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tag: Namespace:University of Geneva

text: 20th July 2009

text: Phyllosphere fungal assemblages associated with 15 beech leaves taken from 5 trees

characteristic: elevation

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text: Temperate broadleaf and mixed forest biome ENVO:00000876

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

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characteristic: environment (material)

text: European beech

characteristic: host common name

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text: MIMARKS

characteristic: investigation type

text: ACTAC

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text: initial denaturation:95degC_5min; 30 cycles of denaturation:95degC_30sec; annealing=54degC_1min; extension=72degC_1min30sec; final extension=72degC_10min

characteristic: pcr conditions

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGACTACGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

characteristic: pcr primers

text: adult vascular leaf PO:0006340

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characteristic: geographic location (latitude)

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characteristic: organism

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGGCGCGGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

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text: 10th September 2009

characteristic: elevation

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text: Pyrosequencing


text: GSC:MIxS v2.1

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text: 21th July 2009

characteristic: elevation

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text: Pyrosequencing


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text: 17th July 2009

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


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text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 31th May 2010

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


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text: 15th September 2009

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characteristic: investigation type

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 7th July 2010

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characteristic: organism

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text: phyllosphere metagenome

text: Pyrosequencing


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text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 21th July 2009

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text: host-associated

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text: University of Geneva

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text: phyllosphere

characteristic: geographic location (latitude)

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 11th September 2009

text: Phyllosphere fungal assemblages associated with 15 beech leaves taken from 5 trees

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text: host-associated

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characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: CACAC

characteristic: multiplex identifiers

text: phyllosphere metagenome

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characteristic: plant body site

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text: Pyrosequencing

characteristic: sequencing method

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text: University of Geneva

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characteristic: SRA accession

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text: 5th July 2010

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text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

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characteristic: organism

text: initial denaturation:95degC_5min; 30 cycles of denaturation:95degC_30sec; annealing=54degC_1min; extension=72degC_1min30sec; final extension=72degC_10min

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGAGTGCGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGCGCGACTTGGTCATTTAGAGGAAGTAA

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


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text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 2nd June 2010

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text: host-associated

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text: MIMARKS

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text: France

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text: 11th September 2009

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 16th July 2009

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


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text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 6th July 2010

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 8th July 2010

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characteristic: environment (feature)

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text: MIMARKS

characteristic: investigation type

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characteristic: pcr primers

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text: Pyrosequencing

characteristic: sequencing method

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text: GSC, MIxS, MIMARKS

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text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 7th July 2010

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text: phyllosphere

characteristic: geographic location (latitude)

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text: European beech

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characteristic: organism

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text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 15th September 2009

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

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characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: GAGTG

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 31th May 2010

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: CACTA

text: phyllosphere metagenome

characteristic: organism

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGCACTAGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 10th September 2009

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: GTGAG

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 14th September 2009

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: TAGCG

text: phyllosphere metagenome

characteristic: organism

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGTAGCGGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGCGCGACTTGGTCATTTAGAGGAAGTAA

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 21th July 2009

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: ATGCG

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 20th July 2009

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: CGACG

text: phyllosphere metagenome

characteristic: organism

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGCGACGGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 7th July 2010

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: CAGAG

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGCAGAGGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGCGCGACTTGGTCATTTAGAGGAAGTAA

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 1st June 2010

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: CGACG

text: phyllosphere metagenome

characteristic: organism

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 2nd June 2010

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: ACACA

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGACACAGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 17th July 2009

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: CACTA

text: phyllosphere metagenome

characteristic: organism

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 3rd June 2010

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: TGATC

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGTGATCGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 14th September 2009

characteristic: collection date

text: Phyllosphere fungal assemblages associated with 15 beech leaves taken from 5 trees

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: AGTGC

text: phyllosphere metagenome

characteristic: organism

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 16th July 2009

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: ACACA

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2nd June 2010

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: GCAGC

text: phyllosphere metagenome

characteristic: organism

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 6th July 2010

characteristic: elevation

text: host-associated

characteristic: enviornmental package

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: GCGTA

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3rd June 2010

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: GCTGT

text: phyllosphere metagenome

characteristic: organism

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGGCTGTGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGATCGCCTTGGTCATTTAGAGGAAGTAA

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: GSC:MIxS v2.1

text: GSC, MIxS, MIMARKS

text: France

text: University of Geneva

text: public

text: 8th July 2010

characteristic: elevation

text: host-associated

characteristic: enviornmental package

text: Temperate broadleaf and mixed forest biome ENVO:00000876

characteristic: environment (biome)

text: plant-associated habitat ENVO:00009001

characteristic: environment (feature)

text: phyllosphere

characteristic: environment (material)

text: European beech

characteristic: host common name

characteristic: host taxid

text: MIMARKS

characteristic: investigation type

text: TCTAT

characteristic: multiplex identifiers

text: phyllosphere metagenome

characteristic: pcr conditions

text: ITS2 : CGTATCGCCTCCCTCGCGCCATCAGTCTATGCTGCGTTCTTCATCGATGC ITS1F : CTATGCGCCTTGCCAGCCCGCTCAGCGCGACTTGGTCATTTAGAGGAAGTAA

characteristic: pcr primers

text: adult vascular leaf PO:0006340

characteristic: plant body site

characteristic: project name

text: phyllosphere metagenome

text: Pyrosequencing

characteristic: sequencing method

characteristic: target gene

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: France

text: University of Geneva

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 5th July 2010

characteristic: collection date

characteristic: description

text: host-associated

text: plant-associated habitat ENVO:00009001

text: phyllosphere

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: European beech

text: MIMARKS

text: TAGCG

text: phyllosphere metagenome

characteristic: organism

text: initial denaturation:95degC_5min; 30 cycles of denaturation:95degC_30sec; annealing=54degC_1min; extension=72degC_1min30sec; final extension=72degC_10min

text: adult vascular leaf PO:0006340

text: phyllosphere metagenome

text: Pyrosequencing


text: SC

text: public

characteristic: StrainOrLine

text: ArrayExpress

characteristic: broker name

text: fission yeast

characteristic: common name

text: Protocols: All cDNA samples used for Illumina sequencing were prepared by first treating ~1 mg of total RNA for 30 min with amplification grade RNase-free DNase (Invitrogen), according to the manufacturer’s protocols. PolyA enriched RNA was then prepared using an oligo(dT) selection kit (Oligotex Direct mRNA MiniKit, Qiagen). The resulting poly(A)-enriched RNA was then converted to double-stranded cDNA using a cDNA synthesis kit (Superscript choice system for cDNA synthesis, Invitrogen) , primed by an oligo(dT) primer, according to the manufacturer’s protocols. Random-primed RNA from rapidly proliferating cells was treated with an enzyme that specifically degrades non-capped RNA molecules (mRNA-only™ Eukaryotic mRNA isolation kit, Epicentre Biotechnologies) according to the manufacturer’s protocols. The resulting cDNA was then converted to double-stranded cDNA as above, except that the reaction was primed with random hexamers. RNA samples from the pooled meiotic timepoints were subjected to IVT amplification after undergoing a poly(A) enrichment step as described above. RNA from the oxidative stress condition and prp2 mutant was treated in the same way as the rapidly proliferating samples with oligo(dT)-primed cDNA synthesis after mRNA enrichment.

text: pat1-114/pat1-114 ade6-M210/ade6-M216 h+/h+

characteristic: genotype

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: JB22 972h-

text: ArrayExpress

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fission yeast

text: prp2-1 leu1-32 h-

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: HOM

characteristic: ArrayExpress-Genotype

text: intestine

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: AM498_HOM_Input-sc-2012-10-22T13:08:06Z-9448

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

characteristic: sample description

text: Mus musculus


text: WT

characteristic: ArrayExpress-Immunoprecipitate

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_537_WT_H3K4-sc-2012-10-22T13:07:55Z-9433

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_497_HOM_H3K4-sc-2012-10-22T13:08:03Z-9443

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_503_HOM_Input-sc-2012-10-22T13:07:59Z-9438

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM541_WT_H3K4me3-sc-2012-10-22T13:07:43Z-7670

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM538_HOM_H3K4me3_input-sc-2012-10-22T13:07:47Z-7675

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_519_WT_Input-sc-2012-10-22T13:08:05Z-9446

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: WT_H3K4_input-sc-2012-10-22T13:07:38Z-5217

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM538_HOM_H3K4me3-sc-2012-10-22T13:07:46Z-7674

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: Am_149_HOM_H3K4-sc-2012-10-22T13:08:00Z-9439

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM263_WT_Input-sc-2012-10-22T13:07:57Z-9436

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM537_WT_H3K4me3-sc-2012-10-22T13:07:42Z-7668

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_497_HOM_Input-sc-2012-10-22T13:08:03Z-9444

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM537_WT_H3K4me3_input-sc-2012-10-22T13:07:42Z-7669

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM498_HOM_H3K4-sc-2012-10-22T13:08:06Z-9447

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM539_HOM_H3K4me3-sc-2012-10-22T13:07:48Z-7676

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM635_HOM_H3K4me3_input-sc-2012-10-22T13:07:45Z-7673

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: HOM

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_503_HOM_H3K4-sc-2012-10-22T13:07:58Z-9437

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM_521_WT_Input-sc-2012-10-22T13:08:02Z-9442

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: WT

text: intestine

text: Mus musculus

text: SC

text: public

text: AM263_WT_H3K4-sc-2012-10-22T13:07:57Z-9435

text: house mouse

text: Mus musculus

text: chip-seq for h3k4me3

text: Mus musculus


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___25__day_98_-sc-2012-01-18T12:06:38Z-1335365

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 25 (day 98)

characteristic: title


text: Human immunodeficiency virus 1

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: HIV_1_env_V3__subject___17__day_175_-sc-2012-01-18T12:06:35Z-1335360

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 17 (day 175)


text: Human immunodeficiency virus 1

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: HIV_1_env_V3__subject__28__day_429_-sc-2012-01-18T12:10:47Z-1335343

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #28 (day 429)


text: Human immunodeficiency virus 1

characteristic: External Id

text: SC

text: public

text: HIV_1_env_V3__subject__6__day_0_-sc-2012-01-18T12:05:41Z-1335291

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #6 (day 0)


text: Human immunodeficiency virus 1

text: SC

characteristic: INSDC center name

text: public

text: HIV_1_env_V3__subject__9__day_0_-sc-2012-01-18T12:05:43Z-1335294

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #9 (day 0)


text: Human immunodeficiency virus 1

text: SC

characteristic: INSDC first public

text: public

text: HIV_1_env_V3__subject__19__day_0_-sc-2012-01-18T12:10:37Z-1335304

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #19 (day 0)


text: Human immunodeficiency virus 1

text: SC

characteristic: INSDC last update

text: public

text: HIV_1_env_V3__subject__4__day_0_-sc-2012-01-18T12:10:33Z-1335289

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #4 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

characteristic: INSDC status

text: HIV_1_env_V3__subject__29__day_440_-sc-2012-01-18T12:06:21Z-1335344

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #29 (day 440)


text: Human immunodeficiency virus 1

text: SC

text: public

characteristic: SRA accession

text: HIV_1_env_V3__subject__14__day_413_-sc-2012-01-18T12:06:11Z-1335329

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #14 (day 413)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__7__day_0_-sc-2012-01-18T12:15:30Z-1335292

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #7 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__19__day_415_-sc-2012-01-18T12:10:45Z-1335334

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #19 (day 415)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__7__day_450_-sc-2012-01-18T12:10:41Z-1335322

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #7 (day 450)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__8__day_445_-sc-2012-01-18T12:06:06Z-1335323

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #8 (day 445)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__24__day_438_-sc-2012-01-18T12:06:18Z-1335339

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #24 (day 438)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__24__day_0_-sc-2012-01-18T12:05:56Z-1335309

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #24 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__20__day_0_-sc-2012-01-18T12:05:53Z-1335305

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #20 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__29__day_0_-sc-2012-01-18T12:06:00Z-1335314

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #29 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_255_-sc-2012-01-18T12:06:31Z-1335354

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 255)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__22__day_442_-sc-2012-01-18T12:35:47Z-1335337

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #22 (day 442)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__25__day_421_-sc-2012-01-18T12:10:46Z-1335340

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #25 (day 421)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___17__day_84_-sc-2012-01-18T12:10:50Z-1335358

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 17 (day 84)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__17__day_0_-sc-2012-01-18T12:05:51Z-1335302

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #17 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_219_-sc-2012-01-18T12:06:29Z-1335353

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 219)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__20__day_468_-sc-2012-01-18T12:06:15Z-1335335

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #20 (day 468)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___25__day_175_-sc-2012-01-18T12:06:39Z-1335366

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 25 (day 175)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___17__day_49_-sc-2012-01-18T12:06:32Z-1335357

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 17 (day 49)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__8__day_0_-sc-2012-01-18T12:05:42Z-1335293

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #8 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__2__day_0_-sc-2012-01-18T12:05:37Z-1335287

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #2 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__23__day_0_-sc-2012-01-18T12:05:56Z-1335308

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #23 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__23__day_387_-sc-2012-01-18T12:06:17Z-1335338

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #23 (day 387)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__22__day_0_-sc-2012-01-18T12:10:37Z-1335307

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #22 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__control_E6-sc-2012-01-18T12:15:35Z-1335346

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, control E6


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__16__day_0_-sc-2012-01-18T12:15:31Z-1335301

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #16 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__9__day_419_-sc-2012-01-18T12:06:07Z-1335324

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #9 (day 419)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___17__day_357_-sc-2012-01-18T12:06:36Z-1335362

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 17 (day 357)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__21__day_0_-sc-2012-01-18T12:05:54Z-1335306

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #21 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__5__day_438_-sc-2012-01-18T12:06:04Z-1335320

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #5 (day 438)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___25__day_35_-sc-2012-01-18T12:20:32Z-1335364

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 25 (day 35)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__27__day_0_-sc-2012-01-18T12:05:58Z-1335312

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #27 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__27__day_421_-sc-2012-01-18T12:06:20Z-1335342

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #27 (day 421)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__10__day_0_-sc-2012-01-18T12:10:34Z-1335295

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #10 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__1__day_436_-sc-2012-01-18T12:10:40Z-1335316

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #1 (day 436)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___17__day_266_-sc-2012-01-18T12:10:51Z-1335361

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 17 (day 266)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__control_E6_H8-sc-2012-01-18T12:06:26Z-1335348

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, control E6:H8


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__3__day_0_-sc-2012-01-18T12:05:38Z-1335288

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #3 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_8_-sc-2012-01-18T12:10:48Z-1335349

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 8)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__18__day_0_-sc-2012-01-18T12:05:52Z-1335303

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #18 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__13__day_0_-sc-2012-01-18T12:10:35Z-1335298

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #13 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___25__day_2_-sc-2012-01-18T12:06:37Z-1335363

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 25 (day 2)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__11__day_434_-sc-2012-01-18T12:06:08Z-1335326

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #11 (day 434)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_419_-sc-2012-01-18T12:06:19Z-1335341

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 419)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__28__day_0_-sc-2012-01-18T12:10:38Z-1335313

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #28 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___17__day_119_-sc-2012-01-18T12:06:34Z-1335359

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 17 (day 119)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__14__day_0_-sc-2012-01-18T12:05:46Z-1335299

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #14 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__6__day_422_-sc-2012-01-18T12:06:05Z-1335321

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #6 (day 422)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__30__day_427_-sc-2012-01-18T12:06:22Z-1335345

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #30 (day 427)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__13__day_420_-sc-2012-01-18T12:15:34Z-1335328

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #13 (day 420)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_63_-sc-2012-01-18T12:06:28Z-1335351

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 63)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__25__day_0_-sc-2012-01-18T12:20:30Z-1335310

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #25 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_90_-sc-2012-01-18T12:10:49Z-1335352

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 90)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__12__day_449_-sc-2012-01-18T12:06:09Z-1335327

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #12 (day 449)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__15__day_0_-sc-2012-01-18T12:05:47Z-1335300

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #15 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__2__day_437_-sc-2012-01-18T12:06:02Z-1335317

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #2 (day 437)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__26__day_34_-sc-2012-01-18T12:06:27Z-1335350

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #26 (day 34)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__30__day_0_-sc-2012-01-18T12:06:00Z-1335315

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #30 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__21__day_443_-sc-2012-01-18T12:06:16Z-1335336

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #21 (day 443)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__16__day_433_-sc-2012-01-18T12:10:44Z-1335331

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #16 (day 433)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject__11__day_0_-sc-2012-01-18T12:05:44Z-1335296

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject #11 (day 0)


text: Human immunodeficiency virus 1

text: SC

text: public

text: HIV_1_env_V3__subject___25__day_287_-sc-2012-01-18T12:10:52Z-1335367

text: Human immunodeficiency virus 1

text: Human immunodeficiency virus 1

text: HIV-1 env V3, subject # 25 (day 287)


E-MTAB-941:CTCF ChIP 1

status: KILLED

text: hepatocyte

characteristic: CellType

text: CRUK-CRI

text: killed

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

characteristic: StrainOrLine

text: E-MTAB-941:CTCF ChIP 1

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Hepatocytes were prepared by direct perfusion of the liver with buffered salt solution followed by percent formaldehyde. After 10 minutes the tissue was removed and diced in 500 mM glycine buffer to neutralize the formaldehyde. After homogenization the hepatocytes were rinsed with PBS. The animal livers were crosslinked with formaldehyde treatment and chromatin fragmented to an average of 300 bp by sonication. Chromatin from an mass equivalent of 1/4 mouse liver was used for each ChIP experiment. Solexa libraries were prepared following the instructions of Illumina (Sample preparation for genomic DNA version 2.2) with the following modifications. The ChIP-enriched DNA and input DNA were not further fragmented. After end-repair and addition of an A base to the 3 prime ends, the adapters were ligated to the ends of the DNA Fragments using 2 ml of fourtyfold diluted Adapter oligo mix in a total reaction volume of 25 ml. Between these steps, the DNA was purified using the DNA Clean-and-Concentrator-5 kit (Zymo Research). Subsequently, the DNA was amplified by 18 cycles of PCR, purified with QIAquick PCR purification Kit, and eluted with 33.5 ml of 10 mM tris buffer at pH7.0. The PCR-product was sized fractionated on 2 percent agarose gel and a gel slice containing the 200-300 bp fragments was excised.

characteristic: description

text: Mus musculus

text: Mus musculus

text: CTCF ChIP 1


E-MTAB-941:FOXA1 ChIP 2

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:FOXA1 ChIP 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: FOXA1 ChIP 2


E-MTAB-941:HNF1A ChIP 3

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:HNF1A ChIP 3

text: ArrayExpress

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: HNF1A ChIP 3

characteristic: title


E-MTAB-941:RAD21 ChIP 1

text: hepatocyte

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:RAD21 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: RAD21 ChIP 1


E-MTAB-941:FOXA2 ChIP 3

text: hepatocyte

characteristic: External Id

text: CRUK-CRI

characteristic: INSDC center name

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:FOXA2 ChIP 3

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: FOXA2 ChIP 3


E-MTAB-941:RNAP2 ChIP 1

text: hepatocyte

text: CRUK-CRI

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:RNAP2 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: RNAP2 ChIP 1


E-MTAB-941:FOXA2 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

characteristic: INSDC status

text: Mus musculus

text: liver

characteristic: SRA accession

text: E-MTAB-941:FOXA2 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: FOXA2 ChIP 1


E-MTAB-941:CEBPA ChIP 2

text: hepatocyte

characteristic: CellType

text: CRUK-CRI

text: killed

text: Mus musculus

characteristic: Organism

text: liver

text: E-MTAB-941:CEBPA ChIP 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: CEBPA ChIP 2


E-MTAB-941:STAG2 ChIP 1

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

characteristic: OrganismPart

characteristic: StrainOrLine

text: E-MTAB-941:STAG2 ChIP 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: STAG2 ChIP 1


E-MTAB-941:CEBPA ChIP 3

text: hepatocyte

text: CRUK-CRI

text: killed

text: Mus musculus

text: liver

text: E-MTAB-941:CEBPA ChIP 3

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: CEBPA ChIP 3