text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


status: PUBLIC

text: 25903077; 33659219

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus

type: AMR curated data - CABBAGE

value: gentamicin

value: CLSI

value: disk diffusion

value: resistant

value: Staphylococcus aureus

value: trimethoprim-sulfamethoxazole

value: ciprofloxacin

value: clindamycin

value: erythromycin

value: tetracycline


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

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text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus

value: susceptible


characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

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characteristic: External Id

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characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

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characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

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text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


text: 25903077; 33659219

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SGP

characteristic: SRA accession

text: Singapore

text: Staphylococcus

text: Singapore

text: Homo sapiens

text: Not known

text: Not known

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

text: SC

text: public

text: SGP

characteristic: Submitter Id

characteristic: collection date

text: Singapore

text: Staphylococcus

characteristic: genus

text: Singapore

text: Homo sapiens

characteristic: host

text: Not known

text: Not known

characteristic: isolate

text: Not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

characteristic: pmid

text: Staphylococcus aureus

text: Not known

text: Staphylococcus aureus


text: 25903077; 33659219

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SGP

text: Singapore

characteristic: country

text: Staphylococcus

text: Singapore

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: Not known

characteristic: host status

text: Not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Not known

characteristic: specific host

characteristic: strain

text: Staphylococcus aureus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 287

characteristic: sample description

text: Saccharomyces cerevisiae


text: SC

text: public

characteristic: Submitter Id

text: baker's yeast

text: Saccharomyces cerevisiae

characteristic: organism

text: Mat a, LYS+ segregant 370

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 218

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 221

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 238

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 303

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 358

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 308

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 240

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 271

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 307

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 342

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 344

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 288

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 333

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 380

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 365

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 382

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 255

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 328

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 216

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 254

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat alpha, URA+ segregant 250

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 318

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 352

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 337

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Mat a, LYS+ segregant 375

text: Saccharomyces cerevisiae


text: SC

text: public

text: Ryukyu mouse

text: Mus caroli

text: Mus caroli

text: Mus caroli


text: SC

text: public

text: Taylorella equigenitalis

text: Taylorella equigenitalis


name: E-MTAB-691:PEO23 ovarian cancer cell line

text: CRI

text: public

text: ArrayExpress

characteristic: broker name

text: Relapse

characteristic: clinical history

text: Platinum resistant

characteristic: clinical information

text: human

text: Protocols: Cell lines were grown in RPMI-1640 + 10% fetal bovine serum + 1x penicillin/streptomycin (all Invitrogen, Paisley, UK) at 37 1C, 5% CO2. RNA was extracted in triplicate from confluent T75s using TRIzol reagent (Invitrogen). Extracted RNA was pooled and DNase treated using the DNAfree kit (Ambion). mRNA was then enriched by binding to oligo dT beads using the uMACS system (Miltenyi Biotech). First and second strand cDNA synthesis were carried out using the Superscript double stranded cDNA synthesis kit (Invitrogen). Half of each cDNA reaction was used for sonication and library preparation.

characteristic: description

text: ovarian carcinoma

characteristic: disease state

text: Patient 3

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: PEO23 ovarian cancer cell line

type: has member


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CME

text: public

text: [ISO 8601 compliant]

characteristic: Sample collection_date

text: dental root canal infections

characteristic: Teeth samples

text: This study performed barcoded multiplex pyrosequencing with a 454 FLX instrument to compare the microbiota of dental root canal infections associated with acute (abscesses) or chronic apical periodontitis. Analysis of samples from 9 acute and 8 chronic infections yielded partial 16S rRNA gene sequences that were taxonomically classified.

text: human metagenome

text: human metagenome

text: QIAamp DNA Blood Maxi Kit

characteristic: silica-gel membrane extraction


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: strain


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: horse

characteristic: common name

text: Nimblegen Sequence Capture of Genomic Equus cabbalus (Unaffected Individual) DNA. Capture targets designed on horse genome - Chromosome 26 between genomic positions: 28,942,655-31,942,655bp.

text: Equus caballus

characteristic: organism

text: Unaffected Individual

characteristic: origin

characteristic: sample

text: Equus caballus


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Paratyphi A


characteristic: ENA-LAST-UPDATE

text: SC

text: public


text: SC

text: public


text: SC

text: public

text: A63_3___Banker_Type_6_-sc-2010-05-07-6291


text: SC

text: public

text: Mycobacterium marinum

text: Mycobacterium marinum

text: M-VU


text: SC

text: public

text: Mycobacterium marinum

text: Mycobacterium marinum

text: M-USA


text: SC

text: public

text: Mycobacterium microti

text: Mycobacterium microti


text: SC

text: public

text: Mycobacterium microti

text: Mycobacterium microti

text: MausIV


text: SC

text: public

text: Mycobacterium microti

text: Mycobacterium microti

text: MausIII


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: collection date

text: One of ten isolates from urine sample

characteristic: description

text: Thailand

characteristic: geographic location (country and/or sea)

text: disease: melioidosis

characteristic: host health state

text: urine

characteristic: isolation source

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: not known

characteristic: serovar

text: human

characteristic: specific host

text: Burkholderia pseudomallei

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: One of ten isolates from right leg pustule

text: Thailand

text: disease: melioidosis

text: pus

text: Burkholderia pseudomallei

characteristic: organism

text: Burkholderia pseudomallei

text: not known

text: human

text: Burkholderia pseudomallei


text: SC

text: public

characteristic: collection date

text: One of ten isolates from tracheal suction

characteristic: description

text: Thailand

characteristic: geographic location (country and/or sea)

text: disease: melioidosis

characteristic: host health state

text: trachea

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: not known

text: human

text: Burkholderia pseudomallei


text: SC

text: public

text: One of ten isolates from forehead pustule

text: Thailand

text: disease: melioidosis

text: pus

characteristic: isolation source

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: not known

characteristic: serovar

text: human

characteristic: specific host

text: Burkholderia pseudomallei

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: One of ten isolates from blood sample

text: Thailand

text: disease: melioidosis

text: blood

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: not known

text: human

text: Burkholderia pseudomallei


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: One of ten isolates from left leg pustule

text: Thailand

text: disease: melioidosis

text: pus

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: not known

text: human

characteristic: strain

text: Burkholderia pseudomallei


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: One of ten isolates from thigh wound

text: Thailand

text: disease: melioidosis

text: wound

text: Burkholderia pseudomallei

characteristic: organism

text: Burkholderia pseudomallei

text: not known

text: human

text: Burkholderia pseudomallei


text: SC

text: public

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

text: Diseased

characteristic: host health state

text: Streptococcus pneumoniae

characteristic: pubmed id

text: Streptococcus pneumoniae

text: Homo sapiens


text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: SC

text: public

characteristic: anonymized name

text: Malawi

characteristic: country

text: Malawi

text: Diseased

text: Disease

characteristic: host status

text: CSF

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Malawi

text: Diseased

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens


text: Streptococcus pneumoniae

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

text: Diseased

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: strain


text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: anonymized name

text: Malawi

characteristic: country

text: Disease

characteristic: host status

text: CSF

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Malawi

text: Disease

text: Blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human

characteristic: specific host

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Malawi

text: Malawi

text: Diseased

characteristic: host health state

text: Disease

text: Blood

text: Streptococcus pneumoniae

characteristic: pubmed id

text: Streptococcus pneumoniae

text: Human


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Malawi

characteristic: country

text: Malawi

characteristic: geographic location (country and/or sea)

text: Healthy

text: Disease

text: Blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: strain


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Salmonella enterica subsp. enterica serovar Gallinarum


characteristic: ENA first public

characteristic: ENA last update

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Uruguay

text: not collected

characteristic: host status

text: Faeces

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

characteristic: serovar

text: human

characteristic: specific host

text: enterica

characteristic: sub species

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Uruguay

characteristic: country

text: disease

text: Blood

text: Enteritidis

text: human

text: enterica


characteristic: ENA first public

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Uruguay

text: not collected

text: Food

characteristic: organism

text: Enteritidis

text: Environmental

characteristic: strain

text: enterica


characteristic: ENA last update

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Uruguay

text: disease

characteristic: host status

text: Faeces

characteristic: isolation source

text: Enteritidis

characteristic: serovar

text: human

characteristic: specific host

text: enterica


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica serovar Dublin


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Pullorum


text: SC

text: public

text: Leishmania donovani donovani

text: BHU-568 clone 1

characteristic: sample description

text: Leishmania donovani donovani


characteristic: External Id

text: SC

text: public

text: MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-10027

text: Leishmania donovani donovani

text: BPK043/0 clone 2

text: Leishmania donovani donovani


text: SC

characteristic: INSDC center name

text: public

text: MHOM_NP_02_BPK_173_0_cl3-sc-2010-05-07-10081

text: Leishmania donovani donovani

text: BPK173/0 clone 3 under SSG pressure

text: Leishmania donovani donovani


text: SC

characteristic: INSDC first public

text: public

text: MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-9430

text: Leishmania donovani donovani

text: BPK282/0 clone 4 long term in vitro stability (short HOMEM)

text: Leishmania donovani donovani


text: SC

characteristic: INSDC last update

text: public

text: MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-9431

text: Leishmania donovani donovani

text: BPK282/0 clone 4 long term in vitro stability (long HOMEM)

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_03_BPK_173_1_cl9-sc-2010-05-07-9428

text: Leishmania donovani donovani

characteristic: organism

text: BPK173/1 clone 9

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-9429

text: Leishmania donovani donovani

text: BPK282/0 clone 4 long term in vitro stability (Tobies)

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP____BPK_206_0_cl10-sc-2010-05-07-6705

text: Leishmania donovani donovani

text: BPK206/0 clone 10

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK085_0_cl8-sc-2010-05-07-5748

text: Leishmania donovani donovani

text: BPK085/0 clone 8

text: Leishmania donovani donovani


text: SC

text: public

text: Leishmania donovani donovani

text: Leishmania donovani donovani


text: SC

text: public

text: Leishmania donovani donovani

text: BKP007/0 cl7

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_294_0_cl1-sc-2010-05-07-5744

text: Leishmania donovani donovani

text: BPK294/0 clone1

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-30253

text: Leishmania donovani donovani

text: BPK282/0 clone 4 stability animal

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_03_BPK_275_0_cl18-sc-2010-05-07-5742

text: Leishmania donovani donovani

text: BPK275/0 clone 18

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_173_0_cl3-sc-2010-05-07-5740

text: Leishmania donovani donovani

text: BPK173/0 clone 3

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_03_BPK_173_1_cl9-sc-2010-05-07-5741

text: Leishmania donovani donovani

text: BPK173/1 clone 9

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_282_0_cl4-sc-2010-05-07-1992

text: Leishmania donovani donovani

text: BPK282/0 clone 4

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_026_0_cl5_-sc-2010-05-07-11123

text: Leishmania donovani donovani

text: BPK026/0 clone 5

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_173_0_cl3-sc-2010-09-16-896085

text: Leishmania donovani donovani

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_173_0_cl3-sc-2010-09-16-896084

text: Leishmania donovani donovani

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_043_0_cl2-sc-2010-05-07-8431

text: Leishmania donovani donovani

text: BPK043/0 clone 2

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_067_0_cl12-sc-2010-05-07-9424

text: Leishmania donovani donovani

text: BPK067/0 clone 12

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02_BPK_080_0_cl1-sc-2010-05-07-9425

text: Leishmania donovani donovani

text: BPK080/0 clone 1

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_03_BPK_275_1_cl3-sc-2010-05-07-9426

text: Leishmania donovani donovani

text: BPK275/1 clone 3

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_03_BPK_288_0_cl7-sc-2010-05-07-9427

text: Leishmania donovani donovani

text: BPK288/0 clone 7

text: Leishmania donovani donovani


text: SC

text: public

text: MHOM_NP_02__BPK_282_0_cl4-sc-2010-05-14-45786

text: Leishmania donovani donovani

text: BPK282/0 clone 4 long term in vitro stability (long HOMEM)

text: Leishmania donovani donovani


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: strain


text: SC

text: public

text: Plasmodium knowlesi

text: Plasmodium knowlesi

text: Nuri


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Virchow


text: SC

text: public

text: PB_HPRT_28___mPBase-sc-2010-07-16-241621

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio

text: TL


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: RUS

text: Mycobacterium

characteristic: genus

text: UK

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Mycobacterium tuberculosis

characteristic: pmid

text: Mycobacterium tuberculosis

characteristic: scientific name

text: Mycobacterium tuberculosis

text: Human

characteristic: tax id

value: streptomycin

value: Mycobacterium tuberculosis

value: ethambutol

value: rifampin

value: isoniazid

value: pyrazinamide


text: SC

text: public

characteristic: INSDC status

text: RUS

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: UK

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: specific host


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: SC

characteristic: INSDC last update

text: public

text: Russia

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: RUS

text: Mycobacterium

characteristic: genus

text: Russia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

characteristic: host

text: Mycobacterium tuberculosis

characteristic: pmid

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: scientific name

text: Mycobacterium tuberculosis

text: Human

characteristic: tax id


text: SC

text: public

characteristic: INSDC status

text: RUS

characteristic: SRA accession

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: RUS

characteristic: Submitter Id

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: specific host


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: RUS

text: Mycobacterium

text: UK

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: UK

characteristic: geographic location (country and/or sea)

text: Mycobacterium africanum

text: Mycobacterium tuberculosis

text: Mycobacterium africanum

text: Human


text: SC

text: public

text: RUS

text: Estonia

characteristic: country

text: Mycobacterium

characteristic: genus

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


text: SC

text: public

text: RUS

text: Mycobacterium

text: UK

text: Homo sapiens

characteristic: host

text: Mycobacterium tuberculosis

characteristic: pmid

text: Mycobacterium tuberculosis

characteristic: scientific name

text: Mycobacterium tuberculosis

text: Human

characteristic: tax id


text: SC

text: public

characteristic: INSDC status

text: RUS

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: specific host


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: UK

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: strain


text: SC

text: public

text: RUS

text: Mycobacterium

characteristic: genus

text: Russia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: Russia

text: Mycobacterium tuberculosis

characteristic: pmid

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: title


text: SC

text: public

text: UK

text: Mycobacterium bovis

text: Mycobacterium tuberculosis

characteristic: scientific name

text: Mycobacterium bovis

text: Human

characteristic: tax id


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: SC

text: public

characteristic: Submitter Id

text: Russia

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: specific host


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

characteristic: host

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: RUS

text: Mycobacterium

text: UK

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Mycobacterium tuberculosis

characteristic: organism

text: M. tuberculosis M08_14521

characteristic: sample description

text: Mycobacterium tuberculosis

characteristic: strain


text: SC

text: public

text: RUS

text: Mycobacterium

characteristic: genus

text: Russia

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Mycobacterium tuberculosis

characteristic: pmid

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

characteristic: INSDC status

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: scientific name

text: Mycobacterium tuberculosis

text: Human

characteristic: tax id


text: SC

text: public

text: RUS

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: UK

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: specific host


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: RUS

text: Mycobacterium

text: UK

text: Homo sapiens

characteristic: host

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: Mycobacterium tuberculosis

text: M. tuberculosis M08_14350

characteristic: sample description

text: Mycobacterium tuberculosis

characteristic: strain


text: SC

text: public

text: UK

characteristic: geographic location (country and/or sea)

text: Mycobacterium tuberculosis

characteristic: pmid

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

characteristic: INSDC status

text: Mycobacterium tuberculosis

text: M. tuberculosis M08_14556

text: Mycobacterium tuberculosis


text: SC

text: public

text: Mycobacterium tuberculosis

text: M. tuberculosis M08_14443

text: Mycobacterium tuberculosis


text: SC

text: public

text: Mycobacterium tuberculosis

text: M. tuberculosis M08_14361

text: Mycobacterium tuberculosis


text: SC

text: public

text: Mycobacterium tuberculosis

text: M. tuberculosis M08_14569

text: Mycobacterium tuberculosis


text: SC

text: public

text: RUS

text: Mycobacterium

characteristic: genus

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: scientific name

text: Mycobacterium tuberculosis

text: Human

characteristic: tax id


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: RUS

text: Mycobacterium

text: Russia

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

characteristic: specific host


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: StrainOrLine

text: 8 weeks

characteristic: age

characteristic: bio source type

text: The Scripps Research Institute, La Jolla, California, USA

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: Mixed

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: 3 grouped housed male and female mice (C58BL\6J) were euthanized at 8 weeks their vomernasal organs were dissected and the RNA was extracted immediately and stored in RNAlater. RNA was extracted using the RNAeasy kit using a disposable Rance free plastic grinder to homogenize the sample according to manufactor's instructions. All RNA was subsequently quantified with a UV-Vis spectrophotometer and visualized for quality using RNA integrity analysis.

characteristic: description

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: African malaria mosquito

text: Anopheles gambiae

characteristic: organism

text: Anopheles gambiae


text: Anopheles gambiae

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


BSFCR

text: KHUBIO

text: public

text: BSFCR

text: 1.0g BSF's gut

characteristic: amount or size of sample collected

text: gut

characteristic: body site

characteristic: collection date

text: 16S rRNA sequences of Black Soldier Fly (BSF) gut fed cooked rice, to study the abundance and phylogenetic diversity of the intestinal bacterial community in the food waste reducing larvae of Hermetia illucens.

characteristic: description

text: Cooked Rice

characteristic: diet

text: insecta-associated-habitat

characteristic: environment

text: host-associated

characteristic: environmental package

text: Diet

characteristic: experimental factor

text: South Korea

characteristic: geographic location (country)

characteristic: geographic location (depth)

text: 37.2760694 126.98395

characteristic: host body temperature

text: Black Soldier Fly

characteristic: host common name

characteristic: host taxid

text: larval

characteristic: life stage

text: ATGACG

characteristic: multiplex identifiers

text: organismal metagenomes

text: initial denaturation : 94degC_5min, denaturation : 94degC_30sec Annealing : 60degC_45sec Extension 72degC_1.5min

characteristic: pcr conditions

text: FWD_NAME: SSU27f; FWD_SEQ: GAGTTTGATCMTGGCTCAG; REV_NAME: 518r; REV_SEQ: WTTACCGCGGCTGCTGG

characteristic: pcr primers

characteristic: sample storage duration

text: freezer

characteristic: sample storage location

characteristic: sample storage temperature

text: organismal metagenomes

text: pyrosequencing

characteristic: sequencing method

text: Hermetia illucens

characteristic: specific host

text: 16S rRNA

characteristic: target gene

characteristic: temperature


BSFFW

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KHUBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BSFFW

characteristic: Submitter Id

text: 1.0g BSF's gut

characteristic: amount or size of sample collected

text: gut

characteristic: body site

characteristic: collection date

text: 16S rRNA sequences of Black Soldier Fly (BSF) gut, fed food waste, to study the abundance and phylogenetic diversity of the intestinal bacterial community in the food waste reducing larvae of Hermetia illucens.

characteristic: description

text: Food Waste

characteristic: diet

text: insecta-associated-habitat

characteristic: environment

text: host-associated

characteristic: environmental package

text: Diet

characteristic: experimental factor

text: South Korea

text: 37.2760694 126.98395

text: Black Soldier Fly

text: larval

text: CTACAC

text: organismal metagenomes

characteristic: organism

text: freezer

text: organismal metagenomes

text: pyrosequencing

text: Hermetia illucens

text: 16S rRNA

characteristic: title


BSFCF

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KHUBIO

text: public

text: BSFCF

text: 1.0g BSF's gut

text: gut

text: 16S rRNA sequences of Black Soldier Fly (BSF) gut fed calf forage, to study the abundance and phylogenetic diversity of the intestinal bacterial community in the food waste reducing larvae of Hermetia illucens.

text: Calf Forage

text: insecta-associated-habitat

text: host-associated

text: Diet

text: South Korea

characteristic: geographic location (country)

characteristic: geographic location (depth)

text: 37.2760694 126.98395

characteristic: host body temperature

text: Black Soldier Fly

characteristic: host common name

characteristic: host taxid

text: larval

characteristic: life stage

text: CATCTG

characteristic: multiplex identifiers

text: organismal metagenomes

characteristic: pcr conditions

characteristic: pcr primers

text: freezer

characteristic: sample storage location

characteristic: sample storage temperature

text: organismal metagenomes

text: pyrosequencing

characteristic: sequencing method

text: Hermetia illucens

characteristic: specific host

text: 16S rRNA

characteristic: target gene

characteristic: temperature


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Peptoclostridium difficile

characteristic: organism

text: Peptoclostridium difficile

characteristic: strain


characteristic: External Id

text: UOKNOR

text: public

text: September 2007

characteristic: Time of sample collection

text: EMG

characteristic: broker name

text: Run Data for bacterial decomposer community in Gigante Fertilization Experimental Plots from September, 2007.

characteristic: description

text: Tropical forest floor

characteristic: habitat

text: 9º 06.13’ N

characteristic: latitude

text: 79º 50.37’ W

characteristic: longitude

text: soil metagenome

text: 5.7 - 6.9

characteristic: ph

text: soil metagenome

text: Leaf litter residuum

characteristic: soil type


mixed-feces-in-freshwater

text: 500 ml

characteristic: Amount of sample collected

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: South Korea: Gwangju, Yeongsan River basin

text: GIST

characteristic: INSDC center name

text: public

text: mixed-feces-in-freshwater

characteristic: collection date

text: DNA obtained from human and animal feces dissolved in freshwater

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: GACACTGTAC

characteristic: multiplex identifier

text: stool DNA extraction kit (Bioneer, South Korea)

characteristic: nucleic acid extraction

text: gut metagenome

text: FW:AACGCTAGCTACAGGCTTAACA RW:CAATATTCCTCACTGCTGCCTCCCGTA

characteristic: pcr primers

text: Bacteroidetes Microbial Source Tracking (MST)

characteristic: project name

text: freeze dried

characteristic: sample material processing

text: gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: mixed-feces-in-freshwater

characteristic: title


Swine-feces

text: 30 individual feces pooled into one and 250mg was used

characteristic: External Id

text: GIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Swine-feces

characteristic: Submitter Id

text: DNA obtained from swine feces

characteristic: description

text: animal-associated habitat

text: feces

text: CAGTAGTCAC

text: organismal metagenomes

characteristic: organism

text: swab

text: organismal metagenomes

text: Pyrosequencing

text: 16S rRNA

text: Swine-feces


Chicken-feces

characteristic: Amount of sample collected

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GIST

characteristic: INSDC center name

text: public

text: Chicken-feces

characteristic: collection date

text: DNA obtained from chicken feces

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: ACAGTCACAC

text: chicken gut metagenome

text: swab

text: chicken gut metagenome

text: Pyrosequencing

text: 16S rRNA

text: Chicken-feces


Goose-feces

text: South Korea: ChangWon, Ju-Nam lake

text: GIST

text: public

text: Goose-feces

text: DNA obtained from geese feces

text: animal-associated habitat

text: feces

text: AGTCACTGAC

characteristic: multiplex identifier

characteristic: nucleic acid extraction

text: organismal metagenomes

characteristic: pcr primers

characteristic: project name

text: swab

characteristic: sample material processing

text: organismal metagenomes

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: Goose-feces


Duck-feces

characteristic: External Id

text: GIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Duck-feces

characteristic: Submitter Id

text: DNA obtained from duck feces

text: animal-associated habitat

text: feces

text: AGACGTCTAC

text: organismal metagenomes

text: swab

text: organismal metagenomes

text: Pyrosequencing

text: 16S rRNA

text: Duck-feces

characteristic: title


Human-feces

characteristic: Amount of sample collected

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GIST

characteristic: INSDC center name

text: public

text: Human-feces

characteristic: collection date

text: DNA obtained from human feces

characteristic: description

text: animal-associated habitat

text: feces

text: ACAGTCACAC

text: human gut metagenome

characteristic: organism

text: swab

text: human gut metagenome

text: Pyrosequencing

text: 16S rRNA

text: Human-feces


Milkcow-feces

text: GIST

text: public

text: Milkcow-feces

text: DNA obtained from dairy cattle feces

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: CACATGTGAC

characteristic: multiplex identifier

characteristic: nucleic acid extraction

text: bovine gut metagenome

characteristic: pcr primers

characteristic: project name

text: swab

characteristic: sample material processing

text: bovine gut metagenome

text: Pyrosequencing

text: 16S rRNA

text: Milkcow-feces


text: 500ml surface water

characteristic: External Id

text: GIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DNA obtained from Human_feces-in-freshwater

text: mammalia-associated habitat

text: freshwater

text: CGTACGATAC

text: human gut metagenome

text: freeze dried

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


Freshwater

text: 500 ml surface water

characteristic: Amount of sample collected

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GIST

characteristic: INSDC center name

text: public

text: Freshwater

characteristic: Submitter Id

characteristic: collection date

text: DNA obtained from freshwater

text: freshwater

text: freshwater

text: CATGCTAGAC

text: freshwater metagenome

text: freeze dried

text: freshwater metagenome

text: Pyrosequencing

text: 16S rRNA

text: Freshwater

characteristic: title


Beefcow-feces

text: GIST

text: public

text: Beefcow-feces

text: DNA obtained from beef cattle feces

characteristic: description

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: ATCGTACGAC

characteristic: multiplex identifier

characteristic: nucleic acid extraction

text: bovine gut metagenome

characteristic: organism

characteristic: pcr primers

text: swab

text: bovine gut metagenome

text: Pyrosequencing

text: 16S rRNA

text: Beefcow-feces


characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

text: Haemonchus contortus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Trypanosome brucei genetic crosses between T. brucei 927 and T. brucei 927

text: Trypanosoma brucei

characteristic: sample origin

text: Trypanosoma brucei


characteristic: Bone ID

text: MPI-EVA

text: public

characteristic: Submitter Id

text: DNA extracted from fossilised bone of Vindija Neandertal individual Vi33.16

characteristic: description

text: fossil metagenome

text: fossil metagenome

text: Female

characteristic: sex


text: UU

text: public

unit: week

characteristic: age

text: house mouse

text: mitochondrial DNA purified from liver of a mutator mouse at 30 weeks of age

text: Mus musculus

text: Mus musculus

text: Mutator mouse

characteristic: source


text: BAH-GU

text: public

text: Foot-and-Mouth Disease Virus strain O1BFS1860 used in an infection experiment in cattle

text: Foot-and-mouth disease virus (strain O1)

characteristic: organism

text: Foot-and-Mouth Disease Virus, strain O1BFS1860

characteristic: title


characteristic: External Id

text: SLU

characteristic: INSDC first public

text: public

text: February 2008

characteristic: Time of sample collection

text: Soil sampled collected one week after rice seed harvested in rice-mungbean-rice treatment in February 2008

text: soil

characteristic: habitat

text: 10º 34’ N

characteristic: latitude

text: 106º 00’ E

characteristic: longitude

text: soil metagenome

text: soil metagenome

text: Stages of soiling

characteristic: soil type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SLU

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: February 2008

text: Soil sampled collected one week after rice seed harvested in intensive rice treatment in February 2008

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

text: soil metagenome

text: Stages of soiling


text: SLU

text: public

characteristic: Submitter Id

text: February 2008

text: Soil sampled collected one week after rice seed harvested in rice-mungbean-maize treatment in February 2008

characteristic: description

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

text: soil metagenome

text: Stages of soiling


text: SLU

text: public

text: May 2007

text: Soil sampled collected by rice-mungbean-maize treatment in May 2007

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Stages of soiling


text: SLU

text: public

text: May 2007

text: Soil sampled collected by rice-maize-rice treatment in May 2007

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

text: soil metagenome

text: Stages of soiling


text: SLU

text: public

text: May 2007

text: Soil sampled collected by intensive rice treatment in May 2007

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

text: soil metagenome

text: Stages of soiling


text: SLU

text: public

text: February 2008

text: Soil sampled collected one week after rice seed harvested in rice-maize-rice treatment in February 2008

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

text: soil metagenome

text: Stages of soiling


text: SLU

text: public

text: May 2007

text: Soil sampled collected by rice-mungbean-rice treatment in May 2007

text: soil

text: 10º 34’ N

text: 106º 00’ E

text: soil metagenome

text: soil metagenome

text: Stages of soiling


text: SC

text: public

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: SC

text: public

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: Parabacteroides distasonis

text: Parabacteroides distasonis


text: SC

text: public

text: Bacteroides vulgatus

text: Bacteroides vulgatus


text: SC

text: public

text: Prevotella stercorea

text: Prevotella stercorea


text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Plasmodium gallinaceum

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: Pgal_H_NoPCR-sc-2011-04-04T14:13:17Z-1117300

text: Plasmodium gallinaceum

text: Plasmodium gallinaceum

characteristic: strain


text: Plasmodium gallinaceum

text: SC

characteristic: INSDC first public

text: public

text: Pgal_D_NoPCR-sc-2011-04-04T14:12:41Z-1117296

text: Plasmodium gallinaceum

text: Plasmodium gallinaceum


text: Plasmodium gallinaceum

text: SC

text: public

text: Pgal_F_NoPCR-sc-2011-04-04T14:13:15Z-1117298

text: Plasmodium gallinaceum

text: Plasmodium gallinaceum


text: Plasmodium gallinaceum

text: SC

text: public

text: Pgal_G_NoPCR-sc-2011-04-04T14:13:16Z-1117299

text: Plasmodium gallinaceum

text: Plasmodium gallinaceum


text: Plasmodium gallinaceum

text: SC

text: public

text: Pgal_E_NoPCR-sc-2011-04-04T14:13:15Z-1117297

text: Plasmodium gallinaceum

text: Plasmodium gallinaceum


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: So 9/23


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: CDC 6117-70


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: 314 003


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: RKS 3013


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: CDC 129-73


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Ewing 102


text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica

text: ST 73/21 Ew


text: SC

text: public

text: Genomic DNA from Citrobacter freundii str. ballerup 7851/39 isolated in 1939 from a female patient from a female patient suffering from symptoms of gastroenteritis.

text: ballerup 7851/39


text: SC

text: public

characteristic: Strain

text: SL1344 containing a ~2kb deletion that removes most of aroA, all of SL0916 and part of cmk

characteristic: Strain details

text: Salmonella enterica subsp. enterica serovar Typhimurium


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: IT

characteristic: STRAIN

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: Collection date

characteristic: ENA-LAST-UPDATE

text: Danio rerio

characteristic: Host (scientific name)

text: HARVARD UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:HARVARD UNIVERSITY

text: whole intestine

characteristic: body habitat

text: Metagenome sample taken from 6 adult zebrafish (Danio rerio) intestine, fish grown in laboratory aquaculture.

text: conventional lab aquaculture

characteristic: environment

text: USA:North Carolina, Chapel Hill

characteristic: geographic location (country)

text: 35.902392 N 79.056177 W

characteristic: geographic location (latitude and longitude)

characteristic: host taxid

text: strain: SJA

text: Adults(7 months)

characteristic: life stage

text: Individuals pooled: 6

characteristic: miscellaneous parameter

text: fish metagenome

text: fish metagenome


characteristic: External Id

text: Danio rerio

text: HARVARD UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: whole intestine

text: Metagenome sample taken from 4 adult wild-caught zebrafish (Danio rerio) intestine, from Bengal, India.

characteristic: description

text: wild-caught

text: India:Bengal

text: 26.34407 N 89.218536 E

text: Adults

text: Individuals pooled: 4

text: fish metagenome

characteristic: organism

text: fish metagenome


characteristic: Collection date

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Danio rerio

text: HARVARD UNIVERSITY

characteristic: INSDC first public

text: public

text: whole intestine

text: Metagenome sample taken from 10 adult zebrafish (Danio rerio) intestine, fish grown in laboratory aquaculture.

text: lab aquaculture

text: USA:Washington, Seattle

text: 47.649908 N 122.306521 W

text: Adults(12 months)

text: Individuals pooled: 10

text: fish metagenome

text: fish metagenome


text: SC

characteristic: INSDC center name

text: public

text: DS

characteristic: STRAIN

text: Plasmodium chabaudi adami

text: Plasmodium chabaudi adami


text: SC

text: public

text: DK

text: Plasmodium chabaudi adami

text: Plasmodium chabaudi adami


text: SC

text: public

text: CB

text: Plasmodium chabaudi chabaudi

text: Plasmodium chabaudi chabaudi


text: GIST

text: public

unit: degrees C

characteristic: Sample storage condition

text: 3 months

characteristic: Sample storage duration

unit: mg

characteristic: amount or size of sample collected

characteristic: collection date

text: 16S rRNA sequences of fecal bacterial community from Goose

text: South Korea:Jeonnam, lake

characteristic: geographic location (Country)

text: healthy

characteristic: health or disease status of specific host at time of collection

text: Wild goose

characteristic: host common name

characteristic: host tax-id

characteristic: library reads sequenced

text: PCR

characteristic: nucleic acid amplification

text: Stool DNA extraction kit (Bioneer, South Korea)

characteristic: nucleic acid extraction

text: organismal metagenomes

text: initial denaturation at 94C for 5 min; followed by 25 cycles of denaturation at 94C for 30 sec, annealing at 60C for 30 sec, and elongation at 72C for 1 min 20 sec. The amplified PCR products were purified using resin columns, and 1 microgram of PCR product for each sample was pooled and subjected to pyrosequencing.

characteristic: pcr conditions

text: (5'-X-AC-GAGTTTGATCMTGGCTCAG-3' and 5'-X-AC-WTTACCGCGGCTGCTGG-3' where X denotes a barcode uniquely designed for each sample with a linker AC

characteristic: pcr primers

text: fecal swab

characteristic: sample collection device or method

text: organismal metagenomes

text: 454 GS FLX

characteristic: sequencing method

text: 16S 27F 518R

characteristic: target gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sample storage condition

text: 3 months

characteristic: Submitter Id

text: 16S rRNA sequences of fecal bacterial community from Swine

characteristic: description

text: South Korea:Jeonnam, farm

text: healthy

text: Pig

text: PCR

text: organismal metagenomes

characteristic: organism

text: initial denaturation at 94 C for 5 min; followed by 25 cycles of denaturation at 94 C for 30 sec, annealing at 60 C for 30 sec, and elongation at 72 C for 1 min 20 sec. The amplified PCR products were purified using resin columns, and 1 g of PCR product for each sample was pooled and subjected to pyrosequencing.

text: fecal swab

text: organismal metagenomes

text: 454 GS FLX

text: 16S 27F 518R


text: GIST

text: public

text: -80 degree C

text: 3 months

characteristic: Sample storage duration

characteristic: amount or size of sample collected

characteristic: collection date

text: 16S rRNA sequences of fecal bacterial community from Dairy cattle

text: South Korea:Jeonnam, farm

characteristic: geographic location (Country)

text: healthy

characteristic: health or disease status of specific host at time of collection

text: Milk cow

characteristic: host common name

characteristic: host tax-id

characteristic: library reads sequenced

text: PCR

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: organismal metagenomes

characteristic: pcr conditions

characteristic: pcr primers

text: fecal swab

text: organismal metagenomes

text: 454 GS FLX

text: 16S 27F 518R


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 3 months

unit: ml

text: 16S rRNA sequences of fecal bacterial community from Yeongsan river site Y1

text: South Korea:Naju, Yeongsan river

text: >1600 E. coli CFU/ 100ml

text: PCR

text: freshwater metagenome

text: freeze dry

characteristic: sample collection device or method

text: freshwater metagenome

text: 454 GS FLX

characteristic: sequencing method

text: 16S 27F 518R

characteristic: target gene

characteristic: title


text: GIST

text: public

characteristic: Sample storage condition

text: 3 months

characteristic: Sample storage duration

characteristic: Submitter Id

text: 200 mg

characteristic: amount or size of sample collected

characteristic: collection date

text: 16S rRNA sequences of fecal bacterial community from Human

characteristic: description

text: South Korea:GIST, school

characteristic: geographic location (Country)

text: healthy

characteristic: health or disease status of specific host at time of collection

text: Human

characteristic: host common name

characteristic: host tax-id

characteristic: library reads sequenced

text: PCR

text: organismal metagenomes

characteristic: organism

text: initial denaturation at 94 C for 5 min; followed by 25 cycles of denaturation at 94 C for 30 sec, annealing at 60 C for 30 sec, and elongation at 72 C for 1 min 20 sec. The amplified PCR products were purified using resin columns, and 1microgram of PCR product for each sample was pooled and subjected to pyrosequencing.

text: fecal swab

text: organismal metagenomes

text: 454 GS FLX

text: 16S 27F 518R


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 3 months

text: 16S rRNA sequences of fecal bacterial community from Duck

text: South Korea:Jeonnam, farm

text: healthy

text: Duck

text: PCR

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: organismal metagenomes

characteristic: pcr conditions

text: 5'-X-AC-GAGTTTGATCMTGGCTCAG-3' and 5'-X-AC-WTTACCGCGGCTGCTGG-3' where X denotes a barcode uniquely designed for each sample with a linker AC

characteristic: pcr primers

text: fecal swab

text: organismal metagenomes

text: 454 GS FLX

text: 16S 27F 518R


text: GIST

text: public

characteristic: Sample storage condition

text: 3 months

characteristic: Sample storage duration

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

text: 16S rRNA sequences of fecal bacterial community from Yeongsan river site Y3

characteristic: description

text: South Korea:Damyang, Yeongsan river

characteristic: geographic location (Country)

text: >1600 E. coli CFU/ 100ml

characteristic: health or disease status of specific host at time of collection

text: PCR

text: freshwater metagenome

text: freeze dry

characteristic: sample collection device or method

text: freshwater metagenome

text: 454 GS FLX

characteristic: sequencing method

text: 16S 27F 518R

characteristic: target gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 3 months

text: 16S rRNA sequences of fecal bacterial community from Chicken

text: South Korea:Jeonnam, farm

text: healthy

text: Chicken

characteristic: host common name

characteristic: host tax-id

characteristic: library reads sequenced

text: PCR

text: organismal metagenomes

characteristic: organism

text: fecal swab

text: organismal metagenomes

text: 454 GS FLX

text: 16S 27F 518R


text: GIST

text: public

characteristic: Sample storage condition

text: 3 months

characteristic: Sample storage duration

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

text: 16S rRNA sequences of fecal bacterial community from Beef cattle

characteristic: description

text: South Korea:Jeonnam, farm

characteristic: geographic location (Country)

text: healthy

characteristic: health or disease status of specific host at time of collection

text: Beef cow

text: PCR

characteristic: nucleic acid amplification

characteristic: nucleic acid extraction

text: organismal metagenomes

characteristic: pcr conditions

characteristic: pcr primers

text: fecal swab

text: organismal metagenomes

text: 454 GS FLX

text: 16S 27F 518R


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: STRAIN

text: Yersinia mollaretii

text: Yersinia mollaretii


text: SC

text: public

characteristic: Submitter Id

text: Yersinia rohdei

characteristic: organism

text: Yersinia rohdei


characteristic: ENA-CHECKLIST

text: SC

text: public

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not known

characteristic: host health state

text: not known

text: Yersinia rohdei

text: Yersinia rohdei

characteristic: serovar

text: sheep

characteristic: strain

text: Yersinia rohdei; Yersinia rohdei; Yersinia rohdei

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: United Kingdom

text: not known

text: not known

text: Yersinia mollaretii

text: Yersinia mollaretii

text: sheep

text: Yersinia mollaretii; Yersinia mollaretii; Yersinia mollaretii


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: France

text: not known

text: not known

text: Yersinia mollaretii

text: Yersinia mollaretii

text: cattle

text: Yersinia mollaretii; Yersinia mollaretii


characteristic: External Id

text: SC

text: public

text: Russia

text: not known

text: not known

text: Yersinia kristensenii

text: Yersinia kristensenii

text: not known

text: human

text: Yersinia kristensenii; Yersinia


text: SC

characteristic: INSDC center name

text: public

text: United Kingdom

text: not known

text: not known

text: Yersinia intermedia

text: Yersinia intermedia

text: sheep

text: Yersinia intermedia; Yersinia intermedia; Yersinia intermedia


text: SC

characteristic: INSDC first public

text: public

text: Yersinia intermedia

text: Yersinia intermedia


text: SC

characteristic: INSDC last update

text: public

text: United Kingdom

text: not known

text: not known

text: Yersinia intermedia

text: Yersinia intermedia

text: cattle


text: SC

text: public

characteristic: INSDC status

text: United Kingdom

text: not known

text: not known

text: Yersinia mollaretii

text: Yersinia mollaretii

text: not known

text: sheep


text: SC

text: public

characteristic: SRA accession

text: Finland

text: not known

text: faeces

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: human

text: Yersinia frederiksenii; Yersinia frederiksenii


text: SC

text: public

text: Finland

text: not known

text: faeces

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: not known

text: human


text: SC

text: public

text: Finland

text: not known

text: faeces

text: Yersinia intermedia

text: Yersinia intermedia

text: human

text: Yersinia intermedia; Yersinia intermedia


text: SC

text: public

text: Finland

text: not known

text: food: lettuce

text: Yersinia pekkanenii

text: Yersinia pekkanenii

text: not known

text: environmental

text: Yersinia pekkanenii; Yersinia aldovae


text: SC

text: public

text: France

text: not known

text: faeces

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: human


text: SC

text: public

text: Finland

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: cat

text: Yersinia pseudotuberculosis; Yersinia pseudotuberculosis


text: SC

text: public

text: France

text: not known

text: faeces

text: Yersinia kristensenii

text: Yersinia kristensenii

text: Nag

text: human

text: Yersinia kristensenii; Yersinia frederiksenii


text: SC

text: public

characteristic: STRAIN

text: Yersinia mollaretii

text: Yersinia mollaretii


text: SC

text: public

characteristic: Submitter Id

text: Yersinia frederiksenii

text: Yersinia frederiksenii


text: SC

text: public

text: Australia

text: not known

text: not known

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis

text: marsupial


characteristic: ENA-CHECKLIST

text: SC

text: public

text: France

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: hare


text: SC

text: public

text: Finland

characteristic: geographic location (country and/or sea)

text: not known

text: faeces

text: Yersinia kristensenii

text: Yersinia kristensenii

text: not known

text: human

text: Yersinia kristensenii; Yersinia kristensenii


text: SC

text: public

text: Finland

text: not known

characteristic: host health state

text: faeces

text: Yersinia kristensenii

text: Yersinia kristensenii

text: human


text: SC

text: public

text: Finland

text: not known

text: faeces

text: Yersinia bercovieri

text: Yersinia bercovieri

text: non-typable

characteristic: serovar

text: human

text: Yersinia bercovieri; Yersinia bercovieri


text: SC

text: public

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis


text: SC

text: public

text: Japan

text: not known

text: not known

text: Yersinia similis

text: Yersinia similis

text: mole

characteristic: strain

text: Yersinia similis; Yersinia similis


text: SC

text: public

text: Germany

text: not known

text: not known

text: Yersinia similis

text: Yersinia similis

text: rabbit

text: Yersinia similis; Yersinia similis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Italy

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: bird


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Germany

text: not known

text: not known

text: Yersinia kristensenii

text: Yersinia kristensenii

text: pig

text: Yersinia kristensenii; Yersinia mollaretii


characteristic: External Id

text: SC

text: public

text: Russia

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: rodent


text: SC

characteristic: INSDC center name

text: public

text: South Korea

text: not known

text: water

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: environmental

text: Yersinia pseudotuberculosis; Yersinia pseudotuberculosis; Yersinia pseudotuberculosis


text: SC

characteristic: INSDC first public

text: public

text: Russia

text: not known

text: food: cabbage

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: environmental


text: SC

characteristic: INSDC last update

text: public

text: Ireland

text: not known

text: not known

text: Yersinia massiliensis

text: Yersinia massiliensis

text: not known

text: human

text: Yersinia massiliensis; Yersinia massiliensis


text: SC

text: public

characteristic: INSDC status

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: human


text: SC

text: public

characteristic: SRA accession

text: Brazil

text: not known

text: not known

text: Yersinia kristensenii

text: Yersinia kristensenii

text: oyster


text: SC

text: public

text: Japan

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: racoon dog


text: SC

text: public

characteristic: STRAIN

text: Yersinia intermedia

text: Yersinia intermedia


text: SC

text: public

characteristic: Submitter Id

text: Brazil

text: not known

text: water

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: environmental


text: SC

text: public

text: Brazil

text: not known

text: water

text: Yersinia kristensenii

characteristic: organism

text: Yersinia kristensenii

text: environmental


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Germany

text: not known

text: not known

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not known

text: badger


text: SC

text: public

text: Brazil

characteristic: geographic location (country and/or sea)

text: not known

text: sewage water

text: Yersinia intermedia

text: Yersinia intermedia

text: environmental


text: SC

text: public

text: Finland

text: not known

characteristic: host health state

text: faeces

text: Yersinia intermedia

text: Yersinia intermedia

text: human


text: SC

text: public

text: Yersinia mollaretii

text: Yersinia mollaretii


text: SC

text: public

text: Yersinia rohdei

text: Yersinia rohdei


text: SC

text: public

text: United Kingdom

text: not known

text: not known

text: Yersinia mollaretii

text: Yersinia mollaretii

text: not known

characteristic: serovar

text: sheep


text: SC

text: public

text: United Kingdom

text: not known

text: not known

text: Yersinia rohdei

text: Yersinia rohdei

text: sheep

characteristic: strain


text: SC

text: public

text: United Kingdom

text: not known

text: not known

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: sheep

text: Yersinia frederiksenii; Yersinia frederiksenii; Yersinia frederiksenii

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: South Korea

text: not known

text: not known

text: Yersinia massiliensis

text: Yersinia massiliensis

text: not known

text: chicken

text: Yersinia massiliensis; Yersinia massiliensis; Yersinia


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Finland

text: not known

text: faeces

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: not known

text: human


characteristic: External Id

text: SC

text: public

text: Brazil

text: not known

text: water

text: Yersinia intermedia

text: Yersinia intermedia

text: environmental


text: SC

characteristic: INSDC center name

text: public

text: Ireland

text: not known

text: not known

text: Yersinia rohdei

text: Yersinia rohdei

text: not known

text: human

text: Yersinia rohdei; Yersinia rohdei


text: SC

characteristic: INSDC first public

text: public

text: Ireland

text: not known

text: not known

text: Yersinia frederiksenii

text: Yersinia frederiksenii

text: not known

text: human


text: SC

characteristic: INSDC last update

text: public

text: Yersinia bercovieri

text: Yersinia bercovieri


text: SC

text: public

characteristic: INSDC status

text: Ireland

text: not known

text: not known

text: Yersinia enterocolitica

text: Yersinia enterocolitica

text: pig

text: Yersinia enterocolitica; Yersinia enterocolitica


text: SC

text: public

characteristic: SRA accession

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: Submitter Id

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_115_4_52_NL3-sc-2010-08-03-259735

text: Neisseria lactamica

characteristic: organism

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_115_4_52_NL4-sc-2010-08-03-259734

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_HE_10_05_D3_Col1-sc-2010-08-03-259729

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_113_4_52_NL4-sc-2010-08-03-259725

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_113_4_52_NL3-sc-2010-08-03-259722

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_113_4_52_NL2-sc-2010-08-03-259723

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: Con_Harv_113_D1_col1-sc-2010-08-03-259743

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_115_4_52_NL1-sc-2010-08-03-259742

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_HE_10_05_D3_Col5-sc-2010-08-03-259719

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: Con_Harv_113_D1_col5-sc-2010-08-03-259740

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: Con_Harv_113_D1_col2-sc-2010-08-03-259738

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: Con_Harv_113_D1_col3-sc-2010-08-03-259737

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_115_4_52_NL2-sc-2010-08-03-259736

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_HE_10_05_D3_Col3-sc-2010-08-03-259720

text: Neisseria lactamica

text: Neisseria lactamica


text: SC

text: public

text: HD_Con_115_4_52_NL5-sc-2010-08-03-259733

text: Neisseria lactamica

text: Neisseria lactamica


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Egypt

text: disease

text: wound

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


text: SC

text: public

text: Denmark

characteristic: geographic location (country and/or sea)

text: disease

text: lung

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


text: SC

text: public

text: Spain

text: disease

characteristic: host health state

text: skin

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


text: SC

text: public

text: Turkey: Izmir

text: disease

text: Pleural fluid

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

characteristic: serovar

text: human

text: Staphylococcus aureus


text: SC

text: public

characteristic: STRAIN

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: TUR

text: Staphylococcus

characteristic: genus

text: Turkey: Istanbul

text: Homo sapiens

characteristic: host

text: not known

characteristic: isolate

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

characteristic: strain

text: Staphylococcus aureus

characteristic: title

value: vancomycin

value: cefoxitin

value: penicillin

value: gentamicin

value: oxacillin


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TUR

text: Staphylococcus

text: Turkey: Istanbul

text: Homo sapiens

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus

value: Staphylococcus aureus

value: resistant

value: trimethoprim-sulfamethoxazole


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Malaysia

text: disease

text: wound

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Sri Lanka

characteristic: geographic location (country and/or sea)

text: not known

characteristic: host health state

text: not known

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


text: SC

text: public

text: Portugal

text: carriage

text: nasal

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

characteristic: serovar

text: human

text: Staphylococcus aureus


text: SC

text: public

text: India

text: carriage

text: nasal

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


text: SC

text: public

text: Syria

text: carriage

text: throat

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus


text: SC

text: public

text: TUR

text: Staphylococcus

characteristic: genus

text: Turkey: Izmir

text: Homo sapiens

characteristic: host

text: disease

characteristic: isolate

text: Aspiration

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

text: Staphylococcus aureus

value: ciprofloxacin

value: clindamycin

value: erythromycin


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: TUR

text: Staphylococcus

text: Turkey: Izmir

text: Homo sapiens

text: not known

text: Urine

text: urinary tract

text: Staphylococcus aureus

text: Staphylococcus aureus

text: not known

text: human

characteristic: strain

text: Staphylococcus aureus

characteristic: title

value: susceptible