text: Danio rerio

text: SC

text: public

text: NRAS5200931-sc-2013-07-31T15:03:31Z-1247815

text: goldfish

text: Carassius auratus

characteristic: organism

text: Carassius auratus


status: PUBLIC

text: Danio rerio

tag: attribute

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NRAS5200932-sc-2013-07-31T15:03:32Z-1247816

characteristic: Submitter Id

text: goldfish

characteristic: common name

text: Carassius auratus

text: Carassius auratus


text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252008-sc-2011-11-30T14:46:40Z-1309228

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5251916-sc-2011-11-30T14:46:45Z-1309233

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5251921-sc-2011-11-30T14:46:58Z-1309241

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252036-sc-2011-11-30T14:47:39Z-1309287

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5251962-sc-2011-11-30T14:48:15Z-1309322

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: NRAS5200933-sc-2013-07-31T15:03:32Z-1247817

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252062-sc-2011-11-30T14:48:34Z-1309339

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5251991-sc-2011-11-30T14:49:13Z-1309377

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252106-sc-2011-11-30T14:50:00Z-1309414

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252200-sc-2011-11-30T14:50:13Z-1309431

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252219-sc-2011-11-30T14:50:42Z-1309469

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252151-sc-2011-11-30T14:51:17Z-1309504

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252160-sc-2011-11-30T14:51:33Z-1309521

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: 3GMUS5291850-sc-2012-02-09T14:15:29Z-1354750

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: NRAS5200935-sc-2013-07-31T15:03:34Z-1247819

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5200936-sc-2013-07-31T15:03:35Z-1247820

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Homo sapiens

text: SC

text: public

text: T2DRVpool2_PD-sc-2011-07-06T14:52:26Z-4808

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: TRVP776036-sc-2011-07-06T15:02:31Z-785103

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo sapiens

text: SC

text: public

text: TRVP776064-sc-2011-07-06T15:12:20Z-785131

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo sapiens

text: SC

text: public

text: TRVP776100-sc-2011-07-06T15:22:19Z-785167

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: TRVP776082-sc-2011-07-06T15:32:29Z-785149

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo Sapien

text: SC

text: public

text: SC_GCIGC5236837-sc-2011-10-17T15:46:08Z-1289737

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252263-sc-2011-11-30T14:52:09Z-1309559

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252287-sc-2011-11-30T14:52:47Z-1309595

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252301-sc-2011-11-30T14:52:59Z-1309613

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252408-sc-2011-11-30T14:53:33Z-1309651

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252426-sc-2011-11-30T14:54:10Z-1309686

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252434-sc-2011-11-30T14:54:29Z-1309703

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252365-sc-2011-11-30T14:55:19Z-1309741

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252375-sc-2011-11-30T14:55:32Z-1309757

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252469-sc-2011-11-30T14:55:48Z-1309776

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252232-sc-2012-03-13T13:15:12Z-1309495

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252403-sc-2012-03-13T13:17:26Z-1309640

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: C57BL6J x 129SV

characteristic: strain


text: Plasmodium falciparum

text: SC

text: public

text: 3C__H_ON_DCJ-sc-2011-05-05T16:47:42Z-1132320

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

text: SC

text: public

text: 3C_M_B15C2-sc-2011-05-05T16:47:49Z-1132332

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

text: SC

text: public

text: HIC_M_B15C2-sc-2011-05-05T16:47:56Z-1132343

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Danio rerio

text: SC

text: public

text: NRAS5206884-sc-2013-07-31T15:05:00Z-1254855

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206885-sc-2013-07-31T15:05:01Z-1254856

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206886-sc-2013-07-31T15:05:02Z-1254857

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206887-sc-2013-07-31T15:05:03Z-1254858

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206982-sc-2013-07-31T15:06:30Z-1254953

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206984-sc-2013-07-31T15:06:32Z-1254955

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206985-sc-2013-07-31T15:06:32Z-1254956

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206986-sc-2013-07-31T15:06:33Z-1254957

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206987-sc-2013-07-31T15:06:34Z-1254958

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: NRAS5206988-sc-2013-07-31T15:06:35Z-1254959

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236642-sc-2013-07-31T15:07:55Z-1289542

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236643-sc-2013-07-31T15:07:56Z-1289543

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236644-sc-2013-07-31T15:07:58Z-1289544

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236645-sc-2013-07-31T15:07:59Z-1289545

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236646-sc-2013-07-31T15:07:59Z-1289546

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236647-sc-2013-07-31T15:08:00Z-1289547

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236674-sc-2013-07-31T15:08:23Z-1289574

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236675-sc-2013-07-31T15:08:24Z-1289575

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236676-sc-2013-07-31T15:08:25Z-1289576

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236677-sc-2013-07-31T15:08:27Z-1289577

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236678-sc-2013-07-31T15:08:28Z-1289578

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5236679-sc-2013-07-31T15:08:29Z-1289579

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: public

tag: Namespace:Plant Ecology, Institute of Biology Leiden, Leiden University

text: ArrayExpress

characteristic: broker name

text: carrot

text: Protocols: Seeds were germinated in Petri dishes at room temperature. To involve more genetic diversity of each cultivated carrot variety or wild carrot population, three seedlings were randomly chosen from each cultivated carrot variety or wild carrot population. Each seedling was transplanted into a 15*15*20 cm3 pot with 1:1 mixed sand and soil. All the plants were grown in a climate chamber with 16-h day/8-h night, temperature 20 degrees C and relative humidity 70% for 11 weeks. Each root was carefully harvested to reduce damage, quickly cleaned with water, transversely cut in the middle of the main root into small slices and immediately put into RNase-free tubes (about 100 mg per tube). All the samples were freshly frozen in liquid nitrogen to prevent RNA degradation and induced expression patterns. Root samples were stored at -80 degrees C

characteristic: description

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: Nantes

characteristic: strain or line

text: CN

characteristic: title

type: has member


text: Plant Ecology, Institute of Biology Leiden, Leiden University

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

characteristic: organism

text: Daucus carota

text: Daucus carota

text: Chantenay

text: CC


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: Berlikumer

text: CB


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: Parijse

text: CP


characteristic: External Id

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: Flakkee

text: CF


characteristic: INSDC center name

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: wild (from Meijendel, Netherlands)

text: WNL-M


characteristic: INSDC first public

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: wild (from Esposende, Portugal)

text: WPT


characteristic: INSDC last update

text: public

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: wild (from Lachish, Israel)

text: WIL


text: public

characteristic: INSDC status

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: wild (from Trencin, Slovakia)

text: WSK


text: public

characteristic: SRA accession

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: wild (from Schermer Polder, Netherlands)

text: WNL-SP


text: public

characteristic: Submitter Id

text: ArrayExpress

text: carrot

text: Daucus carota

text: Daucus carota

text: Daucus carota

text: Amsterdamse Bak

text: CA


text: public

tag: Namespace:College of Fisheries, Huazhong Agriculture University

text: ArrayExpress

text: mandarin fish

characteristic: common name

text: Protocols: The hybrid F1 of Siniperca scherzeri (Siniperca chuatsi (body length about 5 cm per fish) were obtained from Guangdong Freshwater Fish Farm (Panyu, Guangdong Province, China). The training was performed by following the methods reported by Liang et al. (2001) using net-cages as the experimental culture. Fry of India mrigal Cirrhina mrigola were used as the live prey fish for mandarin fish in this study, and the dead prey fish were prepared by freezing. During the training period, the fish were visually sorted into feeders and nonfeeders on the basis of plumpness or emaciation, respectively. The training period did not cause the nonfeeders to die of hunger because of the relatively short length of the time and large size of the fish. To eliminate the influence of hunger on the transcriptional levels of mandarin fish, both two groups were fed with live prey fish for two days after training Equal masses of total RNA extraction for brain and liver tissues of 16 individuals for dead prey fish feeders and nonfeeders in mandarin fish was performed using RNA Purification Reagent (Invitrogen, CA). Libraries for brain and liver tissues were constructed according to the standard protocol by Beijing Genomics Institute (BGI). Beads with Oligo(dT) are used to isolate poly(A) mRNA after total RNA is collected from eukaryote (prokaryocyte can be treated with kit to remove rRNA before next step). Fragmentation buffer is added for interrupting mRNA to short fragments. Taking these short fragments as templates, random hexamer-primer is used to synthesize the first-strand cDNA. The second-strand cDNA is synthesized using buffer, dNTPs, RNaseH and DNA polymerase I, respectively. Short fragments are purified with QiaQuick PCR extraction kit and resolved with EB buffer for end reparation and adding poly(A). After that, the short fragments are connected with sequencing adapters. And, after the agarose gel electrophoresis, the suitable fragment are selected for the PCR amplification as templates. At last, the library could be sequenced using Illumina HiSeq 2000.

text: Siniperca chuatsi

text: Siniperca chuatsi

text: brain; liver

characteristic: organism part

text: Siniperca chuatsi


text: College of Fisheries, Huazhong Agriculture University

text: public

text: ArrayExpress

text: mandarin fish

text: Siniperca chuatsi

text: Siniperca chuatsi

text: brain; liver

text: Siniperca chuatsi


text: NAAS

text: public

text: Japanese rice

text: Whole genome resequencing of the Korean rice, Hwacheong, using Illumina Hiseq 2000

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group


text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_ALLPax55490706-sc-2013-03-21T15:01:06Z-1584607

text: house mouse

text: Mus musculus

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: DMSO

characteristic: ArrayExpress-Compound

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 24 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Obmel_11-sc-2012-11-08T12:08:32Z-1511670

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

characteristic: sample description

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: DMSO

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Obmel_12-sc-2012-11-08T12:08:49Z-1511671

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: MELATONIN

text: 100 nM

characteristic: ArrayExpress-Dose

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Obmel_15-sc-2012-11-08T12:08:52Z-1511674

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: DMSO

characteristic: ArrayExpress-Compound

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: 48 hours

text: SC

text: public

text: Obmel_21-sc-2012-11-08T12:09:39Z-1511680

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: MELATONIN

text: 100 nM

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 48 hours

characteristic: ArrayExpress-TimePoint

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Obmel_24-sc-2012-11-08T12:11:08Z-1511683

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

characteristic: sample description

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: MELATONIN

text: 100 nM

characteristic: ArrayExpress-Dose

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Obmel_14-sc-2012-11-08T12:08:51Z-1511673

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

characteristic: ArrayExpress-Compound

text: 100 nM

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 24 hours

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Obmel_17-sc-2012-11-08T12:08:54Z-1511676

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: DMSO

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: 48 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Obmel_20-sc-2012-11-08T12:09:06Z-1511679

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: MELATONIN

text: 100 nM

characteristic: ArrayExpress-Dose

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 48 hours

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Obmel_23-sc-2012-11-08T12:10:49Z-1511682

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

characteristic: sample description

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

characteristic: ArrayExpress-Compound

text: 100 nM

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

text: 48 hours

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Obmel_26-sc-2012-11-08T12:12:01Z-1511685

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: DMSO

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

text: 24 hours

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Obmel_10-sc-2012-11-08T12:16:06Z-1511669

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Aarhus University, Department of Molecular Biology and Genetics

text: ArrayExpress

characteristic: broker name

text: pig

text: Protocols: At an average weight of approximately 30 kg the offspring was transferred to the finishing unit. Slaughtering was done when the largest pig in the pen reached 110 kg. Blood samples were collected from the sows and muscle, lung and liver tissue from the boar and offspring were sampled at slaughter. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3prime to 5prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: description

text: Single boar founder family

characteristic: family history

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: longissimus dorsi

characteristic: organism part

text: Sus scrofa

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Aarhus University, Department of Molecular Biology and Genetics

characteristic: INSDC center name

text: public

text: ArrayExpress

text: pig

text: Single boar founder family

text: Sus scrofa

text: Sus scrofa

text: longissimus dorsi

text: Sus scrofa


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: WES_CME5418418-sc-2012-11-06T14:15:44Z-1509068

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

characteristic: ArrayExpress-Compound

text: 100 nM

characteristic: ArrayExpress-Dose

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 24 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Obmel_16-sc-2012-11-08T12:08:53Z-1511675

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

characteristic: sample description

text: Mus musculus

characteristic: strain


text: OSTEOBLASTS

text: DMSO

text: Wildtype

text: Calvaria

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: 48 hours

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Obmel_19-sc-2012-11-08T12:08:56Z-1511678

text: house mouse

characteristic: common name

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: MELATONIN

characteristic: ArrayExpress-Compound

text: 100 nM

text: Wildtype

text: Calvaria

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: 48 hours

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Obmel_25-sc-2012-11-08T12:11:36Z-1511684

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from Osteoblasts

text: Mus musculus


text: OSTEOBLASTS

text: DMSO

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: 24 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus


text: Homo Sapien

text: SC

text: public

characteristic: SRA accession

text: SC_GMWOF5428736-sc-2012-12-06T12:02:56Z-1519974

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


E-MTAB-1241:gH2AX ChIP

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-1241:gH2AX ChIP

tag: Namespace:1 Universite de Toulouse ; UPS ; LBCMCP ; 118 route de Narbonne, 31062, Toulouse, France

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: compound

text: Protocols: U20S AsiSI-ER cells were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with antibiotics and 10% FCS (Invitrogen) at 37 C under a humidified atmosphere with 5% CO2. Cells were treated with 300 nM 4OHT for 4 hours ChIP assays were carried out according the protocol described in (Iacovoni et al, 2010). Briefly, 200 ug of chromatin was subjected to immunoprecipitation using 2 ug of a gammaH2AX antibody (Epitomics 2212-1), XRCC4 (Abcam), or Rad51 (Santa Cruz). For ChIP against PolII-S2P (Abcam) 50 ug of chromatin was used, instead of 200 ug. After the washes the beads/chromatin complexes were re-suspended in 200 uL of TE buffer (Tris 10mM pH8, EDTA 0,5mM pH8) and were directly subjected to crosslink reversal in presence of 0,5% SDS overnight at 70 C. Following crosslink reversion, all immunoprecipitated DNA and input DNA were purified by phenol/chloroform, followed by DNA precipitation. DNA amount was quantified using the Quant-iTTM kit from Invitrogen. 10ng of DNA was next used for sequencing.

characteristic: description

text: 300 nanomolar

characteristic: dose

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: gH2AX ChIP

characteristic: title


E-MTAB-1241:XRCC4_2 ChIP

characteristic: External Id

text: 1 Universite de Toulouse ; UPS ; LBCMCP ; 118 route de Narbonne, 31062, Toulouse, France

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-1241:XRCC4_2 ChIP

text: ArrayExpress

text: human

characteristic: common name

text: 300 nanomolar

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: XRCC4_2 ChIP


E-MTAB-1241:XRCC4_1 ChIP

text: public

text: E-MTAB-1241:XRCC4_1 ChIP

text: ArrayExpress

text: human

text: 300 nanomolar

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: XRCC4_1 ChIP


E-MTAB-1241:PolII-S2P ChIP

text: public

characteristic: INSDC status

text: E-MTAB-1241:PolII-S2P ChIP

text: ArrayExpress

text: human

text: 300 nanomolar

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: PolII-S2P ChIP


E-MTAB-1241:Rad51_2 ChIP

text: public

characteristic: SRA accession

text: E-MTAB-1241:Rad51_2 ChIP

text: ArrayExpress

text: human

text: 300 nanomolar

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Rad51_2 ChIP


E-MTAB-1241:Rad51_1 ChIP

text: public

text: E-MTAB-1241:Rad51_1 ChIP

characteristic: Submitter Id

text: ArrayExpress

text: human

text: 300 nanomolar

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Rad51_1 ChIP


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: pig

text: Protocols: Ten different tissues from two unrelated one year old Landrace boars were included in the study. Hence, total RNA was extracted from heart, spleen, liver, kidney, lung, musculus longissimus dorsi, occipital cortex, hypothalamus, frontal cortex, and cerebellum employing the mirVanaTM RNA extraction kit (Ambion) according to manufacturers protocol, yielding a total of 20 samples. RNA integrity was assessed by manual inspection of the individual RNA samples on a 2% agarose gel. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3 prime to 5 prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: Longissimus dorsi

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: pig

text: Sus scrofa

text: Sus scrofa

text: kidney

text: Sus scrofa

text: male


text: public

text: ArrayExpress

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: liver

text: Sus scrofa

text: male


text: public

text: ArrayExpress

text: pig

text: Sus scrofa

text: Sus scrofa

text: spleen

text: Sus scrofa

text: male

characteristic: title


characteristic: External Id

text: public

text: ArrayExpress

text: pig

text: Sus scrofa

text: Sus scrofa

text: frontal cortex

text: Sus scrofa

text: male


characteristic: INSDC center name

text: public

text: ArrayExpress

text: pig

text: Sus scrofa

text: Sus scrofa

text: cerebellum

text: Sus scrofa

text: male


characteristic: INSDC first public

text: public

text: ArrayExpress

text: pig

text: Sus scrofa

text: Sus scrofa

text: hypothalamus

text: Sus scrofa

text: male


characteristic: INSDC last update

text: public

text: ArrayExpress

text: pig

text: Sus scrofa

text: Sus scrofa

text: Occipital cortex

text: Sus scrofa

text: male


text: public

text: ArrayExpress

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: lung

text: Sus scrofa

text: male


text: public

text: ArrayExpress

text: pig

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: heart

text: Sus scrofa

text: male


text: University of Liverpool

text: public

characteristic: INSDC status

tag: Namespace:University of Liverpool

text: 15 year

characteristic: age

text: abattoir

characteristic: biosource provider

text: fresh sample

characteristic: biosource type

text: ArrayExpress

text: chondrocyte

characteristic: cell type

text: horse

text: Protocols: Full thickness cartilage was removed from the entire surface of MCPII.All samples were scored macroscopically to determine any pathological abnormalities of the distal condyles of the distal third metacarpus. For RNA extraction the Guanidium-thiocyanate-phenol-chloroform technique, with ethanol extraction was used (Chomczynski, P. and N. Sacchi, Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem, 1987

text: normal

characteristic: disease state

text: Equus caballus

text: Equus caballus

text: cartilage

text: Equus caballus


characteristic: ENA-FIRST-PUBLIC

text: University of Liverpool

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 4 year

text: abattoir

text: fresh sample

text: ArrayExpress

text: chondrocyte

text: horse

text: normal

text: Equus caballus

text: Equus caballus

text: cartilage

characteristic: organism part

text: Equus caballus


characteristic: ENA-LAST-UPDATE

text: MRC-LMB

text: public

text: 18 day

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Tissue was dissociated in ice-cold PBS buffer. Material was then subjected to UV-C irradiation. Cells were then precipitated by centrifugation for 1 min at 14000 rpm and snap-frozen on dry ice. iCLIP protocol was followed to isolate RNA bound to FUS, TDP-43 or U2AF65 protein and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction, and are specified below for each sequencing run. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina pair-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3

characteristic: description

text: embryo

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

characteristic: title


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_NRAS5248834-sc-2013-07-31T15:10:48Z-1305783

text: goldfish

characteristic: common name

text: Carassius auratus

text: Carassius auratus


text: Homo sapiens

text: SC

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Danio rerio

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: SC_NRAS5248835-sc-2013-07-31T15:10:49Z-1305784

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248836-sc-2013-07-31T15:10:50Z-1305785

characteristic: Submitter Id

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC_NRAS5248838-sc-2013-07-31T15:10:51Z-1305787

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: public

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: Longissimus dorsi

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex


text: public

text: ArrayExpress

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: liver

text: Sus scrofa

text: male

characteristic: title


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: SC_NRAS5248839-sc-2013-07-31T15:10:52Z-1305788

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_NRAS5248842-sc-2013-07-31T15:10:55Z-1305791

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Aarhus University, Department of Molecular Biology and Genetics

text: public

characteristic: INSDC status

text: ArrayExpress

text: pig

characteristic: common name

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: frontal cortex

text: Sus scrofa

text: male


text: Danio rerio

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: SC_NRAS5248843-sc-2013-07-31T15:10:56Z-1305792

characteristic: Submitter Id

text: goldfish

text: Carassius auratus

text: Carassius auratus


characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: hypothalamus

text: Sus scrofa

text: male


text: public

text: ArrayExpress

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: lung

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex


text: Danio rerio

characteristic: ArrayExpress-Species

text: TL

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: SL3_07_G3b-sc-2011-10-31T09:31:30Z-1281616

text: zebrafish

text: Danio rerio

text: Exome

characteristic: sample description

text: Danio rerio

text: TL

characteristic: strain


text: Danio rerio

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_NRAS5248844-sc-2013-07-31T15:10:57Z-1305793

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: NAPG5237738-sc-2011-10-31T09:36:30Z-1291024

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Homo Sapien

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 2014STDY5345488-sc-2012-05-25T10:41:11Z-1419620

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: WB_2748_05_TotalR-sc-2012-05-23T10:41:30Z-1425527

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248846-sc-2013-07-31T15:10:59Z-1305795

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248847-sc-2013-07-31T15:11:00Z-1305796

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248851-sc-2013-07-31T15:11:04Z-1305800

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: female

text: Homo Sapien

text: SC

text: public

text: CDX5125486-sc-2011-05-26T09:58:22Z-1150765

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248852-sc-2013-07-31T15:11:05Z-1305801

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: ZFOS_860E4-sc-2012-02-29T12:45:37Z-1372598

text: zebrafish

text: Danio rerio

text: Danio rerio


E-MTAB-1197:GGB04410M (R1 in text)

text: Fasteris, Geneva, Switzerland

text: public

text: E-MTAB-1197:GGB04410M (R1 in text)

tag: Namespace:Fasteris, Geneva, Switzerland

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Cells were grown in RPMI with 20% FBS, non-essential amino acids and penicillin/streptomycin Total RNA was extracted with Macherey-Nagel Nucleospin RNA II kit

characteristic: description

text: normal

characteristic: disease state

text: Normal heterozygous

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lymphoblasts

characteristic: organism part

text: Homo sapiens

text: GGB04410M (R1 in text)

characteristic: title


text: Danio rerio

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC_NRAS5248855-sc-2013-07-31T15:11:07Z-1305804

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Homo sapiens

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TRVP776074-sc-2011-07-06T15:32:25Z-785141

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

text: public

characteristic: SRA accession

text: SC_NRAS5248859-sc-2013-07-31T15:11:10Z-1305808

text: goldfish

characteristic: common name

text: Carassius auratus

characteristic: organism

text: Carassius auratus


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC_NRAS5248860-sc-2013-07-31T15:11:11Z-1305809

characteristic: Submitter Id

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248864-sc-2013-07-31T15:11:15Z-1305813

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248866-sc-2013-07-31T15:11:17Z-1305815

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248867-sc-2013-07-31T15:11:18Z-1305816

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248868-sc-2013-07-31T15:11:19Z-1305817

text: goldfish

text: Carassius auratus

text: Carassius auratus


E-MTAB-1394:SAOS input

text: University of Marburg

text: public

text: E-MTAB-1394:SAOS input

tag: Namespace:University of Marburg

text: ArrayExpress

characteristic: broker name

text: SAOS

characteristic: cell line

text: human

text: Protocols: SAOS cells were cultured in Dulbecco's modified Eagle's medium (Life Technologies) supplemented with 10 % fetal bovine serum (PAA) and penicillin/streptomycin (Life Technologies) using standard conditions and procedures. Cells were transduced with recombinant adenovirus containing p53 wildtype, p53 R181E mutant, p53 E180R mutant, p53 R181E_E180R double mutant or GFP as previously described (Cam et al., 2006). ChIP was perfomed with a p53-specific antibody. The DNA was purified with the Qiaquick PCR purification Kit (Qiagen).

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: SAOS input


text: University of Marburg

text: public

text: ArrayExpress

text: SAOS

text: human

text: Anti-p53, sc-126, Santa-cruz

characteristic: immunoprecipitate

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title

characteristic: transfection


characteristic: External Id

text: University of Marburg

characteristic: INSDC center name

text: public

text: ArrayExpress

text: SAOS

text: human

text: Anti-p53, sc-126, Santa-cruz

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: SAOS+GFP

text: mock


characteristic: ENA-FIRST-PUBLIC

text: University of Marburg

characteristic: INSDC first public

text: public

text: ArrayExpress

text: SAOS

text: human

text: Anti-p53, sc-126, Santa-cruz

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: EE/RR


text: University of Marburg

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: SAOS

text: human

text: Anti-p53, sc-126, Santa-cruz

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: RR


text: University of Marburg

text: public

characteristic: SRA accession

text: ArrayExpress

text: SAOS

text: human

characteristic: common name

text: Anti-p53, sc-126, Santa-cruz

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: EE


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SC_NRAS5248871-sc-2013-07-31T15:11:21Z-1305820

text: goldfish

text: Carassius auratus

characteristic: organism

text: Carassius auratus


text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 2042STDY5251922-sc-2011-11-30T14:47:02Z-1309246

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248874-sc-2013-07-31T15:11:24Z-1305823

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248875-sc-2013-07-31T15:11:24Z-1305824

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248876-sc-2013-07-31T15:11:26Z-1305825

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: SC

text: public

text: house mouse

text: Mus musculus

text: Input

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248878-sc-2013-07-31T15:11:27Z-1305827

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: SC

text: public

text: RolandsMouseTumoursFeb2011-sc-2011-03-23-1101569

text: western European house mouse

text: Mus musculus domesticus

text: Mus musculus domesticus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248882-sc-2013-07-31T15:11:31Z-1305831

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248883-sc-2013-07-31T15:11:32Z-1305832

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248884-sc-2013-07-31T15:11:33Z-1305833

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Homo Sapien

text: SC

text: public

text: KUU25220225-sc-2011-09-30T11:34:19Z-1270641

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248886-sc-2013-07-31T15:11:34Z-1305835

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248890-sc-2013-07-31T15:11:38Z-1305839

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Haemonchus contortus

text: SC

text: public

text: barber pole worm

text: Haemonchus contortus

text: bacterial artificial chromosome (BAC)

text: Haemonchus contortus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248891-sc-2013-07-31T15:11:39Z-1305840

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248892-sc-2013-07-31T15:11:40Z-1305841

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: female

text: Mus musculus

text: SC

text: public

text: Bikoff_NOD_26L-sc-2011-04-19T13:22:19Z-1046904

text: house mouse

text: Mus musculus

text: mutant lacking a spleen

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: maguin_2_rnaseq-sc-2012-02-06T13:06:07Z-1001665

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248894-sc-2013-07-31T15:11:41Z-1305843

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: TL

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: SL3_09_B9b-sc-2011-10-31T09:34:53Z-1281931

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: Yeast

characteristic: External Id

text: SC

text: public

text: SC_MFY5287935-sc-2012-02-02T14:10:55Z-1349355

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Danio rerio

text: SC

characteristic: INSDC center name

text: public

text: SC_NRAS5248898-sc-2013-07-31T15:11:45Z-1305847

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC_NRAS5248899-sc-2013-07-31T15:11:46Z-1305848

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

characteristic: INSDC first public

text: public

text: SC_NRAS5248902-sc-2013-07-31T15:11:48Z-1305851

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

characteristic: INSDC last update

text: public

text: SC_NRAS5248903-sc-2013-07-31T15:11:49Z-1305852

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

characteristic: INSDC status

text: SC_NRAS5248906-sc-2013-07-31T15:11:52Z-1305855

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

characteristic: SRA accession

text: SC_NRAS5248910-sc-2013-07-31T15:11:55Z-1305859

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248914-sc-2013-07-31T15:11:59Z-1305863

text: goldfish

characteristic: common name

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_NRAS5248915-sc-2013-07-31T15:12:00Z-1305864

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

characteristic: ENA-CHECKLIST

text: SC

text: public

text: SC_NRAS5248918-sc-2013-07-31T15:12:03Z-1305867

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248922-sc-2013-07-31T15:12:07Z-1305871

text: goldfish

text: Carassius auratus

characteristic: organism

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248923-sc-2013-07-31T15:12:08Z-1305872

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248926-sc-2013-07-31T15:12:10Z-1305875

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: Danio rerio

text: SC

text: public

text: SC_NRAS5248927-sc-2013-07-31T15:12:11Z-1305876

text: goldfish

text: Carassius auratus

text: Carassius auratus


text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

text: 2 month

characteristic: age

characteristic: bio source type

text: ATCC

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: myelomonocyte

characteristic: cell type

text: human

text: Protocols: OCIAML3 cells were grown in RPMI-1640 medium (Sigma-Aldrich) supplemented with 80% alpha-MEM + 20% fetal calf serum and 1% penicillin/streptomycin. Cells were incubated at 37C and 5% CO2. OCIAML3 cells were treated for 6 h with either I-BET151, leptomycin B (LMB) or DMSO (vehicle) alone. From these cells, chromatin was prepared and chromatin immunoprecipitation was performed using an anti-BRD4 antibody (ab75898, Abcam). Cells were crosslinked with 1% (v/v) formaldehyde for 15 min at room temperature; crosslinking was stopped by the addition of 0.125 M glycine. Cells were then lysed in 1% (w/v) SDS, 10 mM EDTA, 50 mM Tris-HCl pH 8.0, 1 mM sodium orthovanadate and protease inhibitors. Cells were sonicated in a Bioruptor (Diagenode) to achieve a mean DNA fragment size of 500 base pairs. An equal volume of Protein-A and Protein-G agarose beads, pre-absorbed with sonicated salmon-sperm DNA and BSA, were used to preclear the chromatin for 2 h before immunoprecipitation. Immunoprecipitation was performed for a minimum of 12 h at 4C in modified RIPA buffer (1% (v/v) Triton X-100, 0.1% (w/v) sodium deoxycholate, 0.1% (w/v) SDS, 90 mM NaCl, 10 mM Tris-HCl pH 8.0, 1 mM sodium orthovanadate, EDTA-free protease inhibitors). An equal volume of Protein-A and Protein-G agarose beads, pre-absorbed with sonicated salmon-sperm DNA and BSA, were used to bind the antibody and associated chromatin. The beads were washed before elution of the antibody-bound chromatin. Reverse crosslinking of DNA was followed by DNA purification with the QIAquick PCR purification kit (Qiagen). Immunoprecipitated DNA was amplified for sequencing using TaqMan PCR mastermix according to the manufacturers instructions. ChIP libraries used for massive parallel sequencing were prepared using the Illumina ChIP-seq kit with the following adjustments. Following chromatin immunoprecipitation and DNA purification, 10-50ng of DNA was used to perform end repair of the ChIP DNA. The following reaction mix was used, DNA (10-50ng resuspended in 30 ml), DNase and RNase free ddH2O 10 ml, T4 DNA ligase buffer with 10 mM ATP 5 ml, 10 mM dNTP mix 2 ml, T4 DNA polymerase 1 ml, Klenow DNA polymerase 1 ml and T4 PNK 1 ml. The sample was incubated for 30 min at 20 C and then purified using the Zymo DNA Clean & Concentrator-5O kit with the DNA eluted in 11 ml of ddH2O. Following end repair adenine bases were added to the 30 end of the DNA fragments using DNA from above 11 ml, ddH2O 33 ml, Klenow buffer 5 ml, dATP 10 ml and Klenow (30 to 50 exonuclease deficient) 1 ml. The sample was incubated for 30 min at 37 C and the DNA was purified using the Zymo kit. Commercially supplied adapters (Illumina; the sequence is commercially protected) were then ligated to the DNA fragments using DNA ligase buffer 14 ml, adaptor oligonucleotide mix 2 ml, DNA ligase 4 ml and DNA 10 ml. The reaction was incubated for 15 min at room temperature and DNA purified using the Zymo kit. Following the ligation of adapters the DNA was amplified by PCR. The reaction conditions included DNA 10 ml, ddH2O 26 ml, 5X Phusion buffer 10 ml, 10 mM dNTP mix 1.5 ml, Phusion polymerase 0.5 ml and 1 ml of both forward and reverse PCR primers the sequence of which is commercially protected. The reaction conditions are as follows: 98 C, 30 s; 98 C, 10 s; 65 C, 30 s; 72 C, 30 s; back to 2 (18 cycles); 72 C for 5 min. Following PCR amplification, the DNA was purified using the MinElute PCR purification kit (QIAGEN). The clean DNA was then size fractionated in a 1.5% agarose gel. Each sample was run in isolation in the gel in a dedicated clean agarose tank in 1 X TAE buffer. The gel was subsequently stained with SybrGreen in a clean staining tank for 1 hr. Following this, 200 -400 bp fragments were excised from the DNA smear present on the gel, and purified using the MinElute QIAGEN Gel-Purification Kit. The completed library was then tested for both size selection and quantity of DNA using a 2100 Agilent Bioanalyser.

characteristic: description

text: acute myeloid leukemia

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: NPM1c AML

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


text: Danio rerio

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: goldfish

characteristic: common name

text: Carassius auratus

text: Carassius auratus


text: EMBL-EBI

text: public

text: 3-6 month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: harvest liver from 3-6 month old mice Extraction.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease state

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: strain or line


characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: 3-6 month

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: AJ

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 3-6 month

text: ArrayExpress

text: house mouse

text: adult

text: normal

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: CEBPa KO


text: EMBL-EBI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3-6 month

text: ArrayExpress

text: Ryukyu mouse

text: adult

text: normal

text: Mus caroli

text: Mus caroli

text: liver

text: Mus caroli

text: male

text: Caroli


text: EMBL-EBI

text: public

text: 3-6 month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: southeastern Asian house mouse

characteristic: common name

characteristic: description

text: adult

text: normal

text: Mus castaneus

text: Mus musculus castaneus

text: liver

text: Mus musculus castaneus

text: male

text: CAST


text: EMBL-EBI

text: public

text: 3-6 month

text: ArrayExpress

text: house mouse

text: adult

characteristic: developmental stage

text: normal

characteristic: disease state

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: HNF4A KO

characteristic: strain or line


characteristic: ENA-FIRST-PUBLIC

text: EMBL-EBI

text: public

text: 3-6 month

text: ArrayExpress

text: western wild mouse

text: adult

text: normal

text: Mus spretus

text: Mus spretus

text: liver

characteristic: organism part

text: Mus spretus

text: male

characteristic: sex

text: SPRET

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 3-6 month

text: ArrayExpress

text: western wild mouse

text: adult

text: normal

text: Mus spretus

text: Mus spretus

text: liver

text: Mus spretus

text: female

text: SPRET


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2052STDY5456244-sc-2013-01-14T08:06:32Z-1548151

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 2052STDY5456247-sc-2013-01-14T08:06:35Z-1548154

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 2052STDY5456250-sc-2013-01-14T08:06:39Z-1548157

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 2052STDY5456253-sc-2013-01-14T08:06:42Z-1548160

text: house mouse

text: Mus musculus

text: Mus musculus


text: University of Cambridge

text: public

text: 2 year

characteristic: age

text: Takehido Kobayashi

characteristic: biosource provider

text: frozen sample

characteristic: biosource type

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: Yeast cells were grown to mid-logarithmic phase before fixation Cells were fixed with 1% formaldehyde for 45 minutes at room temperature, washed with PBS and resuspended in 500ul of SDS lysis buffer (1% SDS, 10mM EDTA, 50mM Tris HCl (8.0), 0.5mM PMSF-EtOH, 0.8_g/ml pepstatin A, 0.6_g/ml leupeptin). Cells were lysed by bead-beating 4x 1min with 3min on ice in between. Cell debris was removed by centrifugation and lysates were sonified for 30min in a constantly water-cooled Bioruptor. Sonified lysates were centrifuged and the supernatant was diluted 1:10 into IP-buffer (0.01% SDS, 1.1%Triton-X-100, 1.2mM EDTA, 16.7MM Tris HCl (8.0), 167mM NaCl, 0.5mM PMSF, 0.8_g/ml Pepstatin A, 0.6_g/ml leupeptin). Antibodies were added (1ug each of IgG (ab37415), H2A (Active Motif 39235) and 1/500 dilution of H2AQ105me) over night. Next day, 30ul of a Protein A/G Dynabead mix was added and beads were incubated for 1h. Subsequently, beads were washed with 1ml each TSE150 (1% Triton-X-100, 0.1%SDS, 2mM EDTA, 20mM Tris HCl (8.0), 150mM NaCl), TSE500 (1% Triton-X-100, 0.1%SDS, 2mM EDTA, 20mM Tris HCl (8.0), 500mM NaCl), and LiCl-buffer (0.25M LiCl, 1% NP-40, 1% dioxycholate, 1mM EDTA, 10mM Tris HCl (pH8.0)). Finally, beads were wahed with 1ml TE and eluted with elution buffer (1% SDS, 0.1M NaHCO3) for 30min at room temperature. 500mM NaCL (final) was added and crosslinks were reversed at 95oC for 30min. Samples were treated with 50ug RNase/DNase free. Samples were purified with the Qiagen PCR purification kit following manufacturer's guidelines.

characteristic: description

text: Mata ade2-1 ura3-1 his3-11 trp1-1 leu2-3,112 can1-100 fob1D::LEU2 (20 rDNA copies)

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


E-MTAB-1447:IgG Control

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

text: public

text: E-MTAB-1447:IgG Control

text: 2 year

text: Takehido Kobayashi

text: frozen sample

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain or line

text: IgG Control

characteristic: title


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2052STDY5456246-sc-2013-01-14T08:06:34Z-1548153

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2052STDY5456249-sc-2013-01-14T08:06:38Z-1548156

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: 2052STDY5456252-sc-2013-01-14T08:06:41Z-1548159

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:Centre for Organismal Studies (COS) - University of Heidelberg

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: house mouse

text: Protocols: Neural stem cells cultured in either proliferation-promoting medium (proNSC) or quiescence-promoting medium (quiNSC) Chromatin Immunoprecipitation with antibodies to H3K27ac (Abcam, ab4729), p300 (Santa Cruz, sc-585) and NFI transcription factors (Santa Cruz, sc-30918).

text: wild type

text: quiescence-promoting medium

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: Centre for Organismal Studies (COS) - University of Heidelberg

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: wild type

characteristic: genotype

text: proliferation-promoting medium

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: public

text: ArrayExpress

text: house mouse

text: wild type

text: quiescence-promoting medium

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 2052STDY5456242-sc-2013-01-14T08:06:30Z-1548149

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2052STDY5456248-sc-2013-01-14T08:06:36Z-1548155

text: house mouse

text: Mus musculus

text: Mus musculus


text: EMBL-EBI

characteristic: INSDC last update

text: public

text: 3-6 month

characteristic: age

text: ArrayExpress

characteristic: cell type

text: Norway rat

text: Protocols: Harvest liver from 3-6 month old mice Extraction.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease state

text: wild-type

text: Rattus norvegicus

text: Rattus norvegicus

text: Liver

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex stage


text: NIEHS/NIH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primary derived

characteristic: cell line

text: embryonic fibroblast

text: chicken

characteristic: common name

text: Protocols: Cultured primary embryonic chicken fibroblasts (GgFf60) were treated with 10% fetal bovine serum for 60 min; Cultured HD11 chicken macrophages (GgDH60) were treated with lipopolysaccharides (LPS, 1 ug/ml) for 60 min Total RNA was isolated using the GE Healthcare RNA spin kit

text: Gallus gallus

text: Gallus gallus

text: Gallus gallus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIEHS/NIH

text: public

text: ArrayExpress

text: macrophage

text: chicken

characteristic: description

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: Gallus gallus

characteristic: title


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_GMWOF5428859-sc-2013-02-05T15:32:35Z-1520097

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

characteristic: INSDC status

text: SC_GMWOF5428865-sc-2013-02-05T15:32:41Z-1520103

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

characteristic: SRA accession

text: SC_GMWOF5428871-sc-2013-02-05T15:32:47Z-1520109

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428874-sc-2013-02-05T15:32:50Z-1520112

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428877-sc-2013-02-05T15:32:53Z-1520115

text: human

text: Homo sapiens

text: Homo sapiens


text: macrophages

characteristic: ArrayExpress-CellType

text: Wildtype

characteristic: ArrayExpress-Genotype

text: mus musculus

text: SC

text: public

text: E14_iCreiFlp_ESC_derived_macrophage_uninfected_1-sc-2013-03-11T09:26:09Z-1581605

text: house mouse

text: Mus musculus

text: RNA from macrophages derived from murine embryonic stem cells

characteristic: sample description

text: Mus musculus


text: macrophages

text: Wildtype

text: mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: E14_iCreiFlp_ESC_derived_macrophage_uninfected_4-sc-2013-03-11T09:26:16Z-1581608

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Unite Genetique Animale et Biologie Int?grative

text: Limousin

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: cattle

text: Protocols: muscle biopsies were obtained at the slaughterhouse Qiagen RNAeasy Midi protocol 4 ug of total RNA were used with Illumina TruSeq RNA sample preparation kit to make the paired-end RNA-Seq libraries; size selection of 200+/-25 bp fragments

characteristic: description

text: Bos taurus

text: Bos taurus

text: longissimus thoracis (muscle)

characteristic: organism part

characteristic: replicate

text: Bos taurus

text: male

characteristic: sex


characteristic: External Id

text: Unite Genetique Animale et Biologie Int?grative

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Limousin

text: ArrayExpress

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: longissimus thoracis (muscle)

text: Bos taurus

text: male

characteristic: title


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC_GMWOF5428855-sc-2013-02-05T15:32:31Z-1520093

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC_GMWOF5428858-sc-2013-02-05T15:32:34Z-1520096

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428861-sc-2013-02-05T15:32:37Z-1520099

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428867-sc-2013-02-05T15:32:43Z-1520105

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428873-sc-2013-02-05T15:32:48Z-1520111

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428879-sc-2013-02-05T15:32:55Z-1520117

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428851-sc-2013-02-05T15:32:25Z-1520089

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428854-sc-2013-02-05T15:32:29Z-1520092

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428857-sc-2013-02-05T15:32:33Z-1520095

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428863-sc-2013-02-05T15:32:39Z-1520101

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428866-sc-2013-02-05T15:32:42Z-1520104

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428869-sc-2013-02-05T15:32:45Z-1520107

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428875-sc-2013-02-05T15:32:51Z-1520113

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428882-sc-2013-02-05T15:32:57Z-1520120

text: human

text: Homo sapiens

text: Homo sapiens


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMWOF5428906-sc-2013-02-05T15:33:05Z-1520144

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus musculus

text: SC

text: public

text: MD4954c3-sc-2013-02-12T15:06:50Z-1564885

text: house mouse

text: Mus musculus

text: Mus musculus


text: public

tag: Namespace:Laboratory of Molecular Medicine and Genomics, University of Salerno

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: Human breast cancer MCF-7 wt were used to produce stable clones expressing ER-beta tagged with TAP-tag respectively at the C-term(Ct-ER-beta ) as previously described. All were grown in Dulbecco's modified Eagle's medium (DMEM), supplemented with 10% fetal bovine serum (FBS) (both from Invitrogen SpA, San Giuliano, Milanese, Italy), 100 U/ml penicillin, 100 mg/ml streptomycin, 250 ng/ml Amfotericin-B, 50 ug/ml G418 (normal growing condition) For G0-G1 synchronization cells were plated at 40% confluence in steroid-free medium (phenol red-free DMEM medium, with 5% fetal bovine serum pre-treated with dextran-coated charcoal and antibiotics) and maintained for 5 days without any additional scompound Cells were harvested in absence of estrogen stimuli Determination of miRNA expression profiles was performed by next generation sequencing (NGS) with sequencing-by-synthesis technology, since this allows a dynamic range of detection (from very low to highly abundant RNAs) and to measure relatively limited differences in expression between samples. 7.5ug of total RNA was used in a library preparation according to the Illumina TruSeq small RNA sample preparation protocol (Illumina, USA).

characteristic: description

text: breast cancer

characteristic: disease state

text: wt

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: Laboratory of Molecular Medicine and Genomics, University of Salerno

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: breast cancer

text: ER-beta

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: Mus Musculus

text: SC

text: public

text: SC_MUSPA5465651-sc-2013-02-14T11:56:09Z-1558303

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_MUSPA5465654-sc-2013-02-14T11:56:14Z-1558306

text: house mouse

text: Mus musculus

text: Mus musculus


text: Aalborg University

characteristic: INSDC last update

text: public

tag: Namespace:Aalborg University

text: ArrayExpress

text: human

text: Protocols: An otherwise normal eye suffering from malignant melanoma of the retinal pigment epithelium layer was procured, and the corneo-limbal region was isolated and processed immediately after enucleation at the operation theatre to preserve the integrity of material. Tissue blocks were processed into 10 um serial sections using an HM 505 N (Microm International, Germany) cryostat and mounted on Superfrost Plus glass slides (Thermo Fisher Scientific, Waltham, MA) for phase contrast inspection of niche structures. The selected sections were then transferred onto UV irradiated (3000 uJ/cm2) PEN (polyethylene naphtalate)-membrane metal-framed slides (Life Technologies, Naerum, Denmark), and fixed in 70% ethanol at -30C for 2 min. Staining procedure was completed inside a laminar flow bench using RNase-free pap-jars (Evergreen Scientific, Los Angeles, CA) and reagents pre-cooled to 4C. In short, the slides were washed with water, counter-stained with 0.01% cresyl violet for 10 sec, and washed with 70% ethanol for 30 sec. Finally, the preparations were dehydrated with 100% ethanol for 2 min and xylene for 5 min. The slides were kept inside the pap-jars at room temperature to avoid condensation of water, which could activate endogenous RNases and interfere with LCM. Laser capture microdissection and RNA isolation. The stained tissue sections were sandwiched with Superfrost Plus glass slides to provide a support for dissection and capture in a Veritas 704 microdissection system (Arcturus Bioscience, Mountain View, CA), which was equipped with IR capture and UV cutting lasers. The particular arrangement of the specimen (inverse technique) offered distinctive benefits in minimizing the risk of contamination and enabling large capture area and constant laser settings. The efficiency of capture thus attained 100%, and the hands-on time to finalize the procedure was reduced greatly. The settings for IR laser pulse were power 100 mW, duration 2.7 msec, and hit frequency 1. The UV laser was set on a constant low power. Four discrete compartments were targeted, the basal limbal crypts (BLCs), the superficial limbal crypts (SLCs), the paracentral/central corneal epithelium, and the adjacent limbal stroma. Each of the four specific areas from a single tissue cryosection was comprehensively sampled and collected on individual CapSure Macro LCM Caps (Life Technologies). Single capture cap was used for up to three cryosections and altogether 15 cryosections were processed. To keep the exposure to less than 1 hour, only three specimens were handled at a time, and upon completion, the thermoplastic film overlaid samples were immediately stripped from the caps to be used for RNA extraction. The total RNA was isolated using PicoPure RNA isolation kit (Life Technologies) according to the manufacturers protocol, including an additional step of DNase I treatment (Sigma-Aldrich, St. Louis, MO), and stored at -140C until use. The integrity and concentration was determined in the Agilent Bioanalyzer 2100 (Agilent Technologies, Santa Clara, CA) using the Agilent RNA 6000 Pico Kit (Agilent Technologies). The total RNA was reverse-transcribed and amplified using Ovation RNA-Seq System V2 kit (NuGEN Technologies, San Carlos, CA), and after quantification of dsDNA by the Qubit kit (Life Technologies), the libraries were constructed for paired-end sequencing with the aid of a TruSeq DNA Sample Preparation Kit (Illumina, San Diego, CA). The libraries were quantified by a real-time PCR and further purified employing Agencourt AMPure XP beads (Beckman Coulter, Brea, CA). Finally, to assure optimal loading for cluster generation, the extracted libraries were quantified using KAPA Library Quant Kits (KAPA Biosystems, Woburn, MA).

text: melanoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: cornea structure

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Aalborg University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: melanoma

text: Homo sapiens

text: Homo sapiens

text: basal limbal crypts

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Aalborg University

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: melanoma

text: Homo sapiens

text: Homo sapiens

text: corneal stroma

text: Homo sapiens


text: Aalborg University

text: public

text: ArrayExpress

text: human

characteristic: description

text: melanoma

text: Homo sapiens

text: Homo sapiens

text: superficial limbal crypts

text: Homo sapiens


text: Mus Musculus

characteristic: External Id

text: SC

text: public

text: SC_MUSPA5465681-sc-2013-02-14T11:56:47Z-1558333

text: house mouse

text: Mus musculus

text: Mus musculus


text: Humanitas Clinical and Research Center

characteristic: INSDC center name

text: public

tag: Namespace:Humanitas Clinical and Research Center

text: ArrayExpress

text: cardiac myocyte

characteristic: cell type

text: house mouse

text: Protocols: 2-month-old male C57BL/6J mice were subjected under anesthesia to transverse aortic constriction for 1 week. Cardiomyocytes were isolated from the hearts at the end of perfusion with collagenase(collagenase type II). Immunoprecipitate DNA from Chromatin Immunoprecipitaion assay (ChIP) using antibody to H3K9ac,H3K27ac,H3K4me3, H3K79me2, H3K9me2, H3K9me3 and H3K27me3.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain or line


text: Danio rerio

characteristic: ArrayExpress-Species

text: TL/AB

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SL6_10_D12-sc-2013-02-21T15:18:06Z-1513977

text: zebrafish

text: Danio rerio

characteristic: organism

text: Exome

characteristic: sample description

text: Danio rerio

text: TL/AB

characteristic: strain


text: Danio rerio

text: TL/AB

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SL6_10_G12-sc-2013-02-21T15:18:08Z-1513980

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SL6_08_H4-sc-2013-02-21T15:14:02Z-1513725

text: zebrafish

characteristic: common name

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SL6_08_C5-sc-2013-02-21T15:14:04Z-1513728

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_F5-sc-2013-02-21T15:14:07Z-1513731

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A6-sc-2013-02-21T15:14:11Z-1513734

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_D6-sc-2013-02-21T15:14:13Z-1513737

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G6-sc-2013-02-21T15:14:16Z-1513740

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_B7-sc-2013-02-21T15:14:19Z-1513743

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_E7-sc-2013-02-21T15:14:22Z-1513746

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_H7-sc-2013-02-21T15:14:25Z-1513749

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_C8-sc-2013-02-21T15:14:28Z-1513752

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_F8-sc-2013-02-21T15:14:31Z-1513755

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A9-sc-2013-02-21T15:14:35Z-1513758

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_D9-sc-2013-02-21T15:14:37Z-1513761

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G9-sc-2013-02-21T15:14:40Z-1513764

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_B10-sc-2013-02-21T15:14:43Z-1513767

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_E10-sc-2013-02-21T15:14:46Z-1513770

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_H10-sc-2013-02-21T15:14:49Z-1513773

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_C11-sc-2013-02-21T15:14:52Z-1513776

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_F11-sc-2013-02-21T15:14:55Z-1513779

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A12-sc-2013-02-21T15:14:58Z-1513782

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_D12-sc-2013-02-21T15:15:01Z-1513785

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G12-sc-2013-02-21T15:15:04Z-1513788

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_C1-sc-2013-02-21T15:15:07Z-1513792

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_F1-sc-2013-02-21T15:15:10Z-1513795

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_A2-sc-2013-02-21T15:15:12Z-1513798

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_E8-sc-2013-02-21T15:11:18Z-1513562

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_A9-sc-2013-02-21T15:11:21Z-1513566

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_D9-sc-2013-02-21T15:11:24Z-1513569

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_C10-sc-2013-02-21T15:11:30Z-1513576

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_F10-sc-2013-02-21T15:11:34Z-1513579

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_E11-sc-2013-02-21T15:11:39Z-1513586

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_A12-sc-2013-02-21T15:11:42Z-1513590

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_06_D12-sc-2013-02-21T15:11:45Z-1513593

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_F1-sc-2013-02-21T15:11:54Z-1513603

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_A2-sc-2013-02-21T15:11:57Z-1513606

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_D2-sc-2013-02-21T15:12:00Z-1513609

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_G2-sc-2013-02-21T15:12:04Z-1513612

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: RAT

characteristic: ENA-CHECKLIST

text: SC

text: public

text: black rat

text: Rattus rattus

text: Rattus rattus


text: RAT

text: SC

text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_D11-sc-2013-02-21T15:13:16Z-1513681

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_G11-sc-2013-02-21T15:13:19Z-1513684

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_B12-sc-2013-02-21T15:13:21Z-1513687

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_E12-sc-2013-02-21T15:13:25Z-1513690

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A1-sc-2013-02-21T15:13:28Z-1513694

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G1-sc-2013-02-21T15:13:34Z-1513700

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_B2-sc-2013-02-21T15:13:37Z-1513703

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_E2-sc-2013-02-21T15:13:40Z-1513706

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_H2-sc-2013-02-21T15:13:43Z-1513709

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_C3-sc-2013-02-21T15:13:46Z-1513712

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_F3-sc-2013-02-21T15:13:51Z-1513715

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A4-sc-2013-02-21T15:13:54Z-1513718

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_D4-sc-2013-02-21T15:13:57Z-1513721

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G4-sc-2013-02-21T15:14:01Z-1513724

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_B5-sc-2013-02-21T15:14:03Z-1513727

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_E5-sc-2013-02-21T15:14:06Z-1513730

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_H5-sc-2013-02-21T15:14:09Z-1513733

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_C6-sc-2013-02-21T15:14:12Z-1513736

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_F6-sc-2013-02-21T15:14:15Z-1513739

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A7-sc-2013-02-21T15:14:18Z-1513742

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G7-sc-2013-02-21T15:14:24Z-1513748

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_B8-sc-2013-02-21T15:14:27Z-1513751

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_E8-sc-2013-02-21T15:14:30Z-1513754

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_H8-sc-2013-02-21T15:14:33Z-1513757

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_C9-sc-2013-02-21T15:14:37Z-1513760

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_A10-sc-2013-02-21T15:14:42Z-1513766

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_D10-sc-2013-02-21T15:14:45Z-1513769

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_G10-sc-2013-02-21T15:14:48Z-1513772

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_B11-sc-2013-02-21T15:14:51Z-1513775

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_E11-sc-2013-02-21T15:14:54Z-1513778

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_H11-sc-2013-02-21T15:14:57Z-1513781

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_C12-sc-2013-02-21T15:15:00Z-1513784

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_08_F12-sc-2013-02-21T15:15:03Z-1513787

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_E1-sc-2013-02-21T15:15:09Z-1513794

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_H1-sc-2013-02-21T15:15:12Z-1513797

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_C2-sc-2013-02-21T15:15:14Z-1513800

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_F2-sc-2013-02-21T15:15:17Z-1513803

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_D3-sc-2013-02-21T15:15:23Z-1513809

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_G3-sc-2013-02-21T15:15:27Z-1513812

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_B4-sc-2013-02-21T15:15:29Z-1513815

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_E4-sc-2013-02-21T15:15:32Z-1513818

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_H4-sc-2013-02-21T15:15:36Z-1513821

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_C5-sc-2013-02-21T15:15:39Z-1513824

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: RAT

text: SC

text: public

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_D2-sc-2013-02-21T15:15:15Z-1513801

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_G2-sc-2013-02-21T15:15:18Z-1513804

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_B3-sc-2013-02-21T15:15:21Z-1513807

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_E3-sc-2013-02-21T15:15:25Z-1513810

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_H3-sc-2013-02-21T15:15:28Z-1513813

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_C4-sc-2013-02-21T15:15:30Z-1513816

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_F4-sc-2013-02-21T15:15:34Z-1513819

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_A5-sc-2013-02-21T15:15:37Z-1513822

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_D5-sc-2013-02-21T15:15:40Z-1513825

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_09_G5-sc-2013-02-21T15:15:43Z-1513828

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB