santa Cruz) antibody. Flow Cytometry experiments were performed in the VMC Flow Cytometry Shared Resource on a BD Aria I or II.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: E9.5 Sox17^GFP+EpCAM+ cells 1


name: E-MTAB-970:E9.5 Sox17^GFP+EpCAM- cells 3

characteristic: ENA-FIRST-PUBLIC

text: Vanderbilt University

text: public

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: E9.5 Sox17^GFP+EpCAM- cells 3


name: E-MTAB-970:E9.5 Sox17^GFP+EpCAM- cells 1

text: Vanderbilt University

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: E9.5 Sox17^GFP+EpCAM- cells 1


characteristic: ENA-LAST-UPDATE

text: EMBL Genomics Core Facility

text: public

tag: Namespace:EMBL Genomics Core Facility

characteristic: bio source type

text: ArrayExpress

text: embryonic stem

text: house mouse

text: Protocols: ES cells were cultured in 2i defined medium, a 1:1 mixture of DMEM/F-12 and Neurobasal with N2 and B27 supplements, 1uM PD0325901 and 3uM CHIRON99021. Total RNA was extracted using the TRIzol method followed by treatment with TURBO DNase (Ambion). Polyadenylated transcripts were selected from 2 µg total RNA using Sera-Mag beads (Thermo Scientific). Between 60 and 100 ng mRNA was then sheared to approximately 200 nt fragments by focused ultrasound on the Covaris S2 using the following parameters: Duty Cycle =10%, Intensity = 5, Cycles Per Burst = 200, for 75s with frequency sweeping enabled. First-strand cDNA synthesis was performed at 50°C for 2 hours using SuperScript III (Invitrogen) and random hexamer primers, followed by second-strand synthesis with DNA Polymerase I at 16°C for 2 hours in the presence of RNaseH. End repair of double-stranded cDNA products was carried out with T4 DNA polymerase and T4 polynucleotide kinase (New England Biolabs). Blunted, phosphorylated cDNA fragments were then 3'-adenylated via Klenow fragment and ligated to sequencing adapters (Illumina) by T4 DNA ligase at 20°C for 30 minutes. PCR amplification of library constructs was carried out with Phusion DNA polymerase (Finnzymes) for 13 cycles. Purification of reaction products between each step was performed with Ampure XP paramagnetic beads (Beckman Coulter). Prior to sequencing, the molarity and size distribution of the libraries was assessed by DNA 1000 microfluidic chips on the Agilent 2100 Bioanalyzer.

text: normal

characteristic: disease state

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_GTR5290690-sc-2012-03-01T08:09:00Z-1353413

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus musculus

text: SC

text: public

text: SC_GTR5296931-sc-2012-03-01T08:10:29Z-1360920

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus musculus

text: SC

text: public

text: SC_GTR5290695-sc-2012-03-01T08:10:27Z-1353418

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus musculus

text: SC

text: public

text: SC_GTR5290691-sc-2012-03-01T08:10:00Z-1353414

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus musculus

text: SC

text: public

text: SC_GTR5290694-sc-2012-03-01T08:10:03Z-1353417

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus musculus

text: SC

text: public

text: SC_GTR5296930-sc-2012-03-01T08:10:28Z-1360919

text: house mouse

text: Mus musculus

text: Mus musculus


text: CRUK-CRI

text: public

text: E-MTAB-1008:iCLIP_Nova_mm_Brain_20100320_LUjn01_3

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mouse brain tissue (Nova iCLIP) or COS-7 cells grown in a tissue culture plate (mutant NSUN2 iCLIP). Tissue was dissociated in ice-cold PBS buffer (Nova iCLIP) or medium was replaced (mutant NSUN2 iCLIP). Material was then subjected to UV-C irradiation. Cells were then precipitated by centrifugation for 1 min at 14000 rpm and snap-frozen on dry ice. iCLIP protocol was followed to isolate RNA bound to Nova protein or mutant NSUN2 protein (C271A) and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction, and are specified below for each sequencing run. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina pair-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3

characteristic: description

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

characteristic: title


characteristic: External Id

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-1008:iCLIP_Nova_mm_Brain_20100320_LUjn01_2

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-1008:iCLIP_Nova_mm_Brain_20100320_LUjn01_6

text: ArrayExpress

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: CRUK-CRI

text: public

characteristic: SRA accession

text: E-MTAB-1008:iCLIP_NSUN2_Cos7_20110811_LUe37_2

text: ArrayExpress

characteristic: cell line

text: grivet

text: Chlorocebus aethiops

text: Chlorocebus aethiops

text: Chlorocebus aethiops


text: Sus scrofa

characteristic: ArrayExpress-Species

text: SC

text: public

text: WTSI_1061_1P12-sc-2012-03-09T14:05:59Z-1361577

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_153G11-sc-2012-03-09T14:05:23Z-1361535

characteristic: Submitter Id

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_6L15-sc-2012-03-09T14:06:17Z-1361596

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_222A9-sc-2012-03-09T14:05:58Z-1361576

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_7H13-sc-2012-03-09T14:06:17Z-1361597

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5C10-sc-2012-03-09T14:06:01Z-1361579

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_43E3-sc-2012-03-09T14:06:18Z-1361598

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5C12-sc-2012-03-09T14:06:02Z-1361580

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5A12-sc-2012-03-09T14:06:00Z-1361578

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_93B18-sc-2012-03-09T14:05:20Z-1361531

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_94P17-sc-2012-03-09T14:05:21Z-1361532

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_148O12-sc-2012-03-09T14:05:22Z-1361533

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_149E11-sc-2012-03-09T14:05:22Z-1361534

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_469A12-sc-2012-03-09T14:05:37Z-1361550

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_18E24-sc-2012-03-09T14:05:16Z-1361526

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_32H1-sc-2012-03-09T14:05:17Z-1361527

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_449M5-sc-2012-03-09T14:05:36Z-1361549

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_43F13-sc-2012-03-09T14:05:19Z-1361529

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_54I22-sc-2012-03-09T14:05:38Z-1361552

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_39B5-sc-2012-03-09T14:05:17Z-1361528

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_72A20-sc-2012-03-09T14:05:39Z-1361553

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_58J5-sc-2012-03-09T14:05:19Z-1361530

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_469M5-sc-2012-03-09T14:05:37Z-1361551

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_127G12-sc-2012-03-09T14:05:41Z-1361555

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_113E21-sc-2012-03-09T14:05:40Z-1361554

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1062_68I6-sc-2012-03-09T14:05:56Z-1361573

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1062_76D6-sc-2012-03-09T14:05:56Z-1361574

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_723C8-sc-2012-03-09T14:05:57Z-1361575

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_392F11-sc-2012-03-09T14:05:34Z-1361547

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_379A15-sc-2012-03-09T14:05:33Z-1361546

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_400O21-sc-2012-03-09T14:05:35Z-1361548

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1062_14B16-sc-2012-03-09T14:05:53Z-1361569

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_846G17-sc-2012-03-09T14:05:51Z-1361568

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1062_25L3-sc-2012-03-09T14:05:53Z-1361570

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1062_31O9-sc-2012-03-09T14:05:54Z-1361571

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1062_61J21-sc-2012-03-09T14:05:55Z-1361572

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_7L17-sc-2012-03-09T14:05:15Z-1361525

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_532K23-sc-2012-03-09T14:05:50Z-1361566

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_587P11-sc-2012-03-09T14:05:51Z-1361567

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_6L3-sc-2012-03-09T14:06:16Z-1361595

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5O10-sc-2012-03-09T14:06:15Z-1361594

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5O2-sc-2012-03-09T14:06:13Z-1361593

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5K10-sc-2012-03-09T14:06:12Z-1361592

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5H10-sc-2012-03-09T14:06:11Z-1361590

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5H12-sc-2012-03-09T14:06:11Z-1361591

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5H2-sc-2012-03-09T14:06:10Z-1361589

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5G10-sc-2012-03-09T14:06:09Z-1361588

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5G2-sc-2012-03-09T14:06:08Z-1361587

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5F10-sc-2012-03-09T14:06:08Z-1361586

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_159L14-sc-2012-03-09T14:05:25Z-1361537

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_259N17-sc-2012-03-09T14:05:44Z-1361559

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_171H12-sc-2012-03-09T14:05:26Z-1361538

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_195I15-sc-2012-03-09T14:05:45Z-1361560

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_179C9-sc-2012-03-09T14:05:42Z-1361556

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_183J18-sc-2012-03-09T14:05:27Z-1361539

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_232O6-sc-2012-03-09T14:05:43Z-1361558

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_187P3-sc-2012-03-09T14:05:28Z-1361540

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: PigE_227G14-sc-2012-03-09T14:05:43Z-1361557

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_404B14-sc-2012-03-09T14:05:48Z-1361564

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_328I2-sc-2012-03-09T14:05:48Z-1361563

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_522O17-sc-2012-03-09T14:05:49Z-1361565

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_198O14-sc-2012-03-09T14:05:46Z-1361561

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_155B18-sc-2012-03-09T14:05:24Z-1361536

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1005_284E2-sc-2012-03-09T14:05:47Z-1361562

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5F5-sc-2012-03-09T14:06:07Z-1361585

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_198B5-sc-2012-03-09T14:05:28Z-1361541

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_208O6-sc-2012-03-09T14:05:29Z-1361542

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5D9-sc-2012-03-09T14:06:04Z-1361583

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_285E1-sc-2012-03-09T14:05:30Z-1361543

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5D10-sc-2012-03-09T14:06:05Z-1361584

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5D2-sc-2012-03-09T14:06:03Z-1361581

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_286H23-sc-2012-03-09T14:05:31Z-1361544

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: CH242_352A13-sc-2012-03-09T14:05:32Z-1361545

text: pig

text: Sus scrofa

text: Sus scrofa


text: Sus scrofa

text: SC

text: public

text: WTSI_1061_5D8-sc-2012-03-09T14:06:03Z-1361582

text: pig

text: Sus scrofa

text: Sus scrofa


barley ETCs

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: IPK-Gatersleben

text: public

text: barley ETCs

text: domesticated barley

text: Differentiating barley ETCs (3 DAF, 5 DAF, 7 DAF) have been isolated from cryosections of barley grains using laser-assisted microdissection. Total RNA was extracted from tissue sections and mRNA was amplified by one round of T7-based amplification. The three antisense (a)RNA populations were pooled in equal amounts and first strand cDNA synthesis was primed with a N6 randomized primer. After ligation of 454 adapters and PCR-amplification (20 cycles), cDNA was normalized and fractioned cDNA in the size range of 400 to 600 nucleotides (gel fractioning) was used for GS FLX Titanium sequencing.

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: Pool of differentiating barley endosperm transfer cells from grains (3 DAF, 5 DAF, 7 DAF).


text: SRA-Webin

text: MDC

text: public

text: Norway rat

text: SD/F344/BN RBM20_(-/-); mixed SD/F344/BN with homozygous RBM20 deletion male

characteristic: description

text: Rattus norvegicus

text: Rattus norvegicus

text: male

characteristic: sex

text: SD/F344/BN RBM20_(-/-)


text: SRA-Webin

text: MDC

text: public

text: Norway rat

text: SD/F344/BN RBM20_(+/+); mixed SD/F344/BN without RBM20 deletion male

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: SD/F344/BN RBM20_(+/+)

characteristic: title


text: SRA-Webin

characteristic: External Id

text: MDC

text: public

text: Norway rat

text: SD/F344/BN RBM20_(-/+); mixed SD/F344/BN with heterozygous RBM20 deletion male

text: Rattus norvegicus

text: Rattus norvegicus

text: male

text: SD/F344/BN RBM20_(-/+)


text: SRA-Webin

text: MDC

characteristic: INSDC center name

text: public

text: Norway rat

text: SD/F344/BN RBM20_(+/+); mixed SD/F344/BN without RBM20 deletion female

text: Rattus norvegicus

text: Rattus norvegicus

text: female

text: SD/F344/BN RBM20_(+/+)


text: SRA-Webin

text: MDC

characteristic: INSDC first public

text: public

text: Norway rat

text: SD/F344/BN RBM20_(-/+); mixed SD/F344/BN with heterozygous RBM20 deletion female

text: Rattus norvegicus

text: Rattus norvegicus

text: female

text: SD/F344/BN RBM20_(-/+)


E-MTAB-1085:Cell culture 1

text: public

text: E-MTAB-1085:Cell culture 1

tag: Namespace:EMBL Genomics Core Facility, Heidelberg, Germany

text: ArrayExpress

characteristic: broker name

text: embryonic cell

characteristic: cell type

text: fruit fly

characteristic: common name

text: Protocols: S2 cells were grown in Schneiders Media (Invitrogen) supplemented with 10% of heat-inactivated bovine fetal serum to a density of 1 million cells per ml. 30ml cell suspension were spun down and the cell pellet was resuspended in 1 ml of cross-linking solution (50 mM HEPES, 100 mM NaCl, 1 mM EDTA, 0.5 mM EGTA). 37% formaldehyde was added to a final concentration of 1.8%. The tube was rotated at room temperature for 15 minutes and the reaction was quenched with 2.5 M glycine at a final concentration of 125 mM for 5 minutes. The fixed cells were washed 3 times for 5 minutes each with rinse buffer 1 (10 mM HEPES pH 7.5, 10 mM EDTA, 0.5 mM EGTA, 0.25% Triton X-100) and 5 times for 5 minutes each with rinse buffer 2 (10 mM HEPES pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 200 mM NaCl). Finally, the cells were washed 3 times in RIPA buffer (25 mM HEPES pH 7.5, 140 mM NaCl, 1 mM EDTA, 1% Triton-X 100, 0.1% SDS, 0.1% DOC). The cells were sonicated 30 x 20 seconds using a Branson 250 sonicator at pulse 40, intensity 3%. The chromatin should be sheared into fragments with average length of 200 bp. Samples were centrifuged at maximum speed and the supernatant was used for the subsequent steps. To reverse cross-linking, samples were incubated at 65C overnight in TE buffer, followed by a treatment with RNaseA (0.2 mg/ml) for 30 min at 37C, and with Proteinase K (0.05 mg/ml) for 2 hours at 50C. Finally, DNA was purified using Minelute columns (Qiagen).

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

text: Cell culture 1


E-MTAB-1084:Cell culture 2

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-1084:Cell culture 2

tag: Namespace:MPI for Molecular Genetics, Berlin, Germany

text: ArrayExpress

text: embryonic cell

text: fruit fly

text: Protocols: S2 cells were grown in Schneiders Media (Invitrogen) supplemented with 10% of heat-inactivated bovine fetal serum to a density of 1 million cells per ml. Cells at a density of 1 million per ml were transfected with 10 ug dsRNA against NSL1, NSL3 or GFP using Lipofectamine RNAiMAX (Invitrogen) according to manufacturers instructions. The cells were harvested after 6 days. 30 ml cell suspension were spun down and the cell pellet was resuspended in 1 ml of cross-linking solution (50 mM HEPES, 100 mM NaCl, 1 mM EDTA, 0.5 mM EGTA). 37% formaldehyde was added to a final concentration of 1.8%. The tube was rotated at room temperature for 15 minutes and the reaction was quenched with 2.5 M glycine at a final concentration of 125 mM for 5 minutes. The fixed cells were washed 3 times for 5 minutes each with rinse buffer 1 (10 mM HEPES pH 7.5, 10 mM EDTA, 0.5 mM EGTA, 0.25% Triton X-100) and 5 times for 5 minutes each with rinse buffer 2 (10 mM HEPES pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 200 mM NaCl). Finally, the cells were washed 3 times in RIPA buffer (25 mM HEPES pH 7.5, 140 mM NaCl, 1 mM EDTA, 1% Triton-X 100, 0.1% SDS, 0.1% DOC). The cells were sonicated 30 x 20 seconds using a Branson 250 sonicator at pulse 40, intensity 3%, followed by Covaris sonication. The chromatin should be sheared into fragments with average length of 200 bp. Samples were centrifuged at maximum speed and the supernatant was used for the subsequent steps. To reverse cross-linking, samples were incubated at 65C overnight in TE buffer, followed by a treatment with RNaseA (0.2 mg/ml) for 30 min at 37C, and with Proteinase K (0.05 mg/ml) for 2 hours at 50C. Finally, DNA was purified using Minelute columns (Qiagen).

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

text: Cell culture 2


E-MTAB-1084:Cell culture 1

characteristic: ENA-LAST-UPDATE

text: MPI for Molecular Genetics, Berlin, Germany

text: public

characteristic: SRA accession

text: E-MTAB-1084:Cell culture 1

text: ArrayExpress

text: embryonic cell

text: fruit fly

text: Protocols: S2 cells were grown in Schneiders Media (Invitrogen) supplemented with 10% of heat-inactivated bovine fetal serum to a density of 1 million cells per ml. Cells at a density of 1 million per ml were transfected with 10 ug dsRNA against NSL1, NSL3 or GFP using Lipofectamine RNAiMAX (Invitrogen) according to manufacturers instructions. The cells were harvested after 6 days. 30 ml cell suspension were spun down and the cell pellet was resuspended in 1 ml of cross-linking solution (50 mM HEPES, 100 mM NaCl, 1 mM EDTA, 0.5 mM EGTA). 37% formaldehyde was added to a final concentration of 1.8%. The tube was rotated at room temperature for 15 minutes and the reaction was quenched with 2.5 M glycine at a final concentration of 125 mM for 5 minutes. The fixed cells were washed 3 times for 5 minutes each with rinse buffer 1 (10 mM HEPES pH 7.5, 10 mM EDTA, 0.5 mM EGTA, 0.25% Triton X-100) and 5 times for 5 minutes each with rinse buffer 2 (10 mM HEPES pH 7.6, 1 mM EDTA, 0.5 mM EGTA, 200 mM NaCl). Finally, the cells were washed 3 times in RIPA buffer (25 mM HEPES pH 7.5, 140 mM NaCl, 1 mM EDTA, 1% Triton-X 100, 0.1% SDS, 0.1% DOC). The cells were sonicated 30 x 20 seconds using a Branson 250 sonicator at pulse 40, intensity 3%, followed by Covaris sonication. The chromatin should be sheared into fragments with average length of 200 bp. Samples were centrifuged at maximum speed and the supernatant was used for the subsequent steps. 3 ul antibody were added to the chromatin and rotated overnight at 4C. Protein A/G-Sepharose was blocked with 0.1% BSA and 1 mg/ml of short dsDNA (15 bp) for 1 hour. 20 ul of the sepharose was added to the chromatin/antibody mixture and incubated for 3 hours in 4C. The sepharose beads were then washed four times for 15 minutes in RIPA buffer, once in LiCl buffer (0.25 M LiCl, 10 mM Tris at pH 8, 1 mM EDTA, 0.5% NP-40, 0.5% DOC), and two times in TE buffer. The beads were incubated at 65C overnight in TE buffer to reverse the cross-link. The sample was then treated with RNaseA (0.2 mg/ml) for 30 min at 37C, and with Proteinase K (0.05 mg/ml) for 2 hours at 50C. Finally, DNA was purified using Minelute columns (Qiagen).

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

text: Cell culture 1


E-MTAB-1084:Cell culture 3

text: public

text: E-MTAB-1084:Cell culture 3

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: embryonic cell

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

text: Cell culture 3


E-MTAB-1084:Cell culture 4

text: public

text: E-MTAB-1084:Cell culture 4

text: ArrayExpress

text: embryonic cell

text: fruit fly

characteristic: description

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

text: Cell culture 4


E-MTAB-1084:Cell culture 5

text: public

text: E-MTAB-1084:Cell culture 5

text: ArrayExpress

text: embryonic cell

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: male

characteristic: sex

text: Cell culture 5


text: TGAC

text: public

text: rape

text: Line 'Flash'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S4 line 'Ramses'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Fixed line 'N02D-1952'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Madrigal' x 'Recital'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Fixed line from 'Rocket(pst)' x 'Lizard'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Castille'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Verona'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Karoo-057'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'New Hakuran'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Coriander'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Sensation NZ'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Dippes'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Fixed line 'Temple'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Westar 10'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Primor'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: APEX-93_5 X GINYOU_3 DH LINE

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Wilhelmsburger; Reform'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Bravour'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Breeders line 'Samourai'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Rapid Cycling Rape'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Palmedor'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Eurol'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S4 line 'Palu'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: field mustard

text: B. rapa r-o-18

text: Brassica rapa

text: Brassica rapa


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Hansen' x 'Gaspard'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line Monty-028

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Amber' x 'Commanche'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'English Giant'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Fixed line 'N01D-1330'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Catana'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Capitol' x 'Mohican'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Siberische Boerenkool'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Synthetic line Q100

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Matador'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Dwarf Essex'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Cabernet'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Shannon' x 'Winner'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Stellar'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Abukuma Natane'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Hanna'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Erglu'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Moana, Moana Rape'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Breeders line 'Capitol'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Breeders' line 'Apex'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Columbus' x 'Nickel'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S4 line 'POH 285, Bolko'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Bolko'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Tina'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Rafal'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'York'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Zhongshuang II'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S4 line 'Slovenska Krajova'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Excalibur'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Huguenot'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Major'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Canard'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Huron' x 'Navajo'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Dimension'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Rocket'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Canberra' x 'Courage'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Ragged Jack'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Double haploid line 'Jet Neuf'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S4 line 'Taisetsu'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S4 line 'Quinta'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Xiangyou 15'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line from 'Licrown' x 'Express'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Norin'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Vision'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Duplo'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Vige'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Doubled haploid line 'Lembkes Malchower'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Topas'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Darmor'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: S3 line 'Baltia'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Line 'Expert'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: rape

text: Fixed line from 'Inca' x 'Contact'

text: Brassica napus

text: Brassica napus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: PFIZER

text: public

text: human

text: GTL16 cells

text: Homo sapiens

text: Homo sapiens

text: GTL16 Parental Cells

characteristic: title


text: SRA-Webin

characteristic: External Id

text: PFIZER

characteristic: INSDC center name

text: public

text: human

text: GTL16 R1 clone with SND1-BRAF fusion

text: Homo sapiens

text: Homo sapiens


text: SRA-Webin

text: PFIZER

characteristic: INSDC first public

text: public

text: human

text: GTL16 R3 clone with SND1-BRAF fusion

text: Homo sapiens

text: Homo sapiens


text: EMBL

text: public

characteristic: StrainOrLine

text: ArrayExpress

characteristic: broker name

text: Midbrain dopaminergic progenitor (mDA)

characteristic: cell type

text: house mouse

text: Protocols: NestinLmx1a-transfected E14.1 ES cells were propagated on gelatinized culture dishes in DMEM (Invitrogen) supplemented with 2000 U/ml LIF (Chemicon), 10% KSR, 2% FCS, 0.1 mM nonessential amino acids, 1 mM pyruvate (Invitrogen), and 0.1 _M _2-mercaptoethanol (Sigma). For in vitro differentiation, 1.2 _ 106 ES cells were nucleofected with expression vectors using the mouse ES nucleoporator kit (AMAXA), replated on gelatinized 24-well plates (15,000 cells/well), and incubated in ES medium for 12D15 hr. ES cells then were differentiated to mDA cells in N2B27 medium supplemented with 20 ng/ml bFGF (Invitrogen), 100 ng/ml FGF8, and 1.7 nM Shh (R&D systems) for 5 days. These in vitro generated mDA progenitors robustly expressed Foxa2 at d5 and differentiated further into Nurr1+/TH+ mature mDA neurons by d8. Cells were cross-linked in 1% formaldehyde for 10 min, and cross-linking was quenched by adding glycine to a final concentration of 0.125 M for 5 min under constant rotation. After washing in PBS to remove excess formaldehyde and glycine, 2 _ 107 fixed cells were homogenized in 300 _L of cold whole-cell lysis buffer (10 mM TrisDHCl at pH 8.0, 10 mM NaCl, 3 mM MgCl2, 1% NP-40, 1% SDS) and protease inhibitors. Lysates were incubated on ice for 10 min and sonicated with a Diagenode Bioruptor (30-s on/off pulses for 10 min, on high setting). Debris was removed by centrifugation at 13,000 x g for 10 min, and the supernatant was collected and snap frozen in liquid nitrogen. As input, 10 _L of sonicated chromatin was incubated in PBS with 200 mM NaCl overnight at 65 C, treated with proteinase K and purified using the QIAquick PCR Purification Kit (Qiagen). Chromatin concentration was determined with a NanoDrop 3.1.0 (Agilent Technologies, Santa Clara, CA, USA). 10 ug of chromatin per sample was immunoprecipitated with 2 _g of rabbit anti-Foxa2 (Besnard et al. Gene Expr. Patterns 5: 193D208) or normal rabbit anti-IgG antibody (Millipore #12-370). Immunoprecipitated DNA was analyzed by real-time quantitative PCR (qPCR) prior to library construction. Extraction was carried out according to manufacturer's specifications.

text: normal

characteristic: disease state

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: CRAG

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: muskmelon

characteristic: common name

text: The melon doubled haploid line DHL92 was derived from the cross between the Korean accession PI 161375 (Songwhan Charmi, spp. agrestis) (SC) and the ‘Piel de Sapo’ T111 line (ssp. inodorus) (PS)

text: Cucumis melo

text: Cucumis melo

text: Leaves of the doubled haploid line DHL92 of Cucumis melo L.


characteristic: ENA-LAST-UPDATE

text: SRA-Webin

text: BCCS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: An Nhe1 restriction site was inserted into the cDNA of the large Runx1 isoform to remove the first ATG and allow insertion of the tag. The Bio-V5 double tag was ligated into the Nhe1 site to create N-terminally tagged Runx1 cDNA. The tagged Runx1 cDNA was cloned into the Not1 site of a Gata1 promoter based expression vector. N-terminally tagged Runx1 cDNA was stably expressed in MEL cells containing the bacterial biotin ligase BirA. Nuclear extracts were from MEL cells were prepared as described (6). Immunoprecipitations (IP) were performed as described (Rodriguez, P et al., Isolation of transcription factor complexes by in vivo biotinylation tagging and direct binding to streptavidin beads. Methods in molecular biology 338: 305-323, Soler, E., A systems approach to analyze transcription factors in mammalian cells. Methods 53(2): 151- 162.). Bio-V5-Runx1 Immunoprecipitations (IP) from nuclear extracts were preformed using V5 affinity agarose beads from Sigma. Antibodies used in this study are listed in the supplementary data S1. Washes were preformed using HENG150 (150 mM KCl, 20 mM HEPES, 20% glycerol, 0.25 mM EDTA, 0.05% NP-40). IP�s were preformed in the presence of benzonase endonuclease to exclude the identification of complexes formed via DNA binding. Chromatin Immunoprecipitations (ChIP) were performed as described (Kolodziej, K., Optimal use of tandem biotin and V5 tags in ChIP assays. BMC molecular biology 10: 6., Soler, E., The genome592 wide dynamics of the binding of Ldb1 complexes during erythroid differentiation. Genes & development 24(3): 277-289.). Per ChIP 2x107 and per ChIP-seq 10x107 MEL cells were used.

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Runx1 chipseq in induduced MEL cells


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: BCCS

text: public

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Runx1 chipseq in non-induduced MEL cells


name: E-MTAB-941b:Rad21+/- input 2

characteristic: External Id

text: CRUK-CRI

text: public

text: E-MTAB-941b:Rad21+/- input 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Protocols: Hepatocytes were prepared by direct perfusion of the liver with buffered salt solution followed by percent formaldehyde. After 10 minutes the tissue was removed and diced in 500 mM glycine buffer to neutralize the formaldehyde. After homogenization the hepatocytes were rinsed with PBS.

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: Rad21+/- input 2

characteristic: title


name: E-MTAB-941b:FOXA2 ChIP 2

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: StrainOrLine

text: E-MTAB-941b:FOXA2 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Protocols: Hepatocytes were prepared by direct perfusion of the liver with buffered salt solution followed by percent formaldehyde. After 10 minutes the tissue was removed and diced in 500 mM glycine buffer to neutralize the formaldehyde. After homogenization the hepatocytes were rinsed with PBS. The animal livers were crosslinked with formaldehyde treatment and chromatin fragmented to an average of 300 bp by sonication. Chromatin from an mass equivalent of 1/4 mouse liver was used for each ChIP experiment. Solexa libraries were prepared following the instructions of Illumina (Sample preparation for genomic DNA - version 2.2) with the following modifications. The ChIP-enriched DNA and input DNA were not further fragmented. After end-repair and addition of an A base to the 3 prime ends, the adapters were ligated to the ends of the DNA Fragments using 2 ml of fourtyfold diluted Adapter oligo mix in a total reaction volume of 25 ml. Between these steps, the DNA was purified using the DNA Clean-and-Concentrator-5 kit (Zymo Research). Subsequently, the DNA was amplified by 18 cycles of PCR, purified with QIAquick PCR purification Kit, and eluted with 33.5 ml of 10 mM tris buffer at pH7.0. The PCR-product was sized fractionated on 2 percent agarose gel and a gel slice containing the 200-300 bp fragments was excised.

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: FOXA2 ChIP 2


name: E-MTAB-941b:Rad21+/- HNF6 ChIP 2

text: CRUK-CRI

text: public

text: E-MTAB-941b:Rad21+/- HNF6 ChIP 2

text: ArrayExpress

characteristic: broker name

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- HNF6 ChIP 2


name: E-MTAB-941b:H2AK5ac ChIP 1

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

characteristic: INSDC last update

text: public

text: E-MTAB-941b:H2AK5ac ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: H2AK5ac ChIP 1


name: E-MTAB-941b:CEBPA ChIP 1

text: CRUK-CRI

text: public

characteristic: INSDC status

text: E-MTAB-941b:CEBPA ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: CEBPA ChIP 1


name: E-MTAB-941b:Rad21+/- CEBPA ChIP 2

characteristic: ENA-LAST-UPDATE

text: CRUK-CRI

text: public

characteristic: SRA accession

text: E-MTAB-941b:Rad21+/- CEBPA ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- CEBPA ChIP 2


name: E-MTAB-941b:E2F4 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:E2F4 ChIP 1

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: E2F4 ChIP 1


name: E-MTAB-941b:RAD21 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:RAD21 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: RAD21 ChIP 1


name: E-MTAB-941b:RNAP2 ChIP 2

characteristic: External Id

text: CRUK-CRI

text: public

text: E-MTAB-941b:RNAP2 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: RNAP2 ChIP 2


name: E-MTAB-941b:CEBPA ChIP 2

text: CRUK-CRI

text: public

text: E-MTAB-941b:CEBPA ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: CEBPA ChIP 2


name: E-MTAB-941b:H3K4me1 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:H3K4me1 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: H3K4me1 ChIP 1

characteristic: title


name: E-MTAB-941b:Rad21+/- RAD21 ChIP 2

text: CRUK-CRI

characteristic: INSDC center name

text: public

text: E-MTAB-941b:Rad21+/- RAD21 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- RAD21 ChIP 2


name: E-MTAB-941b:Rad21+/- HNF4A ChIP 2

text: CRUK-CRI

characteristic: INSDC first public

text: public

text: E-MTAB-941b:Rad21+/- HNF4A ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- HNF4A ChIP 2


name: E-MTAB-941b:CTCF ChIP 1

text: CRUK-CRI

text: public

characteristic: StrainOrLine

text: E-MTAB-941b:CTCF ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: CTCF ChIP 1


name: E-MTAB-941b:PREP1 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:PREP1 ChIP 1

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: PREP1 ChIP 1


name: E-MTAB-941b:p300 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:p300 ChIP 1

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: p300 ChIP 1


name: E-MTAB-941b:input 2

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: public

text: E-MTAB-941b:input 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: input 2


name: E-MTAB-941b:RNAP2 ChIP 1

text: CRUK-CRI

characteristic: INSDC last update

text: public

text: E-MTAB-941b:RNAP2 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: RNAP2 ChIP 1


name: E-MTAB-941b:HNF6 ChIP 2

text: CRUK-CRI

text: public

characteristic: INSDC status

text: E-MTAB-941b:HNF6 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: HNF6 ChIP 2


name: E-MTAB-941b:H3K79me2 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:H3K79me2 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: H3K79me2 ChIP 1


name: E-MTAB-941b:GABPA ChIP 1

characteristic: ENA-LAST-UPDATE

text: CRUK-CRI

text: public

text: E-MTAB-941b:GABPA ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: GABPA ChIP 1


name: E-MTAB-941b:FOXA1 ChIP 2

text: CRUK-CRI

text: public

characteristic: SRA accession

text: E-MTAB-941b:FOXA1 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: FOXA1 ChIP 2


name: E-MTAB-941b:FOXA2 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:FOXA2 ChIP 1

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: FOXA2 ChIP 1


name: E-MTAB-941b:Rad21+/- HNF6 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:Rad21+/- HNF6 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- HNF6 ChIP 1


name: E-MTAB-941b:NRSF/REST ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:NRSF/REST ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: NRSF/REST ChIP 1


name: E-MTAB-941b:input 3

characteristic: External Id

text: CRUK-CRI

text: public

text: E-MTAB-941b:input 3

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: input 3


name: E-MTAB-941b:Rad21+/- CEBPA ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:Rad21+/- CEBPA ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: Rad21+/- CEBPA ChIP 1


name: E-MTAB-941b:STAG2 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:STAG2 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: STAG2 ChIP 1

characteristic: title


name: E-MTAB-941b:Rad21+/- HNF4A ChIP 1

text: CRUK-CRI

characteristic: INSDC center name

text: public

text: E-MTAB-941b:Rad21+/- HNF4A ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- HNF4A ChIP 1


name: E-MTAB-941b:STAG1 ChIP 2

text: CRUK-CRI

characteristic: INSDC first public

text: public

text: E-MTAB-941b:STAG1 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: STAG1 ChIP 2


name: E-MTAB-941b:CBP ChIP 1

text: CRUK-CRI

text: public

characteristic: StrainOrLine

text: E-MTAB-941b:CBP ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: CBP ChIP 1


name: E-MTAB-941b:Rad21+/- RAD21 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:Rad21+/- RAD21 ChIP 1

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- RAD21 ChIP 1


name: E-MTAB-941b:STAG1 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:STAG1 ChIP 1

text: ArrayExpress

text: hepatocyte

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: STAG1 ChIP 1


name: E-MTAB-941b:HNF1A ChIP 1

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: public

text: E-MTAB-941b:HNF1A ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: HNF1A ChIP 1


name: E-MTAB-941b:p300 ChIP 2

text: CRUK-CRI

characteristic: INSDC last update

text: public

text: E-MTAB-941b:p300 ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: p300 ChIP 2


name: E-MTAB-941b:HNF6 ChIP 1

text: CRUK-CRI

text: public

characteristic: INSDC status

text: E-MTAB-941b:HNF6 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: HNF6 ChIP 1


name: E-MTAB-941b:H3K4me3 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:H3K4me3 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: H3K4me3 ChIP 1


name: E-MTAB-941b:CTCF ChIP 2

characteristic: ENA-LAST-UPDATE

text: CRUK-CRI

text: public

text: E-MTAB-941b:CTCF ChIP 2

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: CTCF ChIP 2


name: E-MTAB-941b:FOXA1 ChIP 1

text: CRUK-CRI

text: public

characteristic: SRA accession

text: E-MTAB-941b:FOXA1 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: FOXA1 ChIP 1


name: E-MTAB-941b:input 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:input 1

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: input 1


name: E-MTAB-941b:HNF4A ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:HNF4A ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: HNF4A ChIP 1


name: E-MTAB-941b:H3K36me3 ChIP 1

text: CRUK-CRI

text: public

text: E-MTAB-941b:H3K36me3 ChIP 1

text: ArrayExpress

text: hepatocyte

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: H3K36me3 ChIP 1


name: E-MTAB-941b:Rad21+/- input 1

characteristic: External Id

text: CRUK-CRI

text: public

text: E-MTAB-941b:Rad21+/- input 1

text: ArrayExpress

text: hepatocyte

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: Rad21+/- input 1


text: SC

text: public

text: m_WTrescue_H3K4me1_M-sc-2010-11-17-1009298

text: house mouse

text: Mus musculus

text: Mus musculus


text: young adult

characteristic: ArrayExpress-DevelopmentalStage

text: wildtype

characteristic: ArrayExpress-Genotype

text: brain

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: BalbC

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: m_brain_wt_8w_RNA_Seq_D194-sc-2012-04-26T15:46:07Z-1404611

text: house mouse

text: Mus musculus

text: RNA-Seq brain

characteristic: sample description

text: Mus musculus

text: BalbC

characteristic: strain


text: young adult

text: MeCP2 -/y

text: brain

text: male

text: Mus musculus

text: BalbC

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: m_brain_minusy_6w_RNA_Seq_D247-sc-2012-04-26T15:46:12Z-1404614

text: house mouse

text: Mus musculus

text: RNA-Seq brain

text: Mus musculus

text: BalbC


text: young adult

text: wildtype

text: brain

text: male

text: Mus musculus

text: BalbC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: m_brain_wt_6w_RNA_Seq_D246-sc-2012-04-26T15:46:11Z-1404613

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA-Seq brain

text: Mus musculus

text: BalbC


text: young adult

text: MeCP2 -/y

text: brain

text: male

text: Mus musculus

text: BalbC

characteristic: External Id

text: SC

text: public

text: m_brain_minusy_8w_RNA_Seq_D196-sc-2012-04-26T15:46:10Z-1404612

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA-Seq brain

text: Mus musculus

text: BalbC


Florida

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: VETMEDUNI

text: public

text: Florida

text: fruit fly

text: Whole-genome sequenced DNA Pools of isofemale lines originating from natural populations of Florida (Fruit and Spice Park, Homestead, FL; 25°32'N, 80°29'W; N = 39 isofemale lines; collected 07/2010)

characteristic: description

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Florida (genomic

characteristic: title