text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_1_2_sibling-sc-2012-08-01T09:51:35Z-1460067

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 2 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


status: PUBLIC

text: Pharyngula : Primordial 15 - ZFS:0000030

tag: attribute

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ZMP_phenotype_7_1_sibling-sc-2012-12-07T13:56:04Z-1522609

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 7 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: pharyngula - prim 5 ZFS:0000029 - prim 15 ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_5_2_sibling-sc-2012-10-11T10:35:54Z-1497931

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 4 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

text: Danio rerio

text: mixed


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: VETMEDUNI

text: public

text: horse

text: Pooled Y chromosomal PCR products of 8 Lipizzan horses.

characteristic: description

text: Equus caballus

text: Equus caballus

text: Pool Lipizzan

characteristic: title

type: has member


text: Segmentation - 5-9 somites ZFS:0000024

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_3_3_sibling-sc-2013-05-29T10:02:49Z-1460079

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 3 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: External Id

text: VETMEDUNI

characteristic: INSDC center name

text: public

text: horse

text: Pooled Y chromosomal PCR products of 9 different domestic horse breeds.

text: Equus caballus

text: Equus caballus

text: Pool Breed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ZMP_phenotype_3_1_sibling-sc-2013-05-29T09:59:33Z-1460075

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 3 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_7_2_mutant-sc-2012-12-07T13:56:06Z-1522610

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 7 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_8_1_mutant-sc-2012-12-07T14:05:54Z-1522620

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 8 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_3_6_mutant-sc-2013-05-29T09:30:02Z-1460084

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype3 clutch6. A 5 base indexing sequence (CCAAC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_4_mutant-sc-2012-12-07T14:16:30Z-1522638

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotypen 9 clutch4 A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_1_sibling-sc-2012-12-07T14:16:21Z-1522633

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 9 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_2_4_sibling-sc-2012-08-01T09:51:40Z-1460071

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 2 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_7_4_mutant-sc-2012-12-07T13:56:13Z-1522614

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 7 clutch4. A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_8_5_mutant-sc-2012-12-07T14:06:09Z-1522628

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 8 clutch5. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

text: public

text: ZMP_phenotype_8_2_sibling-sc-2012-12-07T14:06:01Z-1522623

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 8 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: ZMP_phenotype_1_4_sibling-sc-2012-08-01T09:51:28Z-1460061

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 1 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: pharyngula - prim 5 ZFS:0000029 - prim 15 ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_4_3_mutant-sc-2012-10-11T10:35:55Z-1497932

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 4 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: ZMP_phenotype_8_6_mutant-sc-2012-12-07T14:06:13Z-1522630

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 8 clutch 6. A 5 base indexing sequence (CCAAC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: ZMP_phenotype_9_2_mutant-sc-2012-12-07T14:16:23Z-1522634

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 9 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_3_sibling-sc-2012-12-07T14:06:04Z-1522625

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 8 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_7_5_sibling-sc-2012-12-07T13:56:19Z-1522617

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 7 clutch5. A 5 base indexing sequence (ACGGG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_3_1_mutant-sc-2013-05-29T09:28:06Z-1460074

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 3 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_4_2_mutant-sc-2012-10-11T10:35:54Z-1497930

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 4 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

characteristic: sample description

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_4_3_sibling-sc-2012-10-11T10:35:57Z-1497933

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 4 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

text: Danio rerio

text: mixed

characteristic: strain


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_2_4_mutant-sc-2012-08-01T09:51:38Z-1460070

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 2 clutch4. A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_3_4_mutant-sc-2013-05-29T10:03:19Z-1460080

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype3 clutch4 A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_3_6_sibling-sc-2013-05-29T09:31:19Z-1460085

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 3 clutch6. A 5 base indexing sequence (AGCGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_1_4_mutant-sc-2012-08-01T09:51:27Z-1460060

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype1 clutch4 A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_2_3_sibling-sc-2012-08-01T09:51:37Z-1460069

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 2 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_3_4_sibling-sc-2013-05-29T10:03:50Z-1460081

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 3 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_9_4_sibling-sc-2012-12-07T14:16:31Z-1522639

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 9 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

text: public

text: ZMP_phenotype_7_6_mutant-sc-2012-12-07T13:56:20Z-1522618

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 7 clutch6. A 5 base indexing sequence (CCAAC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: ZMP_phenotype_7_3_sibling-sc-2012-12-07T13:56:12Z-1522613

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 7 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: pharyngula - prim 5 ZFS:0000029 - prim 15 ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_4_4_mutant-sc-2012-10-11T10:35:58Z-1497934

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 4 clutch4. A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: ZMP_phenotype_1_5_sibling-sc-2012-08-01T09:51:30Z-1460063

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 1 clutch5. A 5 base indexing sequence (ACGGG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: ZMP_phenotype_8_3_mutant-sc-2012-12-07T14:06:02Z-1522624

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 8 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_4_1_sibling-sc-2012-10-11T10:35:52Z-1497929

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 4 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_2_5_sibling-sc-2012-08-01T09:51:42Z-1460073

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 2 clutch5. A 5 base indexing sequence (ACGGG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_1_1_mutant-sc-2012-08-01T09:51:18Z-1460054

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype1clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_2_sibling-sc-2012-12-07T14:16:25Z-1522635

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 9 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

characteristic: sample description

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_5_sibling-sc-2012-12-07T14:06:11Z-1522629

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 8 clutch5. A 5 base indexing sequence (ACGGG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed

characteristic: strain


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: ZMP_phenotype_1_3_mutant-sc-2012-08-01T09:51:24Z-1460058

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype1 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_4_mutant-sc-2012-12-07T14:06:06Z-1522626

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 8 clutch4. A 5 base indexing sequence (GCCGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_7_5_mutant-sc-2012-12-07T13:56:17Z-1522616

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 7 clutch5. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_7_2_sibling-sc-2012-12-07T13:56:08Z-1522611

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 7 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_7_3_mutant-sc-2012-12-07T13:56:10Z-1522612

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 7 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_3_5_mutant-sc-2013-05-29T10:04:21Z-1460082

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype3 clutch5. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: pharyngula - prim 5 ZFS:0000029 - prim 15 ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_4_4_sibling-sc-2012-10-11T10:35:59Z-1497935

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 4 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

text: public

text: ZMP_phenotype_3_2_sibling-sc-2013-05-29T10:01:40Z-1460077

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 3 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: ZMP_phenotype_2_1_mutant-sc-2012-08-01T09:51:31Z-1460064

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 2 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_7_1_mutant-sc-2012-12-07T13:56:00Z-1522608

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 7 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: ZMP_phenotype_1_3_sibling-sc-2012-08-01T09:51:25Z-1460059

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 1 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: ZMP_phenotype_1_1_sibling-sc-2012-08-01T09:51:20Z-1460055

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 1 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_3_mutant-sc-2012-12-07T14:16:26Z-1522636

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 9 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_1_sibling-sc-2012-12-07T14:05:58Z-1522621

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 8 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_2_3_mutant-sc-2012-08-01T09:51:36Z-1460068

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 2 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: pharyngula - prim 5 ZFS:0000029 - prim 15 ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_4_1_mutant-sc-2012-10-11T10:35:51Z-1497928

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 4 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph4

characteristic: sample description

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_6_sibling-sc-2012-12-07T14:06:15Z-1522631

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 8 clutch 6. A 5 base indexing sequence (AGCGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed

characteristic: strain


text: embryonic

text: Wildtype

characteristic: ArrayExpress-Genotype

text: brain

text: wildtype

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: FKRP_H206-sc-2012-09-10T12:10:47Z-1477934

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

characteristic: ArrayExpress-DevelopmentalStage

text: mutant

text: brain

characteristic: ArrayExpress-OrganismPart

text: MEB disease

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: FKRP_H142-sc-2012-09-10T12:10:44Z-1477931

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: mutant

text: brain

text: MEB disease

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: FKRP_H216-sc-2012-09-10T12:10:48Z-1477936

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: Wildtype

text: brain

text: wildtype

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: FKRP_H222-sc-2012-09-10T12:10:51Z-1477940

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: Wildtype

text: brain

text: wildtype

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: FKRP_H137-sc-2012-09-10T12:10:43Z-1477930

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: mutant

text: brain

text: MEB disease

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: FKRP_H204-sc-2012-09-10T12:10:45Z-1477932

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: mutant

text: brain

text: MEB disease

text: Mus musculus

text: SC

text: public

text: FKRP_H220-sc-2012-09-10T12:10:50Z-1477939

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from brain

text: Mus musculus


text: embryonic

text: Wildtype

text: brain

text: wildtype

text: Mus musculus

text: SC

text: public

text: FKRP_H205-sc-2012-09-10T12:10:46Z-1477933

text: house mouse

text: Mus musculus

text: RNA from brain

characteristic: sample description

text: Mus musculus


text: embryonic

text: Wildtype

characteristic: ArrayExpress-Genotype

text: brain

text: wildtype

text: Mus musculus

text: SC

text: public

text: FKRP_H223-sc-2012-09-10T12:10:52Z-1477941

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: Wildtype

text: brain

text: wildtype

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SC

text: public

text: FKRP_H215-sc-2012-09-10T12:10:47Z-1477935

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

text: mutant

text: brain

text: MEB disease

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: FKRP_H217-sc-2012-09-10T12:10:49Z-1477937

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: embryonic

characteristic: ArrayExpress-DevelopmentalStage

text: mutant

text: brain

text: MEB disease

text: Mus musculus

text: SC

text: public

text: FKRP_H218-sc-2012-09-10T12:10:50Z-1477938

text: house mouse

text: Mus musculus

text: RNA from brain

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: No

characteristic: ArrayExpress-Compound

text: Wildtype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 24 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Obfoxochip_6-sc-2012-09-25T16:30:53Z-1484244

text: house mouse

text: Mus musculus

text: CHIP DNA from Osteoblasts

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: DMSO

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: 24 hours

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Obfoxochip_2-sc-2012-09-25T16:35:44Z-1484240

text: house mouse

text: Mus musculus

text: CHIP DNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: MELATONIN

text: 100 nM

characteristic: ArrayExpress-Dose

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

text: SC

text: public

characteristic: SRA accession

text: Obfoxochip_3-sc-2012-09-25T16:30:51Z-1484241

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: CHIP DNA from Osteoblasts

characteristic: sample description

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: DMSO

characteristic: ArrayExpress-Compound

text: Wildtype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 24 hours

text: SC

characteristic: INSDC last update

text: public

text: Obfoxochip_1-sc-2012-09-25T16:30:48Z-1484239

text: house mouse

text: Mus musculus

text: CHIP DNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: MELATONIN

text: 100 nM

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: 24 hours

characteristic: ArrayExpress-TimePoint

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Obfoxochip_4-sc-2012-09-25T16:30:51Z-1484242

text: house mouse

text: Mus musculus

text: CHIP DNA from Osteoblasts

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: No

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

text: male

text: Mus musculus

text: 26 hours

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Obfoxochip_8-sc-2012-09-25T16:30:55Z-1484246

text: house mouse

text: Mus musculus

text: CHIP DNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: No

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

text: SC

text: public

text: Obfoxochip_5-sc-2012-09-25T16:35:45Z-1484243

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: CHIP DNA from Osteoblasts

characteristic: sample description

text: Mus musculus


text: OSTEOBLASTS

text: No

characteristic: ArrayExpress-Compound

text: Wildtype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 25 hours

text: SC

characteristic: INSDC last update

text: public

text: Obfoxochip_7-sc-2012-09-25T16:30:54Z-1484245

text: house mouse

text: Mus musculus

text: CHIP DNA from Osteoblasts

text: Mus musculus


text: Homozygote

text: spinal cord

text: Motor and sensory neuron degeneration, Zfp106 knockout

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Zfpsc_hom4-sc-2012-10-11T14:31:02Z-1497957

text: house mouse

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus


text: Homozygote

characteristic: ArrayExpress-Genotype

text: spinal cord

text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Zfpsc_hom2-sc-2012-10-11T14:31:00Z-1497955

text: house mouse

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus

characteristic: strain


text: Wildtype

text: spinal cord

text: None, wild type control Zfp106 knockout

text: male

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: Zfpsc_wt4-sc-2012-10-11T14:30:55Z-1497951

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from spinal cord

text: Mus musculus


text: Homozygote

text: spinal cord

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: Zfpsc_hom5-sc-2012-10-11T14:31:03Z-1497958

text: house mouse

text: Mus musculus

text: RNA from spinal cord

characteristic: sample description

text: Mus musculus


text: Wildtype

text: spinal cord

text: None, wild type control Zfp106 knockout

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

text: Zfpsc_wt1-sc-2012-10-11T14:30:51Z-1497948

text: house mouse

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus


text: Homozygote

text: spinal cord

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Zfpsc_hom1-sc-2012-10-11T14:30:59Z-1497954

text: house mouse

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus


text: Wildtype

characteristic: ArrayExpress-Genotype

text: spinal cord

text: None, wild type control Zfp106 knockout

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Zfpsc_wt6-sc-2012-10-11T14:30:58Z-1497953

text: house mouse

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus


text: Homozygote

text: spinal cord

text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Zfpsc_hom3-sc-2012-10-11T14:31:00Z-1497956

text: house mouse

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus

characteristic: strain


text: Wildtype

text: spinal cord

text: None, wild type control Zfp106 knockout

text: male

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: Zfpsc_wt2-sc-2012-10-11T14:30:52Z-1497949

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from spinal cord

text: Mus musculus


text: Wildtype

text: spinal cord

characteristic: ArrayExpress-OrganismPart

text: None, wild type control Zfp106 knockout

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: Zfpsc_wt5-sc-2012-10-11T14:30:56Z-1497952

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from spinal cord

text: Mus musculus


text: Wildtype

text: spinal cord

text: None, wild type control Zfp106 knockout

characteristic: ArrayExpress-Phenotype

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Zfpsc_wt3-sc-2012-10-11T14:30:54Z-1497950

text: house mouse

text: Mus musculus

text: RNA from spinal cord

characteristic: sample description

text: Mus musculus


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: SC_MMCC5409683-sc-2012-10-23T09:55:48Z-1499932

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC_MMCC5404596-sc-2012-10-23T10:00:53Z-1494536

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC_MMCC5404598-sc-2012-10-23T10:00:55Z-1494538

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

characteristic: INSDC status

text: SC_MMCC5404599-sc-2012-10-23T10:00:55Z-1494539

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

characteristic: SRA accession

text: SC_MMCC5404594-sc-2012-10-23T10:00:50Z-1494534

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_MMCC5409682-sc-2012-10-23T09:55:47Z-1499931

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:Sir William Dunn School of Pathology, University of Oxford

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

characteristic: common name

text: Protocols: HeLa cells CLIP-seq experiment using immunoprecipitation with CstF-64 antibody from the nucleoplasmic fraction, was employed to specifically target pre-mRNAs that are released from the DNA template before cleavage at the poly(A) site. This lead to identification of genes that utilize the co-transcriptional cleavage mechanism of transciption termination.

characteristic: description

characteristic: immunoprecipitate

text: Homo sapiens

text: Homo sapiens

text: Nucleoplasm

characteristic: organism part

text: Homo sapiens

characteristic: title


text: Institut Curie

text: public

tag: Namespace:Institut Curie

text: ArrayExpress

text: CLB-Ga

text: neuroblastoma

characteristic: cell type

text: human

text: Protocols: Neuroblastoma cell lines CLB-GA and CLB-RE: described in Schleiermacher G,et al. Cancer Genet Cytogenet. (2003) 141:32-42. Primary tumors NB1141 and NB1142: fresh tumors samples obtained at surgery were placed in liquid nitrogen and stored frozen at -80 C or in liquid nitrogen before RNA extraction. RNA extraction was done with Trizol as described in Fix et al. (2008) Genes Chromosomes Cancer. 47:819-34.

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: replicate 1

characteristic: replicate

text: Homo sapiens

text: male

characteristic: sex

text: CLB-Ga


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut Curie

characteristic: INSDC last update

text: public

text: ArrayExpress

text: CLB-Re

text: neuroblastoma

text: human

text: Homo sapiens

text: Homo sapiens

text: replicate 2

text: Homo sapiens

text: male

text: CLB-Re


text: Institut Curie

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 4 year

characteristic: age

text: ArrayExpress

text: human

text: neuroblastoma/Peripheral Nervous System

characteristic: disease state

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: abdominal, non adrenal tumor

text: replicate 4

text: Homo sapiens

text: female


text: Institut Curie

text: public

characteristic: Submitter Id

text: 3.6 year

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: neuroblastoma/Peripheral Nervous System

text: Homo sapiens

text: Homo sapiens

text: abdominal, non adrenal tumor

characteristic: organism part

text: replicate 3

text: Homo sapiens

text: male


text: Yersinia pseudotuberculosis

characteristic: ArrayExpress-Species

text: SC

text: public

text: NTUYP_67-sc-2012-12-05T12:16:10Z-1521672

text: Yersinia pseudotuberculosis

characteristic: organism

text: Yersinia pseudotuberculosis


text: Yersinia pseudotuberculosis

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: NTUYP_10-sc-2012-12-05T12:16:07Z-1521669

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis


text: Yersinia pseudotuberculosis

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: NTUYP_95-sc-2012-12-05T12:16:14Z-1521675

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis


E-MTAB-1086:Cohort (E2147)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-1086:Cohort (E2147)

tag: Namespace:Pediatric Diabetes Research Center, UCSD Stem Cell Program

text: ArrayExpress

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: human

text: Protocols: CyT49 hESCs were maintained and differentiated as previously described [DAmour, K.A., et al., Nat Biotechnol, 2006. 24:1392-401; Kroon, E., et al., Nat Biotechnol, 2008. 26:443-52; Kelly, O.G., et al., Nat Biotechnol. 29:750-6]. Non-adherent conditions were applied to hESC differentiation. Transplantation of hESC-derived aggregates into severe combined immnuodeficient-beige mice and subsequent analyses of graft function were performed as described previously [Kroon, E., et al., Nat Biotechnol, 2008. 26:443-52; Kelly, O.G., et al., Nat Biotechnol. 29:750-6] with the minor modifications. Differentiated cellular aggregates were allowed to settle by gravity and loaded into semi-permeable macrocapsules (TheraCyte 20 ul device). The TheraCyte device has a pore size permeable to most proteins, but not cells. The diffusion properties of TheraCyte devices have been studied [Rafael, E., et al., Cell Transplant, 1999. 8:317-26]. Devices loaded with cells were inserted subcutaneously under anesthesia. 2 to 6 _ 106 cells were transplanted into each mouse. Enzyme-linked immunosorbent assays (Mercodia) were used to measure serum levels of human c-peptide before and 60 min after administration of glucose to mice. Grafts were harvested at 20-weeks after transplantation. Briefly, cells were lysed in Trizol reagent (Invitrogen) for extraction of total RNA. Residual contaminating genomic DNA was removed using the Turbo Dnase kit (Ambion). mRNA was isolated from 2 ug of DNA-free total RNA using the Dynabeads mRNA Purification kit (Invitrogen). Strand-specific RNA-seq libraries were prepared as previously described [Parkhomchuk, D., et al., Nucleic Acids Res, 2009. 37:e123], with minor modifications. Following purification, mRNA was primed with Olig(dT)s and random hexamers, and reverse-transcribed to first-strand cDNA. Residual dNTPs were removed from the first-strand cDNA using Illustra MicroSpin G-25 columns (GE Healthcare). In the second-strand synthesis reaction, dUTPs were used instead of dTTPs. The converted double-strand cDNA was fragmented using a Bioruptor Sonicator for 60 cycles of 30 sec on and 30 sec off. After end-repair and adenine base addition, the cleaved double-strand cDNA fragments were ligated to Pair-end Adaptor Oligo Mix (Illumina) and size-fractionated on a 2% high resolution agarose gel (Sigma). cDNA fragments of 200 (+25 bp,-25bp) were recovered, and incubated with uracil-N-glycosylase (UNG) to digest the second-strand cDNA. Purified single-strand cDNA was then used as template for 15 cycles of amplification using pair-end PCR primers (Illumina). The amplified products were separated on a 2% agarose gel and a band between 225-275 bp excised.

text: embryo

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Cohort (E2147)

characteristic: title


E-MTAB-1086:DP3, 4, 5

text: Pediatric Diabetes Research Center, UCSD Stem Cell Program

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-1086:DP3, 4, 5

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: Protocols: CyT49 hESCs were maintained and differentiated as previously described [DAmour, K.A., et al., Nat Biotechnol, 2006. 24:1392-401; Kroon, E., et al., Nat Biotechnol, 2008. 26:443-52; Kelly, O.G., et al., Nat Biotechnol. 29:750-6]. Non-adherent conditions were applied to hESC differentiation. FACS isolation of late pancreatic endoderm (late PE) and polyhormonal cells (PH) was performed as previously described [Kelly, O.G., et al., Nat Biotechnol. 29:750-6]. hESC-derived hormone-producing cellular aggregates were enzymaticly dissociated to a single-cell suspension with Accumax (Innovative Cell Technologies) at 37 C for 20 min. Accumax was neutralized with FACS buffer (0.5%(wt/vol)BSA, 2 mM EDTA, PBS). Cells were then pelleted, resuspended in FACS buffer, and incubated with surface marker antibodies D200-APC (eBiosciences, 17-9200) and CD142-PE (BD Biosciences, 550312). FACS was performed on a FACSAria equipped with FACS DiVa software (BD Biosciences). Cells were sorted into PBS with 3% (vol/vol) FBS and pelleted for subsequent RNA-seq and ChIP-seq analysis. Briefly, cells were lysed in Trizol reagent (Invitrogen) for extraction of total RNA. Residual contaminating genomic DNA was removed using the Turbo Dnase kit (Ambion). mRNA was isolated from 2 ug of DNA-free total RNA using the Dynabeads mRNA Purification kit (Invitrogen). Strand-specific RNA-seq libraries were prepared as previously described [Parkhomchuk, D., et al., Nucleic Acids Res, 2009. 37:e123], with minor modifications. Following purification, mRNA was primed with Olig(dT)s and random hexamers, and reverse-transcribed to first-strand cDNA. Residual dNTPs were removed from the first-strand cDNA using Illustra MicroSpin G-25 columns (GE Healthcare). In the second-strand synthesis reaction, dUTPs were used instead of dTTPs. The converted double-strand cDNA was fragmented using a Bioruptor Sonicator for 60 cycles of 30 sec on and 30 sec off. After end-repair and adenine base addition, the cleaved double-strand cDNA fragments were ligated to Pair-end Adaptor Oligo Mix (Illumina) and size-fractionated on a 2% high resolution agarose gel (Sigma). cDNA fragments of 200 (+25 bp,-25bp) were recovered, and incubated with uracil-N-glycosylase (UNG) to digest the second-strand cDNA. Purified single-strand cDNA was then used as template for 15 cycles of amplification using pair-end PCR primers (Illumina). The amplified products were separated on a 2% agarose gel and a band between 225-275 bp excised.

text: embryo

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: DP3, 4, 5


text: public

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

text: human

characteristic: common name

text: Protocols: CyT49 hESCs were maintained and differentiated as previously described [DAmour, K.A., et al., Nat Biotechnol, 2006. 24:1392-401; Kroon, E., et al., Nat Biotechnol, 2008. 26:443-52; Kelly, O.G., et al., Nat Biotechnol. 29:750-6]. Non-adherent conditions were applied to hESC differentiation. Briefly, cells were lysed in Trizol reagent (Invitrogen) for extraction of total RNA. Residual contaminating genomic DNA was removed using the Turbo Dnase kit (Ambion). mRNA was isolated from 2 ug of DNA-free total RNA using the Dynabeads mRNA Purification kit (Invitrogen). Strand-specific RNA-seq libraries were prepared as previously described [Parkhomchuk, D., et al., Nucleic Acids Res, 2009. 37:e123], with minor modifications. Following purification, mRNA was primed with Olig(dT)s and random hexamers, and reverse-transcribed to first-strand cDNA. Residual dNTPs were removed from the first-strand cDNA using Illustra MicroSpin G-25 columns (GE Healthcare). In the second-strand synthesis reaction, dUTPs were used instead of dTTPs. The converted double-strand cDNA was fragmented using a Bioruptor Sonicator for 60 cycles of 30 sec on and 30 sec off. After end-repair and adenine base addition, the cleaved double-strand cDNA fragments were ligated to Pair-end Adaptor Oligo Mix (Illumina) and size-fractionated on a 2% high resolution agarose gel (Sigma). cDNA fragments of 200 (+25 bp,-25bp) were recovered, and incubated with uracil-N-glycosylase (UNG) to digest the second-strand cDNA. Purified single-strand cDNA was then used as template for 15 cycles of amplification using pair-end PCR primers (Illumina). The amplified products were separated on a 2% agarose gel and a band between 225-275 bp excised.

characteristic: description

text: embryo

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

text: embryonic stem cell

text: human

text: Protocols: CyT49 hESCs were maintained and differentiated as previously described [DAmour, K.A., et al., Nat Biotechnol, 2006. 24:1392-401; Kroon, E., et al., Nat Biotechnol, 2008. 26:443-52; Kelly, O.G., et al., Nat Biotechnol. 29:750-6]. Non-adherent conditions were applied to hESC differentiation. Chromatin immunoprecipitations were performed on aggregated hESC-derived cells, FACS-sorted cells and transplanted grafts as previously described [Bhandare, R., et al., Genome Res. 20:428-33]. Briefly, samples were crosslinked in 1.1% formaldehyde/PBS for 10 min at room temperature and then quenched with 0.125M glycine/PBS. Samples were subsequently washed twice with PBS and then lysed in 1% SDS. For sonication, lysates were sonicated with a Bioruptor Sonicator (Diagenode) three times, for 5 min each with a 30 sec on and 30 sec off cycle, resulting in 200-500bp chromatin fragments. The sheared chromatin was incubated overnight at 4 C with 50 ul of Dynabeads sheep anti-rabbit IgG (Invitrogen), preincubated with 5 ug rabbit anti-H3K4me3 (Millipore, 04-745) or rabbit anti-H3K27me3 (Millipore, 07-499) antibodies. Immnuoprecipitated complexes were further eluted, reverse crosslinked, and subjected to library preparation. For aggregated hESC-derived and FACS-sorted samples, a total of 2 to 5 _ 106 cells were used for each ChIP-seq run. All ChIP-seq libraries were prepared as per Illuminas instructions (http://www.illumina.com). Briefly, total ChIP DNA was subjected to end-repair and ligated to the Adaptor Oligo Mix (Illumina). For input library preparation, 10 ng of input DNA from each sample was used. After adaptor ligation, DNA fragments were size-fractionated by gel electrophoresis and excised at (+25 bp,-25bp). Following gel purification, DNA fragments were amplified with 18 PCR cycles and purified using a MiniElute PCR Purification kit (Qiagen).

text: embryo

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


E-MTAB-1086:Cohort (E2182)

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-1086:Cohort (E2182)

text: ArrayExpress

text: embryonic stem cell

text: human

text: embryo

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Cohort (E2182)


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: islet cell

text: human

text: Protocols: Briefly, cells were lysed in Trizol reagent (Invitrogen) for extraction of total RNA. Residual contaminating genomic DNA was removed using the Turbo Dnase kit (Ambion). mRNA was isolated from 2 ug of DNA-free total RNA using the Dynabeads mRNA Purification kit (Invitrogen). Strand-specific RNA-seq libraries were prepared as previously described [Parkhomchuk, D., et al., Nucleic Acids Res, 2009. 37:e123], with minor modifications. Following purification, mRNA was primed with Olig(dT)s and random hexamers, and reverse-transcribed to first-strand cDNA. Residual dNTPs were removed from the first-strand cDNA using Illustra MicroSpin G-25 columns (GE Healthcare). In the second-strand synthesis reaction, dUTPs were used instead of dTTPs. The converted double-strand cDNA was fragmented using a Bioruptor Sonicator for 60 cycles of 30 sec on and 30 sec off. After end-repair and adenine base addition, the cleaved double-strand cDNA fragments were ligated to Pair-end Adaptor Oligo Mix (Illumina) and size-fractionated on a 2% high resolution agarose gel (Sigma). cDNA fragments of 200 (+25 bp,-25bp) were recovered, and incubated with uracil-N-glycosylase (UNG) to digest the second-strand cDNA. Purified single-strand cDNA was then used as template for 15 cycles of amplification using pair-end PCR primers (Illumina). The amplified products were separated on a 2% agarose gel and a band between 225-275 bp excised.

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ArrayExpress-DevelopmentalStage

text: mixed

characteristic: ArrayExpress-Sex

text: Haemonchus contortus

characteristic: ArrayExpress-Species

text: inbred ISE

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:24:49Z-1290107

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus L4

characteristic: sample description

text: Haemonchus contortus

text: inbred ISE

characteristic: strain


text: mixed

text: Haemonchus contortus

text: inbred ISE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:21:53Z-1290103

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus L1

text: Haemonchus contortus

text: inbred ISE


text: dissected adult female gut

text: female

text: Haemonchus contortus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Haemonchus_contortus-sc-2013-02-15T10:22:20Z-1296970

characteristic: Submitter Id

text: barber pole worm

text: Haemonchus contortus

text: pooled dissected guts from adult females

text: Haemonchus contortus


text: sheathed L3

text: mixed

text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:23:26Z-1296968

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

text: pooled H. contortus L3

text: Haemonchus contortus

text: Inbred ISE


text: mixed

text: Haemonchus contortus

text: inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:22:35Z-1290105

text: barber pole worm

text: Haemonchus contortus

characteristic: organism

text: pooled H. contortus L1

text: Haemonchus contortus

text: inbred ISE


text: adult female

text: female

text: Haemonchus contortus

text: inbred ISE

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:25:29Z-1290111

text: barber pole worm

text: Haemonchus contortus

text: pooled adult females

text: Haemonchus contortus

text: inbred ISE


text: mixed

text: Haemonchus contortus

text: inbred ISE

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:24:22Z-1290106

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus L4

text: Haemonchus contortus

text: inbred ISE


text: dissected adult female gut

characteristic: ArrayExpress-DevelopmentalStage

text: female

text: Haemonchus contortus

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-15T10:21:30Z-1296969

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus


text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2012-02-06T13:17:17Z-1296964

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Inbred ISE


text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2012-02-06T13:17:19Z-1296965

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Inbred ISE


text: adult male

text: male

characteristic: ArrayExpress-Sex

text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:23:47Z-1296958

text: barber pole worm

text: Haemonchus contortus

text: pooled adult males

text: Haemonchus contortus

text: Inbred ISE


text: eggs

text: mixed

text: Haemonchus contortus

characteristic: ArrayExpress-Species

text: inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:21:07Z-1290101

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus eggs

text: Haemonchus contortus

text: inbred ISE


text: adult male

text: male

text: Haemonchus contortus

text: Inbred ISE

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:23:39Z-1296957

text: barber pole worm

text: Haemonchus contortus

text: pooled adult males

text: Haemonchus contortus

text: Inbred ISE


text: eggs

text: mixed

text: Haemonchus contortus

text: inbred ISE

characteristic: External Id

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-11T10:03:49Z-1290100

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus eggs

text: Haemonchus contortus

text: inbred ISE


text: adult female

text: female

text: Haemonchus contortus

text: inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:25:21Z-1290110

text: barber pole worm

text: Haemonchus contortus

text: pooled adult females

characteristic: sample description

text: Haemonchus contortus

text: inbred ISE


text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2012-02-06T13:17:16Z-1296963

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Inbred ISE

characteristic: strain


text: sheathed L3

text: mixed

text: Haemonchus contortus

text: Inbred ISE

text: SC

characteristic: INSDC center name

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:23:09Z-1296966

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus L3

text: Haemonchus contortus

text: Inbred ISE


text: adult female

text: female

text: Haemonchus contortus

text: inbred ISE

text: SC

characteristic: INSDC first public

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:25:13Z-1290109

text: barber pole worm

text: Haemonchus contortus

text: pooled adult females

text: Haemonchus contortus

text: inbred ISE


text: dissected adult female gut

text: female

text: Haemonchus contortus

text: ISE

text: SC

characteristic: INSDC last update

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:25:58Z-1296971

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: ISE


text: mixed

text: Haemonchus contortus

text: inbred ISE

text: SC

text: public

characteristic: INSDC status

text: Haemonchus_contortus-sc-2013-02-08T16:22:09Z-1290104

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus L1

text: Haemonchus contortus

text: inbred ISE


text: sheathed L3

text: mixed

text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

characteristic: SRA accession

text: Haemonchus_contortus-sc-2013-02-08T16:23:19Z-1296967

text: barber pole worm

text: Haemonchus contortus

text: pooled H. contortus L3

text: Haemonchus contortus

text: Inbred ISE


text: adult male

text: male

text: Haemonchus contortus

text: Inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:23:59Z-1296959

characteristic: Submitter Id

text: barber pole worm

text: Haemonchus contortus

text: pooled adult males

text: Haemonchus contortus

text: Inbred ISE


text: eggs

text: mixed

text: Haemonchus contortus

text: inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:21:30Z-1290102

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

text: pooled H. contortus eggs

text: Haemonchus contortus

text: inbred ISE


text: mixed

text: Haemonchus contortus

text: inbred ISE

text: SC

text: public

text: Haemonchus_contortus-sc-2013-02-08T16:24:31Z-1290108

text: barber pole worm

text: Haemonchus contortus

characteristic: organism

text: pooled H. contortus L4

text: Haemonchus contortus

text: inbred ISE


characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Single-cell or technical replicate cDNA libraries were prepared as described previously (Tang et al. 2010 Nat Protoc 5(3): 516-535) with the following modifications: PBS had to be replaced by solution A for plant cells because A. thaliana cells rapidly die in PBS. We confirmed that solution A does not negatively affect the performance of the protocol. Furthermore, we included a third RNase inhibitor from Qiagen (#129916), used 1 ul of the reverse transcription master mix, and performed 24 cycles of the initial PCR. HeLa total RNA and ERCC spike-ins were diluted using RNase free water. 1 ul of a 1:1,000,000 dilution of the ERCC spike-ins and 50 pg of HeLa total RNA were included in the lysis buffer. Final cDNA libraries (200ng - 2000ng depending on cell type) were checked for known marker genes, and after passing quality control, libraries were fragmented with the Covaris S2 system as reported previously (Tang et al. 2010 Nat Protoc 5(3): 516-535) using Covaris mircoTUBEs (#520045) and a volume of 130 ul for shearing (libraries were diluted to that volume using RNase-free water). After fragmentation, the volume was reduced to 85ul using a SpeedVac concentrator and samples were subjected to standard Illumina library preparation using the NEBNext DNA Sample Prep Master Mix Set 1 kit according to manufacturers instructions. Modified Illumina PE adapters including custom-made multiplexing barcodes were ligated (amount of adapters was adjusted according to amount of input material), and Illumina PE primers (PE PCR Primer 1.0 and PE PCR Primer 2.0) were used for the PCR enrichment step (10 cycles) of the NEBNext protocol. The final purification step was performed using AMPure XP beads rather than columns and clusters were generated following the standard Illumina protocol.

characteristic: description

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: ArrayExpress

text: thale cress

text: Protocols: The pWOX5::GFP and pGL2::GPF seeds where sterilized using 4 h of standard bleach vapor sterilization (Clough and Bent 1998 Plant J 16(6): 735-743). After sterilization seeds were stratified in the dark at 4C for 72 h and plants were subsequently grown vertically for 4 days in constant light conditions at 22C and 45% humidity. Standard root plates were used for growing plants (i.e., 1 x Murashige and Skoog basal medium, 0.5% sucrose, 2.6 mM 2-(N-Morpholino) ethanesulfonic acid (pH 5.7) and 1% agarose). QC and Gl2 cells were isolated as previously described (Birnbaum et al. 2005 Nat Methods 2(8): 615-619). In brief, root tips of fluorescent marker lines were cut off using a scalpel and transferred to solution B for protoplasting (0.6 M Mannitol, 10mM KCl, 10 mM MgCl2, 10 mM CaCl2, 1 mg/ml BSA, 0.39 mg/ml MES, pH 5.5, 1.5% Cellulase R10, 0.1% Pectolyase Y-23). Root tips were protoplasted on a platform shaker for 30 min for the Gl2 cells and 60 min for the QC cells. Release of QC cells was facilitated by gently streaking root tips on a 75 um cell strainer every 15 min whereas GL2 cells were released by gently pipetting pieces of tissue up and down using a mouth pipette. Single cells of interest were identified by GFP signal and washed 3 times using individual drops of washing solution A (0.6 M Mannitol, 10 mM KCl, 10 mM MgCl2, 10 mM CaCl2, 1 mg/ml BSA, 0.39 mg/ml MES, pH 5.5). After 3 washes cells were transferred to PCR tubes containing the appropriate lysis buffer within a volume > 0.5 ul of solution A. Single-cell or technical replicate cDNA libraries were prepared as described previously (Tang et al. 2010 Nat Protoc 5(3): 516-535) with the following modifications: PBS had to be replaced by solution A for plant cells because A. thaliana cells rapidly die in PBS. We confirmed that solution A does not negatively affect the performance of the protocol. Furthermore, we included a third RNase inhibitor from Qiagen (#129916), used 1 ul of the reverse transcription master mix, and performed 24 cycles of the initial PCR. HeLa total RNA and ERCC spike-ins were diluted using RNase free water. 1 ul of a 1:1,000,000 dilution of the ERCC spike-ins and 50 pg of HeLa total RNA were included in the lysis buffer. Final cDNA libraries (200ng - 2000ng depending on cell type) were checked for known marker genes, and after passing quality control, libraries were fragmented with the Covaris S2 system as reported previously (Tang et al. 2010 Nat Protoc 5(3): 516-535) using Covaris mircoTUBEs (#520045) and a volume of 130 ul for shearing (libraries were diluted to that volume using RNase-free water). After fragmentation, the volume was reduced to 85ul using a SpeedVac concentrator and samples were subjected to standard Illumina library preparation using the NEBNext DNA Sample Prep Master Mix Set 1 kit according to manufacturers instructions. Modified Illumina PE adapters including custom-made multiplexing barcodes were ligated (amount of adapters was adjusted according to amount of input material), and Illumina PE primers (PE PCR Primer 1.0 and PE PCR Primer 2.0) were used for the PCR enrichment step (10 cycles) of the NEBNext protocol. The final purification step was performed using AMPure XP beads rather than columns and clusters were generated following the standard Illumina protocol.

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root

text: Arabidopsis thaliana


text: EMBL-EBI

text: public

text: ArrayExpress

text: thale cress

text: Protocols: A. thaliana total RNA was diluted using RNase-free water, and 50 pg were used for each cDNA library preparation using the SMARTer Ultra Low RNA Kit for Illumina Sequencing from Clontech according to manufacturers instructions. 24 cycles of PCR were used for library amplification, and after passing quality control, finalized cDNA libraries (6 ng - 20 ng) were fragmented with the Covaris S2 system as reported previously (Tang et al. 2010 2010 Nat Protoc 5(3): 516-535) using Covaris mircoTUBEs (#520045) and a volume of 130 ul for shearing (libraries were diluted to that volume using RNase-free water). After fragmentation, the volume was reduced to 44 ul using a SpeedVac concentrator and samples were subjected to standard Illumina library preparation using the NEBNext ChIP-Seq Sample Prep Master Mix Set 1 kit according to manufacturers instructions. Illumina PE adapters including custom-made multiplexing barcodes were ligated (amount of adapters was adjusted according to amount of input material), and Illumina PE primers (PE PCR Primer 1.0 and PE PCR Primer 2.0) were used for the PCR enrichment step (15 cycles) of the NEBNext protocol. The final purification step was performed using AMPure XP beads rather than columns and clusters were generated following the standard Illumina protocol.

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana


text: Wellcome Trust Sanger Institute

text: public

tag: Namespace:Wellcome Trust Sanger Institute

text: frozen sample

characteristic: biosource type

text: ArrayExpress

text: human

text: Protocols:

text: Homo sapiens

text: Homo sapiens

text: spleen

text: Homo sapiens

text: mixed sex

characteristic: sex


text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: frozen sample

text: ArrayExpress

text: human

text: Protocols:

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


text: Wellcome Trust Sanger Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: frozen sample

text: ArrayExpress

text: human

text: Protocols:

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: mixed sex


text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: frozen sample

text: ArrayExpress

text: human

text: Protocols:

text: Homo sapiens

text: Homo sapiens

text: muscle

text: Homo sapiens

text: male


text: Wellcome Trust Sanger Institute

text: public

text: frozen sample

text: ArrayExpress

text: human

characteristic: common name

text: Protocols:

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: mixed sex


characteristic: ENA-FIRST-PUBLIC

text: Wellcome Trust Sanger Institute

text: public

text: frozen sample

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols:

text: Homo sapiens

text: Homo sapiens

text: heart

text: Homo sapiens

text: male


text: Wellcome Trust Sanger Institute

text: public

text: frozen sample

text: ArrayExpress

text: human

text: Protocols:

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male


text: Wellcome Trust Sanger Institute

text: public

text: frozen sample

text: ArrayExpress

text: human

text: Protocols:

text: Homo sapiens

text: Homo sapiens

text: testis

characteristic: organism part

text: Homo sapiens

text: male


text: public

text: E-MTAB-1504:Ter119_neg_E12.5_Fetal_Liver_Cells

tag: Namespace:BSRC Alexander Fleming, Division of Molecular Oncology

text: 12.5 day

characteristic: age

text: ArrayExpress

text: Erythroid

characteristic: cell type

text: house mouse

text: Protocols: Fetal liver cells from day E12.5 C57/BL6 mouse embryos expanded for 3 days in serum free medium (von Lindern et al, 2001) Fractionation of Ter119- and Ter119+ cells with Miltenyi beads (Schuh et al, 2005) Formaldehyde-crosslinked chromatin from 10^7 Ter119- or Ter119+ fetal liver cells was prepared as previously described (Schuh et al, 2005)

text: Ter119- proerythroblasts

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: Fetal liver

text: Mus musculus

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BSRC Alexander Fleming, Division of Molecular Oncology

characteristic: INSDC center name

text: public

text: E-MTAB-1504:Ter119_pos_E12.5_Fetal_Liver_Cells

text: 12.5 day

text: ArrayExpress

text: Erythroid

text: house mouse

text: Ter119+ differentiated erythrocytes

text: Mus musculus

text: Mus musculus

text: Fetal liver

text: Mus musculus


text: Cancer Research UK Cambridge Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Cancer Research UK Cambridge Institute

text: ArrayExpress

text: epithelial

text: human

text: Protocols: Tissue for ChIP-seq analyses was from patients who were treated at the Netherlands Cancer Institute.Three biopsies (14-gauge, 15 mm thick) were taken from each tumour, two of which where frozen with liquid nitrogen and one was formalin-fixed for direct clinical assessment. Tumour cell percentage was determined using Hematoxylin and Eosin (H&E), and tissue was only used for ChIP-seq analysis when tumour cell percentage was higher then 50%. All samples stained positive for Estrogen Receptor. Samples were processed and chromatin was extracted as described (Schmidt et al., Methods 48:3 pp240-248 2009) but with a number of modifications. During the immunoprecipitation, 100mg/ml glycogen (Invitrogen) or 20mg/ml recombinant histone 2B (M2505S; New England Biolabs) and 1mg/ml human mRNA (Invitrogen) was added as carriers for the ChIP. During the entire procedure, non-sticky eppendorf tubes were used (13-698-794; Fisher Scientific).

text: breast cancer

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: epithelial

text: human

characteristic: common name

text: Protocols: MCF7 cells were grown in DMEM medium, supplemented with 8% FBS and standard antibiotics. Samples were processed and chromatin was extracted as described (Schmidt et al., Methods 48:3 pp240-248 2009) but with a number of modifications. During the immunoprecipitation, 100mg/ml glycogen (Invitrogen) or 20mg/ml recombinant histone 2B (M2505S; New England Biolabs) and 1mg/ml human mRNA (Invitrogen) was added as carriers for the ChIP. During the entire procedure, non-sticky eppendorf tubes were used (13-698-794; Fisher Scientific).

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female


text: Institute for Systems Biology

text: public

tag: Namespace:Institute for Systems Biology

text: 8 week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The mice were euthanized at different time points post exposure (at 3, 8, 24, 48 and 72 hours); Eight week old female C57 Black mice were fasted for 24 hours prior to a single intraperitoneal injection of 350mg/kg of acetaminophen in phosphate buffer saline (PBS) (treatment group) or PBS (control group) Liver and plasma samples were collected from different time points after mice had been exposed to acetaminophen. The plasma was prepared from EDTA blood by centrifugation at 1000 x g for 15 minutes to separate the plasma and blood cells. Total RNA from liver and plasma was extracted with the miRNeasy kit (Qiagen, Germantown, MD), as described. The quality and quantity of the RNA were evaluated with Agilent 2100 Bioanalyzer (Santa Clara, CA) and NanoDrop 1000 spectrophotometer (Thermo Scientific, Wilmington, DE). we constructed a single library with an insert size ranging from 20 to 100 nucleotides long. We also did not conduct mRNA purification and fragmentation steps prior to library construction since we did not observe ribosomal RNA peaks from plasma RNA on the bioanalyzer, and most of the transcripts in circulation were probably not full-length based on prior studies. This approach allowed us to obtain a general profile for both miRNA and mRNA in the plasma from a single library.

characteristic: description

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: plasma

characteristic: organism part

text: treatment

characteristic: phenotype

text: Mus musculus

text: fresh specimen

characteristic: specimen with known storage state


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Systems Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 8 week

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: plasma

text: control

text: Mus musculus

text: fresh specimen

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CAREERI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2 week

text: ArrayExpress

text: Chinese brown frog

text: Protocols: Materials were sampled from wild field. Seedling was harvested two weeks after germination. Total RNA was extracted from matural plant and seedling of Reaumuria soongorica with E.Z.N.A. Plant RNA Kit (Omega Bio-tek, Doraville, GA, USA)

text: seedling

text: Rana chensinensis

text: Reaumuria soongorica

text: Rana chensinensis


text: Epithelial

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: Gastrointestinal

characteristic: ArrayExpress-OrganismPart

text: Infection

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: KO2xIL22_1-sc-2013-03-25T09:41:12Z-1462105

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from primary intestinal epithelium

characteristic: sample description

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: WT1xIL22_1-sc-2013-03-25T09:41:26Z-1462117

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus

characteristic: strain


text: Epithelial

characteristic: ArrayExpress-CellType

text: Adult

text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: WT3xIL22_1-sc-2013-03-25T09:41:34Z-1462125

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: Gastrointestinal

characteristic: ArrayExpress-OrganismPart

text: Infection

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: SC

text: public

text: KO2xCtrl_1-sc-2013-03-25T09:41:10Z-1462103

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: WT4xCtrl_2-sc-2013-03-25T09:41:38Z-1462128

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from primary intestinal epithelium

characteristic: sample description

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: KO3xIL22_2-sc-2013-03-25T09:41:18Z-1462110

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

characteristic: ArrayExpress-CellType

text: Adult

text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: WT4xIL22_2-sc-2013-03-25T09:41:40Z-1462130

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus

characteristic: strain


text: Epithelial

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: Gastrointestinal

characteristic: ArrayExpress-OrganismPart

text: Infection

characteristic: ArrayExpress-Phenotype

text: male

text: Mus Musculus

text: SC

text: public

text: KO3xCtrl_2-sc-2013-03-25T09:41:16Z-1462108

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: KO1xIL22_1-sc-2013-03-25T09:41:08Z-1462101

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KO2xIL22_2-sc-2013-03-25T09:41:14Z-1462106

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

characteristic: sample description

text: Mus musculus


text: Epithelial

characteristic: ArrayExpress-CellType

text: Adult

text: Gastrointestinal

text: Infection

text: male

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: KO4xCtrl_1-sc-2013-03-25T09:41:19Z-1462111

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: Gastrointestinal

characteristic: ArrayExpress-OrganismPart

text: Infection

characteristic: ArrayExpress-Phenotype

text: female

text: Mus Musculus

text: SC

text: public

text: WT3xCtrl_1-sc-2013-03-25T09:41:31Z-1462123

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus

characteristic: strain


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: WT2xCtrl_1-sc-2013-03-25T09:41:28Z-1462119

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KO4xIL22_1-sc-2013-03-25T09:41:21Z-1462113

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

characteristic: ArrayExpress-CellType

text: Adult

text: Gastrointestinal

text: Infection

text: female

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: WT1xCtrl_1-sc-2013-03-25T09:41:24Z-1462115

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

characteristic: sample description

text: Mus musculus


text: Epithelial

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: Gastrointestinal

characteristic: ArrayExpress-OrganismPart

text: Infection

characteristic: ArrayExpress-Phenotype

text: female

text: Mus Musculus

text: SC

text: public

characteristic: SRA accession

text: WT1xCtrl_2-sc-2013-03-25T09:41:25Z-1462116

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus


text: Epithelial

text: Adult

text: Gastrointestinal

text: Infection

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: WT1xIL22_2-sc-2013-03-25T09:41:27Z-1462118

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from primary intestinal epithelium

text: Mus musculus

characteristic: strain