text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_12-sc-1972503

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:European Molecular Biology Laboratory Heidelberg (EMBL), Heidelberg, Germany

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

characteristic: common name

text: Protocols: mRNAs were RNAse I treated, extracted with phenol/chloroform and reverse transcriped. Size selected cDNAs were PCR amplifiedation

characteristic: description

text: recombination

characteristic: genetic modification

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: European Molecular Biology Laboratory Heidelberg (EMBL), Heidelberg, Germany

text: public

text: ArrayExpress

text: HeLa

text: human

text: recombination

text: PTB-GFP

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of stamen primodium stage of Barley cultivar Bowman Exp 1

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: domesticated barley

text: RNA of stamen primodium stage of Barley cultivar Bowman Exp 2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: domesticated barley

text: RNA of stamen primodium stage of Barley cultivar Bowman Exp 3

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: domesticated barley

text: RNA of stamen primodium stage of Barley showing lax.a mutant phenotyp Exp 1

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of stamen primodium stage of Barley showing lax.a mutant phenotyp Exp 2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of stamen primodium stage of Barley showing lax.a mutant phenotyp Exp 3

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of glume primodium stage of Barley cultivar Bowman Exp 1

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of glume primodium stage of Barley cultivar Bowman Exp 2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of glume primodium stage of Barley cultivar Bowman Exp 3

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of glume primodium stage of Barley showing lax.a mutant phenotyp Exp 1

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of glume primodium stage of Barley showing lax.a mutant phenotyp Exp 2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of glume primodium stage of Barley showing lax.a mutant phenotyp Exp 3

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of complete developed immature spike meristems of Barley cultivar Bowman Exp 1

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of complete developed immature spike meristems of Barley cultivar Bowman Exp 2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of complete developed immature spike meristems of Barley cultivar Bowman Exp 3

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of complete developed immature spike meristems of Barley showing lax.a mutant phenotyp Exp 1

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of complete developed immature spike meristems of Barley showing lax.a mutant phenotyp Exp 2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: RNA of complete developed immature spike meristems of Barley showing lax.a mutant phenotyp Exp 3

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: DNA pool of 3 recombination genotypes out of a F2 backcross population of BW457 and Bowman

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: DNA pool of 2 recombination genotypes out of a F2 backcross population of BW457 and Bowman

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: IPK-Gatersleben

text: public

text: domesticated barley

text: DNA of a near isogenic line out of a F2 backcross population of BW457 and Bowman

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare


text: leflunomide

characteristic: ArrayExpress-Compound

text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_1-sc-1972504

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO.A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_2-sc-1972505

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_3-sc-1972506

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_4-sc-1972507

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 1Lefl_0_1DMSO_30hpf_treated_5-sc-1972508

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (ACAGTGGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_6-sc-1972509

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_7-sc-1972510

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_8-sc-1972511

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_9-sc-1972512

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_10-sc-1972513

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_11-sc-1972514

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1Lefl_0_1DMSO_30hpf_treated_12-sc-1972515

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 1 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6_5Lefl_0_1DMSO_30hpf_treated_1-sc-1972516

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: 6_5Lefl_0_1DMSO_30hpf_treated_2-sc-1972517

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_3-sc-1972518

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_4-sc-1972519

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_5-sc-1972520

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_6-sc-1972521

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTCTGTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_7-sc-1972522

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_8-sc-1972523

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTGGAGGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_9-sc-1972524

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TCGAGCGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6_5Lefl_0_1DMSO_30hpf_treated_10-sc-1972525

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: 6_5Lefl_0_1DMSO_30hpf_treated_11-sc-1972526

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: 6_5Lefl_0_1DMSO_30hpf_treated_12-sc-1972527

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 6.5 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_1-sc-1972528

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGCGATCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_2-sc-1972529

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_3-sc-1972530

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_4-sc-1972531

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TACAGGAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_5-sc-1972532

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TCCTCAAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_6-sc-1972533

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGTGGTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 40Lefl_0_1DMSO_30hpf_treated_7-sc-1972534

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TAGTCTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: 40Lefl_0_1DMSO_30hpf_treated_8-sc-1972535

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTCCATTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_9-sc-1972536

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TCGAAGTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_10-sc-1972537

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TAACGCTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_11-sc-1972538

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TTGGTATG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: 40Lefl_0_1DMSO_30hpf_treated_12-sc-1972539

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 40 micromolar leflunomide in 0.1% v/v DMSO. A 8 base indexing sequence (TGAACTGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TACTTCGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TCTCACGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TCAGGAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TAAGTTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TCCAGTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TGTATGCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TCATTGAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TGGCTCAG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TATGCCAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_control_10-sc-1972549

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TCAGATTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_control_11-sc-1972550

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TACTAGTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lefl_0_1DMSO_30hpf_control_12-sc-1972551

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo treated with 0.1% v/v DMSO. A 8 base indexing sequence (TTCAGCTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Lefl_0_1DMSO_30hpf_untreated_1-sc-1972552

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: Lefl_0_1DMSO_30hpf_untreated_2-sc-1972553

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TATGTGGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_3-sc-1972554

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TTACTCGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_4-sc-1972555

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_5-sc-1972556

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_6-sc-1972557

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_7-sc-1972558

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_8-sc-1972559

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lefl_0_1DMSO_30hpf_untreated_9-sc-1972560

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Lefl_0_1DMSO_30hpf_untreated_10-sc-1972561

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

text: Whole Embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: Lefl_0_1DMSO_30hpf_untreated_11-sc-1972562

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TAGAACAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 15 (ZFS:0000030)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: Lefl_0_1DMSO_30hpf_untreated_12-sc-1972563

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 30hpf embryo. A 8 base indexing sequence (TCATCCTA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Normal

characteristic: ArrayExpress-Phenotype

text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: unidentified

text: SC

text: public

text: unidentified

text: unidentified


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: public

tag: Namespace:HUBRECHT INSTITUTE, UTRECHT, THE NETHERLANDS

text: human

text: TLA

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: TLA

characteristic: title


characteristic: ENA-CHECKLIST

text: HUBRECHT INSTITUTE, UTRECHT, THE NETHERLANDS

text: public

text: human

characteristic: common name

text: TLA

text: Homo sapiens

text: Homo sapiens

text: TLA


text: Mouse

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


E-MTAB-2602:Pread. BAT 11-3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-2602:Pread. BAT 11-3

text: ArrayExpress

characteristic: broker name

text: brown adiopcyte precursor

characteristic: cell type

text: human

text: Protocols: We have isolated clonal immortalized preadipocyte lines from stromal vascular fractions (SVFs) that were obtained from supraclavicular biopsies of 2 individuals undergoing surgery (30- and 43-years old). RiboZol reagent (AMRESCO) following the manufacturer's protocol Ultralow DR library kit (NuGEN): www.nugeninc.com/nugen/index.cfm/products/cs/ngs/rna-seq-v2

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Pread. BAT 11-3


E-MTAB-2602:WAT 7-9 12

text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-2602:WAT 7-9 12

text: ArrayExpress

text: differentiated white adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cyclic AMP

characteristic: stimulus

text: WAT 7-9 12


E-MTAB-2602:WAT 7-11 12

text: UCSF

text: public

characteristic: SRA accession

text: E-MTAB-2602:WAT 7-11 12

characteristic: Submitter Id

text: ArrayExpress

text: differentiated white adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cyclic AMP

text: WAT 7-11 12


E-MTAB-2602:WAT 7-11 7

text: UCSF

text: public

text: E-MTAB-2602:WAT 7-11 7

text: ArrayExpress

text: differentiated white adiopcyte

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: WAT 7-11 7


E-MTAB-2602:BAT 11-1 11

text: UCSF

text: public

text: E-MTAB-2602:BAT 11-1 11

text: ArrayExpress

text: differentiated brown adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cyclic AMP

text: BAT 11-1 11

characteristic: title


E-MTAB-2602:Pread. WAT 7-11

characteristic: ENA-CHECKLIST

text: UCSF

text: public

text: E-MTAB-2602:Pread. WAT 7-11

text: ArrayExpress

text: white adiopcyte precursor

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Pread. WAT 7-11


E-MTAB-2602:Pread. BAT 16

text: UCSF

text: public

text: E-MTAB-2602:Pread. BAT 16

text: ArrayExpress

text: brown adiopcyte precursor

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Pread. BAT 16


E-MTAB-2602:Pread. WAT 7-9

characteristic: ENA-FIRST-PUBLIC

text: UCSF

text: public

text: E-MTAB-2602:Pread. WAT 7-9

text: ArrayExpress

text: white adiopcyte precursor

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Pread. WAT 7-9


E-MTAB-2602:BAT 11-1 8

text: UCSF

text: public

text: E-MTAB-2602:BAT 11-1 8

text: ArrayExpress

text: differentiated brown adiopcyte

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: BAT 11-1 8


E-MTAB-2602:WAT 7-7 9

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: E-MTAB-2602:WAT 7-7 9

text: ArrayExpress

text: differentiated white adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: WAT 7-7 9


E-MTAB-2602:Pread. WAT 7-7

characteristic: External Id

text: UCSF

text: public

text: E-MTAB-2602:Pread. WAT 7-7

text: ArrayExpress

text: white adiopcyte precursor

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Pread. WAT 7-7


E-MTAB-2602:BAT 16 7

text: UCSF

text: public

text: E-MTAB-2602:BAT 16 7

text: ArrayExpress

characteristic: broker name

text: differentiated brown adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: BAT 16 7


E-MTAB-2602:Pread. BAT 11-1

text: UCSF

text: public

text: E-MTAB-2602:Pread. BAT 11-1

text: ArrayExpress

text: brown adiopcyte precursor

characteristic: cell type

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Pread. BAT 11-1


E-MTAB-2602:BAT 11-3 12

text: UCSF

characteristic: INSDC center name

text: public

text: E-MTAB-2602:BAT 11-3 12

text: ArrayExpress

text: differentiated brown adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cyclic AMP

text: BAT 11-3 12


E-MTAB-2602:BAT 11-3 8

text: UCSF

characteristic: INSDC first public

text: public

text: E-MTAB-2602:BAT 11-3 8

text: ArrayExpress

text: differentiated brown adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: BAT 11-3 8


E-MTAB-2602:BAT 16 12

text: UCSF

characteristic: INSDC last update

text: public

text: E-MTAB-2602:BAT 16 12

text: ArrayExpress

text: differentiated brown adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cyclic AMP

text: BAT 16 12


E-MTAB-2602:WAT 7-7 10

text: UCSF

text: public

characteristic: INSDC status

text: E-MTAB-2602:WAT 7-7 10

text: ArrayExpress

text: differentiated white adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cyclic AMP

text: WAT 7-7 10


E-MTAB-2602:WAT 7-9 9

text: UCSF

text: public

text: E-MTAB-2602:WAT 7-9 9

text: ArrayExpress

text: differentiated white adiopcyte

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: WAT 7-9 9


text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Cpsf3 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TTCAGCTC) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TACTAGTC) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCAGATTC) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: C57BL6/N / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TATGCCAG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGGCTCAG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCATTGAG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGTATGCG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCCAGTCG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Cpsf3 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TAAGTTCG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCAGGAGG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCTCACGG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Whole embryo

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TACTTCGG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGAACTGG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Cpsf3 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TTGGTATG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TAACGCTG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCGAAGTG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TTCCATTG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TAGTCTTG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Cpsf3 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGTGGTTG) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCCTCAAT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: southeastern Asian house mouse

text: Mus musculus castaneus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TACAGGAT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus castaneus

characteristic: strain


text: Cpsf3 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: western European house mouse

characteristic: common name

text: Mus musculus domesticus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TAGTGACT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus domesticus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGCGATCT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: C57BL6/N / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Cpsf3tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Cpsf3 for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGATACGT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGCTGATA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TAGACGGA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGTGAAGA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCTCTTCA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: RIKEN9130011E15 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TTGTTCCA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGAAGCCA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TACCACCA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGCGTGAA) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GGTGAGTT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: RIKEN9130011E15 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GATCTCTT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GTGTCCTT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GACGGATT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GCAACATT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GGTCGTGT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: RIKEN9130011E15 / C57BL6/N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GAATCTGT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GTACATCT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: RIKEN9130011E15 / C57BL6/N

text: Whole embryo

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GAGGTGCT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: C57BL6/N / C57BL6/N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GCATGGCT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Whole embryo

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GTTAGCCT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele 9130011E15Riktm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=9130011E15Rik for more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (GTCGCTAT) is bases 11 to 18 of non-index read 2 followed by CG and polyT

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Danio rerio


text: EMBL EBI

text: public

tag: Namespace:EMBL EBI

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mESC

characteristic: cell type

text: house mouse

text: Protocols: Cells were grown in one of 3 different media: Serum-containing media: Knockout DMEM (Gibco), 1X penicillin-streptomycin-glutamine (Gibco), 1X non-essential amino acids (Gibco), 100 U/ml recombinant human leukemia inhibitory factor (Millipore), 15% fetal bovine serum (HyClone), 0.1mM _-mercaptoethanol (Sigma). Standard 2i media: N2B27 basal media (NDiff 227, StemCells), 100 U/ml recombinant human leukemia inhibitory factor (Millipore), 1 _M PD0325901 (Stemgent), 3 _M CHIR99021 (Stemgent). Alternative 2i media: N2B27 basal media (NDiff 227, StemCells), 100 U/ml recombinant human leukemia inhibitory factor (Millipore), 1 _M CGP77675 (Sigma), 3 _M CHIR99021 (Stemgent). (SMARTer) reverse transcription and cDNA preamplification were performed in the 10-17 microns Fluidigm C1 Single-Cell Auto Prep IFC using the SMARTer PCR cDNA Synthesis kit (Clontech) and the Advantage 2 PCR kit (RNAEasy) RNA was extracted usin RNAEasy kit, Qiagen (Nextera XT) For each culture condition, 4000 cells were loaded onto a 10-17 micron Fluidigm C1 Single-Cell Auto Prep IFC and cell capture was performed according to the manufacturer's instructions. Nextera libraries were according to “Using the C1TM Single-Cell Auto Prep System to Generate mRNA from Single Cells and Libraries for Sequencing”. (TruSeq) Bulk mRNA sequencing libraries were prepared and sequenced at the Wellcome Trust Sanger Institute sample preparation pipeline using Illumina's TruSeq RNA Sample Preparation v2 kit. RNA was extracted from 1-2mln cells using Qiagen RNA Purification Kit on QiaCube robot. Quality of RNA sample was checked using gel electrophoresis. For library preparation poly-A RNA was purified from total RNA using oligo-dT magnetic pull-down, subsequently mRNA was fragmented using metal-ion catalyzed hydrolysis. cDNA was synthesized using random priming, end repair was performed to obtain blunt ends and A-tailing was done to enable subsequent ligation of Illumina paired-end sequencing adapters. Samples were multiplexed at this stage. Resulting library was amplified using 10 cycles of PCR using Kapa Hifi polymerase instead of polymerase provided by Illumina in TruSeq kit

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: fresh specimen

characteristic: specimen with known storage state

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

characteristic: SRA accession

text: ArrayExpress

text: claical brown adipocyte

text: house mouse

text: Protocols: Primary stromal vascular (SV) cells were isolated from inguinal WAT or from interscapular BAT of the same C57BL/6 mice using Collagenase D (1.5 u/ml) and Dispase II (2.4 u/ml). To clearly define the molecular signatures of PPAR-gamma ligand-induced beige cells, we used C57BL/6 mice that possess less beige cells in the absence of environmental stimuli. SV cells were plated in collagen coated culture dishes in DMEM/F12 medium (D-glucose 17.51 mM) and differentiated as described previously (DOI: 10.1371/journal.pone.0049452). Beige cells were induced by a specific PPAR-gamma agonist rosiglitazone (1uM). RiboZol reagent (AMRESCO) following the manufacturer's protocol Ultralow DR library kit (NuGEN): www.nugeninc.com/nugen/index.cfm/products/cs/ngs/rna-seq-v2

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: UCSF

text: public

characteristic: Submitter Id

text: ArrayExpress

text: inguinal white adipocyte

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: rosiglitazone-treated adipocyte (beige cell)

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: 12 weeks

characteristic: ArrayExpress-Age

characteristic: ArrayExpress-Genotype

text: MOE

characteristic: ArrayExpress-OrganismPart

text: Wildtype

characteristic: ArrayExpress-Phenotype

text: female

characteristic: ArrayExpress-Sex

text: Mouse

characteristic: ArrayExpress-Species

text: CAST/EiJ

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: RNA from MOE

characteristic: sample description

text: Mus musculus

text: CAST/EiJ

characteristic: strain


text: 9 weeks

text: MOE

text: Mutant

text: male

text: Mouse

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: RNA from MOE

text: Mus musculus


text: Embryo outgrowth

characteristic: ArrayExpress-CellType

characteristic: ArrayExpress-GrowthCondition

text: Normal

text: male

text: Mus musculus

characteristic: ArrayExpress-Treatment

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from cell culture

text: Mus musculus


text: Embryo outgrowth

text: SPSCM

text: Normal

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SPSCM

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: RNA from cell culture

text: Mus musculus


text: Embryonic stem cell

text: Normal

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: RNA from cell culture

characteristic: sample description

text: Mus musculus


text: Embryonic stem cell

text: SPSCM

text: Normal

text: male

text: Mus musculus

text: SPSCM

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from cell culture

text: Mus musculus


text: Embryonic stem cell

characteristic: ArrayExpress-CellType

text: Fgf4 depdendent

characteristic: ArrayExpress-GrowthCondition

text: Normal

text: male

text: Mus musculus

text: Fgf4 depdendent

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: RNA from cell culture

text: Mus musculus


text: Danio rerio

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: genomic DNA

text: Danio rerio


text: CeMM - Center for Molecular Medicine

text: public

tag: Namespace:CeMM - Center for Molecular Medicine

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Cells were grown in IMDM media supplemented with 10% fetal bovine serum. Cells were seeded at a density of 0.5x10e6 cells/ml Cells have been treated with 1 uM YM155 for six hours. Control treatment has been conducted with DMSO as vehicle control with a final DMSO concentration of 0.01% DMSO in each condition. RNA has been isolated from 5x10e5 cells each using RNAeasy kit (Qiagen) and library preparation has been performed with TrueSeq RNA v2 kit (Illumina) RNA has been isolated from 5x10e5 cells each using RNAeasy kit (Qiagen) and library preparation has been performed with TrueSeq RNA v2 kit (Illumina)

characteristic: description

text: wild type

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: CeMM - Center for Molecular Medicine

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: gene trap

characteristic: genetic modification

text: SLC35F2 knock out

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:University of Alberta and Livestock Gentec

text: ArrayExpress

text: cattle

text: Protocols: The original samples were collected from beef cattle at the Lacombe research station in Alberta (Canada),following the guidelines of the Canadian Council on Animal Care (1993)and the protocol approved by the Lacombe Research Centre Animal Care Committee. mRNA from seven different tissues was extracted (adipose, muscle, hypothalamus, duodenum, liver, lung and kidney) from frozen tissues using TRIzol (Invitrogen). Sequencing libraries were constructed from each pooled tissue according to a standard protocol (mRNA Sequencing Sample Preparation Guide, Illumina, USA)

text: Bos taurus

text: Bos taurus

text: hypothalamus

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state


text: University of Alberta and Livestock Gentec

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cattle

text: Bos taurus

text: Bos taurus

text: lung

text: Bos taurus

text: male

text: frozen specimen


text: public

text: ArrayExpress

text: cattle

characteristic: common name

characteristic: description

text: Bos taurus

text: Bos taurus

text: muscle

text: Bos taurus

text: male

text: frozen specimen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: adipose

text: Bos taurus

text: male

text: frozen specimen


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: duodenum

text: Bos taurus

text: male

text: frozen specimen


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: liver

text: Bos taurus

text: male

text: frozen specimen


text: public

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: kidney

characteristic: organism part

text: Bos taurus

text: male

characteristic: sex

text: frozen specimen


characteristic: INSDC center name

text: public

tag: Namespace:Unite Genetique Animale et Biologie Integrative

text: ArrayExpress

text: cattle

text: Protocols: RNA Qiagen Rneasy Illumina TruSeq RNA sample prep kit

characteristic: individual

text: Bos taurus

text: Bos taurus

text: muscle

text: Bos taurus

text: male


text: Unite Genetique Animale et Biologie Integrative

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ArrayExpress

text: cattle

text: Bos taurus

text: Bos taurus

text: muscle

text: Bos taurus

text: male


status: KILLED

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: killed

text: RNA from whole blood derived from humans infected with Salmonella Typhi

characteristic: Sample Description

characteristic: Strain

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: MPI-EVA

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: Protocols: Rats were bred and rat brains dissected as described in Albert et al. 2009. Tissues were then stored at -80C. Brains were thawed to -20C for cutting brain hemispheres. mRNA was extracted by chloroform extraction and purified with Qiagen RNEasy MinElute Clean-up kits. Sequencing libraries were prepared with in-house protocols (see Kuhlwilm et al. 2013).

characteristic: description

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

characteristic: specimen with known storage state

characteristic: tame or aggressive phenotype

characteristic: title


E-MTAB-2544:F2_rat_ 95

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI-EVA

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-2544:F2_rat_ 95

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: brain hemisphere

characteristic: organism part

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 95


E-MTAB-2544:F2_rat_ 98

text: MPI-EVA

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-2544:F2_rat_ 98

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 98


E-MTAB-2544:F2_rat_ 67

characteristic: ENA-CHECKLIST

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 67

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 67


E-MTAB-2544:F2_rat_ 70

text: MPI-EVA

characteristic: INSDC last update

text: public

text: E-MTAB-2544:F2_rat_ 70

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 70


E-MTAB-2544:F2_rat_ 83

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 83

text: ArrayExpress

text: Norway rat

characteristic: common name

characteristic: description

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 83


E-MTAB-2544:F2_rat_ 63

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 63

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

characteristic: specimen with known storage state

characteristic: tame or aggressive phenotype

text: F2_rat_ 63


E-MTAB-2544:F2_rat_ 64

characteristic: ENA-FIRST-PUBLIC

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 64

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 64

characteristic: title


E-MTAB-2544:F2_rat_ 78

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 78

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 78


E-MTAB-2544:F2_rat_ 77

text: MPI-EVA

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-2544:F2_rat_ 77

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 77


E-MTAB-2544:F2_rat_ 82

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 82

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: brain hemisphere

characteristic: organism part

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 82


E-MTAB-2544:F2_rat_ 97

text: MPI-EVA

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-2544:F2_rat_ 97

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 97


E-MTAB-2544:F2_rat_ 72

characteristic: ENA-CHECKLIST

text: MPI-EVA

text: public

text: E-MTAB-2544:F2_rat_ 72

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 72


E-MTAB-2544:F2_rat_ 69

text: MPI-EVA

characteristic: INSDC last update

text: public

text: E-MTAB-2544:F2_rat_ 69

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

text: brain hemisphere

text: Rattus norvegicus

text: frozen specimen

text: F2_rat_ 69


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: killed

characteristic: Sample Description

characteristic: Strain

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from cell culture

characteristic: sample description

text: Mus musculus


text: Embryonic stem cell

characteristic: ArrayExpress-CellType

text: serum/LIF

characteristic: ArrayExpress-GrowthCondition

text: Normal

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: serum/LIF

characteristic: ArrayExpress-Treatment

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: RNA from cell culture

text: Mus musculus


text: Embryonic stem cell

text: standard 2i

text: Normal

text: male

text: Mus musculus

text: standard 2i

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from cell culture

text: Mus musculus


text: Embryonic stem cell

text: SPSCM

text: Normal

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SPSCM

text: SC

characteristic: INSDC last update

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from cell culture

text: Mus musculus


text: Induced pluripotent stem cell

text: SPSCM

text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus musculus

text: SPSCM

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from cell culture

characteristic: sample description

text: Mus musculus


text: Induced pluripotent stem cell

characteristic: ArrayExpress-CellType

text: standard 2i

characteristic: ArrayExpress-GrowthCondition

text: Normal

text: Mus musculus

text: standard 2i

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from cell culture

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: CECAD, university of Cologne

text: public

tag: Namespace:CECAD, university of Cologne

text: ArrayExpress

characteristic: broker name

text: fission yeast

text: Protocols: Briefly, 500ml cultures grown at 32C were formaldehyde fixed for 30 min, harvested by centrifugation and snap frozen. Chromatin extract (CE) was prepared with a Fastprep machine (MP Biomedicals) at 6 x 20 sec, 5.5 m/s using an equal volume of 0.5 ml acid-washed glass beads (BioSpec products) to break cells. Lysates were sonicated using a Bioruptor (Diagenode) at 6 x 5, 30 s on, 30 s off, in ice cold conditions, to create CE with an average DNA size of approximately 200 bp. Immunoprecipitations (ChIps) were set up using 5 mg CE on Dynabeads Protein A with appropriate antibody (Invitrogen, LifeTechnologies). Input (CE) and ChIPs were de-crosslinked overnight, treated with DNase-free RNase (Roche) and Proteinase K (Invitrogen, LifeTechnologies), and the DNA purified using PureLink PCR micro kits (Invitrogen, LifeTechnologies). ChIP-seq libraries from the immunoprecipitated samples and corresponding input material were prepared using the NEBNext ChIP-Seq Library Prep Master Mix set for Illumina (New England Biolabs) combined with Illumina Barcodes 1-12. Briefly, and according to manufacturers instructions, DNA was end-repaired, end adaptors ligated, and the libraries amplified with 15 PCR cycles in the presence of Illumina barcodes. Libraries were purified using SPRI-beads (Agencourt, Beckman Coulter), and library size distributions and concentrations were determined by Bioanalyzer and Qubit (Invitrogen, LifeTechnologies).

characteristic: description

characteristic: genotype

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CECAD, university of Cologne

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: fission yeast

text: wild type genotype

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: University of Dundee

characteristic: INSDC last update

text: public

tag: Namespace:University of Dundee

characteristic: Submitter Id

text: 4 day

characteristic: age

text: ArrayExpress

characteristic: cell line

text: fruit fly

characteristic: common name

text: Protocols: Kc167 cells were grown in Schneiders medium containing 10% FBS. Cells were transfected with dsRNAs targeting each gene using FugeneHD transfecton reagent. After 4 days, aliquot of cells were analysed by flow cytometry and remaining cells were collected for RNA extraction. Cells were lysed with QIAzol Lysis Reagent (Qiagen). After chloroform addition, total was precipitated from the aqueous phase with 1/10 volume of 3M sodium acetate, pH 5.0 and one volume of isopropanol. 15 ug total was fragmented for 3 min at 70 degreesC in fragmentation buffer (Ambion). Fragmentation was terminated by cooling of the sample on ice and addition of EDTA to 17 mM final concentration. 2.5 ul fragmented was then mixed with 0.5 ul 100 mM MgCl2 and diluted to 30 ul with RNAse-free water.

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster

text: female

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

tag: Namespace:National Research Center for Epigenome Reprogramming Network

text: ArrayExpress

characteristic: broker name

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: We purchased normal mouse embryonic stem cells (E14) from the Mutant Mouse Regional Resource Centers (MMRRC). We cultured stem cells in DMEM containing 15% (v/v) FBS (Hyclone), 2 mM L-glutamine, 1% (v/v) nonessential amino acids, 55uM-mercaptoethanol, antibiotics (all from Gibco) and 1,000 U ml-1of ESGRO (Chemicon) on gelatin-coated plates. ESC differentiation was induced by LIF withdrawal of ESC medium in monolayer cultures. PLKO-puro constructs expressing shRNAs were purchased from Sigma. The shRNA constructs targeting Ctbp2 are TRCN0000109335 and TRCN0000307495. Lentiviruses were produced with 293FT cell by co-transfection of 1 mg each of pMD2.G, pMDLg/pRRE, pRSV-rev, pLKO-shRNA using Lipofectamin (Invitrogen). 48 h after transfection, virus-containing medium was collected and filtered by 0.45 mm filters. Polybrene (10 mg ml-1) was added just before infection to target cells and infection was performed for 5 h. Puromysin selection (2 mg ml-1) was performed 48 h after infection for 2 days. As a control, we used pLKO.1 puro vector. Cells were cross-linked with 1% (v/v) formaldehyde for 10min at 37C and lysed with buffer containing 85mM KCl, 5mM PIPES (pH 8.0) and 0.5% (v/v) NP-40. After centrifugation, nuclear pellets were resuspended in buffer containing 10mM EDTA, 100mM Tris-Cl (pH 8.1) and 1% SDS. To solubilize and shear cross-linked DNA, lysates were sonicated. 10-fold diluted lysates in IP buffer containing 16.7mM Tris-Cl (pH 8.1), 167mM NaCl, 0.01% (w/v) SDS, 1.1% (v/v) Triton X-100 and 1.2mM EDTA were incubated overnight at 4C with protein A/G PLUS agarose and 1-2ug appropriate antibodies.(Ctbp2 antibody=BD Transduction Laboratories, cat#612044; normal mouse igG antibody = Santa Cruz, cat#sc-2025) Beads were washed with 1X 20mM Tris-Cl (pH 8.1), 150mM NaCl, 0.1% (w/v) SDS, 1% Triton X-100, 2mM EDTA, 1X 20mM Tris-Cl (pH 8.1), 150mM NaCl, 0.1% (w/v) SDS, 1% Triton X-100, 2mM EDTA, 1X 0.25M LiCl, 1% (v/v) NP40, 1% (v/v) Deoxycholate, 1mM EDTA, 10mM Tris-Cl (pH 8.1) and 2X with TE. Immune complexes were then eluted by adding 250ul of elution buffer containing 1% (w/v) SDS and 0.1M NaHCO3 two times. Cross-linking was reversed by adding of 20ul of 5M NaCl and incubated overnight at 65C. DNA was precipitated with ethanol and kept in -20C for the further use.

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: fresh specimen

characteristic: title


text: 12 weeks

characteristic: ArrayExpress-Age

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Islet

characteristic: ArrayExpress-OrganismPart

text: Wildtype

characteristic: ArrayExpress-Phenotype

text: male

text: Mus Musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: WGBSseq library made from DNA extracted from Islet cells

characteristic: sample description

text: Mus musculus


text: 6-12 weeks

text: Wildtype

text: Spleen

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA from cells

text: Mus musculus