text: Hatching:Long-pec - ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: ZMP_phenotype_188_1_phenotypic_12-sc-2249804

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for dmd, allele ta222a, from ZMP phenotype 188 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGAACTGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph188

text: Danio rerio

text: mixed


status: PUBLIC

text: Hatching:Long-pec - ZFS:0000033

tag: attribute

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ZMP_phenotype_188_1_non_phenotypic_9-sc-2249813

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo for dmd, allele ta222a, from ZMP phenotype 188 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TATGCCAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph188

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for tfap2a, allele sa24445 from ZMP phenotype 162 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph162

text: Danio rerio

text: mixed


text: Segmentation:1-4 somites - ZFS:0000023

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for tfap2a, allele sa24445 from ZMP phenotype 162 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCACTGTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph162

text: Danio rerio

text: mixed


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for tfap2a, allele sa24445 from ZMP phenotype 162 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCTTGGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph162

text: Danio rerio

text: mixed


text: Hatching:Long-pec - ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_188_1_non_phenotypic_4-sc-2249808

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for dmd, allele ta222a, from ZMP phenotype 188 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAAGTTCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph188

text: Danio rerio

text: mixed


text: Hatching:Long-pec - ZFS:0000033

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ZMP_phenotype_188_1_non_phenotypic_7-sc-2249811

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for dmd, allele ta222a, from ZMP phenotype 188 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCATTGAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph188

text: Danio rerio

text: mixed


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for tfap2a, allele sa24445 from ZMP phenotype 162 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph162

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 177 clutch 1 obtained by crossing two fish homozygous for tert, allele sa6541. The homozygous adults were obtained by crossing parents heterozygous for tert, sa6541 and growing the quarter homozygous fish from the clutch.A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph177

text: Danio rerio

text: mixed


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for tfap2a, allele sa24445 from ZMP phenotype 162 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGATGG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph162

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 177 clutch 1 obtained by crossing two fish homozygous for tert, allele sa6541. The homozygous adults were obtained by crossing parents heterozygous for tert, sa6541 and growing the quarter homozygous fish from the clutch.A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph177

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula:Prim-5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 177 clutch 1 obtained by crossing two fish homozygous for tert, allele sa6541. The homozygous adults were obtained by crossing parents heterozygous for tert, sa6541 and growing the quarter homozygous fish from the clutch.A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph177

text: Danio rerio

text: mixed


text: Pharyngula:Prim-5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 191 clutch 1 obtained by crossing two fish wild type for tert, allele sa6541. The wild type adults were obtained by crossing parents heterozygous for tert, sa6541 and growing the quarter wild type fish from the clutch.A 8 base indexing sequence (TCAGATTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph191

text: Danio rerio

text: mixed


status: KILLED

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: killed

characteristic: Sample Description

characteristic: Strain

text: human

text: Homo sapiens

text: Homo sapiens


text: ES Cells

characteristic: ArrayExpress-CellType

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: gRNA PCR

text: Mus musculus


text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University College Dublin

characteristic: block

text: ArrayExpress

characteristic: broker name

text: cattle

text: Protocols: 2 study groups. natural and experimentally infected miRneasy based extraction TruSeq Small RNA Sample Preparation Kit (Illumina)

characteristic: description

text: Johne's disease

characteristic: disease

characteristic: individual

text: experimentally infected (control) by Mycobacterium Avium subspecies paratuberculosis

characteristic: infection

text: Bos taurus

text: Bos taurus

text: blood serum

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

text: frozen (-20 degree C) for approximately 10-15 years

characteristic: specimen with known storage state

text: 49 month

characteristic: time

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College Dublin

text: public

characteristic: Submitter Id

text: ArrayExpress

text: cattle

characteristic: common name

text: Johne's disease

text: naturally infected by Mycobacterium avium subspecies paratuberculosis

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

text: 0 month


text: University College Dublin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: block

text: ArrayExpress

characteristic: broker name

text: cattle

text: Johne's disease

text: Bos taurus

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

text: 46 month


text: University College Dublin

text: public

text: ArrayExpress

text: cattle

characteristic: description

text: Johne's disease

characteristic: disease

characteristic: individual

characteristic: infection

text: Bos taurus

text: Bos taurus

text: blood serum

characteristic: organism part

text: Bos taurus

text: female

characteristic: sex

characteristic: specimen with known storage state

text: 0 month


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College Dublin

text: public

characteristic: Submitter Id

text: ArrayExpress

text: cattle

text: Johne's disease

text: Bos taurus

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

text: 46 month

characteristic: time

characteristic: title


text: University College Dublin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: cattle

characteristic: common name

text: Johne's disease

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

text: 43 month


text: University College Dublin

text: public

characteristic: block

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: description

text: Johne's disease

characteristic: disease

characteristic: individual

characteristic: infection

text: Bos taurus

text: Bos taurus

text: blood serum

characteristic: organism part

text: Bos taurus

text: female

text: 43 month


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College Dublin

text: public

characteristic: Submitter Id

text: ArrayExpress

text: cattle

text: Johne's disease

text: Bos taurus

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

characteristic: sex

characteristic: specimen with known storage state

text: 6 month


text: University College Dublin

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: cattle

text: Johne's disease

text: Bos taurus

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

text: 6 month

characteristic: time

characteristic: title


text: University College Dublin

text: public

characteristic: block

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: common name

characteristic: description

text: Johne's disease

characteristic: disease

characteristic: individual

text: Bos taurus

characteristic: organism

text: Bos taurus

text: blood serum

text: Bos taurus

text: female

text: 49 month


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: DNA libraries made by the addition of tailed oligos in a second round of PCR.

characteristic: sample description

text: Danio rerio


text: Bone marrow cells

characteristic: ArrayExpress-CellType

text: Femur

characteristic: ArrayExpress-OrganismPart

text: Cell Line

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


text: Human

text: PhiX DNA spike-in at 50%

characteristic: ArrayExpress-Treatment

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: DNA library from AML cell lines after CRISPR/CAS9 screens

text: Homo sapiens


E-MTAB-3447:Sample 9

text: public

text: E-MTAB-3447:Sample 9

tag: Namespace:The Garvan Institute of Medical Research

text: ArrayExpress

characteristic: broker name

text: induced pluripotent stem cell-derived neurons

characteristic: cell type

text: human

text: Protocols: NEAT1 knockdown was performed using antisenes oligonucleotides. Samples were either treated with NEAT1 ASO, scrambled ASO, or no treatment RNA preparation for library preparation: Prior to library preparation, each total RNA sample was DNase-treated using TURBO DNase (Ambion, USA) according to the manufacturer’s instructions followed by extraction, ethanol precipitation and resuspension in nuclease-free H2O. 0.1 x volume 3M NaOAc was added to DNAse-treated RNA before addition of 2 x volume phenol:chloroform:isoamyl alcohol (25:24:1)(PCA)(Sigma-Aldrich, MO, USA). After a 1 min vortex, samples were incubated at 20-25 °C for 2 min. The aqueous phase was transferred to a new 1.5 mL tube before 2 consecutive extractions with 2 x volume chloroform. After the chloroform extractions, 0.1 volume 3M NaOAc and 2.5 x volume 100% EtOH were added to the samples followed by vortexing and centrifugation for 10 min, 20,000 x g at 20-25 °C. DNase-treated RNA quality was assessed on an Agilent Technologies 2100 Bioanalyzer with an RNA 6000 Nano kit (Agilent Technologies, USA) according to the manufacturer’s instructions. RNA concentration was measured using a Nanodrop 2000 spectrophotometer (Thermo Fisher Scientific, USA) Total RNA library preparation: 500ng of total RNA was used as input material for library preparation using the TruSeq Stranded Total RNA Sample Prep Kit (LT) (Illumina, USA) according to manufacturer’s instructions. Individual libraries were indexed as recommended by Illumina. Quantification and quality control of DNA library templates: Indexed cDNA libraries were analysed individually using an Agilent Technologies 2100 Bioanalyzer with the DNA 1000 kit according to the manufacturer’s instructions (Agilent Technologies, USA). Libraries were diluted and pooled to a final concentration of 10nM each in nuclease-free H2O (Ambion, USA). Pooled libraries were quantitated using a Life Technologies Qubit 2.0 Fluorometer with the Qubit dsDNA HS Assay Kit (Life Technologies, USA) and further diluted to 2nM. Final DNA library concentration was confirmed using a Qubit dsDNA HS Assay Kit. PCR-competent library DNA concentration was verified using the universal KAPA Library Quantification Kit for Illumina Sequencing Platforms according to manufacturer’s instructions (KAPA Biosystems, USA). An Applied Biosystems 7900HT Fast Real-Time PCR machine (Life Technologies, USA) was used for quantitative real-time PCR.

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: NEAT1 antisense oligonucleotide

characteristic: rna interference

text: Homo sapiens

text: KCl

characteristic: stimulus

text: Sample 9

characteristic: title


E-MTAB-3447:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Garvan Institute of Medical Research

text: public

text: E-MTAB-3447:Sample 17

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: KCl

text: Sample 17


E-MTAB-3447:Sample 15

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3447:Sample 15

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: NEAT1 antisense oligonucleotide

text: Homo sapiens

text: KCl

text: Sample 15


E-MTAB-3447:Sample 12

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3447:Sample 12

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 12


E-MTAB-3447:Sample 1

text: public

text: E-MTAB-3447:Sample 1

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: scrambled antisense oligonucleotide

text: Homo sapiens

text: KCl

text: Sample 1


E-MTAB-3447:Sample 13

text: public

text: E-MTAB-3447:Sample 13

text: ArrayExpress

characteristic: cell type

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: scrambled antisense oligonucleotide

text: Homo sapiens

text: KCl

text: Sample 13


E-MTAB-3447:Sample 14

text: public

text: E-MTAB-3447:Sample 14

text: ArrayExpress

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: scrambled antisense oligonucleotide

characteristic: rna interference

text: Homo sapiens

text: Sample 14


E-MTAB-3447:Sample 6

text: public

text: E-MTAB-3447:Sample 6

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-3447:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3447:Sample 4

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: NEAT1 antisense oligonucleotide

text: Homo sapiens

text: Sample 4


E-MTAB-3447:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3447:Sample 2

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: scrambled antisense oligonucleotide

text: Homo sapiens

text: Sample 2


E-MTAB-3447:Sample 10

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3447:Sample 10

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: NEAT1 antisense oligonucleotide

text: Homo sapiens

text: Sample 10


E-MTAB-3447:Sample 3

characteristic: External Id

text: public

text: E-MTAB-3447:Sample 3

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: NEAT1 antisense oligonucleotide

text: Homo sapiens

text: KCl

characteristic: stimulus

text: Sample 3


E-MTAB-3447:Sample 7

characteristic: INSDC center name

text: public

text: E-MTAB-3447:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: scrambled antisense oligonucleotide

text: Homo sapiens

text: KCl

text: Sample 7


E-MTAB-3447:Sample 16

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3447:Sample 16

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: NEAT1 antisense oligonucleotide

text: Homo sapiens

text: Sample 16


E-MTAB-3447:Sample 5

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3447:Sample 5

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: KCl

text: Sample 5


E-MTAB-3447:Sample 8

text: public

text: E-MTAB-3447:Sample 8

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: scrambled antisense oligonucleotide

text: Homo sapiens

text: Sample 8


E-MTAB-3447:Sample 11

text: public

text: E-MTAB-3447:Sample 11

text: ArrayExpress

characteristic: cell type

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: KCl

text: Sample 11


text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

characteristic: sample description

text: Danio rerio


text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Normal

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-3445:Sample 8

text: University College Dublin

characteristic: INSDC center name

text: public

text: E-MTAB-3445:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: cattle

text: Protocols: 2 study groups. control and experimentally infected with MAP miRneasy based extraction TruSeq Small RNA Sample Preparation Kit (Illumina)

characteristic: individual

text: Mycobacterium avium paratuberculosis

characteristic: infect

text: Bos taurus

text: Bos taurus

text: serum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: 0 month

characteristic: time

text: Sample 8

characteristic: title


E-MTAB-3445:Sample 20

text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3445:Sample 20

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: common name

characteristic: description

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 20


E-MTAB-3445:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 22

text: ArrayExpress

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 22


E-MTAB-3445:Sample 5

characteristic: External Id

text: University College Dublin

characteristic: INSDC center name

text: public

text: E-MTAB-3445:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: cattle

characteristic: individual

text: Mycobacterium avium paratuberculosis

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 5


E-MTAB-3445:Sample 18

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 18

text: ArrayExpress

text: cattle

text: Mycobacterium avium paratuberculosis

characteristic: infect

text: Bos taurus

text: Bos taurus

text: serum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: 6 month

characteristic: time

text: Sample 18


E-MTAB-3445:Sample 4

text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3445:Sample 4

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 4

characteristic: title


E-MTAB-3445:Sample 13

text: University College Dublin

text: public

characteristic: SRA accession

text: E-MTAB-3445:Sample 13

text: ArrayExpress

characteristic: broker name

text: cattle

characteristic: common name

characteristic: description

text: Mycobacterium avium paratuberculosis

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 13


E-MTAB-3445:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 3

text: ArrayExpress

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 3


E-MTAB-3445:Sample 14

characteristic: External Id

text: University College Dublin

characteristic: INSDC center name

text: public

text: E-MTAB-3445:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: cattle

characteristic: individual

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 14


E-MTAB-3445:Sample 11

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 11

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: serum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: 0 month

characteristic: time

text: Sample 11


E-MTAB-3445:Sample 1

text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3445:Sample 1

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 1


E-MTAB-3445:Sample 6

text: University College Dublin

text: public

characteristic: SRA accession

text: E-MTAB-3445:Sample 6

text: ArrayExpress

characteristic: broker name

text: cattle

text: Mycobacterium avium paratuberculosis

characteristic: infect

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 6

characteristic: title


E-MTAB-3445:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 2

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: Mycobacterium avium paratuberculosis

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 2


E-MTAB-3445:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College Dublin

characteristic: INSDC center name

text: public

text: E-MTAB-3445:Sample 16

text: ArrayExpress

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 16


E-MTAB-3445:Sample 9

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: cattle

characteristic: individual

text: Bos taurus

text: Bos taurus

text: serum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: 0 month

text: Sample 9


E-MTAB-3445:Sample 21

text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3445:Sample 21

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

characteristic: time

text: Sample 21


E-MTAB-3445:Sample 17

text: University College Dublin

text: public

characteristic: SRA accession

text: E-MTAB-3445:Sample 17

text: ArrayExpress

characteristic: broker name

text: cattle

text: Mycobacterium avium paratuberculosis

characteristic: infect

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 17

characteristic: title


E-MTAB-3445:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 10

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 10


E-MTAB-3445:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College Dublin

characteristic: INSDC center name

text: public

text: E-MTAB-3445:Sample 12

text: ArrayExpress

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 12


E-MTAB-3445:Sample 19

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: cattle

characteristic: individual

text: Mycobacterium avium paratuberculosis

text: Bos taurus

text: Bos taurus

text: serum

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: 0 month

text: Sample 19


E-MTAB-3445:Sample 7

text: University College Dublin

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3445:Sample 7

text: ArrayExpress

text: cattle

text: Mycobacterium avium paratuberculosis

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

characteristic: time

text: Sample 7


E-MTAB-3445:Sample 15

text: University College Dublin

text: public

characteristic: SRA accession

text: E-MTAB-3445:Sample 15

text: ArrayExpress

characteristic: broker name

text: cattle

text: Mycobacterium avium paratuberculosis

characteristic: infect

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 0 month

text: Sample 15

characteristic: title


E-MTAB-3445:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University College Dublin

text: public

text: E-MTAB-3445:Sample 23

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: Mycobacterium avium paratuberculosis

text: Bos taurus

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 23


E-MTAB-3445:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University College Dublin

characteristic: INSDC center name

text: public

text: E-MTAB-3445:Sample 24

text: ArrayExpress

text: cattle

text: Mycobacterium avium paratuberculosis

text: Bos taurus

characteristic: organism

text: Bos taurus

text: serum

text: Bos taurus

text: male

text: 6 month

text: Sample 24


text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: sample description

text: Danio rerio


text: Oregon Health and Science University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Oregon Health and Science University

text: ArrayExpress

text: human

text: Protocols: Human biopsy samples from cholecystectomy patients. Pathologist selected and excised grossly normal tissue fragments which we dissociated into cell suspensions and cultured in vitro. Cultures were initiated and maintained using intestinal culture system (PMID: 21113151 , 21889923).

text: Homo sapiens

text: Homo sapiens

text: gall bladder

characteristic: organism part

text: Homo sapiens


text: Oregon Health and Science University

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens

text: biliary tree

text: Homo sapiens


characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: MUS MUSCULUS

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of California, Irvine

text: public

tag: Namespace:University of California, Irvine

text: ArrayExpress

text: crimson-patched longwing

characteristic: common name

text: Protocols: Samples obtained from a Costa Rican butterfly farm, Suministros Entomologicos Costarricenses, S.A Three tissues were sampled: legs (all six legs), antennae (both antennae) and mouthparts (proboscis and labial palps) Libraries were prepared using the mRNA-Seq sample preparation kit (Illumina, Inc.) using standard protocols

characteristic: description

characteristic: individual

text: Heliconius erato

text: Heliconius erato

text: Antennae

text: Heliconius erato

text: Female

characteristic: sex

characteristic: title


text: University of California, Irvine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: crimson-patched longwing

text: Heliconius erato

characteristic: organism

text: Heliconius erato

text: Antennae

text: Heliconius erato

text: Male


text: University of California, Irvine

text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: crimson-patched longwing

text: Heliconius erato

text: Heliconius erato

text: Mouthparts

characteristic: organism part

text: Heliconius erato

text: Male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of California, Irvine

text: public

text: ArrayExpress

text: crimson-patched longwing

text: Heliconius erato

text: Heliconius erato

text: Mouthparts

text: Heliconius erato

text: Female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of California, Irvine

text: public

text: ArrayExpress

text: crimson-patched longwing

text: Heliconius erato

text: Heliconius erato

text: Legs

text: Heliconius erato

text: Female


text: University of California, Irvine

text: public

text: ArrayExpress

text: crimson-patched longwing

characteristic: common name

characteristic: description

text: Heliconius erato

text: Heliconius erato

text: Legs

text: Heliconius erato

text: Male


E-MTAB-3452:Sample 5

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 5

tag: Namespace:Centre for Human Genetics KU Leuven

text: ArrayExpress

text: rabbit

text: Protocols: total 8 does were weighed and premedicated with ketamine 50 mg/kg kg (Ketamine 1000 CEVA; CEVA Sante Animale, Brussels, Belgium), xylazine 6 mg/kg (Vexylan; CEVA Sante Animale), and Buprenorphine 0.03 mg/kg (Vetergesic; Reckitt Benckiser Healthcare, Brussels, Belgium), all injected intramuscularly. General anesthesia was maintained using a face mask with isoflurane 1.5% (Isoba Vet; Abbott Laboratories Ltd., Queenborough, Kent, UK) in oxygen at 1 L/min. Maternal heart rate and oxygen saturation were monitored with a pulse oxymeter (Nellcor N-20P; Nellcor Inc., Haasrode, Belgium). Body temperature was maintained by a heating pad. The doe was placed in the supine position, the abdominal wall was shaved and disinfected with povidone iodine (Isobetadine; Asta Medica, Brussels, Belgium) and draped in a sterile fashion. Throughout all surgical procedures aseptic conditions were maintained. In every doe we operated on two fetuses each in the middle of the left or right uterine horn. First diaphragmatic hernia (DH) was created at 23 days' GA. A second operation was performed on these DH fetuses at 28 days' GA. At that time, one fetus underwent tracheal occlusion (TO group), whereas another underwent a sham operation (DH group), i.e. hysterotomy, fetal neck exposure, tracheal dissection without ligation, and skin closure. The latter is performed to exclude the effects of a fetal surgical procedure per se. At 30 days' GA, the does were euthanized and all operated fetuses and 1 control nonoperated littermate (WT) were harvested by cesarean section to obtain nonventilated lungs. total 8 does were weighed and premedicated with ketamine 50 mg/kg kg (Ketamine 1000 CEVA; CEVA Sante Animale, Brussels, Belgium), xylazine 6 mg/kg (Vexylan; CEVA Sante Animale), and Buprenorphine 0.03 mg/kg (Vetergesic; Reckitt Benckiser Healthcare, Brussels, Belgium), all injected intramuscularly. General anesthesia was maintained using a face mask with isoflurane 1.5% (Isoba Vet; Abbott Laboratories Ltd., Queenborough, Kent, UK) in oxygen at 1 L/min. Maternal heart rate and oxygen saturation were monitored with a pulse oxymeter (Nellcor N-20P; Nellcor Inc., Haasrode, Belgium). Body temperature was maintained by a heating pad. The doe was placed in the supine position, the abdominal wall was shaved and disinfected with povidone iodine (Isobetadine; Asta Medica, Brussels, Belgium) and draped in a sterile fashion. Throughout all surgical procedures aseptic conditions were maintained. In every doe we operated on two fetuses each in the middle of the left or right uterine horn. First diaphragmatic hernia (DH) was created at 23 days' GA. A second operation was performed on these DH fetuses at 28 days' GA. At that time, one fetus underwent tracheal occlusion (TO group), whereas another underwent a sham operation (DH group), i.e. hysterotomy, fetal neck exposure, tracheal dissection without ligation, and skin closure. The latter is performed to exclude the effects of a fetal surgical procedure per se. At 30 days' GA, the does were euthanized and all operated fetuses and 1 control nonoperated littermate (WT) were harvested by cesarean section to obtain nonventilated lungs. RNA isolation was performed on the whole left lung samples within 4hrs of harvesting using the RNeasy mini kit (Qiagen Benelux B.V., Venlo NL ). Tissue lysis and homogenization was performed in 1200ul Buffer RLT using the TissueLyser system (Qiagen Benelux B.V., Venlo NL). One ug of total RNA was used as input material for sequencing library preparation which was performed with the TruSeq RNA Library Preparation Kit (Illumina) according to the manufacturers protocol. Fragmentation was performed for 6 mins. 8 PCR cycles were used for PCR enrichment step. Samples were indexed to allow for multiplexing.

text: fetal

characteristic: developmental stage

text: surgically created congenital diaphragmatic hernia

characteristic: disease

text: 30 day

characteristic: gestational age

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 5

text: tracheal occlusion

characteristic: treatment


E-MTAB-3452:Sample 3

text: Centre for Human Genetics KU Leuven

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3452:Sample 3

text: ArrayExpress

text: rabbit

text: fetal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 3

characteristic: title

text: sham surgery


E-MTAB-3452:Sample 6

text: Centre for Human Genetics KU Leuven

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3452:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: rabbit

text: fetal

text: 30 day

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 6

text: tracheal occlusion


E-MTAB-3452:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 14

text: ArrayExpress

characteristic: broker name

text: rabbit

text: fetal

text: normal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

characteristic: organism part

text: Oryctolagus cuniculus

text: Sample 14


E-MTAB-3452:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 4

text: ArrayExpress

text: rabbit

characteristic: common name

characteristic: description

text: fetal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 4

text: sham surgery


E-MTAB-3452:Sample 1

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 1

text: ArrayExpress

text: rabbit

text: fetal

characteristic: developmental stage

characteristic: disease

text: 30 day

characteristic: gestational age

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 1

text: sham surgery

characteristic: treatment


E-MTAB-3452:Sample 12

text: Centre for Human Genetics KU Leuven

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3452:Sample 12

text: ArrayExpress

text: rabbit

text: fetal

text: normal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 12

characteristic: title


E-MTAB-3452:Sample 8

text: Centre for Human Genetics KU Leuven

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3452:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: rabbit

text: fetal

text: 30 day

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 8

text: tracheal occlusion


E-MTAB-3452:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 2

text: ArrayExpress

characteristic: broker name

text: rabbit

text: fetal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

characteristic: organism part

text: Oryctolagus cuniculus

text: Sample 2

text: sham surgery


E-MTAB-3452:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 13

text: ArrayExpress

text: rabbit

characteristic: common name

characteristic: description

text: fetal

text: normal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 13


E-MTAB-3452:Sample 9

text: Centre for Human Genetics KU Leuven

text: public

text: E-MTAB-3452:Sample 9

text: ArrayExpress

text: rabbit

text: fetal

characteristic: developmental stage

characteristic: disease

text: 30 day

characteristic: gestational age

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 9

text: tracheal occlusion

characteristic: treatment


E-MTAB-3452:Sample 10

text: Centre for Human Genetics KU Leuven

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3452:Sample 10

text: ArrayExpress

text: rabbit

text: fetal

text: 30 day

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 10

characteristic: title

text: tracheal occlusion


E-MTAB-3452:Sample 7

text: Centre for Human Genetics KU Leuven

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3452:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: rabbit

text: fetal

text: 30 day

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: left lung

text: Oryctolagus cuniculus

text: Sample 7

text: tracheal occlusion


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Oregon Health and Science University

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Oregon Health and Science University

text: public

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Human biopsy samples from cholecystectomy patients. Pathologist selected and excised grossly normal tissue fragments which we dissociated into cell suspensions and cultured in vitro. Cultures were initiated and maintained using a intestinal monolayer culture (PMID: 21793026).

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: nd

characteristic: 14C Date BP

text: Corded Ware

characteristic: Culture or Age

text: F

characteristic: DNA sex

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: F

characteristic: cal BC high

text: nd

characteristic: cal BC low

text: human

text: Estonia

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: grave

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Sope

characteristic: site

text: tooth


text: Corded Ware

text: M

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Infant

text: nd

text: human

text: Poland

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Oblaczkowo

text: tooth

characteristic: title


characteristic: 14C Date BP

text: Nordic BA

characteristic: Culture or Age

text: M

characteristic: DNA sex

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

characteristic: bio material

text: nd

characteristic: cal BC high

text: human

characteristic: common name

text: Denmark

text: Homo sapiens

text: barrow 4 central grave, N skeleton #1

text: Homo sapiens

text: Karlstrup

text: tooth


text: Nordic LN

text: M

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: M

characteristic: cal BC low

text: human

text: Denmark

characteristic: country

characteristic: description

text: Homo sapiens

text: PMD 98, III

characteristic: sample info

text: Homo sapiens

characteristic: sex

text: Marbjerg

characteristic: site

text: tooth


characteristic: 14C Date BP

text: Nordic BA

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: M

text: human

text: Denmark

text: Homo sapiens

characteristic: organism

text: N 358 grave 3 skeleton 8

text: Homo sapiens

text: Sebber skole

text: tooth

characteristic: title


text: Nordic MN B

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

characteristic: bio material

text: F

characteristic: cal BC high

text: human

characteristic: common name

text: Denmark

text: Homo sapiens

text: PMD 17, V, N chamber lower layer

text: Homo sapiens

text: Kyndel�se

text: tooth


characteristic: 14C Date BP

text: Nordic LN

characteristic: Culture or Age

text: F

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: M

characteristic: cal BC low

text: human

text: Denmark

characteristic: country

characteristic: description

text: Homo sapiens

text: PMD 57, I

characteristic: sample info

text: Homo sapiens

characteristic: sex

text: Falsh�j

characteristic: site

text: tooth


text: Battle Axe

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: M

text: human

text: Sweden

text: Homo sapiens

characteristic: organism

text: grave 26:I

text: Homo sapiens

text: Viby

text: tooth

characteristic: title


characteristic: 14C Date BP

text: Nordic LN

characteristic: Culture or Age

text: F

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: 14C Date BP

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text: DTU

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text: barrow I grave 14:1

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characteristic: ENA-LAST-UPDATE

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text: DTU

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text: ID 3437

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text: Sz�zhalombatta-F�ldv�r

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characteristic: Submitter Id

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text: Sz�zhalombatta-F�ldv�r

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text: M

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text: human

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text: Trundholm mose II

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text: Grave # 33

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text: DTU

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text: Hungary

text: Homo sapiens

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text: DTU

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text: tooth


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text: Russia

text: Homo sapiens

text: Homo sapiens

text: Bystrovka

text: tooth


characteristic: 14C Date BP

text: Andronovo

characteristic: Culture or Age

text: F

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: M

characteristic: cal BC low

text: human

text: Russia

characteristic: country

characteristic: description

text: Homo sapiens

characteristic: sample info

text: Homo sapiens

characteristic: sex

text: Kytmanovo

characteristic: site

text: tooth


text: 721 AD

text: Iron Age

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: F

text: 889 AD

text: human

text: Russia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Kytmanovo

text: tooth

characteristic: title


characteristic: 14C Date BP

text: Afanasievo

characteristic: Culture or Age

text: F

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: nd

characteristic: age class

characteristic: bio material

text: nd

characteristic: cal BC high

text: human

characteristic: common name

text: Russia

text: Homo sapiens

text: Homo sapiens

text: River Kuyum

text: tooth


text: Afanasievo

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: F

characteristic: cal BC low

text: human

text: Russia

characteristic: country

characteristic: description

text: Homo sapiens

characteristic: sample info

text: Homo sapiens

characteristic: sex

text: Bateni

characteristic: site

text: tooth


text: nd

characteristic: 14C Date BP

text: Afanasievo

characteristic: Culture or Age

text: F

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: nd

text: F

text: nd

text: human

text: Russia

text: nd

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: nd

text: Bateni

text: tooth

characteristic: title


text: Andronovo

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

characteristic: bio material

text: M

characteristic: cal BC high

text: human

characteristic: common name

text: Russia

text: Homo sapiens

text: Homo sapiens

text: Kytmanovo

text: tooth


text: nd

characteristic: 14C Date BP

text: Okuneva

characteristic: Culture or Age

text: F

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: nd

text: F

text: nd

characteristic: cal BC low

text: human

text: Russia

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Verkhni Askiz Village

characteristic: site

text: bone


text: Meshovskaya

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: nd

text: nd

text: human

text: Russia

text: Homo sapiens

characteristic: organism

text: Square E-7, N:14 (-26.5 cm), 2011

text: Homo sapiens

text: Kapova cave

text: tooth

characteristic: title


text: nd

characteristic: 14C Date BP

text: Meshovskaya

characteristic: Culture or Age

text: M

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: nd

characteristic: age class

text: nd

characteristic: bio material

text: nd

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Russia

text: nd

text: Homo sapiens

text: Square E-7, N:25, southern sector

text: Homo sapiens

text: nd

text: Kapova cave

text: tooth


text: nd

text: Meshovskaya

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC center name

text: public

text: nd

text: nd

text: nd

text: nd

characteristic: cal BC low

text: human

text: Russia

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: Square R-8, depth -4/-10

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Kapova cave

characteristic: site

text: skull


text: nd

characteristic: 14C Date BP

text: Yamnaya

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Juvenile

text: nd

text: M

text: nd

text: human

text: Russia

text: nd

text: Homo sapiens

characteristic: organism

text: Kurgan 1, grave 13

text: Homo sapiens

text: nd

text: Temrta IV

text: tooth

characteristic: title


text: Yamnaya

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

characteristic: bio material

text: M

characteristic: cal BC high

text: human

characteristic: common name

text: Russia

text: Homo sapiens

text: Kurgan 1, grave 9

text: Homo sapiens

text: Temrta IV

text: tooth


text: nd

characteristic: 14C Date BP

text: Yamnaya

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: nd

text: M

text: nd

characteristic: cal BC low

text: human

text: Russia

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: Kurgan 1, grave 6

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Temrta IV

characteristic: site

text: tooth


text: Yamnaya

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: M

text: human

text: Russia

text: Homo sapiens

characteristic: organism

text: Kurgan 1, grave 3

text: Homo sapiens

text: Peshany V

text: tooth

characteristic: title


characteristic: 14C Date BP

text: Yamnaya

characteristic: Culture or Age

text: M

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

characteristic: bio material

text: M

characteristic: cal BC high

text: human

characteristic: common name

text: Russia

text: Homo sapiens

text: Kurgan 4, grave 8

text: Homo sapiens

text: Ulan IV

text: tooth


text: LBA

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC center name

text: public

text: nd

text: nd

characteristic: cal BC low

text: human

text: Russia

characteristic: country

characteristic: description

text: Homo sapiens

characteristic: sample info

text: Homo sapiens

characteristic: sex

text: Afontova Gora

characteristic: site

text: bone


characteristic: 14C Date BP

text: EBA

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: nd

text: nd

text: human

text: Russia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Stalingrad Quarry

text: tooth

characteristic: title


text: nd

text: Bell Beaker

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: F

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Germany

text: nd

text: Homo sapiens

text: F0174, gr 4

text: Homo sapiens

text: nd

text: Augsburg

text: tooth


text: nd

characteristic: 14C Date BP

text: Bell Beaker

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: nd

text: M

text: nd

characteristic: cal BC low

text: human

text: Germany

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: F0187, gr 3

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Augsburg

characteristic: site

text: tooth


text: nd

text: Bell Beaker

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: nd

text: F

text: nd

text: human

text: Germany

text: nd

text: Homo sapiens

characteristic: organism

text: F0228, obj. 136/92 = gr.9

text: Homo sapiens

text: nd

text: Landau an der Isar

text: tooth

characteristic: title


text: nd

characteristic: 14C Date BP

text: Bell Beaker

characteristic: Culture or Age

text: M

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: M

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Germany

text: nd

text: Homo sapiens

text: F0234, obj. 8

text: Homo sapiens

text: nd

text: Osterhofen-Altenmarkt

text: tooth


text: nd

text: Bell Beaker

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: nd

text: M

text: nd

characteristic: cal BC low

text: human

text: Germany

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: F0241, obj. 25

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Osterhofen-Altenmarkt

characteristic: site

text: tooth


text: nd

characteristic: 14C Date BP

text: Bell Beaker

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Infant

text: nd

text: M

text: nd

text: human

text: Czech Republic

text: nd

text: Homo sapiens

characteristic: organism

text: F0521, A01168, gr. 14

text: Homo sapiens

text: nd

text: Knezeves

text: tooth

characteristic: title


text: nd

text: Bell Beaker

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: M

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Czech Republic

text: nd

text: Homo sapiens

text: F0523, A0766, gr. 8

text: Homo sapiens

text: nd

text: Knezeves

text: tooth


text: nd

characteristic: 14C Date BP

text: Bell Beaker

characteristic: Culture or Age

text: F

text: DTU

characteristic: INSDC center name

text: public

text: Infant

text: nd

text: nd

text: nd

characteristic: cal BC low

text: human

text: Czech Republic

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: F0525, A01623, gr. 16

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Brandysek

characteristic: site

text: tooth


text: nd

text: Bell Beaker

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Infant

text: nd

text: nd

text: nd

text: human

text: Czech Republic

text: nd

text: Homo sapiens

characteristic: organism

text: F0527, A01643, gr. 35?

text: Homo sapiens

text: nd

text: Brandysek

text: tooth

characteristic: title


text: nd

characteristic: 14C Date BP

text: Unetice

characteristic: Culture or Age

text: F

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: M

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Czech Republic

text: nd

text: Homo sapiens

text: F0565, gr. 238

text: Homo sapiens

text: nd

text: Velke Prilepy

text: tooth


text: nd

text: Unetice

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: nd

text: F

text: nd

characteristic: cal BC low

text: human

text: Czech Republic

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: F0597, gr. 6

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Moravska Nova Ves

characteristic: site

text: tooth


text: nd

characteristic: 14C Date BP

text: LBA

characteristic: Culture or Age

text: F

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: nd

text: M

text: nd

text: human

text: Montenegro

text: nd

text: Homo sapiens

characteristic: organism

text: Grave 3

text: Homo sapiens

text: nd

text: Velika Gruda

text: tooth

characteristic: title


text: nd

text: Iron Age

text: F

characteristic: DNA sex

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: F

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Montenegro

text: nd

text: Homo sapiens

text: Grave 36

text: Homo sapiens

text: nd

text: Velika Gruda

text: tooth


characteristic: 14C Date BP

text: LBA

characteristic: Culture or Age

text: M

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: M

characteristic: cal BC low

text: human

text: Lithuania

characteristic: country

characteristic: description

text: Homo sapiens

text: 1755, bog find

characteristic: sample info

text: Homo sapiens

characteristic: sex

text: Turlojiske

characteristic: site

text: bone


text: nd

text: Iron Age

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: nd

text: M

text: nd

text: human

text: Russia

text: nd

text: Homo sapiens

characteristic: organism

text: 13-1, grave 20

text: Homo sapiens

text: nd

text: Verh-Uimon

text: tooth

characteristic: title


text: nd

characteristic: 14C Date BP

text: Iron Age

characteristic: Culture or Age

text: M

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU

text: public

text: Adult

characteristic: age class

text: nd

characteristic: bio material

text: M

characteristic: cal BC high

text: nd

text: human

characteristic: common name

text: Russia

text: nd

text: Homo sapiens

text: 18-1, grave 35

text: Homo sapiens

text: nd

text: Verh-Uimon

text: tooth


text: nd

text: Iron Age

text: M

characteristic: DNA sex

characteristic: ENA-CHECKLIST

text: DTU

characteristic: INSDC center name

text: public

text: Adult

text: nd

text: nd

text: nd

characteristic: cal BC low

text: human

text: Russia

characteristic: country

text: nd

characteristic: description

text: Homo sapiens

text: 23-1, grave 2

characteristic: sample info

text: Homo sapiens

text: nd

characteristic: sex

text: Sary-Bel

characteristic: site

text: tooth


text: Segmentation:1-4 somites - ZFS:0000023

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

characteristic: sample description

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TCCAGTCG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TGGCTCAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio


text: Segmentation:1-4 somites - ZFS:0000023

text: Whole embryo

text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from an embryo heterozygous for both sox10, allele t3 and sox10, allele baz1 plus ERCC spike mix 1 (Ambion). The embryos are from clutch 1. A 8 base indexing sequence (TGCGTGAA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph150.

text: Danio rerio