text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270487-sc-2012-01-05T14:38:15Z-1330058

text: Caenorhabditis elegans

text: Caenorhabditis elegans


status: PUBLIC

text: Caenorhabditis elegans

tag: attribute

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2019STDY5270479-sc-2012-01-05T14:38:03Z-1330050

characteristic: Submitter Id

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

characteristic: title


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270478-sc-2012-01-05T14:38:01Z-1330049

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270492-sc-2012-01-05T14:38:22Z-1330063

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270474-sc-2012-01-05T14:37:54Z-1330045

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270508-sc-2012-01-05T14:38:51Z-1330079

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270448-sc-2012-01-05T14:37:04Z-1330019

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270519-sc-2012-01-05T14:39:11Z-1330090

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270436-sc-2012-01-05T14:36:40Z-1330007

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270509-sc-2012-01-05T14:38:53Z-1330080

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270444-sc-2012-01-05T14:36:56Z-1330015

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270480-sc-2012-01-05T14:38:05Z-1330051

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270475-sc-2012-01-05T14:37:56Z-1330046

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270491-sc-2012-01-05T14:38:21Z-1330062

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270518-sc-2012-01-05T14:39:10Z-1330089

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270525-sc-2012-01-05T14:39:23Z-1330096

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270510-sc-2012-01-05T14:38:55Z-1330081

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270445-sc-2012-01-05T14:36:58Z-1330016

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270447-sc-2012-01-05T14:37:02Z-1330018

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270457-sc-2012-01-05T14:37:21Z-1330028

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270505-sc-2012-01-05T14:38:44Z-1330076

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270486-sc-2012-01-05T14:38:14Z-1330057

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270455-sc-2012-01-05T14:37:17Z-1330026

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270446-sc-2012-01-05T14:37:00Z-1330017

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270517-sc-2012-01-05T14:39:08Z-1330088

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270467-sc-2012-01-05T14:37:41Z-1330038

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270476-sc-2012-01-05T14:37:58Z-1330047

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270511-sc-2012-01-05T14:38:57Z-1330082

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270458-sc-2012-01-05T14:37:23Z-1330029

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270466-sc-2012-01-05T14:37:38Z-1330037

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270477-sc-2012-01-05T14:37:59Z-1330048

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270497-sc-2012-01-05T14:38:30Z-1330068

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270437-sc-2012-01-05T14:36:43Z-1330008

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270512-sc-2012-01-05T14:38:59Z-1330083

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270506-sc-2012-01-05T14:38:47Z-1330077

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270468-sc-2012-01-05T14:37:43Z-1330039

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270456-sc-2012-01-05T14:37:19Z-1330027

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270483-sc-2012-01-05T14:38:09Z-1330054

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270523-sc-2012-01-05T14:39:19Z-1330094

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270453-sc-2012-01-05T14:37:14Z-1330024

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270503-sc-2012-01-05T14:38:41Z-1330074

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270465-sc-2012-01-05T14:37:36Z-1330036

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270438-sc-2012-01-05T14:36:45Z-1330009

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270522-sc-2012-01-05T14:39:17Z-1330093

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270469-sc-2012-01-05T14:37:44Z-1330040

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270495-sc-2012-01-05T14:38:27Z-1330066

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270484-sc-2012-01-05T14:38:11Z-1330055

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270440-sc-2012-01-05T14:36:49Z-1330011

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270514-sc-2012-01-05T14:39:02Z-1330085

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270504-sc-2012-01-05T14:38:43Z-1330075

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270485-sc-2012-01-05T14:38:12Z-1330056

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270470-sc-2012-01-05T14:37:46Z-1330041

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270439-sc-2012-01-05T14:36:47Z-1330010

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270454-sc-2012-01-05T14:37:15Z-1330025

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270496-sc-2012-01-05T14:38:29Z-1330067

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Caenorhabditis elegans

text: SC

text: public

text: 2019STDY5270464-sc-2012-01-05T14:37:34Z-1330035

text: Caenorhabditis elegans

text: Caenorhabditis elegans


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

unit: l kgVS-1 d-1

characteristic: Biogas volume

unit: ppm

characteristic: DMS

characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: Hydrogen sulphide concentration

text: UH/IB

text: public

characteristic: Organic load rate

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

unit: ml

characteristic: amount or size of sample collected

characteristic: carbon/nitrogen ration

text: 2008-9-9 and 2008-9-17

characteristic: collection date

text: note-2 independant sampling events combined prior to DNA extraction

characteristic: description

text: Biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: waste

characteristic: environment (material)

characteristic: ethanol concentration

text: Finland, Hameelinna

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not detected

unit: %. min-max

characteristic: methane

characteristic: number of reads

text: bioreactor metagenome

text: Ar344f (forward):ACGGGGCGCAGCAGGCGCGA; 518 (reverse):ATTACCGCGGCGGCTG; CREN512 (reverse):CGGCGGCTGACACCAG

characteristic: pcr primer

characteristic: ph

text: bioreactor metagenome

text: 16S rRNA

characteristic: target gene

unit: ˚C

characteristic: temperature

type: has member


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

text: not detected

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: not detected

characteristic: Hydrogen sulphide concentration

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Organic load rate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

text: Biome

text: anaerobic bioreactor

text: waste

text: Finland, Hameelinna

text: 51.7 - 68.0

text: bioreactor metagenome

characteristic: organism

text: 5.8af (forward):GTGAATCATCGAGTTCTTGAAC; 5.8bf (forward):GTGAATCATCAAATCTTTGAAC; 5.8cf (forward):GTGAATCATCGAGTCTTTGAAC; 5.8df (forward):GTGAATCATCAGTTTTTGAAC; 5.8ef (forward):GCGAATCATCGAATTCTCGAAC; ITS4 (reverse):TCCTCCGCTTATTGATATGC

text: bioreactor metagenome


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

text: UH/IB

text: public

characteristic: amount or size of sample collected

characteristic: carbon/nitrogen ration

characteristic: collection date

text: Biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: waste

characteristic: environment (material)

characteristic: ethanol concentration

text: Finland, Hameelinna

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 46.0 - 70.9

characteristic: methane

characteristic: number of reads

text: bioreactor metagenome

characteristic: pcr primer

characteristic: ph

text: bioreactor metagenome

characteristic: target gene

characteristic: temperature


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

text: not detected

characteristic: DMS

characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: not detected

characteristic: Hydrogen sulphide concentration

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Organic load rate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

text: Biome

text: anaerobic bioreactor

text: waste

text: Finland, Hameelinna

text: 51.7 - 68.0

text: bioreactor metagenome

characteristic: organism

text: 341f(forward):CCTACGGGAGGCAGCAG; D'(reverse):GTATTACCGCGGCTGCTG

text: bioreactor metagenome

text: 16S rRNA


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

text: UH/IB

text: public

characteristic: amount or size of sample collected

characteristic: carbon/nitrogen ration

text: 2008-9-9 and 2008-9-17

characteristic: collection date

characteristic: description

text: Biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: waste

characteristic: environment (material)

characteristic: ethanol concentration

text: Finland, Hameelinna

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not detected

characteristic: methane

characteristic: number of reads

text: bioreactor metagenome

characteristic: pcr primer

characteristic: ph

text: bioreactor metagenome

characteristic: target gene

characteristic: temperature


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Hydrogen sulphide concentration

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Organic load rate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

text: Biome

text: anaerobic bioreactor

text: waste

text: Finland, Hameelinna

text: 52.3 - 66.0

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: 16S rRNA


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

text: not detected

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

text: not detected

text: UH/IB

text: public

characteristic: amount or size of sample collected

characteristic: carbon/nitrogen ration

characteristic: collection date

text: Biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: waste

characteristic: environment (material)

characteristic: ethanol concentration

text: Finland, Hameelinna

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 51.7 - 68.0

characteristic: methane

characteristic: number of reads

text: bioreactor metagenome

characteristic: pcr primer

characteristic: ph

text: bioreactor metagenome

text: 16S rRNA

characteristic: target gene

characteristic: temperature


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Hydrogen sulphide concentration

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Organic load rate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

text: Biome

text: anaerobic bioreactor

text: waste

text: Finland, Hameelinna

text: 52.3 - 66.0

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: 16S rRNA


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

text: UH/IB

text: public

characteristic: amount or size of sample collected

characteristic: carbon/nitrogen ration

text: 2008-9-9 and 2008-9-17

characteristic: collection date

characteristic: description

text: Biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: waste

characteristic: environment (material)

characteristic: ethanol concentration

text: Finland, Hameelinna

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not detected

characteristic: methane

characteristic: number of reads

text: bioreactor metagenome

characteristic: pcr primer

characteristic: ph

text: bioreactor metagenome

text: 16S rRNA

characteristic: target gene

characteristic: temperature


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Hydrogen sulphide concentration

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Organic load rate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

text: Biome

text: anaerobic bioreactor

text: waste

text: Finland, Hameelinna

text: 46.0 - 70.9

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: 16S rRNA


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMARKS

text: UH/IB

text: public

characteristic: amount or size of sample collected

characteristic: carbon/nitrogen ration

characteristic: collection date

text: Biome

characteristic: environment (biome)

text: anaerobic bioreactor

characteristic: environment (feature)

text: waste

characteristic: environment (material)

characteristic: ethanol concentration

text: Finland, Hameelinna

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 52.3 - 66.0

characteristic: methane

characteristic: number of reads

text: bioreactor metagenome

characteristic: pcr primer

characteristic: ph

text: bioreactor metagenome

characteristic: target gene

characteristic: temperature


characteristic: Alkalinity/VFA

characteristic: Ammonium nitrate concentration

characteristic: Biogas volume

characteristic: DMS

characteristic: ENA-CHECKLIST

text: GSC, MIxS, MIMARKS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: Hydrogen sulphide concentration

text: UH/IB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Organic load rate

characteristic: SRA accession

characteristic: Submitter Id

characteristic: Total solids (TS)

characteristic: VS reduction (%)

characteristic: Volatile solids (VS)

characteristic: ammonium concentration

text: Biome

text: anaerobic bioreactor

text: waste

text: Finland, Hameelinna

text: 46.0 - 70.9

text: bioreactor metagenome

characteristic: organism

text: bioreactor metagenome

text: 16S rRNA


text: Th1 cells

characteristic: ArrayExpress-CellType

text: Anti H3K4me3 Millipore 07-473

characteristic: ArrayExpress-Immunoprecipitate

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: m_Th1_H3K4me3_P-sc-2011-11-15T14:50:51Z-43051

text: house mouse

characteristic: common name

text: Mus musculus

text: DNA isolated from ChIP

characteristic: sample description

text: Mus musculus


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: B cells (CD19+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: m_Bcell_H3K4me3_P-sc-2011-11-15T14:50:53Z-43053

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Th1 cells

text: Anti H3K27me3 Millipore 07-449 (lot 1662421)

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: m_Th1_H3K27me3_P-sc-2011-11-15T14:55:38Z-987449

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Dendritic cells (Cd11c+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_DC_H3K4me3_P-sc-2011-11-15T14:50:56Z-43056

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Dendritic cells (Cd11c+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_DC_H3K4me3_P-sc-2011-11-15T14:55:35Z-43055

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Dendritic cells (Cd11c+ sorted)

text: Mus musculus

text: SC

text: public

text: m_DC_H3K27me3_P-sc-2011-11-15T14:51:03Z-987450

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Th1 cells

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_Th1_H3K4me3_P-sc-2011-11-15T14:55:34Z-43052

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: B cells (CD19+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_Bcell_H3K4me3_P-sc-2011-11-15T14:50:54Z-43054

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Helmholtz Centre for Infection Research

text: public

tag: Namespace:Helmholtz Centre for Infection Research

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: fruit fly

text: Protocols: D. melanogaster cell lines were maintained under standard conditions. ChIPs were performed as described in the Upstate Biotechnology ChIP assay protocol. 100*10^6 Kc cells were fixed in 1% formaldehyde for 10 min at RT. Fixation was stopped by the addition of 240 mM glycine. Cells were harvested, washed in ice cold PBS, resuspended in 1 ml SDS-Lysis buffer (50 mM Tris-HCl, pH 8.0, 10 mM EDTA, 1% SDS, protease inhibitors) and incubated for 10 min on ice. Lysates were sonicated using a Bioruptor (Diagenode) to obtain an average fragment length of 0.5 kb and centrifuged (at 4 degrees C, 15 min, 13000 rpm). Shearing of the DNA was analyzed by agarose gel electrophoresis following reversal of crosslinks. The supernatant (chromatin) was subjected to ChIP analysis. 8 microliter of anti-dLint-1 #1 were used per ChIP. 140 microliter of chromatin were used per ChIP, diluted 10x with IP-buffer (16.7 mM Tris-HCl, pH 8.0, 16.7 mM NaCl, 1.2 mM EDTA, 0.01% SDS, 1.1% Triton X-100, protease inhibitors) and pre-cleared with 40 microliter of pre-blocked ProtG beads (1mg/ml BSA, 4 h) (GE Healthcare) for 30 min with rotation. Incubation with antibodies was performed overnight, prior to incubation for 2 h with 35 microliter of 1:1 ProtG slurry at 4 degrees C. Precipitates were serially washed for 10 min, three times with low salt wash buffer (20 mM Tris-HCl pH 8.0, 150 mM NaCl, 2 mM EDTA, 0.1% SDS, 1% Triton-X-100), three times with high salt wash buffer (20 mM Tris-HCl pH 8.0, 500 mM NaCl, 2 mM EDTA, 0.1% SDS, 1% Triton-X-100), once with LiCl wash buffer (10 mM Tris pH 8.0, 250 mM LiCl, 1 mM EDTA, 1% NP-40, 1% sodium deoxycholate), once with TE buffer. Immunoprecipitates were eluted twice with 250 microliter elution buffer (1% SDS, 0.1 M NaHCO3) for each 15 min at RT and crosslinks were reversed by addition of 20 microliter 5 M NaCl and heating at 65 degrees C overnight. Following addition of 10 microliter of 0.5 M EDTA, 20 microliter 1 M Tris-HCl, pH 6.5 and 2 microliter of 10 mg/ml Proteinase K samples were incubated for 1 h at 45 degrees C. DNA was purified with peqGOLD Cycle-Pure Kit (Peqlab) Generation of Lint-1 specific antibodies The C-terminus (aa 302-602) of dLint-1 was fused to GST by cloning into pGex4T1 vector. The recombinant protein was expressed in E. coli BL21 according to standard procedures. The GST-Lint-1-C-term fusion protein was purified via affinity chromatography using a GSTrap FF column (GE Healthcare) and subsequent ion exchange chromatography using a HiTrap SP HP column (GE Healthcare) on an Akta purifier system (GE Healthcare) according to the manufacturer's instructions. For immunization two rabbits (serum #1 and #2) were injected with 0.5 mg of purified GST-Lint-1-C-term fusion protein each (Peptide Speciality Laboratories, Heidelberg, Germany). The specificity of antibodies was verified by RNA interference in Kc cells and subsequent Western blot analysis of nuclear extracts.

characteristic: description

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

characteristic: title


text: Helmholtz Centre for Infection Research

text: public

text: ArrayExpress

text: KC

text: fruit fly

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Drosophila melanogaster


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ASASM277-sc-2012-10-24T15:37:35Z-1303973

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: Staphylococcus aureus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ASASM227-sc-2012-10-24T15:36:40Z-1303928

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: External Id

text: SC

text: public

text: ASASM326-sc-2012-10-24T15:38:24Z-1304013

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

text: ASASM290-sc-2012-10-24T15:37:49Z-1303984

characteristic: anonymized name

characteristic: collection date

text: UK

characteristic: country

text: not known

characteristic: host status

text: not known

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: specific host


text: Staphylococcus aureus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ASASM230-sc-2012-10-24T15:36:44Z-1303931

characteristic: Submitter Id

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ASASM276-sc-2012-10-24T15:37:34Z-1303972

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM228-sc-2012-10-24T15:36:41Z-1303929

text: UK

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: title


text: Staphylococcus aureus

text: SC

text: public

text: ASASM282-sc-2012-10-24T15:37:39Z-1303976

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM313-sc-2012-10-24T15:38:11Z-1304002

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM260-sc-2012-10-24T15:37:18Z-1303959

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM328-sc-2012-10-24T15:38:27Z-1304015

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM292-sc-2012-10-24T15:37:52Z-1303986

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM324-sc-2012-10-24T15:38:22Z-1304011

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM241-sc-2012-10-24T15:36:57Z-1303942

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM242-sc-2012-10-24T15:36:58Z-1303943

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM317-sc-2012-10-24T15:38:15Z-1304006

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: ASASM293-sc-2012-10-24T15:37:53Z-1303987

characteristic: anonymized name

characteristic: collection date

text: UK

characteristic: country

text: not known

characteristic: host status

text: not known

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human


text: Staphylococcus aureus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ASASM281-sc-2012-10-24T15:37:38Z-1303975

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: ASASM245-sc-2012-10-24T15:37:01Z-1303945

characteristic: Submitter Id

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ASASM280-sc-2012-10-24T15:37:37Z-1303974

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM248-sc-2012-10-24T15:37:05Z-1303948

text: UK

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: specific host

characteristic: title


text: Staphylococcus aureus

text: SC

text: public

text: ASASM243-sc-2012-10-24T15:37:00Z-1303944

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: ASASM325-sc-2012-10-24T15:38:23Z-1304012

characteristic: anonymized name

characteristic: collection date

text: UK

characteristic: country

text: not known

characteristic: host status

text: not known

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ASASM309-sc-2012-10-24T15:38:07Z-1303999

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: ASASM247-sc-2012-10-24T15:37:03Z-1303947

characteristic: Submitter Id

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM327-sc-2012-10-24T15:38:26Z-1304014

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: Staphylococcus aureus

text: SC

text: public

text: ASASM294-sc-2012-10-24T15:37:54Z-1303988

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM330-sc-2012-10-24T15:38:30Z-1304017

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM286-sc-2012-10-24T15:37:44Z-1303980

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM283-sc-2012-10-24T15:37:40Z-1303977

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM259-sc-2012-10-24T15:37:16Z-1303958

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM266-sc-2012-10-24T15:37:22Z-1303962

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: SC

text: public

text: ASASM285-sc-2012-10-24T15:37:43Z-1303979

characteristic: anonymized name

characteristic: collection date

text: UK

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: specific host

characteristic: title


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ASASM334-sc-2012-10-24T15:38:35Z-1304021

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ASASM287-sc-2012-10-24T15:37:45Z-1303981

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

text: ASASM329-sc-2012-10-24T15:38:29Z-1304016

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

text: ASASM268-sc-2012-10-24T15:37:24Z-1303964

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

text: ASASM267-sc-2012-10-24T15:37:23Z-1303963

characteristic: Submitter Id

text: UK

characteristic: country

text: not known

characteristic: host status

text: not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: human


text: Staphylococcus aureus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM284-sc-2012-10-24T15:37:42Z-1303978

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: Staphylococcus aureus

text: SC

text: public

text: ASASM254-sc-2012-10-24T15:37:10Z-1303953

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM331-sc-2012-10-24T15:38:32Z-1304018

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: SC

text: public

text: ASASM261-sc-2012-10-24T15:37:19Z-1303960

characteristic: anonymized name

characteristic: collection date

text: UK

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: specific host

characteristic: title


characteristic: ENA last update

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ASASM262-sc-2012-10-24T15:37:21Z-1303961

text: United Kingdom: England

text: disease

text: blood

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ASASM304-sc-2012-10-24T15:38:04Z-1303996

characteristic: Submitter Id

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM240-sc-2012-10-24T15:36:56Z-1303941

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM271-sc-2012-10-24T15:37:28Z-1303967

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


text: Staphylococcus aureus

text: SC

text: public

text: ASASM238-sc-2012-10-24T15:36:54Z-1303939

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM253-sc-2012-10-24T15:37:09Z-1303952

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM250-sc-2012-10-24T15:37:07Z-1303950

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM307-sc-2012-10-24T15:38:06Z-1303998

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM289-sc-2012-10-24T15:37:48Z-1303983

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM251-sc-2012-10-24T15:37:08Z-1303951

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: SC

text: public

text: ASASM315-sc-2012-10-24T15:38:13Z-1304004

characteristic: anonymized name

characteristic: collection date

text: UK

characteristic: country

text: not known

characteristic: host status

text: not known

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human


text: Staphylococcus aureus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ASASM335-sc-2012-10-24T15:38:37Z-1304022

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ASASM257-sc-2012-10-24T15:37:13Z-1303956

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ASASM298-sc-2012-10-24T15:37:58Z-1303991

characteristic: Submitter Id

text: UK

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: specific host

characteristic: title


text: Staphylococcus aureus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM272-sc-2012-10-24T15:37:30Z-1303968

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

characteristic: strain


text: Staphylococcus aureus

text: SC

text: public

text: ASASM303-sc-2012-10-24T15:38:02Z-1303995

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM316-sc-2012-10-24T15:38:14Z-1304005

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM258-sc-2012-10-24T15:37:15Z-1303957

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM234-sc-2012-10-24T15:36:49Z-1303935

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM255-sc-2012-10-24T15:37:11Z-1303954

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM269-sc-2012-10-24T15:37:26Z-1303965

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM288-sc-2012-10-24T15:37:47Z-1303982

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM299-sc-2012-10-24T15:37:59Z-1303992

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM333-sc-2012-10-24T15:38:34Z-1304020

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM233-sc-2012-10-24T15:36:48Z-1303934

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM319-sc-2012-10-24T15:38:18Z-1304008

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM332-sc-2012-10-24T15:38:33Z-1304019

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM291-sc-2012-10-24T15:37:51Z-1303985

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM237-sc-2012-10-24T15:36:53Z-1303938

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM318-sc-2012-10-24T15:38:17Z-1304007

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM270-sc-2012-10-24T15:37:27Z-1303966

text: Staphylococcus aureus

text: Staphylococcus aureus


characteristic: ENA-CHECKLIST

text: SC

text: public

text: ASASM300-sc-2012-10-24T15:38:00Z-1303993

characteristic: anonymized name

characteristic: collection date

text: UK

characteristic: country

text: not known

characteristic: host status

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ASASM256-sc-2012-10-24T15:37:12Z-1303955

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ASASM229-sc-2012-10-24T15:36:42Z-1303930

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: External Id

text: SC

text: public

text: ASASM239-sc-2012-10-24T15:36:55Z-1303940

characteristic: Submitter Id

text: Staphylococcus aureus

text: Staphylococcus aureus


text: SC

characteristic: INSDC center name

text: public

text: ASASM273-sc-2012-10-24T15:37:30Z-1303969

text: UK

text: not known

text: not known

characteristic: isolation source

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: human

characteristic: specific host

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

text: ASASM314-sc-2012-10-24T15:38:12Z-1304003

characteristic: anonymized name

characteristic: collection date

text: UK

characteristic: country

text: not known

text: not known

text: Staphylococcus aureus

text: Staphylococcus aureus

text: human

characteristic: strain


text: Staphylococcus aureus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ASASM297-sc-2012-10-24T15:37:57Z-1303990

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ASASM236-sc-2012-10-24T15:36:51Z-1303937

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: ASASM301-sc-2012-10-24T15:38:01Z-1303994

characteristic: Submitter Id

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Staphylococcus aureus

text: SC

text: public

text: ASASM274-sc-2012-10-24T15:37:32Z-1303970

text: Staphylococcus aureus

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text: Protocols: Briefly, 14-15 day old mice were injected with DEN (20 mg/kg body weight) (Sigma) to initiate tumor growth. Beginning at 28 days, mice were injected with TCPOBOP (3 mg/kg bodyweight) (Sigma) once every two weeks for a total of eight times to promote tumor growth.DEN-induced liver injury experiments were carried out as described previously (Naugler etal., 2007), except that 50 mg/kg body weight Faslodex or estrogen were intraperitoneally injected daily for seven days before DEN treatment. The human samples were not treated. Chromatin was extracted from mouse livers following the protocol described in Li et al. NSMB 2011 [PMID 21623366]. ChIP was performed on the liver chromatin samples. ChIP-DNA was prepared for sequencing with the Illumina GAII sequencer at the Functional Genomics Center at the Institute for Diabetes, Obesity and Metabolismat the University of Pennsylvania.

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text: public

characteristic: SRA accession

text: PAP_CF_016a-sc-2011-11-30T12:51:21Z-1313217

characteristic: Submitter Id

text: Mycobacterium abscessus

characteristic: organism

text: Mycobacterium abscessus


text: Mycobacterium abscessus

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: PAP_CF_029a-sc-2011-11-30T12:51:43Z-1313247

text: Mycobacterium abscessus

text: Mycobacterium abscessus


text: Mycobacterium abscessus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: PAP_CF_031aa-sc-2011-11-30T12:52:41Z-1313301

characteristic: collection date

characteristic: collection month

text: United Kingdom: Papworth

characteristic: geographic location (country and/or sea)

text: disease

characteristic: host health state

characteristic: isolate

text: sputum

text: Mycobacterium abscessus

text: Papworth Everard

text: Mycobacterium abscessus

text: Mycobacterium abscessus

text: human

text: Mycobacterium abscessus; Mycobacterium abscessus; Mycobacterium abscessus

characteristic: title


text: Mycobacterium abscessus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

text: public

text: PAP_CF_007c-sc-2011-11-30T12:52:04Z-1313267

text: United Kingdom: Papworth

text: disease

text: sputum

characteristic: isolation source

text: Mycobacterium abscessus

characteristic: pmid

text: Papworth Everard

characteristic: region

text: Mycobacterium abscessus

characteristic: scientific name

text: Mycobacterium abscessus

text: human

characteristic: specific host

characteristic: strain

characteristic: tax id