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text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: External Id

text: LIGUE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology grade

text: mutation

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

text: LIGUE

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

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characteristic: disease staging

text: High-grade oligoastrocytoma

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text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

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characteristic: 1p/19q codeletion

text: LIGUE

characteristic: INSDC center name

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text: ArrayExpress

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text: Glioblastoma

characteristic: histology

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text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

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text: High-grade oligoastrocytoma

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: human

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text: High-grade oligoastrocytoma

characteristic: histology grade

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text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

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characteristic: 1p/19q codeletion

text: LIGUE

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

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text: human

characteristic: common name

characteristic: description

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characteristic: disease staging

text: High-grade oligodendroglioma

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text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: LIGUE

text: public

text: ArrayExpress

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text: High-grade oligodendroglioma

characteristic: histology

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text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

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text: Homo sapiens

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text: Homo sapiens

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characteristic: sex


characteristic: 1p/19q codeletion

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characteristic: INSDC center name

characteristic: INSDC last update

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characteristic: INSDC status

characteristic: age

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text: High-grade oligoastrocytoma

characteristic: histology grade

text: wild type genotype

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text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: LIGUE

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Tumor

characteristic: disease staging

text: High-grade oligodendroglioma

text: wild type genotype

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

text: public

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology

text: wild type genotype

text: mutation

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


characteristic: 1p/19q codeletion

text: LIGUE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligodendroglioma

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: LIGUE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology grade

text: mutation

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

text: public

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: human

characteristic: common name

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text: Tumor

characteristic: disease staging

text: High-grade oligoastrocytoma

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text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: no

text: male


characteristic: 1p/19q codeletion

text: LIGUE

characteristic: INSDC center name

text: public

text: ArrayExpress

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text: human

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text: High-grade oligoastrocytoma

characteristic: histology

text: wild type genotype

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligodendroglioma

text: wild type genotype

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: mutation

text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology grade

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

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text: female


characteristic: 1p/19q codeletion

text: LIGUE

characteristic: INSDC center name

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text: ArrayExpress

characteristic: broker name

text: wild type genotype

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characteristic: common name

characteristic: description

text: Tumor

characteristic: disease staging

text: High-grade oligoastrocytoma

text: mutation

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: LIGUE

text: public

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology

text: mutation

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mutation

text: human

text: Tumor

text: Low-grade oligodendroglioma

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: male

characteristic: sex


characteristic: 1p/19q codeletion

text: LIGUE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligoastrocytoma

characteristic: histology grade

text: wild type genotype

text: mutation

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: LIGUE

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Tumor

characteristic: disease staging

text: Low-grade oligodendroglioma

text: wild type genotype

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

text: LIGUE

text: public

characteristic: age

text: ArrayExpress

text: human

text: Tumor

characteristic: histology

text: mutation

text: mutation

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: yes

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

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text: wild type genotype

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text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male

characteristic: sex


characteristic: 1p/19q codeletion

characteristic: ENA-CHECKLIST

text: LIGUE

characteristic: INSDC center name

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text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology grade

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text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: LIGUE

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Tumor

characteristic: disease staging

text: High-grade oligoastrocytoma

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

text: public

text: ArrayExpress

text: mutation

text: human

text: Tumor

text: High-grade oligodendroglioma

characteristic: histology

text: mutation

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: yes

text: male

characteristic: title


characteristic: 1p/19q codeletion

characteristic: ENA-CHECKLIST

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: High-grade oligoastrocytoma

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: LIGUE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: human

text: Tumor

text: Low-grade oligodendroglioma

characteristic: histology grade

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Tumor

characteristic: disease staging

text: Low-grade oligodendroglioma

text: mutation

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: female


characteristic: 1p/19q codeletion

characteristic: ENA-CHECKLIST

text: LIGUE

text: public

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: Low-grade oligodendroglioma

characteristic: histology

text: mutation

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: yes

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

text: LIGUE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Tumor

text: Low-grade oligodendroglioma

text: wild type genotype

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

text: human

text: Tumor

text: Low-grade oligodendroglioma

characteristic: histology grade

text: wild type genotype

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: yes

text: male


characteristic: 1p/19q codeletion

characteristic: ENA-CHECKLIST

text: LIGUE

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: Tumor

characteristic: disease staging

text: Low-grade oligodendroglioma

text: wild type genotype

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: no

text: male


characteristic: ENA-LAST-UPDATE

text: LIGUE

characteristic: INSDC center name

text: public

text: ArrayExpress

text: wild type genotype

text: human

text: Tumor

text: Low-grade oligodendroglioma

characteristic: histology

text: mutation

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: no

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: LIGUE

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Tumor

text: Normal

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens


text: CD4+ T cell

characteristic: ArrayExpress-CellType

characteristic: ArrayExpress-DevelopmentalStage

text: IRF4 M17 (sc-6059)

characteristic: ArrayExpress-Immunoprecipitate

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: C57BL/6 JAX

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

characteristic: sample description

text: Mus musculus

text: C57BL/6 JAX

characteristic: strain


text: CD4+ T cell

text: male

text: Mus musculus

text: C57BL/6 JAX

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: C57BL/6 JAX


status: KILLED

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EBI

characteristic: INSDC first public

text: killed

characteristic: SRA accession

text: fruit fly

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Test Sample

characteristic: title


text: ESC

characteristic: ArrayExpress-CellType

text: male

characteristic: ArrayExpress-Sex

text: Mouse

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: mouse ESC

text: Mus musculus


text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens


E-MTAB-3927:Sample 1

text: public

characteristic: INSDC status

text: E-MTAB-3927:Sample 1

tag: Namespace:Department of Plant Sciences University of Cambridge

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Leaf tissue of 3-5 week old plants were collected, frozen in liquid nitrogen and used for DNA exptraction Plants were grown on soil at 20°C, 60% humidity with a long day photoperiod (16 hours light) and light intensity of 150 μmols. DNA sodium bisulphite conversion was carried out using EZ DNA Methylation-Gold Kit (Zymo Research) 1 μg of genomic DNA was sheared to yield fragments with an average size of 340 bp using a Covaris E220 instrument and purified using Agencourt AMPure XP beads (ratio 1.8×) (Beckman Coulter). DNA was end-repaired and A-tailed using T4 DNA polymerase and Klenow Fragment (New England Biolabs), and purified again using XP beads (ratio 1.8×). Finally, double stranded paired-end adapters were ligated using Quick-Stick Ligase (Bioline) and DNA purified using XP beads (ratio 1.8×). 450 ng of DNA was used for sodium bisulphite conversion using EZ DNA Methylation-Gold Kit. DNA was quantified with a Bioanalyzer 2100 using the High Sensitivity DNA Kit (Agilent Technologies), and size-selected to yield fragments with the average size of 400 bp using XP beads (ratio 0.8×). DNA was barcoded using PCR amplification with KAPA HiFi HotStart Uracil+ Ready Mix (Kapabiosystems) with PE1.0 and one of the iPCRtag 1-17 oligonucleotides, then purified using XP beads (ratio 1×) and libraries quantified on a Bioanalyzer 2100.

characteristic: description

text: 3-5 weeks

characteristic: development stage

text: wild-type Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 1


E-MTAB-3927:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Department of Plant Sciences University of Cambridge

characteristic: INSDC center name

text: public

text: E-MTAB-3927:Sample 10

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-3927:Sample 11

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-3927:Sample 11

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 11

characteristic: title


E-MTAB-3927:Sample 12

characteristic: INSDC last update

text: public

text: E-MTAB-3927:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-3927:Sample 13

text: public

characteristic: INSDC status

text: E-MTAB-3927:Sample 13

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 13


E-MTAB-3927:Sample 14

text: public

text: E-MTAB-3927:Sample 14

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: development stage

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 14


E-MTAB-3927:Sample 15

text: public

text: E-MTAB-3927:Sample 15

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 15


E-MTAB-3927:Sample 16

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3927:Sample 16

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 16


E-MTAB-3927:Sample 2

characteristic: INSDC center name

text: public

text: E-MTAB-3927:Sample 2

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 2


E-MTAB-3927:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3927:Sample 3

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 3


E-MTAB-3927:Sample 4

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-3927:Sample 4

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 4


E-MTAB-3927:Sample 5

text: public

characteristic: SRA accession

text: E-MTAB-3927:Sample 5

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 5

characteristic: title


E-MTAB-3927:Sample 6

characteristic: INSDC last update

text: public

text: E-MTAB-3927:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-3927:Sample 7

text: public

characteristic: INSDC status

text: E-MTAB-3927:Sample 7

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 7


E-MTAB-3927:Sample 8

text: public

text: E-MTAB-3927:Sample 8

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: development stage

text: 420-CEN3 x met1-3/+ F1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-3927:Sample 9

text: public

text: E-MTAB-3927:Sample 9

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: 420-CEN3 x met1-3/+ F1

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 9


text: Yeast

characteristic: ArrayExpress-Phenotype

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

tag: Namespace:CRUK Cambridge Institute University of Cambridge

text: ArrayExpress

text: naked mole-rat

characteristic: common name

text: Protocols: For fresh specimens, hepatocytes were prepared by direct perfusion of the liver with buffered salt solution, followed by cross-linking of the diced tissue in 1% formaldehyde solution for 20 minutes, addition of 250 mM glycine and incubation for a further 10 minutes to neutralize the formaldehyde. Liver samples from frozen specimens were powdered while frozen by using a mortar and pestle on dry-ice, and the powdered frozen tissue was subsequently cross-linked as described above. After homogenization of cross-linked liver tissue in a dounce tissue grinder, hepatocytes were rinsed with PBS and lysed according to published protocols {Schmidt, 2009} to solubilize DNA-protein complexes. Chromatin was fragmented to 300 bp average size by sonication on a misonix sonicator 3000 with a 418 tip. Chromatin from 0.1 g of dounced liver tissue was used for each ChIP experiment using antibodies against H3K4me3 (millipore 05-1339), H3K27ac (abcam ab4729), H3K4me1 (abcam ab8895) or total histone H3 (abcam ab1791), and automated 96-well protocols in an Agilent Bravo liquid handling robot {Aldridge, 2013}. Step 1: Attachment of antibody to Protein G beads. 25μl of Protein G Dynabeads (Invitrogen) per ChIP were washed with a 0.5%BSA/PBS solution followed by addition of 2.5 (H3K4me3, total histone H3) or 5μg (H3K27ac, H3K4me1) of antibody. The plate was sealed and transferred to 4oC and mixed for a minimum of four hours on an orbital shaker (Grant-bio, PMS1000). Step 2: Wash and addition of lysate. Antibody bound protein G beads were washed in 0.5%BSA/PBS solution and 180 μl of the sonicated lysates were added to the prepared beads. The plate was returned to a 4C cold room for overnight immunoprecipitation. Step 3: Wash of DNA bound beads. ChIP-DNA bound beads were washed ten times in 180 μl cold RIPA solution, and immunoprecipitated DNA was eluted in 50 μl elution buffer and transferred to rigid PCR 96-well plates for crosslink-reversal in a 65C thermal cycle for a minimum of five hours. Step 4: Removal of beads, RNase and Proteinase K treatment. 50 μl of TE was added to beads to dilute SDS in elution buffer. 2 μl RNase (Invitrogen, AM2269) was added to eluted ChIP-DNA and incubated on Bravo deck at 37C for 30 minutes, followed by 2 μl of Proteinase K treatment (Invitrogen, AM2548) at 55C for 1-2 hours. Step 5: Purification of DNA. Phenol and Ethanol precipitation was replaced with an Ampure Bead (Beckman Coulter, A63881) clean up step. 180μl of SPRI beads (1.8 times volume) were added to the DNA followed by two 70% ethanol washes. DNA eluted in 50 μl EB buffer was used for library preparation. CEBPA chromatin immunoprecipitations were carried out with a manual version of the above protocol, using 0.1-0.5g of liver tissue and 10 ug of antibody sc-9314 (Santa Cruz Biotechnology). Illumina sequencing libraries were prepared from ChIP-enriched DNA in 96 well microtitre plates using automated liquid handling robotic platforms. Pre-PCR library preparation steps were carried out using a Beckman Fxp dual arm instrument with cytomat microplate hotel. Briefly, 50μl of ChIP DNA was purified by binding to twice the volume of AMPure XP beads (Beckman Coulter, Inc.) and eluted in 30μl of 10mM Tris-HCl, pH8.5. End-repair, A-tailing and paired-end adapter ligation were performed using NEBnext reagents from New England Biolabs (E6000S), with purification using a 1:1 ratio of AMPure XP to sample between each reaction. Illumina adapters were used at a final concentration of 20pM (a 1:20 dilution of our standard library adapter concentration) to reduce adapter dimer formation. After ligation, excess adapters and adapter dimers were removed using two Ampure XP clean-ups, first with a 0.7:1 ratio of standard Ampure XP to sample, followed by a 1:1 ratio, with elution in eluted in 30μl of 10mM Tris-HCl, pH8.5. 10μl of this adapter ligated material was then used as template for PCR amplification with Kapa HiFi 2 x mastermix (Kapa Biosystems KK2602) with 200nM final concentration of standard PE1.0 and modified multiplexing PE2.0 primers. After PCR setup on the Beckman Fxp , PCR reactions were cycled on an MJ Tetrad thermal cycler with the following conditions: 94°C -2 minutes; 10-15 cycles of 94°C -20 seconds, 65°C -30 seconds, 72°C -30 seconds; 72°C - 3 minutes. 10 cycles were used input DNA (500 ng) and 15 cycles for ChIP DNA. After PCR, excess primers and any primer dimers were removed by performing a 0.7:1 Ampure XP clean-up on a Caliper Zephyr liquid handler with elution in 30μl of 10mM Tris-HCl, pH8.5. Libraries were pooled in equal volume and the concentration of that pool determined by real-time PCR using the SYBR Fast Illumina Library Quantification Kit (Kapa Biosystems) before sequencing on an Illumina MiSeq, 50 cycles single end plus index read, to determine the relative representation of each barcoded library. Based on this data the library pool was reblended so as to give equal representation of each library, and requantified by real time PCR as above, before sequencing on an Illumina HiSeq 2000 for 50 cycles single end, plus index read.

text: adult

characteristic: developmental stage

characteristic: individual

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: liver

text: Heterocephalus glaber

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

text: CRUK Cambridge Institute University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: northern tree shrew

text: adult

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: northern tree shrew

characteristic: description

text: juvenile

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

characteristic: organism part

text: Tupaia belangeri

text: male

text: fresh specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: northern tree shrew

characteristic: common name

text: adult

characteristic: developmental stage

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: female

text: fresh specimen


text: public

text: ArrayExpress

text: naked mole-rat

text: adult

characteristic: individual

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: liver

text: Heterocephalus glaber

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Diesel

text: Macaca mulatta

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Rhesus monkey

text: adult

text: Blues

text: Macaca mulatta

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: saddleback dolphin

characteristic: description

text: adult

text: Delphinus delphis

text: Delphinus delphis

text: liver

characteristic: organism part

text: Delphinus delphis

text: male

text: frozen specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: pig

characteristic: common name

text: adult

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: liver

text: Sus scrofa

text: male

text: fresh specimen


text: public

text: ArrayExpress

text: gray short-tailed opossum

text: juvenile

characteristic: individual

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: rabbit

text: adult

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: liver

text: Oryctolagus cuniculus

text: male

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domestic guinea pig

text: adult

text: Cavia porcellus

text: Cavia porcellus

text: liver

text: Cavia porcellus

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: small-eared galago

characteristic: description

text: adult

text: Otolemur garnettii

text: Otolemur garnettii

text: liver

characteristic: organism part

text: Otolemur garnettii

text: male

text: frozen specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: dog

characteristic: common name

text: juvenile

characteristic: developmental stage

text: Canis lupus familiaris

text: Canis familiaris

text: liver

text: Canis lupus familiaris

text: male

text: fresh specimen


text: public

text: ArrayExpress

text: dog

text: adult

characteristic: individual

text: Canis lupus familiaris

characteristic: organism

text: Canis familiaris

text: liver

text: Canis lupus familiaris

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Tasmanian devil

text: adult

text: Mariah

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: liver

text: Sarcophilus harrisii

text: female

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Tasmanian devil

text: adult

text: Montgomery

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: liver

text: Sarcophilus harrisii

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: domestic cat

characteristic: description

text: adult

text: Felis catus

text: Felis catus

text: liver

characteristic: organism part

text: Felis catus

text: female

text: fresh specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: domestic ferret

characteristic: common name

text: adult

characteristic: developmental stage

text: Mustela putorius furo

text: Mustela putorius furo

text: liver

text: Mustela putorius furo

text: male

text: fresh specimen


text: public

text: ArrayExpress

text: domestic ferret

text: juvenile

characteristic: individual

text: Mustela putorius furo

characteristic: organism

text: Mustela putorius furo

text: liver

text: Mustela putorius furo

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: white-tufted-ear marmoset

text: adult

text: Callithrix jacchus

text: Callithrix jacchus

text: liver

text: Callithrix jacchus

text: male

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: adult

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

text: Rattus norvegicus

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: Sowerby's beaked whale

characteristic: description

text: juvenile

text: Mesoplodon bidens

text: Mesoplodon bidens

text: liver

characteristic: organism part

text: Mesoplodon bidens

text: female

text: frozen specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: sei whale

characteristic: common name

text: juvenile

characteristic: developmental stage

text: Balaenoptera borealis

text: Balaenoptera borealis

text: liver

text: Balaenoptera borealis

text: female

text: frozen specimen


text: public

text: ArrayExpress

text: naked mole-rat

text: adult

characteristic: individual

text: Heterocephalus glaber

characteristic: organism

text: Heterocephalus glaber

text: liver

text: Heterocephalus glaber

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: domestic cat

text: adult

text: Felis catus

text: Felis catus

text: liver

text: Felis catus

text: male

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: northern tree shrew

text: adult

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: northern tree shrew

characteristic: description

text: juvenile

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

characteristic: organism part

text: Tupaia belangeri

text: male

text: fresh specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: rabbit

characteristic: common name

text: juvenile

characteristic: developmental stage

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: liver

text: Oryctolagus cuniculus

text: male

text: fresh specimen


text: public

text: ArrayExpress

text: domestic guinea pig

text: adult

characteristic: individual

text: Cavia porcellus

characteristic: organism

text: Cavia porcellus

text: liver

text: Cavia porcellus

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: dog

text: juvenile

text: Canis lupus familiaris

text: Canis familiaris

text: liver

text: Canis lupus familiaris

text: male

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

text: juvenile

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: Tasmanian devil

characteristic: description

text: adult

text: Mariah

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: liver

characteristic: organism part

text: Sarcophilus harrisii

text: female

text: fresh specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Tasmanian devil

characteristic: common name

text: adult

characteristic: developmental stage

text: Montgomery

text: Sarcophilus harrisii

text: Sarcophilus harrisii

text: liver

text: Sarcophilus harrisii

text: male

text: fresh specimen


text: public

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Diesel

characteristic: individual

text: Macaca mulatta

characteristic: organism

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Blues

text: Macaca mulatta

text: Macaca mulatta

text: liver

text: Macaca mulatta

text: male

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: white-beaked dolphin

text: adult

text: Lagenorhynchus albirostris

text: Lagenorhynchus albirostris

text: liver

text: Lagenorhynchus albirostris

text: female

text: frozen specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: gray short-tailed opossum

characteristic: description

text: juvenile

text: Opossum 11

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

characteristic: organism part

text: Monodelphis domestica

text: male

text: fresh specimen


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: gray short-tailed opossum

characteristic: common name

text: juvenile

characteristic: developmental stage

text: Opossum 12

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

text: fresh specimen


text: public

text: ArrayExpress

text: rabbit

text: adult

characteristic: individual

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: liver

text: Oryctolagus cuniculus

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: northern tree shrew

text: adult

text: Tupaia belangeri

text: Tupaia belangeri

text: liver

text: Tupaia belangeri

text: female

text: fresh specimen


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cattle

text: adult

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: male

text: fresh specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: ICL-CFB

text: public

text: ArrayExpress

text: house mouse

text: Protocols: Pancreatic islets (50-200) were extracted from homozygous and heterozygous R299Q AMPK g2 knock-in mice and their wild type littermate controls aged 11-13 weeks by pancreatic distension and digestion with collagenase. Islets were incubated in RPMI media containing 11 mM glucose, 10% FCS, 100 IU/mL penicillin, 100 Âľg/mL streptomycin, at 5% CO2 and 37 C for 24 h. RNA was extracted with TRIzol (Invitrogen) using the manufacturer's protocol, with the addition of glycogen as a co-precipitate. Resuspended RNA was treated with DNAse I (Invitrogen), which was then heat inactivated. Polyadenylated RNA was purified with oligo-dT beads and the library constructed using the TruSeq Stranded kit (Illumina). Illumina Universal Paired-end adapters were used, and custom barcoding sequences incorporated during the amplification rounds (15 cycles) for multiplexing.

characteristic: description

text: heterozygous R299Q AMPK g2

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

characteristic: organism part

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: ICL-CFB

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: homozygous R299Q AMPK g2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: islet of Langerhans

text: Mus musculus


characteristic: External Id

text: ICL-CFB

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: Mus musculus


characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Vesalius Research Centre, VIB Department of Oncology, KU Leuven

text: ArrayExpress

characteristic: cell line

text: eastern European house mouse

text: Protocols: CELL CULTURE: Neuro 2a (N2A) cells were maintained in Dulbecco Modified Earl Media / Hams F12 supplemented with 10% fetal bovine serum, 1% non-essential amino acids, 2 mM glutamine, 100 U/ml penicillin and 10 μg/ml streptomycin (all from Life Technologies) and 1.6% NaHCO3 solution (Sigma). N2A cells were transfected with Lipofectamine (Life Technologies). Cells were routinely maintained in culture at 37oC, 5% CO2 and 21% O2. RNA libraries were created using the Illumina TruSeq RNA sample preparation kit V2 according to the manufacturer’s instructions.

text: control

characteristic: genetic modification

text: wild type genotype

text: Mus musculus musculus

text: Mus musculus musculus

text: Mus musculus musculus


text: Vesalius Research Centre, VIB Department of Oncology, KU Leuven

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: eastern European house mouse

text: knock out

text: Gpr124 knock out

text: Mus musculus musculus

text: Mus musculus musculus

text: Mus musculus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: eastern European house mouse

characteristic: description

text: control

text: wild type genotype

characteristic: genotype

text: Mus musculus musculus

text: Mus musculus musculus

text: Mus musculus musculus


E-MTAB-3945:Sample 12

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: E-MTAB-3945:Sample 12

tag: Namespace:Institute of Evolutionary Biology and Environmental Studies University of Zurich

text: ArrayExpress

text: Japanese quail

text: Protocols: Sample tissue was taken from egg-laying female quail housed at the University of Zurich. We isolated RNA by homogenizing the tissue in TRIzol followed by DNase treatment and cleanup using Qiagen RNeasy columns according to manufacturer instructions. Libraries were constructed using the llumina TruSeq RNA Stranded mRNA kit according to standard protocols. RNA enrichment was done using the PolyA TrueSeq RNA Kit.

text: Coturnix japonica

text: Coturnix japonica

text: egg

characteristic: organism part

text: large egg

characteristic: phenotype

text: Coturnix japonica

text: female

characteristic: sex

text: Sample 12


E-MTAB-3945:Sample 17

characteristic: External Id

text: Institute of Evolutionary Biology and Environmental Studies University of Zurich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3945:Sample 17

text: ArrayExpress

text: Japanese quail

characteristic: common name

text: Coturnix japonica

characteristic: organism

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 17


E-MTAB-3945:Sample 20

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3945:Sample 20

characteristic: Submitter Id

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 20


E-MTAB-3945:Sample 21

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3945:Sample 21

text: ArrayExpress

characteristic: broker name

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: large egg

text: Coturnix japonica

text: female

text: Sample 21

characteristic: title


E-MTAB-3945:Sample 22

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3945:Sample 22

text: ArrayExpress

text: Japanese quail

characteristic: description

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: large egg

text: Coturnix japonica

text: female

text: Sample 22


E-MTAB-3945:Sample 23

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: E-MTAB-3945:Sample 23

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 23


E-MTAB-3945:Sample 27

text: public

text: E-MTAB-3945:Sample 27

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

characteristic: organism part

text: large egg

characteristic: phenotype

text: Coturnix japonica

text: female

text: Sample 27


E-MTAB-3945:Sample 30

characteristic: External Id

text: public

text: E-MTAB-3945:Sample 30

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: large egg

text: Coturnix japonica

text: female

characteristic: sex

text: Sample 30


E-MTAB-3945:Sample 32

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3945:Sample 32

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: large egg

text: Coturnix japonica

text: female

text: Sample 32


E-MTAB-3945:Sample 37

text: public

text: E-MTAB-3945:Sample 37

text: ArrayExpress

text: Japanese quail

characteristic: common name

text: Coturnix japonica

characteristic: organism

text: Coturnix japonica

text: egg

text: large egg

text: Coturnix japonica

text: female

text: Sample 37


E-MTAB-3945:Sample 46

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3945:Sample 46

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 46


E-MTAB-3945:Sample 48

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3945:Sample 48

characteristic: Submitter Id

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 48


E-MTAB-3945:Sample 50

text: public

text: E-MTAB-3945:Sample 50

text: ArrayExpress

characteristic: broker name

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: large egg

text: Coturnix japonica

text: female

text: Sample 50

characteristic: title


E-MTAB-3945:Sample 55

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3945:Sample 55

text: ArrayExpress

text: Japanese quail

characteristic: description

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 55


E-MTAB-3945:Sample 59

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: E-MTAB-3945:Sample 59

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

text: small egg

text: Coturnix japonica

text: female

text: Sample 59


E-MTAB-3945:Sample 9

text: public

text: E-MTAB-3945:Sample 9

text: ArrayExpress

text: Japanese quail

text: Coturnix japonica

text: Coturnix japonica

text: egg

characteristic: organism part

text: small egg

characteristic: phenotype

text: Coturnix japonica

text: female

text: Sample 9


characteristic: External Id

text: public

tag: Namespace:Department of Cell and Molecular Biology, Karolinska Institutet

text: ArrayExpress

characteristic: cell

text: human

text: Protocols: Human embryos were obtained from two cohorts at the Huddinge Karolinska Hospital. The first cohort was from preimplantation genetic diagnosis (PGD) testing on embryonic day (E) 4 and cultured until E7 (expanded blastocyst, just prior to implantation) under standard conditions as performed in the IVF Clinic (5% CO2/5%O2 in IVF plates containing 700_l of CCMTM media (Vitrolife) covered with 300_l of OvoilTM (Vitrolife)). The second cohort was from frozen E2 embryos thawed (ThawKit� Cleave, VitroLife) and cultured in G-1� Plus media (VitroLife) until E3 and then transferred to CCM� media (VitroLife) from E3-E7. Embros were dissociated into single cells by the use of enzymatic (TrypLE) and mechanical separation, and then handpicked with fine glass capillaries by mouth pipetting. Single blastomemeres were directly dispensed into into individual wells of a 8-strip tube containing lysis buffer. Picelli et al, Full-length RNA-seq from single cells using Smart-seq2, Nature Protocols, 2014

text: embryonic day 3

characteristic: developmental stage

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

characteristic: single cell well quality

text: No

characteristic: treatment


text: Department of Cell and Molecular Biology, Karolinska Institutet

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: common name

text: embryonic day 3

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

text: No


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: embryonic day 4

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

characteristic: title

text: No


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: cell

text: human

text: embryonic day 4

text: Homo sapiens

text: Homo sapiens

text: embryo

characteristic: organism part

text: Uncompacted

characteristic: phenotype

text: Homo sapiens

text: OK

text: No


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: embryonic day 4

characteristic: developmental stage

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Compacted

text: Homo sapiens

text: OK

characteristic: single cell well quality

text: No

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: common name

text: embryonic day 5

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

text: No


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: embryonic day 5

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

characteristic: title

text: Immunosurgery


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: cell

text: human

text: embryonic day 6

text: Homo sapiens

text: Homo sapiens

text: embryo

characteristic: organism part

text: Homo sapiens

text: OK

text: No


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

text: embryonic day 6

characteristic: developmental stage

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

characteristic: single cell well quality

text: Immunosurgery

characteristic: treatment


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

characteristic: common name

text: embryonic day 7

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

text: Immunosurgery


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: embryonic day 7

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens

text: OK

text: No


E-MTAB-3926:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3926:Sample 1

text: ArrayExpress

text: thale cress

text: Protocols: Plants were grown at 20°C, 60% humidity with a long day photoperiod (16 hours light) and light intensity of 150 μmols. We applied a method to identify crossovers from low coverage (~0.5-2×) sequencing, using 96 barcoded genomic DNA libraries generated from recombinant individuals (Rowan et al. 2015), with the following modifications. DNA was digested with 0.3 units of dsDNA Shearase (Zymo Research) in a final volume of 15 l. The resulting DNA fragments were end-repaired with 3 units of T4 DNA polymerase (New England Biolabs), 10 units of T4 polynucleotide kinase (Thermo Fisher Scientific) and 1.25 units of Klenow Fragment (New England Biolabs), in the presence of 0.4 mM dNTPs in a reaction volume of 30 l for 30 min at 20 oC. DNA fragments were cleaned as described (Rowan et al. 2015), and the protocol followed until the DNA fragment size selection step. To size-select, following barcoded Illumina adaptor ligation, 30 l of a mixture of eight concentrated DNA libraries were combined in a tube containing 48 l of a 1:1 mix of AMPure XP magnetic SPRI beads (Beckman-Coulter. Hereafter, SPRI beads) in water. After 5 minutes incubation at room temperature, the samples were placed on a magnetic rack and allowed to clear before supernatant was transferred to a fresh tube and mixed with 0.12 volumes of undiluted SPRI beads. After 5 minutes incubation at room temperature, the tubes were placed on a magnetic rack and allowed to clear. The supernatants were discarded and the beads washed twice with 80% ethanol. DNA was eluted in 20 l of 10 mM Tris, pH 8.0. 12 l of the eluate was used for PCR amplification in a reaction volume of 50 l using KAPA HiFi HotStart ReadyMIx PCR Kit (Kapabiosystems) and the reported DNA oligonucleotides (Rowan et al. 2015). 12 cycles of amplification were performed and PCR products were then purified on SPRI beads (1× ratio) and quantified with a Bioanalyzer.

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 1

characteristic: title


E-MTAB-3926:Sample 10

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3926:Sample 10

text: ArrayExpress

text: thale cress

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-3926:Sample 100

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 100

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 100


E-MTAB-3926:Sample 101

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 101

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 101


E-MTAB-3926:Sample 102

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 102

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 102


E-MTAB-3926:Sample 103

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 103

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 103


E-MTAB-3926:Sample 104

text: public

text: E-MTAB-3926:Sample 104

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 104


E-MTAB-3926:Sample 105

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 105

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 105


E-MTAB-3926:Sample 106

characteristic: INSDC last update

text: public

text: E-MTAB-3926:Sample 106

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 106


E-MTAB-3926:Sample 107

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3926:Sample 107

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 107

characteristic: title


E-MTAB-3926:Sample 108

text: public

text: E-MTAB-3926:Sample 108

text: ArrayExpress

text: thale cress

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 108


E-MTAB-3926:Sample 109

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 109

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 109


E-MTAB-3926:Sample 11

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 11

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 11


E-MTAB-3926:Sample 110

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 110

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 110


E-MTAB-3926:Sample 111

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 111

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 111


E-MTAB-3926:Sample 112

text: public

text: E-MTAB-3926:Sample 112

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 112


E-MTAB-3926:Sample 113

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 113

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 113


E-MTAB-3926:Sample 114

characteristic: INSDC last update

text: public

text: E-MTAB-3926:Sample 114

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 114


E-MTAB-3926:Sample 115

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3926:Sample 115

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 115

characteristic: title


E-MTAB-3926:Sample 116

text: public

text: E-MTAB-3926:Sample 116

text: ArrayExpress

text: thale cress

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 116


E-MTAB-3926:Sample 117

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 117

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 117


E-MTAB-3926:Sample 118

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 118

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 118


E-MTAB-3926:Sample 119

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 119

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 119


E-MTAB-3926:Sample 12

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-3926:Sample 120

text: public

text: E-MTAB-3926:Sample 120

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 120


E-MTAB-3926:Sample 121

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 121

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 121


E-MTAB-3926:Sample 122

characteristic: INSDC last update

text: public

text: E-MTAB-3926:Sample 122

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 122


E-MTAB-3926:Sample 123

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3926:Sample 123

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 123

characteristic: title


E-MTAB-3926:Sample 124

text: public

text: E-MTAB-3926:Sample 124

text: ArrayExpress

text: thale cress

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 124


E-MTAB-3926:Sample 125

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 125

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 125


E-MTAB-3926:Sample 126

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 126

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 126


E-MTAB-3926:Sample 127

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 127

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 127


E-MTAB-3926:Sample 128

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 128

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 128


E-MTAB-3926:Sample 129

text: public

text: E-MTAB-3926:Sample 129

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 129


E-MTAB-3926:Sample 13

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 13

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 13


E-MTAB-3926:Sample 130

characteristic: INSDC last update

text: public

text: E-MTAB-3926:Sample 130

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 130


E-MTAB-3926:Sample 131

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3926:Sample 131

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 131

characteristic: title


E-MTAB-3926:Sample 132

text: public

text: E-MTAB-3926:Sample 132

text: ArrayExpress

text: thale cress

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 132


E-MTAB-3926:Sample 133

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 133

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 133


E-MTAB-3926:Sample 134

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 134

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 134


E-MTAB-3926:Sample 135

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 135

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 135


E-MTAB-3926:Sample 136

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 136

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 136


E-MTAB-3926:Sample 137

text: public

text: E-MTAB-3926:Sample 137

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 137


E-MTAB-3926:Sample 138

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 138

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 138


E-MTAB-3926:Sample 139

characteristic: INSDC last update

text: public

text: E-MTAB-3926:Sample 139

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 139