text: Saccharomyces cerevisiae

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text: 2014STDY5370509-sc-2012-09-24T16:40:29Z-1450434

text: baker's yeast

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text: Saccharomyces cerevisiae


status: PUBLIC

text: Saccharomyces cerevisiae

tag: attribute

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

characteristic: SRA accession

text: 2014STDY5370436-sc-2012-09-24T16:38:54Z-1450361

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

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text: public

text: 2014STDY5370456-sc-2012-09-24T16:39:18Z-1450381

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

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text: 2014STDY5370471-sc-2012-09-24T16:39:39Z-1450396

text: baker's yeast

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text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

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text: 2014STDY5370512-sc-2012-09-24T16:40:32Z-1450437

text: baker's yeast

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text: 2014STDY5370451-sc-2012-09-24T16:39:12Z-1450376

text: baker's yeast

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text: Saccharomyces cerevisiae

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text: 2014STDY5370490-sc-2012-09-24T16:40:05Z-1450415

text: baker's yeast

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text: 2014STDY5370437-sc-2012-09-24T16:38:55Z-1450362

text: baker's yeast

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text: 2014STDY5370489-sc-2012-09-24T16:40:04Z-1450414

text: baker's yeast

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text: 2014STDY5370455-sc-2012-09-24T16:39:17Z-1450380

text: baker's yeast

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text: 2014STDY5370429-sc-2012-09-24T16:38:45Z-1450354

text: baker's yeast

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text: 2014STDY5370469-sc-2012-09-24T16:39:34Z-1450394

text: baker's yeast

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text: 2014STDY5370492-sc-2012-09-24T16:40:07Z-1450417

text: baker's yeast

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text: baker's yeast

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text: 2014STDY5370468-sc-2012-09-24T16:39:32Z-1450393

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text: baker's yeast

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text: 2014STDY5370439-sc-2012-09-24T16:38:57Z-1450364

text: baker's yeast

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text: Saccharomyces cerevisiae


text: Saccharomyces cerevisiae

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text: 2014STDY5370467-sc-2012-09-24T16:39:31Z-1450392

text: baker's yeast

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text: 2014STDY5370508-sc-2012-09-24T16:40:28Z-1450433

text: baker's yeast

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text: 2014STDY5370493-sc-2012-09-24T16:40:08Z-1450418

text: baker's yeast

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text: 2014STDY5370495-sc-2012-09-24T16:40:12Z-1450420

text: baker's yeast

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text: 2014STDY5370440-sc-2012-09-24T16:38:59Z-1450365

text: baker's yeast

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text: 2014STDY5370427-sc-2012-09-24T16:38:43Z-1450352

text: baker's yeast

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text: 2014STDY5370452-sc-2012-09-24T16:39:13Z-1450377

text: baker's yeast

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text: 2014STDY5370504-sc-2012-09-24T16:40:23Z-1450429

text: baker's yeast

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text: 2014STDY5370505-sc-2012-09-24T16:40:24Z-1450430

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text: 2014STDY5370426-sc-2012-09-24T16:38:42Z-1450351

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text: 2014STDY5370480-sc-2012-09-24T16:39:50Z-1450405

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text: 2014STDY5370484-sc-2012-09-24T16:39:58Z-1450409

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text: 2014STDY5370462-sc-2012-09-24T16:39:25Z-1450387

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text: 2014STDY5370488-sc-2012-09-24T16:40:03Z-1450413

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text: 2014STDY5370472-sc-2012-09-24T16:39:41Z-1450397

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text: 2014STDY5370419-sc-2012-09-24T16:38:33Z-1450344

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text: 2014STDY5370485-sc-2012-09-24T16:39:59Z-1450410

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text: 2014STDY5370445-sc-2012-09-24T16:39:05Z-1450370

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text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

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characteristic: ENA-KEYWORD

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characteristic: MG-RAST ID

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unit: g

characteristic: amount or size of sample collected

text: EMG

characteristic: broker name

characteristic: collection date

unit: m

characteristic: depth

text: Low pH soil from UK Countryside Survey

characteristic: description

text: not available

characteristic: elevation

text: soil

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: soil ENVO:00001998

characteristic: environment (featurel)

text: soil ENVO:00001998

characteristic: environment (material)

text: not available

characteristic: geographic location (latitude)

text: not available

characteristic: geographic location (longitude)

text: MIMS

characteristic: investigation type

text: soil metagenome

characteristic: ph

text: UK SOILS

characteristic: project name

text: soil metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: title

type: has member


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characteristic: ENA-CHECKLIST

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characteristic: amount or size of sample collected

text: EMG

text: High pH soil from UK Countryside Survey

text: not available

text: soil

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text: soil ENVO:00001998

text: soil ENVO:00001998

text: not available

text: not available

text: MIMS

text: soil metagenome

characteristic: organism

text: UK SOILS

text: soil metagenome

text: Pyrosequencing


Palsa peat soil (below 20 cm)

text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

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text: UBay

text: public

text: Palsa peat soil (below 20 cm)

characteristic: carbon/nitrogen ratio

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text: palsa peat soil, lower part of active layer

characteristic: current vegetation

characteristic: depth

text: DNA extract of soil taken from below 20 cm palsa peat soil in Finnish Lapland

characteristic: description

text: soil

characteristic: enviornmental package

characteristic: environment (biome)

characteristic: environment (featurel)

characteristic: environment (material)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: MIxS

characteristic: investigation type

text: mean monthly precipitation 35 mm

characteristic: mean annual and seasonal precipitation

text: mean annual temperature -1.6

characteristic: mean annual and seasonal temperature

characteristic: nucleic acid extraction

text: soil metagenome

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text: Denitrification in palsa peat soil

characteristic: project name

text: shovel

characteristic: sample collection device or method

text: soil transported on ice from the field on frozen immediately afterwards

characteristic: sample material processing

characteristic: sample weight for DNA extraction

text: soil metagenome

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text: frozen

characteristic: storage conditions (fresh/frozen/other)

characteristic: temperature

text: Structural gene markers for denitrification from below 20 cm palsa peat soil

characteristic: total carbon

characteristic: total n

characteristic: water content of soil


Palsa peat soil (0-20 cm)

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text: Palsa peat soil (0-20 cm)

characteristic: Submitter Id

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text: palsa peat soil, upper part of active layer

characteristic: current vegetation

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text: DNA extract of soil taken from 0 to 20 cm palsa peat soil in Finnish Lapland

characteristic: description

text: soil

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characteristic: environment (biome)

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text: MIxS

text: mean monthly precipitation 35 mm

text: mean annual temperature -1.6

text: soil metagenome

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text: Denitrification in palsa peat soil

text: shovel

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text: frozen

text: Structural gene markers for denitrification from 0-20 cm palsa peat soil

characteristic: title


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text: SC

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text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Cells were lysed with Trizol while sub-confluent. Large RNA was removed from the small RNA fraction using the RNeasy Mini Kit (Qiagen), and small RNAs were collected by isopropanol precipitation and quantitated on an Agilent Technologies 2100.

text: Dgcr8 gt1/tm1

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: SC

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characteristic: INSDC status

characteristic: SRA accession

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text: house mouse

characteristic: description

text: Dgcr8 tm1,gt2/+

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: SC

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text: house mouse

text: Dgcr8 gt2/tm1

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: SC

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text: ArrayExpress

text: house mouse

text: Dgcr8 tm1,gt1/+

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: SC

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text: house mouse

text: Dgcr8 +/+

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: WT


text: Anopheles gambiae

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text: SC

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text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Anopheles arabiensis

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text: Southern African malaria mosquito

text: Anopheles arabiensis

characteristic: organism

text: Anopheles arabiensis


text: A. arabiensis

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text: Southern African malaria mosquito

text: Anopheles arabiensis

text: Anopheles arabiensis


text: Whole embryo

characteristic: ArrayExpress-CellType

text: Blastula

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Wild type

characteristic: ArrayExpress-Phenotype

text: Danio rerio

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text: 256_sample_3-sc-2012-02-29T14:46:42Z-1372845

text: zebrafish

text: Danio rerio

text: RNA-seq of multiple whole zebrafish embryos.

characteristic: sample description

text: Danio rerio


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text: Whole embryo

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text: T/LF

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: Control_sample_6-sc-2012-02-29T14:46:32Z-1372836

text: zebrafish

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text: Danio rerio

text: Danio rerio


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text: 16C_stan_pro-sc-2012-02-06T13:12:14Z-1121921

characteristic: Submitter Id

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text: RNA seq

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text: 9 hpf

characteristic: ArrayExpress-DevelopmentalStage

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characteristic: ENA-FIRST-PUBLIC

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text: RNA seq

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text: WIK

characteristic: strain


text: Whole embryo

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text: Wild type

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text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 128c_sample_4-sc-2012-02-29T14:46:37Z-1372840

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio


text: 2 cell

text: SAT/WIK

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: WT

text: Danio rerio

characteristic: ArrayExpress-Species

text: SAT

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

characteristic: organism

text: RNA seq

text: Danio rerio

text: SAT


text: Whole embryo

text: Blastula

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Wild type

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: SC

text: public

text: 256_sample_4-sc-2012-02-29T14:46:42Z-1372846

text: zebrafish

text: Danio rerio

characteristic: sample description

text: Danio rerio


text: Whole embryo

characteristic: ArrayExpress-CellType

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 128c_sample_1-sc-2012-02-29T14:46:33Z-1372837

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Whole embryo

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Control_sample_2-sc-2012-02-29T14:46:27Z-1372832

text: zebrafish

text: Danio rerio

text: Danio rerio


text: UFE

text: T/LF

text: Whole embryo

text: WT

text: mixed

characteristic: ArrayExpress-Sex

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: UFE_stan_pro-sc-2012-02-06T13:12:10Z-1121920

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: T/LF

characteristic: strain


text: Sphere

text: WIK

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: WT

text: Danio rerio

characteristic: ArrayExpress-Species

text: WIK

text: SC

text: public

text: WIK_sphere-sc-2012-02-06T13:05:06Z-265520

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: RNA seq

text: Danio rerio

text: WIK


text: 9 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WIK/SAT

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: WIK

text: SC

text: public

text: zebrafish

text: Danio rerio

text: RNA seq

characteristic: sample description

text: Danio rerio

text: WIK


text: shield

text: SAT/WIK

text: Whole embryo

text: WT

text: Danio rerio

text: SAT

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: SAT


text: Whole embryo

characteristic: ArrayExpress-CellType

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 256_sample_5-sc-2012-02-29T14:46:43Z-1372847

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Whole embryo

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 128c_sample_5-sc-2012-02-29T14:46:38Z-1372841

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Whole embryo

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

text: public

text: 128c_sample_6-sc-2012-02-29T14:46:39Z-1372842

text: zebrafish

text: Danio rerio

text: Danio rerio


text: WT

characteristic: ArrayExpress-DiseaseState

text: Whole embryo

text: WT

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: zebrafish cell cycle experiment

text: Danio rerio

text: T/LF

characteristic: strain


text: Whole embryo

text: Blastula

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Wild type

text: Danio rerio

text: SC

text: public

text: 256_sample_1-sc-2012-02-29T14:46:40Z-1372843

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Danio rerio


text: High

text: T/LF

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: WT

characteristic: ArrayExpress-Phenotype

text: mixed

characteristic: ArrayExpress-Sex

text: Danio rerio

text: T/LF

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: High_TotRNA-sc-2012-02-06T13:12:19Z-1121924

text: zebrafish

text: Danio rerio

text: RNA seq

characteristic: sample description

text: Danio rerio

text: T/LF


text: high

text: WIK/SAT

text: Whole embryo

text: WT

text: Danio rerio

text: WIK

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: WIK


text: high

text: SAT/WIK

text: Whole embryo

text: WT

text: Danio rerio

characteristic: ArrayExpress-Species

text: SAT

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: SAT


text: Whole embryo

characteristic: ArrayExpress-CellType

text: Blastula

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Wild type

text: Danio rerio

text: SC

text: public

text: 128c_sample_2-sc-2012-02-29T14:46:34Z-1372838

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio


text: Whole embryo

text: Blastula

text: Whole embryo

text: Wild type

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: SC

text: public

text: 256_sample_6-sc-2012-02-29T14:46:44Z-1372848

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio


text: Sphere

text: SAT

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: WT

text: Danio rerio

text: SAT

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SAT_sphere-sc-2012-02-06T13:02:24Z-118130

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: SAT

characteristic: strain


text: shield

text: WIK/SAT

text: Whole embryo

text: WT

text: Danio rerio

text: WIK

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: RNA seq

characteristic: sample description

text: Danio rerio

text: WIK


text: Whole embryo

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Control_sample_3-sc-2012-02-29T14:46:29Z-1372833

text: zebrafish

text: Danio rerio

text: RNA-seq of multiple whole zebrafish embryos.

text: Danio rerio


text: 64 cell

text: SAT/WIK

text: Whole embryo

text: WT

text: Danio rerio

text: SAT

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: SAT


text: 2 cell

characteristic: ArrayExpress-DevelopmentalStage

text: T/LF

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: WT

text: mixed

characteristic: ArrayExpress-Sex

text: Danio rerio

text: T/LF

text: SC

text: public

text: 2C_TotRNA-sc-2012-02-06T13:12:17Z-1121923

text: zebrafish

characteristic: common name

text: Danio rerio

text: RNA seq

text: Danio rerio

text: T/LF


text: Whole embryo

characteristic: ArrayExpress-CellType

text: Blastula

text: Whole embryo

text: Wild type

characteristic: ArrayExpress-Phenotype

text: Danio rerio

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 256_sample_2-sc-2012-02-29T14:46:41Z-1372844

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio


text: 2 cell

text: WIK/SAT

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: WT

text: Danio rerio

text: WIK

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: RNA seq

text: Danio rerio

text: WIK

characteristic: strain


text: Whole embryo

text: Blastula

text: Whole embryo

text: Wild type

text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Control_sample_1-sc-2012-02-29T14:46:24Z-1372831

text: zebrafish

text: Danio rerio

characteristic: sample description

text: Danio rerio


text: Whole embryo

text: Blastula

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Wild type

text: Danio rerio

text: SC

text: public

characteristic: SRA accession

text: Control_sample_4-sc-2012-02-29T14:46:30Z-1372834

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Whole embryo

characteristic: ArrayExpress-CellType

text: Blastula

text: Whole embryo

text: Wild type

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: SC

text: public

text: 128c_sample_3-sc-2012-02-29T14:46:36Z-1372839

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio


text: UFE

text: T/LF

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: WT

text: mixed

characteristic: ArrayExpress-Sex

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: UFE_TotRNA-sc-2012-02-06T13:12:15Z-1121922

text: zebrafish

text: Danio rerio

characteristic: organism

text: RNA seq

text: Danio rerio

text: T/LF


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: 3594_MBNCT4-sc-2012-09-25T13:35:50Z-1484236

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WT_neural_stem_cell_mRNA_1-sc-2012-03-22T14:01:01Z-1264792

text: human

text: Homo sapiens

text: WT neural stem cell mRNA 1

characteristic: sample description

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

characteristic: SRA accession

text: 3597_MBNCT7-sc-2012-09-25T13:35:50Z-1484235

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WT_neural_stem_cell_mRNA_2-sc-2012-03-22T13:55:56Z-1264793

text: human

text: Homo sapiens

text: WT neural stem cell mRNA 2

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ES_cell_short_RNA_1-sc-2012-03-22T13:55:43Z-1264785

text: human

text: Homo sapiens

text: ES cell short RNA 1

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ES_cell_short_RNA_2-sc-2012-03-22T14:00:58Z-1264786

text: human

text: Homo sapiens

text: ES cell short RNA 2

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: DNMT3A_KO_neural_stem_cell_short_RNA_1-sc-2012-03-22T14:05:47Z-1264789

text: human

text: Homo sapiens

text: DNMT3A KO neural stem cell short RNA 1

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: 3596_MBNCT6-sc-2012-09-25T13:35:48Z-1484234

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ES_cell_long_RNA_1-sc-2012-03-22T13:55:46Z-1264787

text: human

text: Homo sapiens

text: ES cell long RNA 1

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WT_neural_stem_cell_short_RNA_1-sc-2012-03-22T13:55:47Z-1264788

text: human

text: Homo sapiens

text: WT neural stem cell short RNA 1

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WT_neural_stem_cell_long_RNA_2-sc-2012-03-22T13:55:53Z-1264791

text: human

text: Homo sapiens

text: WT neural stem cell long RNA 2

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WT_neural_stem_cell_long_RNA_1-sc-2012-03-22T13:55:52Z-1264790

text: human

text: Homo sapiens

text: WT neural stem cell long RNA 1

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: 3592_MBNCT2-sc-2012-09-25T13:35:47Z-1484233

text: human

text: Homo sapiens

text: Homo sapiens


E-MTAB-1043:Col x Ler

text: public

text: E-MTAB-1043:Col x Ler

tag: Namespace:University of Cologne, Cologne Center for Genomics

text: 10 day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: A. thaliana plants of the accessions Col and Ler were used as genetic background. For intraspecific crossing, Col and Ler plants were grown on soil in LD conditions. Five flower buds on the primary shoot and two side shoots were emasculated and manually cross pollinated, while all other flower buds were removed. The seeds of each genotype were pooled and the success rate of the crosses was determined by PCR using primers that detected an insertion between Ler and Col (fw: 5-ctggagatcatccaacaaagg-3, rv: 5-ggcaatggaatgggctggtc-3). Seed pools with less than 10 % maternal contamination were used in the F1 hybrid studies. Hybrids of the F1 generation were grown in LD (16-hours light, 8-hours dark) at 20C constant temperature on Murashige and Skoog (GM) medium supplemented with 1 % sucrose after stratification at 4C for 2-4 days to synchronize germination. Light was provided by fluorescent tubes complemented by incandescent bulbs to increase the proportion of far red light. Nuclear extraction and ChIP experiments were performed as described in J.J. Reimer and F. Turck; Genome-wide mapping of protein-DNA interaction by chromatin immunoprecipitation and DNA microarray hybridization (ChIP-chip). Part A: ChIP-chip molecular methods, Methods Mol Biol, 631, 139-160, 2010.

characteristic: description

text: seedling

characteristic: developmental stage

text: Col x Ler

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col x Ler

characteristic: title


E-MTAB-1043:Ler x Col

characteristic: ENA-FIRST-PUBLIC

text: University of Cologne, Cologne Center for Genomics

text: public

text: E-MTAB-1043:Ler x Col

text: 10 day

text: ArrayExpress

text: thale cress

characteristic: common name

text: seedling

text: Ler x Col

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Ler x Col


E-MTAB-1043:Col input

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-1043:Col input

text: 10 day

text: ArrayExpress

text: thale cress

text: seedling

text: Col wild_type

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col input


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: MPI-HLR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: eastern newt

text: Notophthalmus viridescens

text: Notophthalmus viridescens

text: Regenerating lens tissue by GAII


text: Babraham Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-1073:AG_SD7xB6_placenta_maternal_prey

tag: Namespace:Babraham Institute

text: ArrayExpress

text: house mouse

text: Protocols: 3C material was generated using BglII as a restriction enzyme. The bait fragment (Chr7: 150474507-150484686, NCBIM37) encompasses the whole KvDMR1, and was enriched by streptavidin pulldown of a biotinylated primer extension product using primer KvDMR-4C-ext as described in Schoenfelder et al., 2010. The 4-cutter Csp6I was used to cut within the prey region and create uniform ends for adapter ligation. A SNP at Chr7:150474522 (B6: T, SD7: C) was used to discriminate between alleles.

text: Mus musculus

text: Mus musculus

text: placenta

characteristic: organism part

text: maternal

characteristic: phenotype

text: Mus musculus


text: Babraham Institute

text: public

characteristic: SRA accession

text: E-MTAB-1073:AC_B6xSD7_placenta_paternal_bait

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Mus musculus

text: Mus musculus

text: placenta

text: paternal

text: Mus musculus


text: Babraham Institute

text: public

text: E-MTAB-1073:CC_B6xSD7_liver_paternal_prey

text: ArrayExpress

text: house mouse

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

text: paternal

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: Babraham Institute

text: public

text: E-MTAB-1073:CC_B6xSD7_liver_paternal_bait

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: paternal

text: Mus musculus

characteristic: title


text: Babraham Institute

text: public

text: E-MTAB-1073:AG_SD7xB6_placenta_maternal_bait

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: placenta

text: maternal

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Babraham Institute

text: public

text: E-MTAB-1073:CC_B6xSD7_liver_maternal_bait

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: maternal

text: Mus musculus


text: Babraham Institute

characteristic: INSDC center name

text: public

text: E-MTAB-1073:GG_SD7xB6_liver_paternal_bait

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: paternal

text: Mus musculus


text: Babraham Institute

characteristic: INSDC first public

text: public

text: E-MTAB-1073:AC_B6xSD7_placenta_maternal_bait

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: placenta

text: maternal

text: Mus musculus


text: Babraham Institute

characteristic: INSDC last update

text: public

text: E-MTAB-1073:AC_B6xSD7_placenta_maternal_prey

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: placenta

text: maternal

text: Mus musculus


text: Babraham Institute

text: public

characteristic: INSDC status

text: E-MTAB-1073:AG_SD7xB6_placenta_paternal_prey

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: placenta

text: paternal

text: Mus musculus


text: Babraham Institute

text: public

text: E-MTAB-1073:GG_SD7xB6_liver_paternal_prey

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: paternal

text: Mus musculus


text: Babraham Institute

text: public

text: E-MTAB-1073:GG_SD7xB6_liver_maternal_prey

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: maternal

characteristic: phenotype

text: Mus musculus


text: Babraham Institute

text: public

characteristic: SRA accession

text: E-MTAB-1073:AG_SD7xB6_placenta_paternal_bait

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: placenta

text: paternal

text: Mus musculus


text: Babraham Institute

text: public

text: E-MTAB-1073:CC_B6xSD7_liver_maternal_prey

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: maternal

text: Mus musculus


text: Babraham Institute

text: public

text: E-MTAB-1073:GG_SD7xB6_liver_maternal_bait

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Mus musculus

text: Mus musculus

text: liver

text: maternal

text: Mus musculus


text: Babraham Institute

text: public

text: E-MTAB-1073:AC_B6xSD7_placenta_paternal_prey

text: ArrayExpress

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: placenta

text: paternal

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: UU-EBC

text: public

text: collared flycatcher

text: adult

text: Ficedula albicollis

text: Ficedula albicollis

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: UU-EBC

text: public

text: collared flycatcher

text: embryo

text: Ficedula albicollis

text: Ficedula albicollis

text: male

characteristic: title


text: SRA-Webin

text: UU-EBC

text: public

text: collared flycatcher

characteristic: common name

text: embryo

text: Ficedula albicollis

characteristic: organism

text: Ficedula albicollis

text: female


characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: External Id

text: UU-EBC

text: public

text: collared flycatcher

text: adult

text: Ficedula albicollis

text: Ficedula albicollis

text: female


text: Cancer Research UK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-1104:tc1_28.1_m9_AND_28.2_m10_testes

tag: Namespace:Cancer Research UK

text: 2-6 month

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: doi:10.1016/j.ymeth.2009.03.001; Shortly, liver material was crosslinked in 1% formaldehyde for 20 minutes followed by a 10 minute incubation in 500 mM glycine buffer to neutralize the formaldehyde. Samples were rinsed with PBS and frozen until use. Human material was obtained from Addenbrooke¹s Hospital, Cambridge licence (08/H0308/117) and the Liver Tissue Distribution Program at the University of Pittsburgh (NIDDK Contract # N01-DK-9-2310). Formaldehyde-crosslinked/flash frozen tissue was stored at 80C at the CRI. Tc1 mice (annotated as Tc1_with_hschr21) were generated as described in (O¹Doherty et al., 2005). Mice were initially obtained from Victor Tybulewic and Elizabeth Fisher and subsequently housed and bred within the Biological Resources Unit at CRI. Tc0 mice (annotated as Tc1_without_hschr21) are Tc1 sibling mice (ie the same genetic background) that have not inherited a copy of HsChr21.

text: adult

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: testes

text: Mus musculus

text: male


text: Cancer Research UK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2-6 month

text: ArrayExpress

text: house mouse

text: Protocols: doi:10.1016/j.ymeth.2009.03.001; Shortly, liver material was crosslinked in 1% formaldehyde for 20 minutes followed by a 10 minute incubation in 500 mM glycine buffer to neutralize the formaldehyde. Samples were rinsed with PBS and frozen until use. Human material was obtained from Addenbrooke's Hospital, Cambridge licence (08/H0308/117) and the Liver Tissue Distribution Program at the University of Pittsburgh (NIDDK Contract # N01-DK-9-2310). Formaldehyde-crosslinked/flash frozen tissue was stored at -80 C at the CRI. Tc1 mice (annotated as Tc1_with_hschr21) were generated as described in (O'Doherty et al., 2005). Mice were initially obtained from Victor Tybulewic and Elizabeth Fisher and subsequently housed and bred within the Biological Resources Unit at CRI. Tc0 mice (annotated as Tc1_without_hschr21) are Tc1 sibling mice (ie the same genetic background) that have not inherited a copy of HsChr21.

text: adult

text: Mus musculus

text: Mus musculus

text: testes

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK

text: public

text: 2-6 month

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

text: Mus musculus

text: Mus musculus

text: muscle

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Cancer Research UK

text: public

text: >70 year

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: wild type

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: testes

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

text: Cancer Research UK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2-6 month

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male


text: Cancer Research UK

characteristic: INSDC last update

text: public

text: 56 year

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: muscle

text: Homo sapiens

text: male


text: Cancer Research UK

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2-6 month

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK

text: public

text: NA year

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: wild type

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Cancer Research UK

text: public

text: 62 year

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: wild type

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: testes

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

text: Cancer Research UK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 59 year

characteristic: age

text: ArrayExpress

text: human

text: adult

text: wild type

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: female


text: Cancer Research UK

characteristic: INSDC last update

text: public

text: 2-6 month

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male


text: Cancer Research UK

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NA year

text: ArrayExpress

text: human

text: adult

text: wild type

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK

text: public

text: NA year

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: wild type

text: Homo sapiens

text: Homo sapiens

text: testes

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Cancer Research UK

text: public

text: 60 year

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: wild type

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: title


characteristic: External Id

text: Cancer Research UK

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2-6 month

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: male


text: Cancer Research UK

characteristic: INSDC last update

text: public

text: 16 to 45 year

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: testes

text: Homo sapiens

text: male


text: Cancer Research UK

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 56 year

text: ArrayExpress

text: human

text: adult

text: wild type

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK

text: public

text: 2-6 month

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male

characteristic: sex


text: Streptococcus mutans

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Streptococcus mutans

characteristic: organism

text: Streptococcus mutans


text: Lactobacillus paracasei

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lactobacillus paracasei

text: Lactobacillus paracasei


text: Lactobacillus gasseri

text: SC

characteristic: INSDC last update

text: public

text: ATCC_33323-sc-2012-06-01T13:01:37Z-1430992

text: Lactobacillus gasseri

text: Lactobacillus gasseri


text: Lactobacillus gasseri

text: SC

text: public

text: Lactobacillus gasseri

text: Lactobacillus gasseri


text: Lactobacillus oris

text: SC

text: public

text: Lactobacillus oris

text: Lactobacillus oris


text: Lactobacillus rhamnosus

text: SC

text: public

text: Lactobacillus rhamnosus

text: Lactobacillus rhamnosus


text: Lactobacillus parabuchneri

text: SC

text: public

text: G205_BP_37-sc-2012-06-01T13:02:21Z-1431042

text: Lactobacillus parabuchneri

text: Lactobacillus parabuchneri


text: Lactobacillus vaginalis

text: SC

text: public

text: Lactobacillus vaginalis

text: Lactobacillus vaginalis


text: Lactobacillus salivarius

text: SC

text: public

text: ATCC_11741-sc-2012-06-01T13:01:40Z-1430996

text: Lactobacillus salivarius

text: Lactobacillus salivarius


text: Lactobacillus casei

text: SC

text: public

text: Lactobacillus casei

text: Lactobacillus casei


text: Leuconostoc pseudomesenteroides

text: SC

text: public

text: Leuconostoc pseudomesenteroides

text: Leuconostoc pseudomesenteroides


text: Leuconostoc lactis

text: SC

text: public

text: Leuconostoc lactis

text: Leuconostoc lactis


text: Lactobacillus salivarius

text: SC

text: public

text: Lactobacillus salivarius

text: Lactobacillus salivarius


text: Lactobacillus fermentum

text: SC

text: public

text: Lactobacillus fermentum

text: Lactobacillus fermentum


text: Lactobacillus acidophilus

text: SC

text: public

text: ATCC_4356-sc-2012-06-01T13:01:37Z-1430993

text: Lactobacillus acidophilus

text: Lactobacillus acidophilus


text: Lactobacillus helveticus

text: SC

text: public

text: G205_BL_30-sc-2012-06-01T13:02:22Z-1431043

text: Lactobacillus helveticus

text: Lactobacillus helveticus


text: Lactobacillus rhamnosus

text: SC

text: public

text: ATCC_7469-sc-2012-06-01T13:01:42Z-1430998

text: Lactobacillus rhamnosus

text: Lactobacillus rhamnosus


text: Lactobacillus vaginalis

text: SC

text: public

text: ATCC_49540-sc-2012-06-01T13:01:36Z-1430991

text: Lactobacillus vaginalis

text: Lactobacillus vaginalis


text: Lactobacillus casei

text: SC

text: public

text: ATCC_393-sc-2012-06-01T13:01:41Z-1430997

text: Lactobacillus casei

text: Lactobacillus casei


text: Streptococcus mutans

text: SC

text: public

text: Streptococcus mutans

text: Streptococcus mutans


text: Lactobacillus gasseri

text: SC

text: public

text: Lactobacillus gasseri

text: Lactobacillus gasseri


text: Lactobacillus

text: SC

text: public

text: Lactobacillus

text: Lactobacillus


text: Lactobacillus oris

text: SC

text: public

text: Lactobacillus oris

text: Lactobacillus oris


text: Lactobacillus oris

text: SC

text: public

text: G205_BP_37_3_13-sc-2012-06-01T13:02:24Z-1431045

text: Lactobacillus oris

text: Lactobacillus oris


text: Lactobacillus paracasei

text: SC

text: public

text: Lactobacillus paracasei

text: Lactobacillus paracasei


text: Lactobacillus paracasei

text: SC

text: public

text: ATCC_25598-sc-2012-06-01T13:01:38Z-1430994

text: Lactobacillus paracasei

text: Lactobacillus paracasei


text: Lactobacillus oris

text: SC

text: public

text: ATCC_49062-sc-2012-06-01T13:01:35Z-1430990

text: Lactobacillus oris

text: Lactobacillus oris


text: Leuconostoc pseudomesenteroides

text: SC

text: public

text: Leuconostoc pseudomesenteroides

text: Leuconostoc pseudomesenteroides


text: Lactobacillus rhamnosus

text: SC

text: public

text: Lactobacillus rhamnosus

text: Lactobacillus rhamnosus


text: Lactobacillus oris

text: SC

text: public

text: G205_BL_37_1_27-sc-2012-06-01T13:02:24Z-1431044

text: Lactobacillus oris

text: Lactobacillus oris


text: Lactobacillus fermentum

text: SC

text: public

text: Lactobacillus fermentum

text: Lactobacillus fermentum


text: Lactobacillus fermentum

text: SC

text: public

text: ATCC_14931-sc-2012-06-01T13:01:39Z-1430995

text: Lactobacillus fermentum

text: Lactobacillus fermentum


text: Lactobacillus salivarius

text: SC

text: public

text: Lactobacillus salivarius

text: Lactobacillus salivarius


text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_KO_11739_L_Mm_NNNTTGTNN_20110427_LUmb42_1

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: mouse brain tissue Tissue was dissociated in ice-cold PBS buffer. Material was then subjected to UV-C irradiation (100 mJ/cm2, Stratalinker 2400). Tissue was then precipitated by centrifugation for 1 min at 14000 rpm and snap-frozen on dry ice.

text: Celf4 KO

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: title


text: CRI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-1162:iCLIP_Celf4_Brain_WT_11745_R_Mm_NNNTGGCNN_20110427_LUmb41_4

text: ArrayExpress

text: house mouse

text: WT

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male


text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_WT_11742_L_Mm_NNNGGTTNN_20110427_LUmb42_4

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: WT

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_KO_11743_L_Mm_NNNTGGCNN_20110427_LUmb42_2

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Celf4 KO

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male


text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_WT_11740_R_Mm_NNNTTGTNN_20110427_LUmb41_3

text: ArrayExpress

text: house mouse

characteristic: description

text: WT

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_KO_11739_R_Mm_NNNGGTTNN_20110427_LUmb41_1

text: ArrayExpress

text: house mouse

text: Celf4 KO

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female


text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_KO_11743_R_Mm_NNNGGCGNN_20110427_LUmb41_2

text: ArrayExpress

text: house mouse

text: Celf4 KO

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: male


characteristic: External Id

text: CRI

text: public

text: E-MTAB-1162:iCLIP_Celf4_Brain_WT_11745_L_Mm_NNNGGCGNN_20110427_LUmb42_5

text: ArrayExpress

text: house mouse

text: WT

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

text: SC_MOG5357466-sc-2012-06-11T14:26:08Z-1434574

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_MOG5357458-sc-2012-06-11T14:26:01Z-1434566

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5357459-sc-2012-06-11T14:26:03Z-1434567

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5357465-sc-2012-06-11T14:26:08Z-1434573

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5357460-sc-2012-06-11T14:26:03Z-1434568

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5351620-sc-2012-05-31T09:00:23Z-1426168

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5357462-sc-2012-06-11T14:26:05Z-1434570

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5357463-sc-2012-06-11T14:26:06Z-1434571

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5351618-sc-2012-05-31T09:00:21Z-1426166

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MOG5357461-sc-2012-06-11T14:26:04Z-1434569

text: house mouse

text: Mus musculus

text: Mus musculus


Quench

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: JHI

text: public

text: Quench

text: domesticated barley

text: total RNA sample from 4 day germinating embryo and radicle

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Quench'

characteristic: title


Barke

text: SRA-Webin

text: JHI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Barke

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Barke'


Intro

text: SRA-Webin

text: JHI

text: public

text: Intro

characteristic: Submitter Id

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Intro'


Tocada

characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: JHI

text: public

text: Tocada

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Tocada'


Morex

text: SRA-Webin

text: JHI

text: public

text: Morex

text: domesticated barley

text: total RNA sample from 4 day germinating embryo, radicle & coleoptile

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Morex'


Derkado

text: SRA-Webin

text: JHI

text: public

text: Derkado

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Derkado'


Optic

text: SRA-Webin

text: JHI

text: public

text: Optic

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Optic'


Sergeant

text: SRA-Webin

text: JHI

text: public

text: Sergeant

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Sergeant'


Bowman

text: SRA-Webin

text: JHI

text: public

text: Bowman

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Bowman'


Betzes

text: SRA-Webin

text: JHI

text: public

text: Betzes

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: RNASeq of cultivar 'Betzes'


text: SRA-Webin

text: CRG

text: public

text: human

text: HD-MyZ cells, stably transfected with a Doxycycline-inducible CPEB1 shRNA

text: Homo sapiens

text: Homo sapiens


text: SRA-Webin

text: CRG

text: public

text: human

text: HD-MyZ cells, stably transfected with a Doxycycline-inducible CPEB1 shRNA vector

text: Homo sapiens

text: Homo sapiens


text: Mus Musculus

text: SC

text: public

text: SC_XLINK5371666-sc-2012-07-24T11:35:28Z-1452353

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_XLINK5371668-sc-2012-07-24T11:35:30Z-1452355

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_XLINK5371669-sc-2012-07-24T11:35:31Z-1452356

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_XLINK5371667-sc-2012-07-24T11:35:29Z-1452354

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376383-sc-2012-08-02T07:41:14Z-1458362

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376421-sc-2012-08-02T07:41:51Z-1458400

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376431-sc-2012-08-02T07:42:00Z-1458410

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381660-sc-2012-08-14T11:18:15Z-1464910

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376404-sc-2012-08-02T07:41:35Z-1458383

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376402-sc-2012-08-02T07:41:33Z-1458381

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376408-sc-2012-08-02T07:41:38Z-1458387

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376370-sc-2012-08-02T07:40:58Z-1458349

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377910-sc-2012-08-08T15:06:09Z-1460953

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377916-sc-2012-08-08T15:06:12Z-1460959

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376377-sc-2012-08-02T07:41:06Z-1458356

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376387-sc-2012-08-02T07:41:18Z-1458366

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376371-sc-2012-08-02T07:47:10Z-1458350

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376425-sc-2012-08-02T07:41:55Z-1458404

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376394-sc-2012-08-02T07:41:25Z-1458373

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376427-sc-2012-08-02T07:41:57Z-1458406

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376401-sc-2012-08-02T07:41:32Z-1458380

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376405-sc-2012-08-02T07:41:36Z-1458384

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376420-sc-2012-08-02T07:41:50Z-1458399

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376409-sc-2012-08-02T07:41:40Z-1458388

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377908-sc-2012-08-08T15:06:07Z-1460951

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381656-sc-2012-08-14T11:18:12Z-1464906

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377912-sc-2012-08-08T15:06:10Z-1460955

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377917-sc-2012-08-08T15:06:14Z-1460960

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376430-sc-2012-08-02T07:41:59Z-1458409

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376416-sc-2012-08-02T07:41:47Z-1458395

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376395-sc-2012-08-02T07:41:26Z-1458374

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376380-sc-2012-08-02T07:41:10Z-1458359

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377909-sc-2012-08-08T15:06:08Z-1460952

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376391-sc-2012-08-02T07:41:22Z-1458370

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376386-sc-2012-08-02T07:41:17Z-1458365

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376376-sc-2012-08-02T07:41:05Z-1458355

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376400-sc-2012-08-02T07:41:31Z-1458379

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376428-sc-2012-08-02T07:41:57Z-1458407

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376379-sc-2012-08-02T07:41:09Z-1458358

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376419-sc-2012-08-02T07:41:49Z-1458398

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376410-sc-2012-08-02T07:41:41Z-1458389

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376396-sc-2012-08-02T07:41:27Z-1458375

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376399-sc-2012-08-02T07:41:30Z-1458378

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376415-sc-2012-08-02T07:41:45Z-1458394

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376406-sc-2012-08-02T07:41:37Z-1458385

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381652-sc-2012-08-14T11:18:08Z-1464902

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376411-sc-2012-08-02T07:41:42Z-1458390

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381650-sc-2012-08-14T11:18:07Z-1464900

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377914-sc-2012-08-08T15:06:11Z-1460957

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377906-sc-2012-08-08T15:06:05Z-1460949

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376372-sc-2012-08-02T07:47:11Z-1458351

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376413-sc-2012-08-02T07:41:44Z-1458392

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376374-sc-2012-08-02T07:47:12Z-1458353

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381654-sc-2012-08-14T11:18:10Z-1464904

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376407-sc-2012-08-02T07:41:38Z-1458386

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381657-sc-2012-08-14T11:18:13Z-1464907

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376418-sc-2012-08-02T07:41:49Z-1458397

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376384-sc-2012-08-02T07:41:15Z-1458363

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376389-sc-2012-08-02T07:41:20Z-1458368

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376378-sc-2012-08-02T07:41:08Z-1458357

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MHT5377915-sc-2012-08-08T15:06:12Z-1460958

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376429-sc-2012-08-02T07:41:58Z-1458408

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376393-sc-2012-08-02T07:41:24Z-1458372

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376388-sc-2012-08-02T07:41:19Z-1458367

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5376398-sc-2012-08-02T07:41:29Z-1458377

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_MHT5381653-sc-2012-08-14T11:18:09Z-1464903

text: house mouse

text: Mus musculus

text: Mus musculus


text: Schizosaccharomyces pombe

text: SC

text: public

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: Schizosaccharomyces pombe

text: SC

text: public

text: Mock_150-sc-2012-08-06T11:51:32Z-1460788

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: Schizosaccharomyces pombe

text: SC

text: public

text: Mock_120-sc-2012-08-06T11:51:31Z-1460787

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: Schizosaccharomyces pombe

text: SC

text: public

text: Main_Parental-sc-2012-08-06T11:51:19Z-1460775

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: sample description

text: Plasmodium falciparum


text: male

characteristic: ArrayExpress-Sex

text: Mus muscles

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA from cultured cells

text: Mus musculus


text: male

text: Mus muscles

text: SC

text: public

text: 4_14_PigB-sc-2012-09-05T11:20:47Z-1476310

text: house mouse

text: Mus musculus

text: DNA from cultured cells

text: Mus musculus


text: male

text: Mus muscles

text: SC

text: public

text: 4_17_PigU-sc-2012-09-05T11:20:48Z-1476312

text: house mouse

text: Mus musculus

text: DNA from cultured cells

text: Mus musculus


text: Plasmodium berghei

text: SC

text: public

text: Rec000017_wt_pool1-sc-2012-09-11T15:36:07Z-1478042

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Plasmodium berghei

text: SC

text: public

text: Rec000018_gw_pool3-sc-2012-09-11T15:38:36Z-1478044

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Plasmodium berghei

text: SC

text: public

text: Rec000017_gw_pool2-sc-2012-09-11T15:36:08Z-1478043

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309950-sc-2012-08-24T13:42:20Z-1376524

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309960-sc-2012-08-24T13:42:32Z-1376544

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309956-sc-2012-08-24T13:42:28Z-1376536

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309951-sc-2012-08-24T13:42:21Z-1376526

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309949-sc-2012-08-24T13:42:19Z-1376522

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309959-sc-2012-08-24T13:42:30Z-1376542

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309945-sc-2012-08-24T13:42:14Z-1376513

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309963-sc-2012-08-24T13:42:36Z-1376550

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309944-sc-2012-08-24T13:42:12Z-1376511

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309943-sc-2012-08-24T13:42:11Z-1376510

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309952-sc-2012-08-24T13:42:22Z-1376528

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309948-sc-2012-08-24T13:42:18Z-1376520

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309961-sc-2012-08-24T13:42:34Z-1376546

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309957-sc-2012-08-24T13:42:29Z-1376538

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309958-sc-2012-08-24T13:42:30Z-1376540

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309953-sc-2012-08-24T13:42:25Z-1376533

text: human

text: Homo sapiens

text: Homo sapiens


text: SRA-Webin

text: QMUL

text: public

characteristic: bio material

text: Richard Buggs

characteristic: collected by

text: alpine birch

text: Scotland

characteristic: geographic location (country and/or sea)

text: Richard Buggs

characteristic: identified by

text: 57.230171, -4.754931

characteristic: lat lon

text: Betula nana

text: Betula nana

text: Betula nana WGS


characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: External Id

text: QMUL

characteristic: INSDC center name

text: public

text: ENA default sample checklist

text: downy birch

text: Betula pubescens

characteristic: organism

text: Betula pubescens

text: downy birch


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: QMUL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: alpine birch

characteristic: common name

text: Betula nana

text: Betula nana

text: BetulaRAD


text: Geuvadis

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: For more information about the populations, ELSI, etc., see http://www.1000genomes.org/about#ProjectSamples and http://ccr.coriell.org/Default.aspx. EVB transformed lymphoblastoid cell lines (LCLs) from Coriell Cell Repositories (GBR, FIN, TSI) and University of Geneva (CEU, YRI) were shipped to ECACC (European COllection of Cell Cultures) as live cultures (06/2011 - 09/2011), in batches of ~ 30 samples from Coriell (GBR/FIN/TSI more or less randomized) and 2 x ~90 samples (by population) from Geneva. In ECACC, these cell lines were cultures to approximately 1.2 x 10e8 cells (06/2011-10/2011). These cultures were split to produce 8 x cell banks of the samples, and a snap frozen pellet of 2 x 10e7 cells from a proliferating culture. The cell pellets were shipped from ECACC to University of Geneva in three batches, the first batch consisting of CEU/GBR/FIN/TSI samples, and the second and third batch with YRI and some CEU samples. Total RNA was extracted from cell pellets using the TRIzol Reagent (Ambion). The pellets had been frozen at ECACC without any additives like RNAlater or Trizol. In Geneva they were thawed, 1mL of trizol was added in each sample, and the samples were transferred to eppendorf tubes. The rest of the protocol followed the manufacturer's guidelines. No DNAse treatment was done to the RNA samples. The RNA quality was assessed by Agilent Bioanalyzer RNA 6000 Nano Kit according to the manufacturer's instructions. The sample information includes a visual inspection of RNA quality (degradation), in the scale 0, 0.5, 1. RNA quantity was measured by Qubit 2.0 (Invitrogen) using the RNA Broad range kit according to the manufacturer's instructions.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: FIN

characteristic: population

text: Homo sapiens

text: lymphoblastoid cell line

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Geuvadis

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: GBR

text: Homo sapiens

text: lymphoblastoid cell line


characteristic: ENA-LAST-UPDATE

text: Geuvadis

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: CEU

text: Homo sapiens

text: lymphoblastoid cell line


characteristic: External Id

text: Geuvadis

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: TSI

text: Homo sapiens

text: lymphoblastoid cell line


text: Geuvadis

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: YRI

text: Homo sapiens

text: lymphoblastoid cell line


text: SRA-Webin

text: NCGR

text: public

text: Japanese rice

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group


text: The Babraham Institute

text: public

tag: Namespace:The Babraham Institute

text: ArrayExpress

text: house mouse

text: Protocols: 3C material was generated using BglII as a restriction enzyme. The bait fragment (Chr7: 150474507-150484686, NCBIM37) encompasses the whole KvDMR1, and was enriched by streptavidin pulldown of a biotinylated primer extension product using primer KvDMR-4C-ext as described in Schoenfelder et al., 2010. The 4-cutter Csp6I was used to cut within the prey region and create uniform ends for adapter ligation. A SNP at Chr7:150474522 (B6: T, SD7: C) was used to discriminate between alleles.

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: maternal

characteristic: phenotype

text: Mus musculus


text: The Babraham Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: placenta

text: maternal

text: Mus musculus


text: The Babraham Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: placenta

text: paternal

text: Mus musculus


text: The Babraham Institute

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: liver

text: paternal

text: Mus musculus


text: IGR

text: public

text: UMR 985 INSERM, Institut Gustave Roussy, 94805 Villejuif, France

characteristic: biosource provider

text: ArrayExpress

text: tumor

characteristic: cell type

text: human

text: Protocols: AMKL cells obtained directly from immunodeficient animals or following purification by flow cytometry were cultured in RPMI1640 medium supplemented with 20% FBS (Gibco), penicilline-streptomycine (Gibco), and human SCF, IL3, IL6, IL11, TPO and EPO (10ng/ml each, Peprotech). RNA extraction.

text: Megakaryoblastic leukemia

characteristic: disease state

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK

characteristic: INSDC center name

text: public

text: frozen

characteristic: bio source type

text: ATCC

characteristic: biosourceprovider

text: ArrayExpress

characteristic: cell line

text: breast epithelial

text: human

text: Protocols: MCF-7 cells were grown in DMEM containing 10% heat-inactivated FBS, 2 mM L glutamine, 50 U/ml penicillin and 50 _g/ml streptomycin at 37oC with 5% CO2. To hormone deprive the cells, cells were grown in steroid-depleted (phenol red free DMEM containing 5% heat-inactivated CDT FBS, 2 mM L glutamine, 50 U/ml penicillin and 50 _g/ml streptomycin) medium for three days and then treated with vehicle (ethanol), 100 nM 17b-Estradiol (Sigma E2758) (ER ChIP) or 60 mins (PolII ChIP). siRNA experiments were performed using Lipofectamine2000 (Invitrogen, CA, USA) 25uL was used in a total of 5mls of Optimem (Invitrogen, CA, USA) together with 50nM of siRNA for 6 hours. The sequence of the siRNA was: siTLE1 (D-015528-17): GGAAAAUGGAAUCGACAAA. After 48h of transfection, cells were treated with control ethanol vehicle or 17b-Estradiol.

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex


Throat

text: TGAC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Throat

characteristic: Submitter Id

text: straw-colored fruit bat

characteristic: common name

text: Throat swab sample collected from approximately 20 live individuals

text: Eidolon helvum

text: Eidolon helvum


Lung

text: TGAC

text: public

text: Lung

text: straw-colored fruit bat

text: Lung tissue sample collected post-mortem from 5 individuals

characteristic: description

text: Eidolon helvum

text: Eidolon helvum


Urine

text: TGAC

text: public

text: Urine

text: straw-colored fruit bat

text: Urine sample collected from multiple individuals via capture sheet under roosting area

text: Eidolon helvum

text: Eidolon helvum


text: public

tag: Namespace:University of Helsinki, Genome-Scale Biology Program

characteristic: batch

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: Protocols: Drosophila S2 cells were cultured at controlled temperature (+23.5C; Binder KB cooling incubator) in Invitrogen SFM medium supplemented with 10% fetal bovine serum, 10% IMS (insect medium supplement, Sigma), 2 mM glutamine, and antibiotics. For transfections in 6-well plates, 1.000.000 S2 cells were seeded per well in 2 ml medium. The following day, cells were transfected with dsRNA according to manufacturers (Qiagen) instructions, using 5ul Effectene, 8.8 ul Enhancer, 1100 ng dsRNA. RNA extraction, was performed with Qiagen RNeasy kits according to manufacturers instruction, including the additional DNase treatment.

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Helsinki, Genome-Scale Biology Program

text: public

text: ArrayExpress

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster


text: MRC-LMB

characteristic: INSDC center name

text: public

text: 18 day

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: Tissue was dissociated in ice-cold PBS buffer. Material was then subjected to UV-C irradiation. Cells were then precipitated by centrifugation for 1 min at 14000 rpm and snap-frozen on dry ice. iCLIP protocol was followed to isolate RNA bound to FUS, TDP-43 or U2AF65 protein and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction, and are specified below for each sequencing run. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina pair-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3

text: embryo

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum


text: Plasmodium vivax

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: malaria parasite P. vivax

text: Plasmodium vivax

text: Plasmodium vivax


text: Anopheles gambiae

text: SC

text: public

characteristic: Submitter Id

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


text: SC

text: public

text: Streptococcus_pneumoniae-sc-2010-05-07-33997

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: strain


text: Globodera pallida

text: Lindley

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Globodera_pallida-sc-2012-12-05T11:59:08Z-1521561

text: Globodera pallida

text: Globodera pallida

text: Lindley


text: Globodera pallida

text: Lindley

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Globodera_pallida-sc-2012-12-05T12:12:05Z-1521562

text: Globodera pallida

text: Globodera pallida

text: Lindley


text: Homo sapiens

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: WB_2786_05_TotalR_27412-sc-2012-07-26T12:11:17Z-1457210

text: human

text: Homo sapiens

text: SISPA cDNA

characteristic: sample description

text: Homo sapiens


text: Homo sapiens

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: WB_802_05_TotalR_27412-sc-2012-07-26T12:11:18Z-1457211

text: human

text: Homo sapiens

text: SISPA cDNA

text: Homo sapiens


text: Canis lupus familiaris

text: SC

text: public

text: NB_07_CytoD_18712-sc-2012-07-26T12:11:45Z-1457243

text: dog

text: Canis lupus familiaris

text: SISPA cDNA

text: Canis lupus familiaris


text: Canis lupus familiaris

text: SC

text: public

text: NB_08_CytoD_18712-sc-2012-07-26T12:11:46Z-1457244

text: dog

text: Canis lupus familiaris

text: SISPA cDNA

text: Canis lupus familiaris


text: Canis lupus familiaris

text: SC

text: public

text: NB_08_TotalR_18712-sc-2012-07-26T12:11:49Z-1457248

text: dog

text: Canis lupus familiaris

text: SISPA cDNA

text: Canis lupus familiaris


text: Canis lupus familiaris

text: SC

text: public

text: NB_07_TotalR_18712-sc-2012-07-26T12:11:49Z-1457247

text: dog

text: Canis lupus familiaris

text: SISPA cDNA

text: Canis lupus familiaris


text: Homo sapiens

text: SC

text: public

text: WB_1478_06_TotalR_27412-sc-2012-07-26T12:11:16Z-1457209

text: human

text: Homo sapiens

text: SISPA cDNA

text: Homo sapiens


text: Canis lupus familiaris

text: SC

text: public

text: NB_10_CytoD_18712-sc-2012-07-26T12:11:48Z-1457246

text: dog

text: Canis lupus familiaris

text: SISPA cDNA

text: Canis lupus familiaris


text: Canis lupus familiaris

text: SC

text: public

text: NB_09_CytoD_18712-sc-2012-07-26T12:11:47Z-1457245

text: dog

text: Canis lupus familiaris

text: SISPA cDNA

text: Canis lupus familiaris


characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

text: Compliant

text: Finland, Southern Finland

text: UH-FS

text: public

text: 5 - 10

characteristic: amount or size of sample collected

text: none (control)

characteristic: chemical administration

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: elevation

text: miscellaneous natural or artificial environment

characteristic: enviornmental package

text: forest

characteristic: environment (biome)

text: wood

characteristic: environment (feature)

text: wood stump in forest

characteristic: environment (material)

text: time

characteristic: experimental factor

text: 60 N, 23 E

characteristic: investigation type

text: Tree species of stump:Norway Spruce

characteristic: miscellaneous parameter

text: Time elapsed since felling: 6 years

text: Genomic DNA was extracted from 500 mg of the homogenized wood sample using the ‘PowerSoilTM DNA Isolation Kit’ (MoBio Laboratories, Carlsbad, CA, USA).

characteristic: nucleic acid extraction

text: ecological metagenomes

text: stem base (dead tree stump)

characteristic: plant body site

text: Pg effect

characteristic: project name

text: five 1x1x2 cm cores, pooled

characteristic: sample collection device or method

characteristic: sample weight for DNA extraction

text: ecological metagenomes

text: Pyrosequencing

characteristic: sequencing method

text: pyrosequencing

text: 16S rRNA

characteristic: target gene

text: V1-V3 regions

characteristic: target subfragment

text: Control sample 1 from site LO

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Compliant

text: Finland, Southern Finland

text: UH-FS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 5 - 10

characteristic: amount or size of sample collected

text: none (control)

characteristic: chemical administration

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: elevation

text: forest

text: wood

text: wood stump in forest

text: time

text: 60 N, 28 E

text: Tree species of stump:Norway Spruce

text: Time elapsed since felling: 13 years

text: ecological metagenomes

characteristic: organism

text: stem base (dead tree stump)

text: Pg effect

text: five 1x1x2 cm cores, pooled

text: ecological metagenomes

text: Pyrosequencing

text: pyrosequencing

text: 16S rRNA

text: V1-V3 regions

text: Control sample 3 from site S


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

text: Compliant

text: Finland, Southern Finland

text: UH-FS

text: public

text: 5 - 10

text: none (control)

characteristic: enviornmental package

text: forest

characteristic: environment (biome)

text: wood

characteristic: environment (feature)

text: wood stump in forest

characteristic: environment (material)

text: time

characteristic: experimental factor

text: 60 N, 24 E

characteristic: investigation type

text: Tree species of stump:Norway Spruce

characteristic: miscellaneous parameter

text: Time elapsed since felling: 1 year

characteristic: nucleic acid extraction

text: ecological metagenomes

text: stem base (dead tree stump)

characteristic: plant body site

text: Pg effect

characteristic: project name

text: five 1x1x2 cm cores, pooled

characteristic: sample collection device or method

characteristic: sample weight for DNA extraction

text: ecological metagenomes

text: Pyrosequencing

characteristic: sequencing method

text: pyrosequencing

text: 16S rRNA

characteristic: target gene

text: V1-V3 regions

characteristic: target subfragment

text: Control sample 2 from site LI

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Compliant

text: Finland, Southern Finland

text: UH-FS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 5 - 10

characteristic: amount or size of sample collected

text: none (control)

characteristic: chemical administration

characteristic: collection date

characteristic: depth

characteristic: description

characteristic: elevation

text: forest

text: wood

text: wood stump in forest

text: time

text: 60 N, 23 E

text: Tree species of stump:Norway Spruce

text: Time elapsed since felling: 6 years

text: ecological metagenomes

characteristic: organism

text: stem base (dead tree stump)

text: Pg effect

text: five 1x1x2 cm cores, pooled

text: ecological metagenomes

text: Pyrosequencing

text: pyrosequencing

text: 16S rRNA

text: V1-V3 regions

text: Control sample 3 from site LO