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text: VZV_BAC_1-sc-2011-11-23T17:11:47Z-1145475

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text: Epstein-Barr virus

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text: public

text: VZV_BERG_10-sc-2011-11-23T17:11:59Z-1145486

text: Varicella-zoster virus

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text: public

text: EBV_saliva8-sc-2011-11-23T17:10:49Z-1018221

text: Epstein-Barr virus

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text: public

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text: Epstein-Barr virus

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text: SC

text: public

text: VZV_BERG_1-sc-2011-11-23T17:11:49Z-1145477

text: Varicella-zoster virus

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text: SC

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text: SC

text: public

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text: Varicella-zoster virus

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text: SC

text: public

text: EBV_Mak_1-sc-2011-11-23T17:12:44Z-1165640

text: Epstein-Barr virus

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text: SC

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text: Varicella-zoster virus

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text: Epstein-Barr virus

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text: Epstein-Barr virus

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text: public

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text: Varicella-zoster virus

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text: public

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text: Varicella-zoster virus

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text: SC

text: public

text: KSHV_BC3-sc-2011-11-23T17:10:36Z-1011368

text: Human herpesvirus 8

text: KSHV from BC-3 PEL lysate

text: Human herpesvirus 8


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_DaWo-sc-2011-11-23T17:12:24Z-1165621

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_MiBa-sc-2011-11-23T17:12:32Z-1165629

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV IM sample

text: Human herpesvirus 4


text: Human herpesvirus 3

text: SC

text: public

text: VZV_A185g-sc-2011-11-23T17:11:43Z-1145472

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 4

text: SC

text: public

text: EBV_Akata_2000-sc-2011-11-23T17:12:43Z-1165639

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from Akata cell line

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_Daudi-sc-2011-11-23T17:12:54Z-1165650

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from Daudi cell line

text: Human herpesvirus 4


text: Human herpesvirus 3

text: SC

text: public

text: VZV_BERG_4-sc-2011-11-23T17:11:52Z-1145480

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 8

text: SC

text: public

text: KSHV_CROAP6-sc-2011-11-23T17:12:56Z-1165651

text: Human herpesvirus 8

text: KSHV from CROAP6 PEL cell line lysate

text: Human herpesvirus 8


text: Human herpesvirus 4

text: SC

text: public

text: EBV_saliva4-sc-2011-11-23T17:10:52Z-1018224

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from saliva 4

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_Daudi_SN-sc-2011-11-23T17:10:31Z-1011363

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from Daudi BL cell line supernatant

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV whole genome sequencing

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_GaAc-sc-2011-11-23T17:12:36Z-1165633

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV IM sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_JaCl-sc-2011-11-23T17:12:20Z-1165617

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_YeJe-sc-2011-11-23T17:12:41Z-1165638

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 3

text: SC

text: public

text: VZV_CSF_1g-sc-2011-11-23T17:11:19Z-1145449

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 4

text: SC

text: public

text: EBV_JHL_post-sc-2011-11-23T17:12:03Z-1165601

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 3

text: SC

text: public

text: VZV_BAC_2-sc-2011-11-23T17:11:39Z-1145469

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 3

text: SC

text: public

text: VZV_BERG_5-sc-2011-11-23T17:11:54Z-1145481

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 4

text: SC

text: public

text: EBV_JSC1-sc-2011-11-23T17:10:38Z-1011370

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from JSC-1 PEL lysate

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_IsGe-sc-2011-11-23T17:12:35Z-1165632

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_MiFa-sc-2011-11-23T17:12:39Z-1165636

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV IM sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_Akata_SN-sc-2011-11-23T17:10:36Z-1011362

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from Akata BL cell line supernatant

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_AlSt-sc-2011-11-23T17:12:21Z-1165618

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_saliva2-sc-2011-11-23T17:12:06Z-1165604

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from saliva 2

text: Human herpesvirus 4


text: Human herpesvirus 3

text: SC

text: public

text: VZV_BAC_g1-sc-2011-11-23T17:11:20Z-1145450

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_MarDe-sc-2011-11-23T17:12:34Z-1165631

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_HBL6_SN-sc-2011-11-23T17:10:29Z-1011361

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV from HBL-6 PEL cell line supernatant

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: EBV_sLCL_ReDo-sc-2011-11-23T17:12:40Z-1165637

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: Human herpesvirus 4

text: SC

text: public

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV whole genome sequencing

text: Human herpesvirus 4


text: Human herpesvirus 3

text: SC

text: public

text: VZV_BERG_6-sc-2011-11-23T17:11:55Z-1145482

text: Varicella-zoster virus

text: Human herpesvirus 3

text: VZV whole genome sequencing

text: Human herpesvirus 3


text: Human herpesvirus 4

text: SC

text: public

text: EBV_TRL595-sc-2011-11-23T17:12:04Z-1165602

text: Epstein-Barr virus

text: Human herpesvirus 4

text: EBV PTLD sample

text: Human herpesvirus 4


text: SC

text: public

text: Echinococcus multilocularis

text: fox origin

text: Echinococcus multilocularis


text: SC

text: public

text: Echinococcus multilocularis

text: experimental dog infection

text: Echinococcus multilocularis


text: SC

text: public

text: MetaVesicles_LateBC-sc-2010-10-19-991083

text: Echinococcus

text: Echinococcus


text: Anopheles arabiensis

text: SC

text: public

text: Southern African malaria mosquito

text: Anopheles arabiensis

text: Anopheles arabiensis


text: public

characteristic: StrainOrLine

tag: Namespace:Institute for Molecular Biology and Tumor Research

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblasts

characteristic: cell line

text: house mouse

text: Protocols: MEFs were maintained at 37 degrees celcius in 50 % DMEM High Glucose and 50 % Ham's F10 Medium (PAA) supplemented with 10% fetal bovine serum (PAA) and 1X Penicillin and Streptomycin (PAA). ChIP-qPCR experiments were performed essentially as described previously (Stielow et al., 2008, see below) using the OneDay ChIP kit (Diagenode) according to the manufacturer's instructions. Briefly, MEFs and HEK293 cells were incubated with 1% formaldehyde for 10 min at room temperature followed by quenching with 150 mM glycine for 5 min. After sonification, 100 microgram of chromatin was used for single immunoprecipitations using 2 microgram of self-made Sp2 antibody (Baur et al., 2010). Ten immunoprecipitations were pooled for ChIP-seq and purified by the QIAquick PCR Purification kit (Qiagen). 10 ng of inmunoprecipitated DNA fragments were subjected to paired-end sequencing on an Illumina IIx Genome Ananlyzer. Stielow, B., et al. (2008). SUMO-modified Sp3 represses transcription by provoking local heterochromatic gene silencing. EMBO Rep 9, 899-906.

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title

type: has member


characteristic: ENA-FIRST-PUBLIC

text: Institute for Molecular Biology and Tumor Research

text: public

text: ArrayExpress

text: human

text: Protocols: HEK cells were maintained at 37 degrees celcius in DMEM-Ham's F12 Medium (PAA) supplemented with 10% fetal bovine serum (PAA) and 1X Penicillin and Streptomycin (PAA). ChIP-qPCR experiments were performed essentially as described previously (Stielow et al., 2008, see below) using the OneDay ChIP kit (Diagenode) according to the manufacturer's instructions. Briefly, MEFs and HEK293 cells were incubated with 1% formaldehyde for 10 min at room temperature followed by quenching with 150 mM glycine for 5 min. After sonification, 100 microgram of chromatin was used for single immunoprecipitations using 2 microgram of self-made Sp2 antibody (Baur et al., 2010). Ten immunoprecipitations were pooled for ChIP-seq and purified by the QIAquick PCR Purification kit (Qiagen). 10 ng of inmunoprecipitated DNA fragments were subjected to paired-end sequencing on an Illumina IIx Genome Ananlyzer. Stielow, B., et al. (2008). SUMO-modified Sp3 represses transcription by provoking local heterochromatic gene silencing. EMBO Rep 9, 899-906.

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: mouse embryonic fibroblasts

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: Wildtype

characteristic: ArrayExpress-Genotype

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC center name

text: public

text: oocyteFraction_strand_specific-sc-2012-12-18T11:01:05Z-1528879

text: zebrafish

text: Danio rerio

text: RNA from oocytes

characteristic: sample description

text: Danio rerio

text: T/LF

characteristic: strain


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany

characteristic: Submitter Id

text: Caliper Life Science (Mainz, Germany)

characteristic: biosourceprovider

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Cells were obtained from Caliper Life Science (Mainz, Germany) and cultured in DMEM (PPA, Coelbe, Germany) supplemented with 10% fetal bovine serum, 100 U/ml penicillin and 100 microgram/ml streptomycin in a humidified incubator at 37 degrees Celcius and 5% CO2.

text: breast carcinoma

characteristic: disease state

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK

text: public

tag: Namespace:Cancer Research UK

text: 2-6 month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: doi:10.1016/j.ymeth.2009.03.001; Shortly, liver material was crosslinked in 1% formaldehyde for 20 minutes followed by a 10 minute incubation in 500 mM glycine buffer to neutralize the formaldehyde. Samples were rinsed with PBS and frozen until use. Human material was obtained from Addenbrooke??s Hospital, Cambridge licence (08/H0308/117) and the Liver Tissue Distribution Program at the University of Pittsburgh (NIDDK Contract # N01-DK-9-2310). Formaldehyde-crosslinked/flash frozen tissue was stored at ??80C at the CRI. Tc1 mice (annotated as Tc1_with_hschr21) were generated as described in (O??Doherty et al., 2005). Mice were initially obtained from Victor Tybulewic and Elizabeth Fisher and subsequently housed and bred within the Biological Resources Unit at CRI. Tc0 mice (annotated as Tc1_without_hschr21) are Tc1 sibling mice (ie the same genetic background) that have not inherited a copy of HsChr21.

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: Cancer Research UK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2-6 month

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: testes

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK

text: public

characteristic: Submitter Id

text: 74 year

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: wild type

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

text: Cancer Research UK

text: public

text: 2-6 month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male


text: Cancer Research UK

text: public

text: NA year

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female


text: Clostridium hathewayi

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Hungatella hathewayi

text: Hungatella hathewayi


text: Clostridium difficile

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 078_NET_039-sc-2012-05-10T19:51:45Z-1415526

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Escherichia coli

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia coli

text: Escherichia coli


text: Clostridium difficile

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 078_NET_048-sc-2012-05-10T19:51:53Z-1415535

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium indolis

text: SC

text: public

text: [Clostridium] indolis

text: [Clostridium] indolis


text: Lactonifactor longoviformis

text: SC

text: public

text: Lactonifactor longoviformis

text: Lactonifactor longoviformis


text: Clostridium disporicum

text: SC

text: public

text: Clostridium disporicum

text: Clostridium disporicum


text: Clostridium innocuum

text: SC

text: public

text: [Clostridium] innocuum

text: [Clostridium] innocuum


text: Clostridium paraputrificum

text: SC

text: public

text: Clostridium paraputrificum

text: Clostridium paraputrificum


text: Ruminococcus gnavus

text: SC

text: public

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus


text: Clostridium nexile

text: SC

text: public

text: Tyzzerella nexilis

text: Tyzzerella nexilis


text: Clostridium perfringens

text: SC

text: public

text: Clostridium perfringens

text: Clostridium perfringens


text: Homo sapiens

text: SC

text: public

text: SC_GMFUL5306362_WGA_noPCR-sc-2012-10-25T14:20:43Z-1503451

text: human

characteristic: common name

text: Homo sapiens

text: WGA test

characteristic: sample description

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: SC_GMFUL5306370_WGA_noPCR-sc-2012-10-25T14:20:44Z-1503452

text: human

text: Homo sapiens

text: WGA test

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: SC_GMFUL5306378_WGA_noPCR-sc-2012-10-25T14:20:46Z-1503453

text: human

text: Homo sapiens

text: WGA test

text: Homo sapiens


text: Eubacterium hadrum

text: SC

text: public

text: Anaerostipes hadrus

text: Anaerostipes hadrus


text: Clostridium ramosum

text: SC

text: public

text: Erysipelatoclostridium ramosum

text: Erysipelatoclostridium ramosum


text: Clostridium difficile

text: SC

text: public

text: 078_GUE_043-sc-2012-05-10T19:53:02Z-1415614

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium saccharolyticum

text: SC

text: public

text: [Clostridium] saccharolyticum

text: [Clostridium] saccharolyticum


text: Clostridium scindens

text: SC

text: public

text: [Clostridium] scindens

text: [Clostridium] scindens


text: Blautia producta

text: SC

text: public

text: Blautia producta

text: Blautia producta


text: Clostridium difficile

text: SC

text: public

text: AgrA_MM_12-sc-2012-05-10T19:53:58Z-1415678

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium aldenense

text: SC

text: public

text: [Clostridium] aldenense

text: [Clostridium] aldenense


text: Clostridium bolteae

text: SC

text: public

text: [Clostridium] bolteae

text: [Clostridium] bolteae


text: Clostridium orbiscindens

text: SC

text: public

text: Flavonifractor plautii

text: Flavonifractor plautii


text: Clostridium butyricum

text: SC

text: public

text: Clostridium butyricum

text: Clostridium butyricum


text: Roseburia inulinivorans

text: SC

text: public

text: Roseburia inulinivorans

text: Roseburia inulinivorans


text: Clostridium clostridioforme

text: SC

text: public

text: [Clostridium] clostridioforme

text: [Clostridium] clostridioforme


text: Ruminococcus torques

text: SC

text: public

text: [Ruminococcus] torques

text: [Ruminococcus] torques


text: Clostridium disporicum

text: SC

text: public

text: Clostridium disporicum

text: Clostridium disporicum


text: Clostridium lavalense

text: SC

text: public

text: [Clostridium] lavalense

text: [Clostridium] lavalense


text: Flavonifractor plautii

text: SC

text: public

text: Flavonifractor plautii

text: Flavonifractor plautii


text: Clostridium difficile

text: SC

text: public

text: 078_NET_083-sc-2012-05-10T19:52:24Z-1415569

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Turicibacter sanguinis

text: SC

text: public

text: Turicibacter sanguinis

text: Turicibacter sanguinis


text: Ruminococcus gnavus

text: SC

text: public

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus


text: Anaerotruncus colihominis

text: SC

text: public

text: Anaerotruncus colihominis

text: Anaerotruncus colihominis


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli


text: Anaerostipes caccae

text: SC

text: public

text: Anaerostipes caccae

text: Anaerostipes caccae


text: Clostridium difficile

text: SC

text: public

text: 078_LVP_024-sc-2012-05-10T19:53:23Z-1415638

text: Peptoclostridium difficile

text: Peptoclostridium difficile


E-MTAB-1117:embryo 1

text: GeneCore EMBL

text: public

text: wild-type (2202U2)

characteristic: StrainOrLine

text: E-MTAB-1117:embryo 1

tag: Namespace:GeneCore EMBL

text: 0 day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fruit fly

text: Flies were kept on standard media at 25C. 1-3 days old flies were collected and frozen in liquid nitrogen at the same time of the day. Frozen flies were stored at -80C until used for chromatin preparation. The following strains were used for ChIP experiments: 2202U2 (wild-type), elav-GAL4 (Bloomington stock no. 458), repo-GAL4 (Sepp, 2001), take-out-GAL4 (Dauwalder, 2002), UAS-EGFP-RPB3 (Yao et al., 2006), UAS-H2Av-GFP, gH2Av-GFP. Details of generating the latter two strains is available upon request. Fly strains used for sequencing experiments were backcrossed to 2202U2 at least for 4-6 generations. Heads of frozen flies were separated using 630 um and 400 um sieves. 400-600 fly heads were homogenized in homogenization buffer (HB) at 4C (HB: 350 mM sucrose, 15 mM HEPES pH 7.6, 10 mM KCl, 5 mM MgCl2, 0.5 mM EGTA, 0.1 mM EDTA, 0.1% Tween, freshly completed with 1mM DTT and Protease Inhibitor Cocktail (PIC)(Roche)). The homogenate was fixed using 1% formaldehyde for 10 minutes at room temperature. The tissue debris was filtered with 60 um nylon net (Millipore). Nuclei were collected and washed with RIPA buffer at 4C (RIPA: 150 mM NaCl, 25 mM HEPES pH 7.6, 1 mM EDTA, 1% Triton-X, 0.1% SDS, 0.1% DOC, freshly completed with PIC). For the fragmentation of chromatin a 2 step sonication was used: Branson250 (7 cycles, intensity 5, pulsing 16 sec) and Covaris sonicator (PIP175, DC20, CB20, time 4 min). After sonication debris was collected and chromatin was stored at -80C. Fragment size was checked after cross-link reversal on agarose gel. 10-15 ug chromatin was used per IP. Dynabeads protein G (Invitrogen) were equilibrated in RIPA with 1 ug/ul salmon sperm DNA and 1 ug/ul BSA. Chromatin was always pre-absorbed with beads without antibody. The cleared chromatin was incubated with antibodies overnight. The following antibodies were used for ChIP in this study: anti-GFP (goat, Ladurner lab stock), anti- RPB3 ((Adelman et al., 2006) and Ladurner lab stock), anti-RPB1 (7G5, Euromedex) anti-H2Av and anti-H2A (Leach, 2000), anti-H3 (abcam 1791). After IP, beads were washed 4-times with RIPA and once with LiCl wash buffer (250 mM LiCl, 10 mM Tris-Hcl pH 8.0, 1 mM EDTA, 0.5% NP-40, 0.5% DOC, freshly added PIC). Beads were resuspended in TE buffer and incubated overnight at 65 C. RNA was degraded using RNase A (Fermentas) 30 min at 37 C and proteins were digested with protease K (10 mg/ml) at 55C for 1.5 hours. Immunoprecipitated DNA was purified using Qiagen MiniElute columns and 3-10 ng DNA was sent for sequencing. In some cases, more technical replicates had to be pooled in order to obtain the required amounts. ChIP on embryos was carried as described previously (Sandmann et al., 2007). Briefly, 0-6 hours embryos were collected and washed with PBST 3% Triton-X, dechorionated with 3% Na Hypochlorite, fixed with formaldehyde and heptane. After quenching the fixing, the embryos were washed, frozen in liquid nitrogen and stored at -80C. Chromatin preparation from fixed, frozen embryos was continued with homogenization as described above.

characteristic: description

text: embryo

text: Drosophila melanogaster

text: Drosophila melanogaster

text: embryo

characteristic: organism part

text: Drosophila melanogaster

text: embryo 1

characteristic: title


E-MTAB-1117:adult head elav-H2Av 2

characteristic: External Id

text: GeneCore EMBL

text: public

text: elav-GAL4, UAS-H2Av-GFP

text: E-MTAB-1117:adult head elav-H2Av 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

characteristic: developmental stage

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: head (neurons)

text: Drosophila melanogaster

text: adult head elav-H2Av 2


E-MTAB-1117:adult head elav-H2Av 1

text: GeneCore EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: elav-GAL4, UAS-H2Av-GFP

text: E-MTAB-1117:adult head elav-H2Av 1

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head elav-H2Av 1


E-MTAB-1117:adult head 5

characteristic: ENA-FIRST-PUBLIC

text: GeneCore EMBL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: wild-type (2202U2)

text: E-MTAB-1117:adult head 5

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head 5


E-MTAB-1117:adult head repo-RPB3 2

characteristic: ENA-LAST-UPDATE

text: GeneCore EMBL

text: public

text: repo-GAL4, UAS-GFP-RPB3

text: E-MTAB-1117:adult head repo-RPB3 2

characteristic: Submitter Id

text: 2 day

text: ArrayExpress

text: fruit fly

characteristic: common name

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (glia)

text: Drosophila melanogaster

text: adult head repo-RPB3 2


E-MTAB-1117:adult head to-H2Av 1

text: GeneCore EMBL

text: public

text: to-GAL4, UAS-H2Av-GFP

characteristic: StrainOrLine

text: E-MTAB-1117:adult head to-H2Av 1

text: 2 day

characteristic: age

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (fat body)

text: Drosophila melanogaster

text: adult head to-H2Av 1


E-MTAB-1117:adult head elav-RPB3 1

text: GeneCore EMBL

text: public

text: elav-GAL4, UAS-GFP-RPB3

text: E-MTAB-1117:adult head elav-RPB3 1

text: 2 day

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: description

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (neurons)

text: Drosophila melanogaster

text: adult head elav-RPB3 1


E-MTAB-1117:adult head elav-RPB3 2

text: GeneCore EMBL

text: public

text: repo-GAL4, UAS-GFP-RPB3

text: E-MTAB-1117:adult head elav-RPB3 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (glia)

characteristic: organism part

text: Drosophila melanogaster

text: adult head elav-RPB3 2

characteristic: title


E-MTAB-1117:adult head GFP-H2Av 2

characteristic: External Id

text: GeneCore EMBL

text: public

text: E-MTAB-1117:adult head GFP-H2Av 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

characteristic: developmental stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head GFP-H2Av 2


E-MTAB-1117:adult head 1

text: GeneCore EMBL

characteristic: INSDC center name

text: public

text: wild-type (2202U2)

text: E-MTAB-1117:adult head 1

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head 1


E-MTAB-1117:adult head GFP-H2Av 1

text: GeneCore EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-1117:adult head GFP-H2Av 1

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head GFP-H2Av 1


E-MTAB-1117:adult head repo-H2Av 1

characteristic: ENA-FIRST-PUBLIC

text: GeneCore EMBL

text: public

characteristic: INSDC status

text: repo-GAL4, UAS-H2Av-GFP

text: E-MTAB-1117:adult head repo-H2Av 1

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head repo-H2Av 1


E-MTAB-1117:adult head to-H2Av 2

characteristic: ENA-LAST-UPDATE

text: GeneCore EMBL

text: public

characteristic: SRA accession

text: to-GAL4, UAS-H2Av-GFP

text: E-MTAB-1117:adult head to-H2Av 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (fat body)

text: Drosophila melanogaster

text: adult head to-H2Av 2


E-MTAB-1117:adult head 3

text: GeneCore EMBL

text: public

text: wild-type (2202U2)

text: E-MTAB-1117:adult head 3

characteristic: Submitter Id

text: 2 day

text: ArrayExpress

text: fruit fly

characteristic: common name

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head 3


E-MTAB-1117:embryo 2

text: GeneCore EMBL

text: public

text: wild-type (2202U2)

characteristic: StrainOrLine

text: E-MTAB-1117:embryo 2

text: 0 day

characteristic: age

text: ArrayExpress

text: fruit fly

text: embryo

text: Drosophila melanogaster

text: Drosophila melanogaster

text: embryo

text: Drosophila melanogaster

text: embryo 2


E-MTAB-1117:adult head to-RPB3 1

text: GeneCore EMBL

text: public

text: to-GAL4, UAS-GFP-RPB3

text: E-MTAB-1117:adult head to-RPB3 1

text: 2 day

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: description

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (fat body)

text: Drosophila melanogaster

text: adult head to-RPB3 1


E-MTAB-1117:adult head 4

text: GeneCore EMBL

text: public

text: wild-type (2202U2)

text: E-MTAB-1117:adult head 4

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head

characteristic: organism part

text: Drosophila melanogaster

text: adult head 4

characteristic: title


E-MTAB-1117:adult head repo-H2Av 2

characteristic: External Id

text: GeneCore EMBL

text: public

text: repo-GAL4, UAS-H2Av-GFP

text: E-MTAB-1117:adult head repo-H2Av 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

characteristic: developmental stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (glia)

text: Drosophila melanogaster

text: adult head repo-H2Av 2


E-MTAB-1117:adult head 2

text: GeneCore EMBL

characteristic: INSDC center name

text: public

text: wild-type (2202U2)

text: E-MTAB-1117:adult head 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: head

text: Drosophila melanogaster

text: adult head 2


E-MTAB-1117:adult head repo-RPB3 1

text: GeneCore EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: repo-GAL4, UAS-EGFP-RPB5

text: E-MTAB-1117:adult head repo-RPB3 1

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (glia)

text: Drosophila melanogaster

text: adult head repo-RPB3 1


E-MTAB-1117:adult head to-RPB3 2

characteristic: ENA-FIRST-PUBLIC

text: GeneCore EMBL

text: public

characteristic: INSDC status

text: to-GAL4, UAS-GFP-RPB3

text: E-MTAB-1117:adult head to-RPB3 2

text: 2 day

text: ArrayExpress

text: fruit fly

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: head (fat body)

text: Drosophila melanogaster

text: adult head to-RPB3 2


text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: SC_GCIM5431194-sc-2012-12-10T10:01:15Z-1522520

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431213-sc-2012-12-10T10:01:39Z-1522539

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431263-sc-2012-12-10T10:02:35Z-1522589

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431231-sc-2012-12-10T10:01:57Z-1522557

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431269-sc-2012-12-10T10:02:43Z-1522595

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431268-sc-2012-12-10T10:02:41Z-1522594

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431216-sc-2012-12-10T10:01:42Z-1522542

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431203-sc-2012-12-10T10:01:25Z-1522529

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431212-sc-2012-12-10T10:01:38Z-1522538

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431230-sc-2012-12-10T10:01:56Z-1522556

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431262-sc-2012-12-10T10:02:34Z-1522588

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431224-sc-2012-12-10T10:01:50Z-1522550

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431267-sc-2012-12-10T10:02:40Z-1522593

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431234-sc-2012-12-10T10:02:00Z-1522560

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431204-sc-2012-12-10T10:01:27Z-1522530

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431274-sc-2012-12-10T10:02:47Z-1522600

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431215-sc-2012-12-10T10:01:41Z-1522541

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431271-sc-2012-12-10T10:02:45Z-1522597

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431261-sc-2012-12-10T10:02:33Z-1522587

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431223-sc-2012-12-10T10:01:49Z-1522549

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431214-sc-2012-12-10T10:01:40Z-1522540

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431211-sc-2012-12-10T10:01:37Z-1522537

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431233-sc-2012-12-10T10:01:59Z-1522559

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431192-sc-2012-12-10T10:01:13Z-1522518

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431197-sc-2012-12-10T10:01:19Z-1522523

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431270-sc-2012-12-10T10:02:44Z-1522596

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431222-sc-2012-12-10T10:01:48Z-1522548

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431190-sc-2012-12-10T10:01:10Z-1522516

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431195-sc-2012-12-10T10:01:16Z-1522521

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431196-sc-2012-12-10T10:01:17Z-1522522

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431232-sc-2012-12-10T10:01:58Z-1522558

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431260-sc-2012-12-10T10:02:32Z-1522586

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431208-sc-2012-12-10T10:01:32Z-1522534

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431221-sc-2012-12-10T10:01:47Z-1522547

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431199-sc-2012-12-10T10:01:21Z-1522525

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431277-sc-2012-12-10T10:02:50Z-1522603

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431237-sc-2012-12-10T10:02:05Z-1522563

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431226-sc-2012-12-10T10:01:52Z-1522552

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431235-sc-2012-12-10T10:02:01Z-1522561

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431225-sc-2012-12-10T10:01:51Z-1522551

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431188-sc-2012-12-10T10:01:08Z-1522514

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431209-sc-2012-12-10T10:01:34Z-1522535

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431272-sc-2012-12-10T10:02:45Z-1522598

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431198-sc-2012-12-10T10:01:20Z-1522524

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431236-sc-2012-12-10T10:02:04Z-1522562

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431278-sc-2012-12-10T10:02:52Z-1522604

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431220-sc-2012-12-10T10:01:46Z-1522546

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431201-sc-2012-12-10T10:01:23Z-1522527

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431239-sc-2012-12-10T10:02:08Z-1522565

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431275-sc-2012-12-10T10:02:48Z-1522601

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431229-sc-2012-12-10T10:01:55Z-1522555

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431228-sc-2012-12-10T10:01:54Z-1522554

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431187-sc-2012-12-10T10:01:07Z-1522513

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431205-sc-2012-12-10T10:01:29Z-1522531

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431219-sc-2012-12-10T10:01:45Z-1522545

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431207-sc-2012-12-10T10:01:31Z-1522533

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431266-sc-2012-12-10T10:02:39Z-1522592

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431217-sc-2012-12-10T10:01:43Z-1522543

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431218-sc-2012-12-10T10:01:44Z-1522544

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431276-sc-2012-12-10T10:02:49Z-1522602

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431238-sc-2012-12-10T10:02:06Z-1522564

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431186-sc-2012-12-10T10:01:04Z-1522512

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431227-sc-2012-12-10T10:01:53Z-1522553

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: SC_GCIM5431206-sc-2012-12-10T10:01:30Z-1522532

text: house mouse

text: Mus musculus

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: MMRI

text: public

text: human

text: Pooled blood RC-seq using version 1 design (Baillie et al., Nature, 2011)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Pooled blood


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of H4K20m1 from chromatin of T0901321 treated THP-1 cells.

characteristic: title


text: SRA-Webin

characteristic: External Id

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of IgG from chromatin of T0901322 treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of H4K20m1 from chromatin of OxLDL treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of H3K4m3 from chromatin of OxLDL treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of IgG from chromatin of T0901317+OxLDL treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of LXRalpha from chromatin of DMSO treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FAIRE-seq from chromatin of T0901317+OxLDL treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FAIRE-seq from chromatin of DMSO treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of LXRalpha from chromatin of T0901317+OxLDL treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FAIRE-seq from chromatin of OxLDL treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of LXRalpha from chromatin of T0901317 treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of IgG from chromatin of T0901323 treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of IgG from chromatin of DMSO treated THP-1 cells.


text: Hepatocyte

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: CEBPa

characteristic: ArrayExpress-Immunoprecipitate

text: Liver

characteristic: ArrayExpress-OrganismPart

text: female

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: B1_CEBPa-sc-2012-06-15T13:46:50Z-1437821

text: house mouse

text: Mus musculus

text: ChIPseq

characteristic: sample description

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: MPIMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ChIP-seq of LXRalpha from chromatin of OxLDL treated THP-1 cells.


text: Hepatocyte

text: Adult

text: Wildtype

text: Liver

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: ChIPseq

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FAIRE-seq from chromatin of T0901319 treated THP-1 cells.

characteristic: title


text: Hepatocyte

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: CEBPa

characteristic: ArrayExpress-Immunoprecipitate

text: Liver

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: ChIPseq

characteristic: sample description

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: MPIMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ChIP-seq of H4K20m1 from chromatin of DMSO treated THP-1 cells.


text: Hepatocyte

text: Adult

text: Liver

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: ChIPseq

text: Mus musculus

characteristic: strain


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of H3K4m3 from chromatin of DMSO treated THP-1 cells.

characteristic: title


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of H3K4m3 from chromatin of T0901320 treated THP-1 cells.


text: SRA-Webin

text: MPIMG

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP-seq of LXRalpha from chromatin of T0901318 treated THP-1 cells.


text: Hepatocyte

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

characteristic: ArrayExpress-Immunoprecipitate

text: Liver

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: __SBW1764-sc-2012-07-25T16:02:49Z-1457157

text: house mouse

text: Mus musculus

text: ChIPseq

characteristic: sample description

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: SRA-Webin

text: MPIMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ChIP-seq of IgG from chromatin of OxLDL treated THP-1 cells.


text: Hepatocyte

text: Adult

text: Liver

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: B2_HNF4a-sc-2012-06-15T13:46:00Z-1437822

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: ChIPseq

text: Mus musculus

characteristic: strain


text: Hepatocyte

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

text: polIII

characteristic: ArrayExpress-Immunoprecipitate

text: Liver

text: female

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: A4_polIII-sc-2012-06-15T13:46:02Z-1437823

text: house mouse

text: Mus musculus

text: ChIPseq

text: Mus musculus


text: Hepatocyte

text: Adult

text: polIII

text: Liver

characteristic: ArrayExpress-OrganismPart

text: female

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: B4_polIII-sc-2012-06-15T13:46:03Z-1437824

text: house mouse

text: Mus musculus

text: ChIPseq

characteristic: sample description

text: Mus musculus


text: Hepatocyte

text: Adult

text: Wildtype

text: Liver

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: _SBW1767-sc-2012-07-25T16:04:16Z-1457160

text: house mouse

text: Mus musculus

characteristic: organism

text: ChIPseq

text: Mus musculus


text: Hepatocyte

text: Adult

text: CEBPa

text: Liver

text: female

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: A1_CEBPa-sc-2012-06-15T13:46:28Z-1437819

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: ChIPseq

text: Mus musculus


text: Hepatocyte

characteristic: ArrayExpress-CellType

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

characteristic: ArrayExpress-Genotype

characteristic: ArrayExpress-Immunoprecipitate

text: Liver

text: female

text: Mus musculus

text: SC

text: public

text: A2_HNF4a-sc-2012-06-15T13:46:41Z-1437820

text: house mouse

text: Mus musculus

text: ChIPseq

text: Mus musculus

characteristic: strain


text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: GRD5311141-sc-2012-10-17T13:56:50Z-1377662

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC first public

text: public

text: GRD5311261-sc-2012-10-17T13:48:23Z-1377906

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

text: GRD5311234-sc-2012-10-17T13:41:46Z-1377847

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

characteristic: INSDC status

text: GRD5311155-sc-2012-10-17T14:28:12Z-1377692

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311160-sc-2012-10-17T14:00:58Z-1377701

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_GCIGC5375910-sc-2013-08-27T17:29:20Z-1457595

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GRD5311256-sc-2012-10-17T13:47:52Z-1377889

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

characteristic: SRA accession

text: GRD5311235-sc-2012-10-17T13:42:18Z-1377848

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311251-sc-2012-10-17T13:45:02Z-1377882

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311259-sc-2012-10-17T13:47:23Z-1377896

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311162-sc-2012-10-17T14:27:43Z-1377705

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311258-sc-2012-10-17T13:46:46Z-1377894

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311157-sc-2012-10-17T13:57:19Z-1377696

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311159-sc-2012-10-17T13:59:06Z-1377700

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311262-sc-2012-10-17T13:51:56Z-1377908

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311138-sc-2012-10-17T13:52:23Z-1377656

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311236-sc-2012-10-17T13:43:36Z-1377850

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311154-sc-2012-10-17T14:27:08Z-1377690

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5375909-sc-2013-08-27T17:29:12Z-1457594

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5376016-sc-2013-08-27T17:28:17Z-1457701

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311257-sc-2012-10-17T13:46:32Z-1377891

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5375997-sc-2013-08-27T17:28:08Z-1457682

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5376021-sc-2013-08-27T17:28:52Z-1457706

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5375912-sc-2013-08-27T17:29:30Z-1457597

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311166-sc-2012-10-17T13:39:29Z-1377711

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5375908-sc-2013-08-27T17:29:04Z-1457593

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311158-sc-2012-10-17T13:58:16Z-1377698

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311249-sc-2012-10-17T13:44:03Z-1377880

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311139-sc-2012-10-17T13:55:54Z-1377657

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311161-sc-2012-10-17T14:26:42Z-1377703

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311156-sc-2012-10-17T14:29:09Z-1377694

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5376019-sc-2013-08-27T17:28:43Z-1457704

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5375916-sc-2013-08-27T17:29:39Z-1457601

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311163-sc-2012-10-17T14:28:36Z-1377707

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5376017-sc-2013-08-27T17:28:26Z-1457702

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311165-sc-2012-10-17T13:41:09Z-1377710

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311153-sc-2012-10-17T14:01:26Z-1377688

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5376018-sc-2013-08-27T17:28:34Z-1457703

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311250-sc-2012-10-17T13:44:34Z-1377881

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: GRD5311140-sc-2012-10-17T13:56:18Z-1377659

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ArrayExpress-CellType

text: Embrionic

text: Wildtype

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 0 days

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA ES cells

characteristic: sample description

text: Mus musculus


text: TGAC

text: public

text: domesticated barley

text: Shoots from the seedlings (10 cm shoot stage)

characteristic: description

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: LEA-A

characteristic: title


characteristic: External Id

text: TGAC

text: public

text: domesticated barley

text: Roots from the seedlings (10cm shoot stage)

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: ROO-A


text: TGAC

characteristic: INSDC center name

text: public

text: domesticated barley

text: Young developing inflorescences (5mm)

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: TGAC

characteristic: INSDC first public

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: LEA-C


text: TGAC

characteristic: INSDC last update

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: LEA-B


text: TGAC

text: public

characteristic: INSDC status

text: domesticated barley

text: Developing grain, bracts removed (15 days post-anthesis)

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: TGAC

text: public

text: domesticated barley

text: Developing tillers at six - leaf stage, 3rd internode

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: NOD-A


text: TGAC

text: public

text: domesticated barley

text: 4-day embyros dissected from germinating grains

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: EMB-B


text: TGAC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: NOD-C


text: TGAC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: EMB-C


text: TGAC

text: public

text: domesticated barley

text: Developing grain, bracts removed (5 days post-anthesis)

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: TGAC

text: public

text: domesticated barley

text: Developing inflorescences (1-1.5 cm)

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: TGAC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: NOD-B


text: TGAC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: EMB-A


text: TGAC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: ROO-B


text: TGAC

text: public

text: domesticated barley

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: ROO-C


text: OSTEOBLASTS

text: MELATONIN

characteristic: ArrayExpress-Compound

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: 6 hours

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

text: 100 nM

characteristic: ArrayExpress-Dose

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 6 hours

characteristic: ArrayExpress-TimePoint

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: DMSO

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 6 hours

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

characteristic: sample description

text: Mus musculus


text: OSTEOBLASTS

text: DMSO

characteristic: ArrayExpress-Compound

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: 24 hours

text: SC

text: public

text: house mouse

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characteristic: organism

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 24 hours

characteristic: ArrayExpress-TimePoint

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: SEROTONIN

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: DMSO

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 48 hours

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Obmel_12-sc-2012-07-10T15:50:44Z-1448551

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

characteristic: sample description

text: Mus musculus


text: OSTEOBLASTS

text: MELATONIN

characteristic: ArrayExpress-Compound

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: 48 hours

text: SC

text: public

text: Obmel_14-sc-2012-07-10T15:50:47Z-1448553

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 48 hours

characteristic: ArrayExpress-TimePoint

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Obmel_13-sc-2012-07-10T15:50:45Z-1448552

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: SEROTONIN

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: Obmel_10-sc-2012-07-10T15:50:39Z-1448549

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: DMSO

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 48 hours

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Obmel_11-sc-2012-07-10T15:50:41Z-1448550

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads hyl1-2 replicate 2

characteristic: title


text: SRA-Webin

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads se-3


text: SRA-Webin

text: MPI-TUEBINGEN

text: public

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text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads cpl1-7 replicate 2


text: SRA-Webin

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads cpl1-7 replicate 1


text: SRA-Webin

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads hyl1-2 replicate 1


text: SRA-Webin

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads Col-0 replicate 1


text: SRA-Webin

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: sRNA reads Col-0 replicate 2


text: B Cells

characteristic: ArrayExpress-CellType

text: Wildtype

characteristic: ArrayExpress-Genotype

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: WTB_L_BS3-sc-2012-08-24T12:04:07Z-1474063

text: house mouse

text: Mus musculus

text: BSSeq from cultured B cells

characteristic: sample description

text: Mus musculus


text: B Cells

text: Wildtype

text: female

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: WTB_LI_BS3-sc-2012-08-24T12:03:46Z-1474064

text: house mouse

text: Mus musculus

characteristic: organism

text: BSSeq from cultured B cells

text: Mus musculus


text: Segmentation - 5-9 somites ZFS:0000024

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: ZMP_phenotype_3_2_mutant-sc-2013-05-29T10:01:08Z-1460076

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype3 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ZMP_phenotype_3_3_mutant-sc-2013-05-29T10:02:20Z-1460078

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype3 clutch3. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed

characteristic: strain


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: ZMP_phenotype_1_5_mutant-sc-2012-08-01T09:51:29Z-1460062

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype1 clutch5. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Pharyngula : Primordial 15 - ZFS:0000030

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_7_6_sibling-sc-2012-12-07T13:56:21Z-1522619

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 7 clutch 6. A 5 base indexing sequence (AGCGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_9_3_sibling-sc-2012-12-07T14:16:28Z-1522637

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 9 clutch3. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_1_2_mutant-sc-2012-08-01T09:51:21Z-1460056

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype1 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Larval : Day 4 - ZFS:0000036

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_9_1_mutant-sc-2012-12-07T14:16:18Z-1522632

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 9 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph9

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_2_2_mutant-sc-2012-08-01T09:51:34Z-1460066

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 2 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_8_4_sibling-sc-2012-12-07T14:06:07Z-1522627

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 8 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_1_2_sibling-sc-2012-08-01T09:51:23Z-1460057

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 1 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph1

text: Danio rerio

text: mixed


text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

text: public

text: ZMP_phenotype_7_4_sibling-sc-2012-12-07T13:56:15Z-1522615

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 7 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph7

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: ZMP_phenotype_2_1_sibling-sc-2012-08-01T09:51:32Z-1460065

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 2 clutch1. A 5 base indexing sequence(AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed


text: Segmentation - 5-9 somites ZFS:0000024

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_3_5_sibling-sc-2013-05-29T10:04:57Z-1460083

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 3 clutch5. A 5 base indexing sequence (ACGGG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph3

text: Danio rerio

text: mixed


text: Hatching - Long - pec ZFS:0000033

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: ZMP_phenotype_8_2_mutant-sc-2012-12-07T14:05:59Z-1522622

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 8 clutch2. A 5 base indexing sequence(CAGAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph8

text: Danio rerio

text: mixed


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: ZMP_phenotype_2_5_mutant-sc-2012-08-01T09:51:41Z-1460072

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 2 clutch5. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph2

text: Danio rerio

text: mixed