E-MTAB-941:input 2

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:input 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: input 2


E-MTAB-941:p300 ChIP 1

status: KILLED

text: hepatocyte

tag: attribute

characteristic: CellType

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

characteristic: SRA accession

characteristic: StrainOrLine

text: E-MTAB-941:p300 ChIP 1

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Hepatocytes were prepared by direct perfusion of the liver with buffered salt solution followed by percent formaldehyde. After 10 minutes the tissue was removed and diced in 500 mM glycine buffer to neutralize the formaldehyde. After homogenization the hepatocytes were rinsed with PBS. The animal livers were crosslinked with formaldehyde treatment and chromatin fragmented to an average of 300 bp by sonication. Chromatin from an mass equivalent of 1/4 mouse liver was used for each ChIP experiment. Solexa libraries were prepared following the instructions of Illumina (Sample preparation for genomic DNA version 2.2) with the following modifications. The ChIP-enriched DNA and input DNA were not further fragmented. After end-repair and addition of an A base to the 3 prime ends, the adapters were ligated to the ends of the DNA Fragments using 2 ml of fourtyfold diluted Adapter oligo mix in a total reaction volume of 25 ml. Between these steps, the DNA was purified using the DNA Clean-and-Concentrator-5 kit (Zymo Research). Subsequently, the DNA was amplified by 18 cycles of PCR, purified with QIAquick PCR purification Kit, and eluted with 33.5 ml of 10 mM tris buffer at pH7.0. The PCR-product was sized fractionated on 2 percent agarose gel and a gel slice containing the 200-300 bp fragments was excised.

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: p300 ChIP 1

characteristic: title


E-MTAB-941:H3K4me3 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:H3K4me3 ChIP 1

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: H3K4me3 ChIP 1


E-MTAB-941:CEBPA ChIP 1

text: hepatocyte

characteristic: CellType

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:CEBPA ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: CEBPA ChIP 1


E-MTAB-941:CBP ChIP 1

text: hepatocyte

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:CBP ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: CBP ChIP 1


E-MTAB-941:H2AK5ac ChIP 1

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:H2AK5ac ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: H2AK5ac ChIP 1


E-MTAB-941:CEBPA ChIP 5

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: Mus musculus

text: liver

text: E-MTAB-941:CEBPA ChIP 5

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: CEBPA ChIP 5


E-MTAB-941:E2F4 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

text: E-MTAB-941:E2F4 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: E2F4 ChIP 1


E-MTAB-941:HNF6 ChIP 4

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

characteristic: SRA accession

characteristic: StrainOrLine

text: E-MTAB-941:HNF6 ChIP 4

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF6 ChIP 4


E-MTAB-941:H3K36me3 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:H3K36me3 ChIP 1

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: H3K36me3 ChIP 1


E-MTAB-941:HNF6 ChIP 2

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:HNF6 ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: HNF6 ChIP 2

characteristic: title


E-MTAB-941:FOXA2 ChIP 4

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:FOXA2 ChIP 4

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: FOXA2 ChIP 4


E-MTAB-941:HNF6 ChIP 1

text: hepatocyte

characteristic: CellType

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:HNF6 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF6 ChIP 1


E-MTAB-941:p300 ChIP 2

text: hepatocyte

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:p300 ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: p300 ChIP 2


E-MTAB-941:input 1

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:input 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: input 1


E-MTAB-941:FOXA1 ChIP 1

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: Mus musculus

text: liver

text: E-MTAB-941:FOXA1 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: FOXA1 ChIP 1


E-MTAB-941:HNF4A ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

text: E-MTAB-941:HNF4A ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF4A ChIP 1


E-MTAB-941:HNF6 ChIP 5

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

characteristic: SRA accession

characteristic: StrainOrLine

text: E-MTAB-941:HNF6 ChIP 5

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF6 ChIP 5


E-MTAB-941:STAG1 ChIP 2

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:STAG1 ChIP 2

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: STAG1 ChIP 2


E-MTAB-941:STAG1 ChIP 3

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:STAG1 ChIP 3

text: ArrayExpress

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: STAG1 ChIP 3

characteristic: title


E-MTAB-941:GABPA ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:GABPA ChIP 1

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: GABPA ChIP 1


E-MTAB-941:RNAP2 ChIP 2

text: hepatocyte

characteristic: CellType

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:RNAP2 ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: RNAP2 ChIP 2


E-MTAB-941:HNF4A ChIP 2

text: hepatocyte

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:HNF4A ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF4A ChIP 2


E-MTAB-941:GABPA ChIP 2

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:GABPA ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: GABPA ChIP 2


E-MTAB-941:H3K4me1 ChIP 1

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: Mus musculus

text: liver

text: E-MTAB-941:H3K4me1 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: H3K4me1 ChIP 1


E-MTAB-941:HNF6 ChIP 3

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

text: E-MTAB-941:HNF6 ChIP 3

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF6 ChIP 3


E-MTAB-941:CEBPA ChIP 6

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

characteristic: SRA accession

characteristic: StrainOrLine

text: E-MTAB-941:CEBPA ChIP 6

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: CEBPA ChIP 6


E-MTAB-941:CEBPA ChIP 4

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:CEBPA ChIP 4

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: CEBPA ChIP 4


E-MTAB-941:FOXA2 ChIP 2

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:FOXA2 ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: FOXA2 ChIP 2

characteristic: title


E-MTAB-941:H3K79me2 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:H3K79me2 ChIP 1

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: H3K79me2 ChIP 1


E-MTAB-941:CTCF ChIP 2

text: hepatocyte

characteristic: CellType

characteristic: ENA-FIRST-PUBLIC

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:CTCF ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: CTCF ChIP 2


E-MTAB-941:STAG1 ChIP 1

text: hepatocyte

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:STAG1 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: STAG1 ChIP 1


E-MTAB-941:HNF6 ChIP 6

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC center name

characteristic: INSDC first public

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:HNF6 ChIP 6

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF6 ChIP 6


E-MTAB-941:HNF1A ChIP 2

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: Mus musculus

text: liver

text: E-MTAB-941:HNF1A ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF1A ChIP 2


E-MTAB-941:HNF1A ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

text: E-MTAB-941:HNF1A ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: HNF1A ChIP 1


E-MTAB-941:input 3

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

characteristic: SRA accession

characteristic: StrainOrLine

text: E-MTAB-941:input 3

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: input 3


E-MTAB-941:NRSF/REST ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:NRSF/REST ChIP 1

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: NRSF/REST ChIP 1


E-MTAB-941:PREP1 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:PREP1 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: PREP1 ChIP 1

characteristic: title


status: PUBLIC

characteristic: ENA-CHECKLIST

text: Saolta

text: public

text: IRL

characteristic: Submitter Id

characteristic: collection date

text: Klebsiella

characteristic: genus

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human

characteristic: isolation source

text: gastrointestinal system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

type: AMR curated data - CABBAGE

value: cefoxitin

value: EUCAST

value: broth dilution

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: tobramycin

value: resistant

value: gentamicin

value: amoxicillin-clavulanic acid

value: amikacin

value: cefotaxime

value: intermediate

value: cefpodoxime

value: ampicillin

value: cefpodoxime-clavulanic acid

value: meropenem

value: piperacillin-tazobactam

value: tigecycline


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: title


text: UCSDMI

text: public

text: no

text: HoneybeeGut

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: Gut

characteristic: env matter

text: host-associated

characteristic: env package

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: High

characteristic: infection

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: Gut

characteristic: sample type

characteristic: sampling

text: honeybee metagenome

characteristic: time

text: yes

characteristic: treatment

text: Gut

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeBrood

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host associated

text: Animal

text: Animal corpus

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PupaeWashcell

characteristic: env matter

text: host-associated

characteristic: env package

text: Hexapoda

text: HoneybeeBrood

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:multicellular organism

characteristic: host body habitat

text: UBERON:organism substance

text: UBERON:multicellular organism

text: honey bee

text: Apis mellifera

text: Low

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

text: PupaeWashcell

text: honeybee metagenome

characteristic: title

text: yes

text: Brood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: no

text: HoneybeeGut

text: TRUE

text: Not EMP

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: insecta-associated habitat

text: Gut

text: host-associated

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Agricultural

text: Croatia:Osijek-Baranja County

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Low

characteristic: infection

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: Gut

characteristic: sample type

characteristic: sampling

text: honeybee metagenome

characteristic: time

text: yes

characteristic: treatment

text: Gut

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: Environmental system determined by a material

text: HoneybeePollenBread

text: organic material

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: Low

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

text: PollenBread

text: pollen metagenome

characteristic: title

text: yes

text: PB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: yes

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Agricultural

text: Croatia:Osijek-Baranja County

characteristic: host subject id

text: Low

characteristic: infection

characteristic: latitude

characteristic: longitude

text: pollen metagenome

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

characteristic: time

text: yes

characteristic: treatment

text: PB

characteristic: typesample


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeBrood

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host associated

text: Animal

text: Animal corpus

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PupaeWashcell

characteristic: env matter

text: host-associated

characteristic: env package

text: Hexapoda

text: HoneybeeBrood

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:multicellular organism

characteristic: host body habitat

text: UBERON:organism substance

characteristic: host body product

text: UBERON:multicellular organism

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host taxid

text: High

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

text: PupaeWashcell

text: honeybee metagenome

characteristic: title

text: yes

text: Brood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Agricultural

text: Croatia:Osijek-Baranja County

characteristic: host subject id

text: High

characteristic: infection

characteristic: latitude

characteristic: longitude

text: pollen metagenome

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

characteristic: time

text: yes

characteristic: treatment

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: yes

text: HoneybeePollenBread

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: High

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

text: PollenBread

text: pollen metagenome

characteristic: title

text: yes

text: PB


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeBrood

characteristic: description

text: TRUE

text: Not EMP

text: Host associated

text: Animal

text: Animal corpus

text: dense settlement biome

text: insecta-associated habitat

text: PupaeWashcell

text: host-associated

text: Hexapoda

text: HoneybeeBrood

text: Agricultural

text: Croatia:Osijek-Baranja County

text: UBERON:multicellular organism

characteristic: host body habitat

text: UBERON:organism substance

characteristic: host body product

text: UBERON:multicellular organism

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: High

characteristic: infection

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PupaeWashcell

characteristic: sample type

characteristic: sampling

text: honeybee metagenome

characteristic: time

text: yes

characteristic: treatment

text: Brood

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeGut

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: Gut

characteristic: env matter

text: host-associated

characteristic: env package

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: honey bee

text: Apis mellifera

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

text: Gut

text: honeybee metagenome

characteristic: title

text: Gut


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: no

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Croatia:Osijek-Baranja County

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: pollen metagenome

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: PB

characteristic: typesample


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: yes

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

text: pollen metagenome

text: PB


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: no

text: HoneybeeGut

text: TRUE

text: Not EMP

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: insecta-associated habitat

text: Gut

text: host-associated

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Pristine

characteristic: environment

text: Croatia:Osijek-Baranja County

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: Gut

text: honeybee metagenome

characteristic: time

characteristic: title

text: no

characteristic: treatment

text: Gut


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Pristine

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: no

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: yes

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Pristine

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

text: pollen metagenome

characteristic: time

characteristic: title

text: no

characteristic: treatment

text: PB


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeGut

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: Gut

characteristic: env matter

text: host-associated

characteristic: env package

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Pristine

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host taxid

text: honeybee metagenome

text: FALSE

text: FALSE

text: Gut

characteristic: sample type

characteristic: sampling

text: honeybee metagenome

text: no

text: Gut


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Pristine

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

text: pollen metagenome

characteristic: time

characteristic: title

text: no

characteristic: treatment

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: no

text: HoneybeeBrood

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host associated

text: Animal

text: Animal corpus

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PupaeWashcell

characteristic: env matter

text: host-associated

characteristic: env package

text: Hexapoda

text: HoneybeeBrood

text: Pristine

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:multicellular organism

characteristic: host body habitat

text: UBERON:organism substance

characteristic: host body product

text: UBERON:multicellular organism

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host taxid

text: honeybee metagenome

text: FALSE

text: FALSE

text: PupaeWashcell

characteristic: sample type

characteristic: sampling

text: honeybee metagenome

text: no

text: Brood


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeBrood

text: TRUE

text: Not EMP

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: insecta-associated habitat

text: PupaeWashcell

text: host-associated

text: Hexapoda

text: HoneybeeBrood

text: Pristine

characteristic: environment

text: Croatia:Osijek-Baranja County

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: honey bee

text: Apis mellifera

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PupaeWashcell

text: honeybee metagenome

characteristic: time

characteristic: title

text: no

characteristic: treatment

text: Brood

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: yes

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Pristine

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: no

text: PB


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeGut

text: TRUE

text: Not EMP

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: insecta-associated habitat

text: Gut

text: host-associated

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: High

characteristic: infection

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: Gut

text: honeybee metagenome

characteristic: time

characteristic: title

text: yes

characteristic: treatment

text: Gut


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeeGut

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: Gut

characteristic: env matter

text: host-associated

characteristic: env package

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: UBERON:gastrointestinal system

text: UBERON:lumen of gut

text: UBERON:digestive tract

text: honey bee

text: Apis mellifera

text: Low

text: honeybee metagenome

text: FALSE

text: FALSE

text: Gut

characteristic: sample type

characteristic: sampling

text: honeybee metagenome

text: yes

text: Gut

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: no

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Agricultural

text: Croatia:Osijek-Baranja County

characteristic: host subject id

text: Low

characteristic: infection

characteristic: latitude

characteristic: longitude

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

text: pollen metagenome

characteristic: time

characteristic: title

text: yes

characteristic: treatment

text: PB


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: yes

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: Low

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: yes

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: no

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Agricultural

text: Croatia:Osijek-Baranja County

characteristic: host subject id

text: High

characteristic: infection

characteristic: latitude

characteristic: longitude

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

text: pollen metagenome

characteristic: time

characteristic: title

text: yes

characteristic: treatment

text: PB


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: yes

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: High

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: yes

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: no

text: HoneybeeGut

text: TRUE

text: Not EMP

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: insecta-associated habitat

text: Gut

text: host-associated

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Agricultural

text: Croatia:Osijek-Baranja County

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: honey bee

characteristic: host common name

text: Apis mellifera

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Low

characteristic: infection

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: Gut

text: honeybee metagenome

characteristic: time

characteristic: title

text: no

characteristic: treatment

text: Gut


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: no

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: Low

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: no

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: yes

text: HoneybeePollenBread

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: PollenBread

text: host-associated

text: HoneybeePollenBread

text: organic material

text: Agricultural

text: Croatia:Osijek-Baranja County

characteristic: host subject id

text: Low

characteristic: infection

characteristic: latitude

characteristic: longitude

text: pollen metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: PollenBread

text: pollen metagenome

characteristic: time

characteristic: title

text: no

characteristic: treatment

text: PB


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: yes

text: HoneybeePollenBread

characteristic: description

text: TRUE

text: Not EMP

characteristic: emp status

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

characteristic: env biome

text: insecta-associated habitat

characteristic: env feature

text: PollenBread

characteristic: env matter

text: host-associated

characteristic: env package

text: HoneybeePollenBread

text: organic material

text: Agricultural

characteristic: environment

text: Croatia:Osijek-Baranja County

characteristic: geo loc name

characteristic: hive

text: Low

text: pollen metagenome

text: FALSE

text: FALSE

text: PollenBread

characteristic: sample type

characteristic: sampling

text: pollen metagenome

text: no

text: PB

characteristic: typesample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: no

text: HoneybeeGut

text: TRUE

text: Not EMP

text: Host-associated

text: Plant

text: Plant secretion

text: dense settlement biome

text: insecta-associated habitat

text: Gut

text: host-associated

text: digestive system

text: HoneybeeGut

text: intestine environment

text: Agricultural

text: Croatia:Osijek-Baranja County

characteristic: host subject id

text: High

characteristic: infection

characteristic: latitude

characteristic: longitude

text: honeybee metagenome

characteristic: organism

text: FALSE

text: FALSE

characteristic: public

characteristic: run number

text: Gut

text: honeybee metagenome

characteristic: time

characteristic: title

text: yes

characteristic: treatment

text: Gut


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF NORTH CAROLINA AT CHAPEL HILL

characteristic: Submitter Id

text: 16s sequencing of fecal microbiome from LFD/HFD fed animal

characteristic: description

text: gut metagenome

text: gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF NORTH CAROLINA AT CHAPEL HILL

characteristic: INSDC center name

text: public

text: gut metagenome

text: gut metagenome


text: THE OHIO STATE UNIVERSITY

characteristic: INSDC first public

text: public

tag: Namespace:THE OHIO STATE UNIVERSITY

text: uncultured bacterium

text: uncultured bacterium

text: 16s gene


text: public

characteristic: collection date

text: The Great Barrier Reef and Red Sea Sequencing Project

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: lat lon

text: Pachyseris speciosa

characteristic: organism

text: Pachyseris speciosa

text: Sperm DNA of Pachyseris_Speciosa - Coral Genome


text: UNSW

text: public

text: Aquimarina sp. AU58

text: Aquimarina sp. AU58

text: Genome of Aquimarina sp. AU58

characteristic: title


Aquimarina sp. AU119

text: UNSW

text: public

text: Aquimarina sp. AU119

text: Aquimarina sp. AU119

text: Aquimarina sp. AU119

text: Genome of Aquimarina sp. AU119


Aquimarina sp. AU474

text: UNSW

text: public

text: Aquimarina sp. AU474

text: Aquimarina sp. AU474

text: Aquimarina sp. AU474

text: Genome of Aquimarina sp. AU474


text: public

tag: Namespace:Chengdu research base of giant panda breeding

text: giant panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: China

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Study for giant panda gut microbiota and cellulose digestion mechanism

characteristic: project name

text: metagenome

text: Illumina Hiseq

characteristic: sequencing method


Ruegeria sp. AU67

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNSW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ruegeria sp. AU67

characteristic: Submitter Id

text: Ruegeria sp. AU67

text: Ruegeria sp. AU67

text: Ruegeria sp. AU67 genome


text: Chengdu research base of giant panda breeding

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: giant panda

characteristic: environment (biome)

text: gut

text: fecal

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina Hiseq

characteristic: title


text: public

characteristic: description

text: gut metagenome

text: gut metagenome


text: public

text: gaint panda

text: gut

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina HSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF COLOGNE

characteristic: Submitter Id

text: not provided

text: Germany, BB, Berlin

characteristic: country

text: Acinetobacter pittii

text: Acinetobacter pittii


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collection date

text: Germany, NW, NRW

text: Acinetobacter pittii

characteristic: organism

text: Acinetobacter pittii

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, NW, Bochum

text: Acinetobacter pittii

text: Acinetobacter pittii


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, NI, Braunschweig

text: Acinetobacter pittii

text: Acinetobacter pittii


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, SN, SN

text: Acinetobacter pittii

text: Acinetobacter pittii


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, SN, Dresden

text: Acinetobacter pittii

text: Acinetobacter pittii


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, TH, TH

text: Acinetobacter pittii

text: Acinetobacter pittii


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, BY, Munich

text: Acinetobacter pittii

text: Acinetobacter pittii


text: public

tag: Namespace:Epigenetics Programme, Babraham Institute, Cambridge, UK

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: undifferentiated spermatogonia

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Isolated postnatal day 14 testes from mice heterozygous for the Miwi2- tdTomato transcriptional allele were dealbulginated and digested with collagenase (0,5 mg/ml, Sigma) at 32oC for 10 minutes shaking in 1ml of DMEM media (Life technologies) supplemented with Pen/Strep (Life technologies), NEAA (Life technologies), sodium pyruvate (Life technologies) and sodium lactate (Sigma). After digestion seminiferous tubules were collected by centrifugation at 1000 rpm for 5 min. Single cell suspension was prepared by further digesting seminiferous tubules in 1 ml of 0,05% trypsin (Life technologies) and DNase (Sigma), added to 0,05 mg/ml of final concentration, at 32oC for 8-10 minutes shaking. After digestion trypsin was neutralized by adding 100 μl of FCS. Cells were spun and resuspended in PBS with 3% FCS. Germ cells were stained with following antibodies: c-Kit 1:800 (eBioscience), CD45-biotin 1:400 (eBioscience), CD51-biotin 1:100 (Biolegend), streptavidin-qDot 1:50 (eBioscience), CD9 1:50 (eBioscience) in PBS with 3% of FCS and 0,01% sodium azide. SYTOX Blue (Life technologies) was used as a living dye. Target population was selected by excluding cell doublets and CD45pos and CD51pos cells by initially choosing to analyze cells with low side scatter and negative for live cell dye SYTOX Blue. Among CD45neg and CD51neg cells, a target population was identified as c-Kitneg and having a live fluorescence of tdTomato and being CD9pos. Cells were sorted with an 85μm nozzle using a FACSAria II SORP (BD Biosciences). This strategy results in the isolation of undifferentiated spermatogonia with a purity of greater than 98%. Sorted cells were digested with proteinase K at 55C over night. The DNA was extracted using 1 Volume Phenol/Chloroform twice followed by the addition of 1 Volume chloroform and then DNA was precipitated by addition of 1 volume isopropanol with the addition of linear acrylamide and washed with 70% Ethanol before resuspension. For bisulfite conversion DNA was isolated from sorted cells as described above. Whole genome bisulfite sequencing libraries were generated using a post-bisulfite adaptor tagging (PBAT) method as previously described4 using 10 cycles of PCR amplification. Three biological replicates were generated per genotype.

characteristic: description

text: Miwi2-tdTom/+; Dnmt3l-/-

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: CD45-negative, CD51-negative, c-Kit-negative, tdTomato-pos, CD9-positive

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

text: mixed 129-C57Bl/6

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Epigenetics Programme, Babraham Institute, Cambridge, UK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: undifferentiated spermatogonia

text: house mouse

text: Miwi2-tdTom/+; Dnmt3l-/-

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: mixed 129-C57Bl/6


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collection date

text: United States, Indiana

characteristic: country

text: Acinetobacter pittii

characteristic: organism

text: Acinetobacter pittii

characteristic: title


E-MTAB-6576:31-tRNA-seq, 0.1mM H2O2

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:31-tRNA-seq, 0.1mM H2O2

tag: Namespace:RIKEN Brain Science Institute

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Protocols: Wild-type, BY4741, Yeast cells were treated with or without stresses before a 2-min treatment of cycloheximide. Cells were quickly frozen in liquid nitrogen for at least 5 mins and fragmented with metal beads under frozen condition. The yeast cell was cultured in YPD medium at 30 degree The treatment of the stresses was 1 hour, except amino acid starvation, SD-mini, which the treatment time was 20 mins. 3AT means 3-Amino-1,2,4-triazole, is a competitive inhibitor of the product of the HIS3 gene. The treatment is 100mM for 1hr in histidine depletion medium. The final concentration of 4EGI-1 treatment is 100uM for 1hr. Total RNA was extracted by phenol/chloroform method. tRNA molecular and mRNA fragments were recycling for library generation. Check the details of the protocol in Chen and Tanaka, Cell Reports 2018.

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 31-tRNA-seq, 0.1mM H2O2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:32-Ribo-tRNA-seq, 0.1mM H2O2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 32-Ribo-tRNA-seq, 0.1mM H2O2


E-MTAB-6576:33-mRNA-seq, 0.1mM H2O2

characteristic: External Id

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6576:33-mRNA-seq, 0.1mM H2O2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 33-mRNA-seq, 0.1mM H2O2


text: RIKEN Brain Science Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6576:34-Ribo-mRNA-seq, 0.1mM H2O2

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 34-Ribo-mRNA-seq, 0.1mM H2O2


name: E-MTAB-6576:111-tRNA-seq, 0.5mM H2O2 rep2

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 111-tRNA-seq, 0.5mM H2O2 rep2

characteristic: title


name: E-MTAB-6576:112-Ribo-tRNA-seq, 0.5mM H2O2 rep2

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 112-Ribo-tRNA-seq, 0.5mM H2O2 rep2


name: E-MTAB-6576:123-tRNA-seq, 0.5mM H2O2 rep3

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 123-tRNA-seq, 0.5mM H2O2 rep3


name: E-MTAB-6576:124-Ribo-tRNA-seq, 0.5mM H2O2 rep3

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 124-Ribo-tRNA-seq, 0.5mM H2O2 rep3


name: E-MTAB-6576:35-tRNA-seq, 0.5mM H2O2 rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 35-tRNA-seq, 0.5mM H2O2 rep1


name: E-MTAB-6576:36-Ribo-tRNA-seq, 0.5mM H2O2 rep1

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 36-Ribo-tRNA-seq, 0.5mM H2O2 rep1


name: E-MTAB-6576:37-mRNA-seq, 0.5mM H2O2 rep1

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 37-mRNA-seq, 0.5mM H2O2 rep1


name: E-MTAB-6576:38-Ribo-mRNA-seq, 0.5mM H2O2 rep1

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 38-Ribo-mRNA-seq, 0.5mM H2O2 rep1


name: E-MTAB-6576:100-Ribo-tRNA-seq, 0C cold rep2

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 100-Ribo-tRNA-seq, 0C cold rep2


E-MTAB-6576:119-tRNA-seq, 0C cold rep3

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:119-tRNA-seq, 0C cold rep3

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 119-tRNA-seq, 0C cold rep3

characteristic: title


name: E-MTAB-6576:120-Ribo-tRNA-seq, 0C cold rep3

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 120-Ribo-tRNA-seq, 0C cold rep3


E-MTAB-6576:49-tRNA-seq, 0C cold rep1

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:49-tRNA-seq, 0C cold rep1

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 49-tRNA-seq, 0C cold rep1


name: E-MTAB-6576:50-Ribo-tRNA-seq, 0C cold rep1

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 50-Ribo-tRNA-seq, 0C cold rep1


E-MTAB-6576:51-mRNA-seq, 0C cold rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:51-mRNA-seq, 0C cold rep1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 51-mRNA-seq, 0C cold rep1


name: E-MTAB-6576:52-Ribo-mRNA-seq, 0C cold rep1

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 52-Ribo-mRNA-seq, 0C cold rep1


E-MTAB-6576:99-tRNA-seq, 0C cold rep2

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6576:99-tRNA-seq, 0C cold rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 99-tRNA-seq, 0C cold rep2


name: E-MTAB-6576:103-tRNA-seq, 1M sorbitol rep2

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 103-tRNA-seq, 1M sorbitol rep2


name: E-MTAB-6576:104-Ribo-tRNA-seq, 1M sorbitol rep2

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 104-Ribo-tRNA-seq, 1M sorbitol rep2


name: E-MTAB-6576:113-tRNA-seq, 1M sorbitol rep3

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 113-tRNA-seq, 1M sorbitol rep3

characteristic: title


name: E-MTAB-6576:114-Ribo-tRNA-seq, 1M sorbitol rep3

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 114-Ribo-tRNA-seq, 1M sorbitol rep3


name: E-MTAB-6576:59-mRNA-seq, 1M sorbitol rep1

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 59-mRNA-seq, 1M sorbitol rep1


name: E-MTAB-6576:60-Ribo-mRNA-seq, 1M sorbitol rep1

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 60-Ribo-mRNA-seq, 1M sorbitol rep1


name: E-MTAB-6576:67-tRNA-seq, 1M sorbitol rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 67-tRNA-seq, 1M sorbitol rep1


name: E-MTAB-6576:68-Ribo-tRNA-seq, 1M sorbitol rep1

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 68-Ribo-tRNA-seq, 1M sorbitol rep1


E-MTAB-6576:15-tRNA-seq, 2mM H2O2 rep2

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6576:15-tRNA-seq, 2mM H2O2 rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 15-tRNA-seq, 2mM H2O2 rep2


name: E-MTAB-6576:16-Ribo-tRNA-seq, 2mM H2O2 rep2, 3 files

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


name: E-MTAB-6576:17-mRNA-seq, 2mM H2O2 rep2, 3 files

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 17-mRNA-seq, 2mM H2O2 rep2, 3 files


name: E-MTAB-6576:18-Ribo-mRNA-seq, 2mM H2O2 rep2, 9 files

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


E-MTAB-6576:3-tRNA-seq, 2mM H2O2 rep1

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:3-tRNA-seq, 2mM H2O2 rep1

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 3-tRNA-seq, 2mM H2O2 rep1


E-MTAB-6576:39-tRNA-seq, 2mM H2O2 rep3

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:39-tRNA-seq, 2mM H2O2 rep3

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 39-tRNA-seq, 2mM H2O2 rep3


name: E-MTAB-6576:4-Ribo-tRNA-seq, 2mM H2O2 rep1

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 4-Ribo-tRNA-seq, 2mM H2O2 rep1


name: E-MTAB-6576:40-Ribo-tRNA-seq, 2mM H2O2 rep3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 40-Ribo-tRNA-seq, 2mM H2O2 rep3


E-MTAB-6576:41-mRNA-seq, 2mM H2O2 rep3

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:41-mRNA-seq, 2mM H2O2 rep3

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 41-mRNA-seq, 2mM H2O2 rep3


name: E-MTAB-6576:42-Ribo-mRNA-seq, 2mM H2O2 rep3

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 42-Ribo-mRNA-seq, 2mM H2O2 rep3


name: E-MTAB-6576:149-tRNA-seq, 3AT, His-depletion rep1

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 149-tRNA-seq, 3AT, His-depletion rep1


name: E-MTAB-6576:150-Ribo-tRNA-seq, 3AT, His-depletion rep1

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


name: E-MTAB-6576:155-tRNA-seq, 3AT, His-depletion rep2

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 155-tRNA-seq, 3AT, His-depletion rep2

characteristic: title


name: E-MTAB-6576:156-Ribo-tRNA-seq, 3AT, His-depletion rep2

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


name: E-MTAB-6576:157-mRNA-seq, 3AT, His-depletion rep2

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 157-mRNA-seq, 3AT, His-depletion rep2


name: E-MTAB-6576:158-Ribo-mRNA-seq, 3AT, His-depletion rep2

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


E-MTAB-6576:101-tRNA-seq, 42C heat rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:101-tRNA-seq, 42C heat rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 101-tRNA-seq, 42C heat rep2


name: E-MTAB-6576:102-Ribo-tRNA-seq, 42C heat rep2

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 102-Ribo-tRNA-seq, 42C heat rep2


E-MTAB-6576:121-tRNA-seq, 42C heat rep3

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6576:121-tRNA-seq, 42C heat rep3

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 121-tRNA-seq, 42C heat rep3


name: E-MTAB-6576:122-Ribo-tRNA-seq, 42C heat rep3

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 122-Ribo-tRNA-seq, 42C heat rep3


E-MTAB-6576:55-mRNA-seq, 42C heat rep1

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

text: E-MTAB-6576:55-mRNA-seq, 42C heat rep1

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 55-mRNA-seq, 42C heat rep1


name: E-MTAB-6576:56-Ribo-mRNA-seq, 42C heat rep1

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 56-Ribo-mRNA-seq, 42C heat rep1

characteristic: title


E-MTAB-6576:63-tRNA-seq, 42C heat rep2

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:63-tRNA-seq, 42C heat rep2

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 63-tRNA-seq, 42C heat rep2


name: E-MTAB-6576:64-Ribo-tRNA-seq, 42C heat rep2

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 64-Ribo-tRNA-seq, 42C heat rep2


E-MTAB-6576:81-tRNA-seq, 4EGI-1 rep1

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:81-tRNA-seq, 4EGI-1 rep1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 81-tRNA-seq, 4EGI-1 rep1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:82-Ribo-tRNA-seq, 4EGI-1 rep1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 82-Ribo-tRNA-seq, 4EGI-1 rep1


E-MTAB-6576:83-mRNA-seq, 4EGI-1 rep1

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:83-mRNA-seq, 4EGI-1 rep1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 83-mRNA-seq, 4EGI-1 rep1


text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6576:84-Ribo-mRNA-seq, 4EGI-1 rep1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 84-Ribo-mRNA-seq, 4EGI-1 rep1


E-MTAB-6576:91-tRNA-seq, 4EGI-1 rep2

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6576:91-tRNA-seq, 4EGI-1 rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 91-tRNA-seq, 4EGI-1 rep2


text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

text: E-MTAB-6576:92-Ribo-tRNA-seq, 4EGI-1 rep2

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 92-Ribo-tRNA-seq, 4EGI-1 rep2


E-MTAB-6576:95-tRNA-seq, 4EGI-1 rep3

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:95-tRNA-seq, 4EGI-1 rep3

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 95-tRNA-seq, 4EGI-1 rep3

characteristic: title


text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:96-Ribo-tRNA-seq, 4EGI-1 rep3

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 96-Ribo-tRNA-seq, 4EGI-1 rep3


name: E-MTAB-6576:107-tRNA-seq, 5mM copper rep3

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 107-tRNA-seq, 5mM copper rep3


name: E-MTAB-6576:108-Ribo-tRNA-seq, 5mM copper rep3

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 108-Ribo-tRNA-seq, 5mM copper rep3


name: E-MTAB-6576:47-tRNA-seq, 5mM copper rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 47-tRNA-seq, 5mM copper rep1


name: E-MTAB-6576:48-Ribo-tRNA-seq, 5mM copper rep1

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 48-Ribo-tRNA-seq, 5mM copper rep1


name: E-MTAB-6576:71-tRNA-seq, 5mM copper rep2

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 71-tRNA-seq, 5mM copper rep2


name: E-MTAB-6576:72-Ribo-tRNA-seq, 5mM copper rep2

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 72-Ribo-tRNA-seq, 5mM copper rep2


E-MTAB-6576:115-tRNA-seq, SD-mini rep3

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

text: E-MTAB-6576:115-tRNA-seq, SD-mini rep3

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 115-tRNA-seq, SD-mini rep3


text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:116-Ribo-tRNA-seq, SD-mini rep3

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 116-Ribo-tRNA-seq, SD-mini rep3

characteristic: title


E-MTAB-6576:23-tRNA-seq, SD-mini rep1

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:23-tRNA-seq, SD-mini rep1

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 23-tRNA-seq, SD-mini rep1


text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:24-Ribo-tRNA-seq, SD-mini rep1

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 24-Ribo-tRNA-seq, SD-mini rep1


name: E-MTAB-6576:25-mRNA-seq, SD-mini rep1, 3 files

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 25-mRNA-seq, SD-mini rep1, 3 files


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:26-Ribo-mRNA-seq, SD-mini rep1

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 26-Ribo-mRNA-seq, SD-mini rep1


E-MTAB-6576:85-tRNA-seq, SD-mini rep2

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:85-tRNA-seq, SD-mini rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 85-tRNA-seq, SD-mini rep2


text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6576:86-Ribo-tRNA-seq, SD-mini rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 86-Ribo-tRNA-seq, SD-mini rep2


E-MTAB-6576:87-mRNA-seq, SD-mini rep2

text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6576:87-mRNA-seq, SD-mini rep2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 87-mRNA-seq, SD-mini rep2


text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

text: E-MTAB-6576:88-Ribo-mRNA-seq, SD-mini rep2

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 88-Ribo-mRNA-seq, SD-mini rep2


name: E-MTAB-6576:1-tRNA-seq, control for 3,5,7,8

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 1-tRNA-seq, control for 3,5,7,8

characteristic: title


text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:10-Ribo-tRNA-seq, pH7.5 buffer

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 10-Ribo-tRNA-seq, pH7.5 buffer


name: E-MTAB-6576:105-tRNA-seq, control for 107

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 105-tRNA-seq, control for 107


name: E-MTAB-6576:106-Ribo-tRNA-seq, control for 108

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 106-Ribo-tRNA-seq, control for 108


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:109-tRNA-seq, control for 111, 113, 115

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 109-tRNA-seq, control for 111, 113, 115


E-MTAB-6576:11-tRNA-seq, control for 15

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:11-tRNA-seq, control for 15

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 11-tRNA-seq, control for 15


name: E-MTAB-6576:110-Ribo-tRNA-seq, control for 112, 114, 116

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6576:117-tRNA-seq, control for 119, 121, 123

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 117-tRNA-seq, control for 119, 121, 123


name: E-MTAB-6576:118-Ribo-tRNA-seq, control for 120, 122, 124

text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


name: E-MTAB-6576:12-Ribo-tRNA-seq, control for 16, 3 files

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


E-MTAB-6576:125-tRNA-seq, pre-lysis CHX

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:125-tRNA-seq, pre-lysis CHX

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 125-tRNA-seq, pre-lysis CHX


text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:126-Ribo-tRNA-seq, pre-lysis CHX

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 126-Ribo-tRNA-seq, pre-lysis CHX


E-MTAB-6576:127-mRNA-seq, pre-lysis CHX

characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:127-mRNA-seq, pre-lysis CHX

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 127-mRNA-seq, pre-lysis CHX


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:128-Ribo-mRNA-seq, pre-lysis CHX

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 128-Ribo-mRNA-seq, pre-lysis CHX


characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:129-tRNA-seq, post-lysis CHX

text: ArrayExpress

text: baker's yeast

text: Protocols: Wild-type, BY4741, Yeast cells were treated with or without stresses before a 2-min treatment of cycloheximide. Cells were quickly frozen in liquid nitrogen for at least 5 mins and fragmented with metal beads under frozen condition. The yeast cell was cultured in YPD medium at 30 degree The treatment of the stresses was 1 hour, except amino acid starvation, SD-mini, which the treatment time was 20 mins. 3AT means 3-Amino-1,2,4-triazole, is a competitive inhibitor of the product of the HIS3 gene. The treatment is 100mM for 1hr in histidine depletion medium. The final concentration of 4EGI-1 treatment is 100uM for 1hr. Total RNA was extracted by phenol/chloroform method. tRNA molecular and mRNA fragments were recycling for library generation. Check the details of the protocol in Chen and Tanaka, Cell Reports 2018.

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: 129-tRNA-seq, post-lysis CHX


name: E-MTAB-6576:13-mRNA-seq, control for 17, 3 files

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 13-mRNA-seq, control for 17, 3 files


text: RIKEN Brain Science Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6576:130-Ribo-tRNA-seq, post-lysis CHX

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 130-Ribo-tRNA-seq, post-lysis CHX


text: RIKEN Brain Science Institute

characteristic: INSDC first public

text: public

text: E-MTAB-6576:131-mRNA-seq, post-lysis CHX

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 131-mRNA-seq, post-lysis CHX


text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:132-Ribo-mRNA-seq, post-lysis CHX

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 132-Ribo-mRNA-seq, post-lysis CHX

characteristic: title


name: E-MTAB-6576:133-tRNA-seq, control for 135, 137

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 133-tRNA-seq, control for 135, 137


name: E-MTAB-6576:134-Ribo-tRNA-seq, control for 136, 138

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

characteristic: description

text: wild type genotype

characteristic: genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 134-Ribo-tRNA-seq, control for 136, 138


characteristic: ENA-CHECKLIST

text: RIKEN Brain Science Institute

text: public

text: E-MTAB-6576:139-tRNA-seq, control for 141, 143, 145

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 139-tRNA-seq, control for 141, 143, 145


name: E-MTAB-6576:14-Ribo-mRNA-seq, control for 18, 9 files

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


name: E-MTAB-6576:140-Ribo-tRNA-seq, control for 142, 144, 146

characteristic: External Id

text: RIKEN Brain Science Institute

text: public

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain


name: E-MTAB-6576:147-tRNA-seq, control for 149

text: RIKEN Brain Science Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: YPD medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: 147-tRNA-seq, control for 149