text: 29358649; 33075053; 34461978; 35780211

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: MWI

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


status: PUBLIC

text: 29358649; 33075053; 34461978; 35780211

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MWI

characteristic: Sample Description

characteristic: Strain

text: Mycobacterium

characteristic: genus

text: Malawi

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: disease:tuberculosis

characteristic: host health state

characteristic: isolate

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

characteristic: serovar

text: Human

characteristic: strain

characteristic: title

type: AMR curated data - CABBAGE

value: pyrazinamide

value: broth dilution

value: susceptible

value: Mycobacterium tuberculosis

value: isoniazid

value: ethambutol

value: rifampin

value: streptomycin


text: 29358649; 33075053; 34461978; 35780211

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: MWI

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: 29358649; 34461978; 35780211

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MWI

text: Mycobacterium

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: other

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: 29358649; 33075053; 34461978; 35780211

text: SC

characteristic: INSDC last update

text: public

text: MWI

characteristic: Sample Description

characteristic: Strain

text: Mycobacterium

characteristic: genus

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: 29358649; 34461978; 35780211

text: SC

text: public

text: MWI

text: Mycobacterium

text: Malawi

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: disease:tuberculosis

characteristic: host health state

characteristic: isolate

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human

value: resistant


text: 29358649; 33075053; 34461978; 35780211

text: SC

text: public

text: MWI

text: Mycobacterium

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

characteristic: serovar

text: Human

characteristic: strain

characteristic: title


text: 29358649; 33075053; 34461978; 35780211

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: MWI

characteristic: SRA accession

characteristic: Submitter Id

text: Mycobacterium

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: 29358649; 31736907

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MWI

text: Mycobacterium

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: 29358649; 33347430; 34461978; 35780211

text: SC

characteristic: INSDC last update

text: public

text: MWI

characteristic: Sample Description

characteristic: Strain

text: Mycobacterium

characteristic: genus

text: Malawi

text: Homo sapiens

text: disease:tuberculosis

text: sputum

text: respiratory tract

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Human


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Typhi

type: has member


text: SC

text: public

characteristic: STRAIN

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


text: SC

text: public

text: Chlamydia trachomatis

characteristic: organism

text: Chlamydia trachomatis


text: SC

text: public

text: Chlamydia trachomatis

text: Chlamydia trachomatis


text: SC

text: public

text: Tanzania: Kahe Mpya, Rombo district

characteristic: geographic location (country and/or sea)

text: Ocular

text: Chlamydia trachomatis

text: Chlamydia trachomatis

text: A

characteristic: serovar

text: Homo sapiens

characteristic: strain


text: SC

text: public

characteristic: INSDC status

text: Salmonella enterica subsp. enterica serovar Chester


text: SC

text: public

characteristic: SRA accession

text: Salmonella enterica subsp. enterica serovar Muenster


text: SC

text: public

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica serovar Urbana


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Oranienburg


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Javiana


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Reading


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Montevideo


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Brandenburg


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Itami


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Eastbourne


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Johannesburg


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Arechavaleta


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Panama


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Sandiego


text: SC

text: public

text: Salmonella enterica subsp. enterica serovar Carrau


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 653STDY5062311-sc-2011-04-05T13:27:10Z-1081405

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 653STDY5062317-sc-2011-04-05T13:27:13Z-1081411

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

characteristic: INSDC last update

text: public

characteristic: Sample Description

characteristic: Strain

text: 653STDY5062316-sc-2011-04-05T13:27:12Z-1081410

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Exome

text: TL

text: SL3_01_H11-sc-2011-04-11T09:29:41Z-1119756

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619466-sc-2011-04-05T15:08:56Z-1007123

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio


text: SC

text: public

text: TL

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_E2-sc-2011-04-11T09:28:56Z-1119605

text: zebrafish

text: Danio rerio

text: Danio rerio


text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: PDP1619459-sc-2011-04-05T15:08:52Z-1007116

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: 653STDY5062333-sc-2011-04-05T13:27:21Z-1081427

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: 653STDY5062363-sc-2011-04-05T13:27:33Z-1081457

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_C5-sc-2011-04-11T09:29:09Z-1119651

text: zebrafish

text: Danio rerio

text: Danio rerio


text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

text: TL

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: Danio rerio

text: TL

text: SC

text: public

characteristic: INSDC status

text: Exome

text: TL

text: SL3_01_C2-sc-2011-04-11T09:28:55Z-1119601

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

characteristic: SRA accession

text: Exome

text: TL

text: SL3_01_D9-sc-2011-04-11T09:29:30Z-1119717

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_D11-sc-2011-04-11T09:29:39Z-1119749

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

characteristic: ArrayExpress-Species

text: TL

text: SC

text: public

text: Exome

text: TL

text: SL3_01_B8-sc-2011-04-11T09:29:23Z-1119697

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Exome

text: TL

text: SL3_01_E4-sc-2011-04-11T09:29:06Z-1119638

text: zebrafish

text: Danio rerio

text: Danio rerio


text: adult

characteristic: DevelopmentalStage

characteristic: ENA-LAST-UPDATE

text: Organism: Mus musculus

characteristic: Experimental Factor: ORGANISM

text: OrganismPart: liver

characteristic: Experimental Factor: ORGANISMPART

text: CRUK-CRI

text: public

characteristic: Individual

text: Mus musculus

characteristic: Organism

text: liver

characteristic: OrganismPart

text: male

characteristic: Sex

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Mus musculus

text: Mus musculus


text: 50g (45g stored, 5g used for DNA extraction)

characteristic: Amount or size of sample collected

unit: μmol/mol

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

unit: cm

characteristic: Depth

characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 184 under ambient CO2

characteristic: description

text: Temperate grasslands, savannas, and shrubland biome

characteristic: environment (biome)

text: Clay soil

characteristic: environment (material)

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Soil microbial diversity composition and structure under ambient Carbon dioxide

characteristic: title


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

characteristic: Submitter Id

text: 16S rRNA

text: sampling from plot 306 under ambient CO2

text: Clay soil

text: soil metagenome

text: soil metagenome


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 344 under ambient CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

characteristic: environment (material)

text: soil metagenome

characteristic: organism

text: soil metagenome


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 23 under elevated CO2

text: Clay soil

text: soil metagenome

text: soil metagenome

text: Soil microbial diversity composition and structure under elevated Carbon dioxide

characteristic: title


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 173 under elevated CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

characteristic: environment (material)

text: soil metagenome

text: soil metagenome


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 163 under elevated CO2

text: Clay soil

text: soil metagenome

characteristic: organism

text: soil metagenome


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

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text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 250 under elevated CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

text: soil metagenome

text: soil metagenome

characteristic: title


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 67 under ambient CO2

text: Clay soil

characteristic: environment (material)

text: soil metagenome

text: soil metagenome


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45.4033333, -93.1852778

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

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characteristic: Sequencing method

text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

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text: sampling from plot 33 under elevated CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

text: soil metagenome

characteristic: organism

text: soil metagenome


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 147 under elevated CO2

text: Clay soil

text: soil metagenome

text: soil metagenome

characteristic: title


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

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text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

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text: sampling from plot 222 under ambient CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

characteristic: environment (material)

text: soil metagenome

text: soil metagenome


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 107 under ambient CO2

text: Clay soil

text: soil metagenome

characteristic: organism

text: soil metagenome


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

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text: sampling from plot 355 under ambient CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

text: soil metagenome

text: soil metagenome

characteristic: title


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 69 under ambient CO2

text: Clay soil

characteristic: environment (material)

text: soil metagenome

text: soil metagenome


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 283 under elevated CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

text: soil metagenome

characteristic: organism

text: soil metagenome


text: 50g (45g stored, 5g used for DNA extraction)

characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 104 under ambient CO2

text: Clay soil

text: soil metagenome

text: soil metagenome

characteristic: title


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 270 under elevated CO2

characteristic: description

text: Temperate grasslands, savannas, and shrubland biome

characteristic: environment (biome)

text: Clay soil

characteristic: environment (material)

text: soil metagenome

text: soil metagenome


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: sampling from plot 272 under elevated CO2

text: Clay soil

text: soil metagenome

characteristic: organism

text: soil metagenome


text: July 2007

text: grassland

text: GSC, MIxS, MIMARKS

text: unknown

text: Soil

text: Grassland

characteristic: External Id

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

characteristic: Geographic location (latitude and longitude)

text: IEG-OU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Investigation type

text: 16S on elevated CO2 in BioCON site

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

text: clay

characteristic: Soil type

characteristic: Submitter Id

text: 16S rRNA

characteristic: Target gene

characteristic: Target subfragment

text: sampling from plot 201 under ambient CO2

characteristic: description

characteristic: environment (biome)

text: Clay soil

text: soil metagenome

text: soil metagenome

text: Soil microbial diversity composition and structure under ambient Carbon dioxide

characteristic: title


characteristic: Amount or size of sample collected

characteristic: Carbon dioxide

text: July 2007

characteristic: Collection date

text: grassland

characteristic: Current land use

characteristic: Depth

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

text: unknown

characteristic: Elevation

text: Soil

characteristic: Enviornmental package

text: Grassland

characteristic: Environment (feature)

text: USA:Minnesota,East Bethel

text: 45° N, 93° W

text: IEG-OU

text: public

characteristic: INSDC status

text: 16S on elevated CO2 in BioCON site

characteristic: SRA accession

text: Pyrosequencing

text: clay

text: 16S rRNA

text: Clay soil

characteristic: environment (material)

text: soil metagenome

text: soil metagenome

text: Soil microbial diversity composition and structure under elevated Carbon dioxide


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: STRAIN

characteristic: Submitter Id

text: Leishmania major

characteristic: organism

text: Leishmania major


text: SC

text: public

text: Leishmania infantum JPCM5

text: Leishmania infantum JPCM5


text: SC

text: public

text: Friedlin

text: Leishmania major strain Friedlin

text: Leishmania major strain Friedlin


text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani


text: SC

text: public

text: Leishmania mexicana

text: Leishmania mexicana


text: Age

characteristic: Age

text: Department of Surgery, University of Pennsylvania

characteristic: BioSourceProvider

text: normal

characteristic: DiseaseState

text: 41 years

characteristic: Experimental Factor: Age

text: Immunoprecipitate: H3K4me2

characteristic: Experimental Factor: Immunoprecipitate

text: Phenotype: Caucasian

characteristic: Experimental Factor: Phenotype

text: Sex: female

characteristic: Experimental Factor: Sex

text: UNIVERSITY OF PENNSY

text: public

text: Homo sapiens

characteristic: Organism

text: pancreatic islet

characteristic: OrganismPart

text: Caucasian

characteristic: Phenotype

text: female

characteristic: Sex

tag: Namespace:UNIVERSITY OF PENNSY

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Normal donor Protocols: Protocol after that of Tuteja et al. 2008 Nucleic Acid Research 36(12): 4149-4157. Islets (10,000 IEQs) were centrifuged (13,000Xg /30 sec) at room temperature (RT) and resuspended in 500ml 2.22% formaldehyde/PBS while rotating them for 10-min/RT. 59 ml 2.5M glycine was added to a final conc of 0.14 M to stop cross linking, followed by rotation for 5min/RT. Cells were centrifuged (13,000Xg/ 1 min) and pellet was washed with 1 ml PBS followed by centrifugation (13,000Xg) and then resuspended in 200 ml cold CHIP Whole cell lysis buffer. Cells were homogenized with small plastic pestle by hand and incubated on ice for 10 min. Cells were sonicated using Diagenode Bioruptor for 10 min on high at 30 s intervals, followed by centrifugation at 13,000Xg for 10 mins/40C. Sample was split and 10 ml of supernatant was used as input; remainder was frozen in liquid nitrogren. 2mg chromatin was added to 1mL CHIP dilution buffer and proteinase inhibitor. 2mg anti-histone antibody was then added followed by rotation at 4 C/overnight. Protein G agarose beads were washed 3 times with 1 ml of CHIP dilution buffer, resuspended in BSA, protease inhibitor and CHIP dilution buffer for and rotated at 4 C overnight. 100 ml of blocked agarose beads were added to each chromatin sample, incubate at 4 C/1 hr followed by centrifugation at 13,000Xg to aspirate the supernatant. 1 ml of wash buffer was added (TSEI, TSEII, CHIP buffer 3 in consecutive order) to agarose pellet and rotate at RT/5min. 100ml elution buffer was added to the pellet and rotated for 15 min. This step was repeated and eluates were combined. 8 ml 5M NaCl/ 200 ml eluates were added and incubate at 65 C overnight. 8 ml 1M Tris HCl (pH7.5), 0.5M EDTA and 1 ml 10mg/ml proteinase K, were added to the sample followed by incubation at 45 C /1hr for reverse cross-linking. Un-crosslinked chromatin was purified using PCR purification kit and eluted in 50 ml EB. Enrichment of CHIP samples was confirmed using qPCR using SYBR GreenER (Invitrogen) and Mx3000 PCR System (Stratagene, La Jolla, CA, USA). Enrichment of target region was calculated using control region (+60Kb of insulin gene) as a reference (lacking histone modifications) and by comparing input (sheared genomic DNA) to ChIP material.

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Trypanosoma evansi

text: Trypanosoma evansi


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Uncultured_firmicute_TWS9-sc-2010-11-24-1015551

characteristic: Submitter Id

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Unknown individual bacterium isolated from human faeces

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: SC

text: public

text: Negative_control_KAP6-sc-2010-11-24-1015556

text: uncultured bacterium

text: uncultured bacterium

text: Negative control for multiple displacement amplification reaction


text: SC

text: public

text: Negative_control_KAP1-sc-2010-11-24-1015539

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS5-sc-2010-11-24-1015544

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS8-sc-2010-11-24-1015549

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Negative_control_KAP4-sc-2010-11-24-1015548

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS6-sc-2010-11-24-1015545

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Negative_control_KAP5-sc-2010-11-24-1015550

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS7-sc-2010-11-24-1015547

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Negative_control_KAP3-sc-2010-11-24-1015546

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: WGA from single cell

characteristic: SAMPLE DESCRIPTION

text: SFB-mouse

characteristic: STRAIN

text: Candidatus Arthromitus sp. SFB-mouse

text: Candidatus Arthromitus sp. SFB-mouse


text: SC

text: public

text: Negative_control_KAP7-sc-2010-11-24-1015557

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS10-sc-2010-11-24-1015552

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS11-sc-2010-11-24-1015553

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS12-sc-2010-11-24-1015554

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS13-sc-2010-11-24-1015555

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS4-sc-2010-11-24-1015542

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Negative_control_KAP2-sc-2010-11-24-1015543

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Uncultured_firmicute_TWS2-sc-2010-11-24-1015540

text: uncultured bacterium

text: uncultured bacterium

text: Unknown individual bacterium isolated from human faeces


text: SC

text: public

text: Uncultured_firmicute_TWS1-sc-2010-11-24-1015538

text: uncultured bacterium

text: uncultured bacterium


text: SC

text: public

text: Mouse

text: Nippostrongylus brasiliensis

text: Nippostrongylus brasiliensis


text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: SC

text: public

text: S java

text: Salmonella enterica subsp. enterica serovar Java


text: SC

text: public

text: S paratyphi B

text: Salmonella enterica subsp. enterica serovar Paratyphi B


text: SC

text: public


text: SC

text: public


text: Ipomoea purpurea

characteristic: Host

text: Ipomoea longipedunculat

text: JIC

text: public

text: SF

characteristic: Mating type

text: Mexico

characteristic: Origin

characteristic: YEAR

text: genomic DNA sequenced from P.ipomoeae PIC99167

text: Phytophthora ipomoeae PIC 99167

text: Phytophthora ipomoeae PIC 99167


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Houghton

text: Eimeria tenella strain Houghton

text: Eimeria tenella strain Houghton


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sample Description

characteristic: Strain

text: WA_NA_DiploidHeat_R2_F12_T8-sc-2011-01-25-1021220

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: WA_NA_Heat_R1_F12_T6-sc-2011-01-25-1021218

characteristic: Submitter Id

text: baker's yeast

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae


text: SC

text: public

text: baker's yeast

text: These data are part of a pre-publication release. For general information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ If you are planning analyses before 01 June 2011, or release of the publication, please contact leopold.parts@sanger.ac.uk to confirm they have not already been performed.

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: SC

text: public

text: First replica, mock selection, F12, timepoint 4

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: SC

text: public

text: WA_NA_DiploidHeat_R1_F12_T10-sc-2011-01-25-1021221

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: E14 EB Cells

characteristic: Cell Type

text: BI-UK

text: public

characteristic: Replicate

text: house mouse

text: E14 EB 1

text: Mus musculus

text: Mus musculus


text: SC

text: public

characteristic: STRAIN

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: External Id

text: SC

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: SC

characteristic: INSDC center name

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Salmonella enterica subsp. enterica serovar Stanleyville


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: Netherlands

characteristic: country

text: not available: not collected

text: not available: not collected

text: Mycobacterium avium subsp. paratuberculosis

text: not available: not collected

characteristic: serovar

text: Cow

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

characteristic: Sample Description

characteristic: Submitter Id

text: United Kingdom: Wales

text: not available: not collected

text: not available: not collected

characteristic: organism

text: not available: not collected

text: Cow


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Netherlands

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep


text: SC

text: public

text: United Kingdom: Northern Ireland

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: United Kingdom

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Norway

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


text: SC

text: public

text: Spain

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Spain

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep


text: SC

text: public

text: Spain

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


text: SC

text: public

text: Germany

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Germany

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Deer


text: SC

text: public

text: France

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


text: SC

text: public

text: United Kingdom: Scotland

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep


text: SC

text: public

text: USA

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Bison


text: SC

text: public

text: Czech Republic

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Moufflon


text: SC

text: public

text: Netherlands

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: India

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


text: SC

text: public

text: Greece

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep/Goat


text: SC

text: public

text: United Kingdom: Northern Ireland

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Czech Republic

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Netherlands

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Human


text: SC

text: public

text: Denmark

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep


text: SC

text: public

text: United Kingdom

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Ireland

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow?


text: SC

text: public

text: Norway

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


text: SC

text: public

text: Spain

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Deer


text: SC

text: public

text: United Kingdom: England

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: United Kingdom: Wales

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: India

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Buffalo


text: SC

text: public

text: Argentina

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Venezuela

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: USA

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Human


text: SC

text: public

text: United Kingdom: Scotland

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: United Kingdom: Scotland

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep


text: SC

text: public

text: Italy

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


text: SC

text: public

text: Greece

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


text: SC

text: public

characteristic: Strain


text: SC

characteristic: INSDC first public

text: public

text: Spain

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Sheep


text: SC

characteristic: INSDC last update

text: public

text: Netherlands

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Goat


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Netherlands

text: not available: not collected

text: not available: not collected

text: not available: not collected

text: Cow


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: CEIM 0172

characteristic: STRAIN

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

characteristic: INSDC status

text: CEIM 0151

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: Chad

characteristic: geographic location (country and/or sea)

text: Salmonella bongori

text: Salmonella bongori

characteristic: serovar

text: Lizard


text: SC

text: public

text: Salmonella bongori

text: Salmonella bongori

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Italy: Palermo

text: Salmonella bongori

text: Salmonella bongori

text: Homo sapiens

text: CEIM 44833


text: SC

text: public

characteristic: SRA accession

text: CEIM 24450

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: CEIM 46049

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: Italy: Catania

text: Salmonella bongori

text: Salmonella bongori

text: Homo sapiens

text: 285 CT


text: SC

text: public

text: Italy: Messina

text: Salmonella bongori

text: Salmonella bongori

text: Ocellated skink


text: SC

text: public

text: CEIM 46082

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: Belgium

text: Faeces

text: Salmonella bongori

text: Salmonella bongori

text: Homo sapiens


text: SC

text: public

text: United Kingdom

text: Food

text: Salmonella bongori

text: Salmonella bongori

text: Free living


text: SC

text: public

text: CEIM 24682

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: Spain

text: Salmonella bongori

text: Salmonella bongori

text: Lizard


text: SC

text: public

text: SV: 6,14:e,n,z15:-

text: Salmonella enterica

text: Salmonella enterica


text: SC

text: public

text: Germany

text: Cockroach

text: Salmonella bongori

text: Salmonella bongori

text: Free living


text: SC

text: public

text: CEIM 44992

text: Salmonella bongori

text: Salmonella bongori


text: SC

text: public

text: Nigeria

text: Dust sample

text: Salmonella bongori

text: Salmonella bongori

text: Free living


text: SC

text: public

text: Sudan

text: Salmonella bongori

text: Salmonella bongori

text: Homo sapiens


text: SC

text: public

text: Sweden

text: Faeces

text: Salmonella bongori

text: Salmonella bongori

text: Homo sapiens


text: SC

text: public

text: Ghana

text: Food

text: Salmonella bongori

text: Salmonella bongori

text: Free living


text: SC

text: public

text: Nigeria

text: Food

text: Salmonella bongori

text: Salmonella bongori

text: Free living


text: SC

text: public

text: E. multilocularis isolate H95

text: Echinococcus multilocularis

text: Echinococcus multilocularis


text: SC

text: public

text: E. multilocularis isolate H95

text: metacestode_backup_PCRfree-sc-2010-05-07-7540

text: Echinococcus multilocularis

text: Echinococcus multilocularis


text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: Schistosoma mansoni

text: Schistosoma mansoni


text: SC

text: public

text: Trypanosoma brucei

text: Trypanosoma brucei

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: SC

text: public

characteristic: Submitter Id

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: BioSourceType

characteristic: CellLine

text: macrophage

characteristic: CellType

text: 4 hours post infection

characteristic: DevelopmentalStage

characteristic: External Id

text: intracellular

characteristic: GrowthCondition

text: MWG

characteristic: INSDC center name

text: public

text: Listeria monocytogenes EGD-e

characteristic: Organism

text: ArrayExpress

characteristic: broker name

text: Protocols: L. monocytogenes 1/2a EGD-e were cultured in Brain Heart Infusion broth at 37C with shaking at 180 rpm. Eukaryotic cell growth conditions of murine macrophages P388D1 were cultured in RPMI 1640 (Gibco) supplemented with 10% fetal calf serum (FCS) (PAA Laboratories) in 85 mm tissue culture plates for RNA isolation. P388D1 murine macrophages were cultured in 85 mm tissue culture plates to about semi confluency. L. monocytogenes 1/2a EGD-e was infected to the cell monolayer at a MOI of 100 per eukaryotic cell. Infection was carried for 45 min and followed by addition of fresh medium containing 20 ug/ml gentamicin. The medium of the plates (containing 20 ug/ml gentamicin) infected with L. monocytogenes 1/2 EGD-e were replaced after 2 h post infection with fresh medium containing 50 ug/ml gentamicin. At each step the plates were washed extensively with 1x PBS. Incubation of the bacterial tissue culture plates was carried out in a humidified incubator for up to 4 h post infection. For RNA isolation from L. monocytogenes grown extracellularly in BHI, aliquots of 0.5 ml bacterial culture were treated with 1.0 ml RNA protect (Qiagen) for 5 min, the bacterial cells were collected by centrifugation for 10 min (8000 x g) and subsequently stored at -80C until use. RNA extraction from intracellularly grown L. monocytogenes in macrophages was performed as described previously (Chatterjee, 2006) with exeption of a MOI of 100. Briefly, infected host cells were lysed using cold mix of 0.1% (wt/vol) sodium dodecyl sulfate, 1.0% (vol/vol) acidic phenol and 19% (vol/vol) ethanol in water. The bacterial pellets were collected by centrifugation for 3 min (16000 x g).Total RNA was extracted using miRNeasy kit (Qiagen) with some modifications. The collected pellets were washed with SET buffer (50 mM NaCl, 5 mM EDTA and 30 mM Tris-HCl [pH 7.0]) containing 10% SDS. After centrifugation at 16,000 g for 3 min pellets were resuspend into 0.1 ml Tris-HCl [pH 6.5] containing 50 mg/ml lysozyme, 25 U of mutanolysin, 40 U of SUPERase, 0.2 mg of proteinase K (Ambion) and finally treated with 4 U of DNaseI (RNase free) (Ambion) at 37C for 30 min at 350 rpm. 600 ul of QIAzol was added, mixed gently and incubated for 3 min at room temperature. An additional incubation at room temperature was done after adding 0.2 volume chloroform followed by centrifugation at 16,000 g at 4C for 15 min. The upper aqueous phase, containing RNA, was transferred to a new collection tube and 1.5 volumes of 100% ethanol was added and mixed thoroughly. The probes were transferred into columns supplied with the miRNeasy Kit and treated as described in the Qiagen manual, including an on-column DNase digestion (RNase-Free DNase, Qiagen). RNAs were eluted by RNase-free water and stored at -80C until needed. The quantity of the isolated total RNA was determined by absorbance at 260 nm and 280 nm, and the quality was assessed using Nano-chips for Agilents 2100 Bioanalyzer. For detection and estimation of the small RNA fraction within the isolated total RNA, a small RNA-chip (Agilent) was used, which visualize RNAs with sizes ranging from 20 to 200 nucleotides.

characteristic: description

text: Listeria monocytogenes EGD-e

text: Listeria monocytogenes EGD-e


characteristic: ENA-FIRST-PUBLIC

text: UH/IB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

unit: PSU

characteristic: Salinity

unit: ml

characteristic: Sample Size

unit: ËC

characteristic: Temperature

characteristic: collection date

text: Brackish water sample taken from 30m depth in the northern Baltic Sea

unit: m

characteristic: geographical location (depth)

text: 59.4834833 N 22.8968333 E

characteristic: geographical location (longitude and longitude)

characteristic: library reads sequenced

text: marine metagenome

unit: mg/l

characteristic: oxygen

text: marine metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UH/IB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Brackish water sample taken from 1m depth in the northern Baltic Sea

characteristic: geographic location (depth)

text: 60.171350 N 25.005533 E

characteristic: geographic location (latitude and longitude)

text: marine metagenome

characteristic: organism

text: marine metagenome


characteristic: ENA-FIRST-PUBLIC

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: description

text: 59.3783 N 21.4412 E

text: marine metagenome

text: marine metagenome


text: UH/IB

text: public

characteristic: INSDC status

characteristic: Salinity

characteristic: Sample Size

characteristic: Temperature

characteristic: collection date

text: Brackish water sample taken from 10m depth in the northern Baltic Sea

text: 60.17135 N 25.0055333 E

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

text: UH/IB

text: public

characteristic: geographical location (depth)

text: 59.8464833 N 24.8378333 E

characteristic: geographical location (longitude and longitude)

characteristic: library reads sequenced

text: marine metagenome

characteristic: oxygen

text: marine metagenome


characteristic: External Id

text: UH/IB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Brackish water sample taken from 215m depth in the northern Baltic Sea

text: 59.3783 N 21.4412 E

text: marine metagenome

text: marine metagenome


characteristic: ENA-FIRST-PUBLIC

text: UH/IB

characteristic: INSDC center name

text: public

text: 59.3783 N 21.4412 E

text: marine metagenome

characteristic: organism

text: marine metagenome


text: UH/IB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: description

text: 59.4834833 N 22.8968333 E

text: marine metagenome

text: marine metagenome


text: UH/IB

text: public

characteristic: INSDC status

characteristic: Salinity

characteristic: Sample Size

text: Brackish water sample taken from 101m depth in the northern Baltic Sea

text: 59.8464833 N 24.8378333 E

text: marine metagenome

text: marine metagenome


characteristic: ENA-LAST-UPDATE

text: UH/IB

text: public

characteristic: Temperature

characteristic: collection date

text: 59.8464833 N 24.8378333 E

text: marine metagenome

text: marine metagenome


text: SC

text: public

characteristic: STRAIN

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Conidia asexual spores

characteristic: Developmental Stage

characteristic: External Id

text: Hordeum vulgare subsp. vulgare cv. Golden Promise

characteristic: Host Organism

characteristic: Host Taxonomy ID

text: ICL-CFB

text: public

text: Conidia (asexual spores) were collected from infected barley by vacuum onto Millipore filters; conidia were not older than 24 hours.

text: Blumeria graminis f. sp. hordei DH14

text: Blumeria graminis f. sp. hordei DH14


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Mus_musculus_castaneous-sc-2010-11-04-1004796

characteristic: Submitter Id

text: southeastern Asian house mouse

text: Mus musculus castaneus

text: Mus musculus castaneus

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_description

characteristic: translation missing: en, metadata, sample, sample_metadata, sample_strain_att


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Castaneous H14

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Castaneous H30

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: Castaneous H15

characteristic: STRAIN

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: Chlamydomonas reinhardtii

text: Chlamydomonas reinhardtii


Sahiwal pool 2

text: ROSLIN

text: public

characteristic: Number of Animals

text: Sahiwal

characteristic: Strain

text: Sahiwal pool 2

text: Pooled Sahiwal Genomic DNA

characteristic: description

text: Bos indicus

text: Bos indicus

text: Sahiwal Genomic DNA Pool 2

characteristic: title


Sahiwal pool 1

characteristic: External Id

text: ROSLIN

text: public

text: Sahiwal

text: Sahiwal pool 1

text: Pooled Sahiwal Genomic DNA

text: Bos indicus

text: Bos indicus

text: Sahiwal Genomic DNA Pool 1


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: Generation

text: NCGR

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: rice

text: Rice Nipponbare 93-11 recombinant inbred line No.100

text: Oryza sativa

text: Oryza sativa


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

text: Thailand

characteristic: geographic location (country and/or sea)

text: disease

characteristic: host health state

text: Blood culture

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

characteristic: serovar

text: homo sapiens

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

characteristic: organism

text: Burkholderia pseudomallei

text: homo sapiens

text: D1 9033-5008


characteristic: External Id

text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Sus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Mueller gibbon


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Monkey


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Gorilla


text: SC

text: public

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Homo sapiens


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: D10 7310-3154


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: I6 4043-3096


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: K1127 7244-293


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: D7 3230-3018


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: D6 8346-3058


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Bird of Paradise


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Canis lupus familiaris


text: SC

text: public

text: Thailand

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens


text: SC

text: public

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Homo sapiens

text: HA


text: SC

text: public

text: United Kingdom

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: BRI


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Sambar


text: SC

text: public

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: palm cockatoo


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: Cat


text: SC

text: public

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: cassowary


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens

text: EB 6103/04


text: SC

text: public

text: Singapore

text: disease

text: Pus

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens


text: SC

text: public

text: Singapore

text: disease

text: not known

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei

text: homo sapiens


text: SC

text: public

text: BRA

text: Shigella

characteristic: genus

text: Brazil

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

value: tetracycline

value: Shigella sonnei

value: ampicillin

value: chloramphenicol

value: trimethoprim-sulfamethoxazole


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

text: KEN

characteristic: SRA accession

text: Shigella

text: Kenya

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

value: nalidixic acid

value: trimethoprim


text: SC

text: public

text: PER

characteristic: Submitter Id

text: Shigella

text: Peru

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GBR

text: Shigella

text: United Kingdom

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human

characteristic: strain


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

text: Shigella

text: Brazil

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: External Id

text: SC

text: public

text: VNM

text: Shigella

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: STRAIN

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-CHECKLIST

text: SC

text: public

text: VNM

text: Shigella

characteristic: genus

text: Viet Nam

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC center name

text: public

text: KOR

characteristic: SRA accession

characteristic: Submitter Id

text: Shigella

text: South Korea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: VNM

text: Shigella

text: Viet Nam

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human

characteristic: strain


characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: VNM

text: Shigella

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: United Kingdom

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei


characteristic: ENA-CHECKLIST

text: SC

text: public

text: VNM

text: Shigella

characteristic: genus

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


text: SC

characteristic: INSDC center name

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: VNM

characteristic: SRA accession

characteristic: Submitter Id

text: Shigella

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: External Id

text: SC

characteristic: INSDC first public

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Viet Nam

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-CHECKLIST

text: SC

text: public

text: VNM

text: Shigella

characteristic: genus

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC center name

text: public

text: GBR

text: Shigella

text: United Kingdom

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


text: SC

text: public

characteristic: SRA accession

characteristic: Sample Description

characteristic: Submitter Id

text: Israel

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: France

characteristic: geographic location (country and/or sea)

text: Shigella sonnei

text: Shigella sonnei


characteristic: External Id

text: SC

text: public

text: SWE

text: Shigella

text: Sweden

text: Homo sapiens

text: Diseased

characteristic: host health state

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: STRAIN

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: GBR

text: Shigella

characteristic: genus

text: United Kingdom

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


text: SC

characteristic: INSDC center name

text: public

text: GBR

characteristic: SRA accession

text: Shigella

text: United Kingdom

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: GBR

characteristic: Submitter Id

text: Shigella

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Denmark

text: Diseased

characteristic: host health state

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: GBR

text: Shigella

text: United Kingdom

text: Homo sapiens

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: DOM

text: Shigella

characteristic: genus

text: Dominican Republic

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC center name

text: public

text: PAK

text: Shigella

text: Pakistan

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


text: SC

text: public

characteristic: SRA accession

text: France

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Pakistan

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: SWE

characteristic: Submitter Id

text: Shigella

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Sweden

text: Shigella sonnei

text: Shigella sonnei


text: SC

characteristic: INSDC first public

text: public

text: HTI

text: #06 6470

text: Shigella

text: Haiti

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

text: BRA

text: Shigella

text: Brazil

text: Homo sapiens

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: PAK

text: Shigella

characteristic: genus

text: Pakistan

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: EGY

characteristic: SRA accession

text: Shigella

text: Egypt

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: PAK

text: Shigella

text: Pakistan

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


text: SC

text: public

text: GBR

characteristic: Submitter Id

text: Shigella

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: GBR

text: Shigella

text: United Kingdom

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

text: FRA

text: Shigella

text: France

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Sample Description

characteristic: Strain

text: Shigella sonnei

text: Shigella sonnei


text: SC

text: public

text: MAR

characteristic: SRA accession

text: #06 5387

text: Shigella

characteristic: genus

text: Morocco

text: Homo sapiens

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: KOR

characteristic: Submitter Id

text: Shigella

text: South Korea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


text: SC

text: public

text: MAR

characteristic: SRA accession

text: #06 5623

text: Shigella

characteristic: genus

text: Morocco

text: Homo sapiens

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


characteristic: External Id

text: SC

text: public

characteristic: STRAIN

characteristic: Submitter Id

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: KOR

text: Shigella

text: South Korea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Sample Description

text: Israel

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characteristic: host health state

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Strain

text: Shigella flexneri 6

text: Shigella flexneri 6


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: EGY

text: Shigella

characteristic: genus

text: Egypt

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: Viet Nam

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: FRA

text: Shigella

text: France

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: FRA

characteristic: SRA accession

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text: France

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: France

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: Senegal

text: Shigella sonnei

text: Shigella sonnei


text: SC

text: public

text: NGA

text: Shigella

characteristic: genus

text: Nigeria

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-CHECKLIST

text: SC

text: public

text: FRA

text: Shigella

text: France

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: NGA

characteristic: Submitter Id

text: Shigella

text: Nigeria

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: VNM

text: Shigella

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain


text: SC

characteristic: INSDC last update

text: public

text: FRA

text: Shigella

text: France

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: title


text: SC

text: public

characteristic: INSDC status

text: FRA

characteristic: SRA accession

text: Shigella

text: France

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: FRA

text: Shigella

characteristic: genus

text: France

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: Sweden

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei


text: SC

text: public

text: France

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-CHECKLIST

text: SC

text: public

text: FRA

text: Costa Rica

characteristic: country

text: Shigella

text: France

text: Homo sapiens

text: Diseased

text: ill

characteristic: isolate

text: stool

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: not applicable

characteristic: serovar

text: human


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: CRI

characteristic: Submitter Id

text: Costa Rica

text: Shigella

text: France

text: Homo sapiens

text: ill

text: stool

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: not applicable

text: human


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Sample Description

characteristic: Strain

text: Shigella flexneri 6

text: Shigella flexneri 6


text: SC

text: public

characteristic: INSDC status

text: SWE

characteristic: SRA accession

text: Shigella

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: #06 6134

characteristic: STRAIN

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Israel

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: FRA

characteristic: Submitter Id

text: #07 4369

text: Shigella

characteristic: genus

text: France

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Shigella sonnei

text: Shigella sonnei


text: SC

text: public

text: KOR

text: Shigella

text: South Korea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SEN

text: #06 5179

text: Shigella

text: Senegal

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: BFA

text: #06 2542

text: Shigella

text: Burkina Faso

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


text: SC

characteristic: INSDC center name

text: public

text: GUF

characteristic: Submitter Id

text: #06 0108

text: Shigella

characteristic: genus

text: French Guiana

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC first public

text: public

text: MAR

text: #05 5623

text: Shigella

text: Morocco

text: Homo sapiens

characteristic: host

text: Diseased

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

text: #04 1191

text: Shigella

text: Tanzania

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: #03 8624

characteristic: STRAIN

text: Shigella sonnei

text: Shigella sonnei


text: SC

text: public

text: CUB

text: #03 2222

text: Shigella

text: Cuba

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: #03 0903

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: PAK

text: Shigella

text: Pakistan

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


text: SC

characteristic: INSDC first public

text: public

text: PAK

characteristic: Submitter Id

text: Shigella

characteristic: genus

text: Pakistan

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: #06 6396

text: France

text: Shigella sonnei

text: Shigella sonnei


text: SC

text: public

text: FRA

text: Shigella

text: France

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: FRA

text: Shigella

text: France

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: #97 0044

text: New Caledonia

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: GUF

text: #98 8743

text: Shigella

text: French Guiana

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: #00 2225

text: French Guiana

text: Shigella sonnei

text: Shigella sonnei


text: SC

text: public

text: MDG

text: #00 5827

text: Shigella

characteristic: genus

text: Madagascar

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Viet Nam

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: BRA

text: Shigella

text: Brazil

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: NPL

text: Shigella

text: Nepal

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Ss046 DNA

characteristic: STRAIN

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Shigella sonnei

text: Shigella sonnei


characteristic: ENA-CHECKLIST

text: SC

text: public

text: KOR

characteristic: Submitter Id

text: Shigella

characteristic: genus

text: South Korea

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: KOR

characteristic: SRA accession

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SWE

text: Shigella

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

characteristic: host health state

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: United Kingdom

text: Shigella sonnei

text: Shigella sonnei

characteristic: strain


characteristic: External Id

text: SC

text: public

text: VNM

text: Shigella

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: South Korea

text: Diseased

text: Faeces

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

text: public

text: VNM

characteristic: Submitter Id

text: Shigella

characteristic: genus

text: Viet Nam

text: Homo sapiens

characteristic: host

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: VNM

characteristic: SRA accession

text: Shigella

text: Viet Nam

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: KOR

text: Shigella

text: South Korea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

characteristic: serovar

text: Human


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

characteristic: host health state

characteristic: isolate

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

text: Shigella sonnei

text: Human


characteristic: External Id

text: SC

text: public

text: KOR

text: Shigella

text: South Korea

text: Homo sapiens

text: Diseased

text: Faeces

text: gastrointestinal system

text: Shigella sonnei

characteristic: organism

text: Shigella sonnei

text: Human

characteristic: strain


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

characteristic: Sample Description

text: Malawi

characteristic: country

text: disease

text: Blood

text: Salmonella enterica subsp. enterica serovar Enteritidis

text: Enteritidis

text: human

text: enterica

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EMRSA 16

characteristic: SAMPLE DESCRIPTION

characteristic: Submitter Id

text: Finland

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: EMRSA 16

characteristic: SRA accession

text: United Kingdom: South England

characteristic: geographic location (country and/or sea)

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: EMRSA 15

text: UK

characteristic: lat

characteristic: lon

text: Staphylococcus aureus

characteristic: pmid

text: London

characteristic: region

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: serology


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: EMRSA 16

text: Btn 1429

characteristic: STRAIN

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: EMRSA 15

text: Ireland

text: Staphylococcus aureus

text: Dublin

text: Staphylococcus aureus

text: Staphylococcus aureus

text: AR 0650 784

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: EMRSA 15

characteristic: SAMPLE DESCRIPTION

characteristic: Submitter Id

text: UK

text: Staphylococcus aureus

text: London

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

characteristic: INSDC status

text: EMRSA 15

characteristic: SRA accession

text: Phenol 127911

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: EMRSA 16

text: HO 7174 0534 05

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: EMRSA 16

text: United Kingdom: London

characteristic: geographic location (country and/or sea)

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Homo sapiens


text: SC

text: public

text: EMRSA 16

text: United Kingdom: Central England

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Homo sapiens


text: SC

text: public

text: EMRSA 15

text: Sweden A 09973/ 97

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: EMRSA 15

text: UK

characteristic: lat

characteristic: lon

text: Staphylococcus aureus

characteristic: pmid

text: Oxford

text: Staphylococcus aureus

text: Staphylococcus aureus

text: H182 MRSA


characteristic: External Id

text: SC

text: public

text: EMRSA 16

text: H28 0600 0062 05

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

characteristic: INSDC center name

text: public

text: EMRSA 15

text: UK

text: Staphylococcus aureus

text: Scotland

characteristic: region

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: serology

text: RH 0600 0064 09


text: SC

characteristic: INSDC first public

text: public

text: EMRSA 15

text: UK

text: Staphylococcus aureus

characteristic: organism

text: Aberdeen

text: Staphylococcus aureus

text: Staphylococcus aureus