E-MTAB-3926:Sample 55

text: public

text: E-MTAB-3926:Sample 55

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 55


E-MTAB-3926:Sample 56

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3926:Sample 56

tag: Namespace:Department of Plant Sciences University of Cambridge

text: ArrayExpress

text: thale cress

characteristic: common name

text: Protocols: Plants were grown at 20°C, 60% humidity with a long day photoperiod (16 hours light) and light intensity of 150 μmols. We applied a method to identify crossovers from low coverage (~0.5-2×) sequencing, using 96 barcoded genomic DNA libraries generated from recombinant individuals (Rowan et al. 2015), with the following modifications. DNA was digested with 0.3 units of dsDNA Shearase (Zymo Research) in a final volume of 15 l. The resulting DNA fragments were end-repaired with 3 units of T4 DNA polymerase (New England Biolabs), 10 units of T4 polynucleotide kinase (Thermo Fisher Scientific) and 1.25 units of Klenow Fragment (New England Biolabs), in the presence of 0.4 mM dNTPs in a reaction volume of 30 l for 30 min at 20 oC. DNA fragments were cleaned as described (Rowan et al. 2015), and the protocol followed until the DNA fragment size selection step. To size-select, following barcoded Illumina adaptor ligation, 30 l of a mixture of eight concentrated DNA libraries were combined in a tube containing 48 l of a 1:1 mix of AMPure XP magnetic SPRI beads (Beckman-Coulter. Hereafter, SPRI beads) in water. After 5 minutes incubation at room temperature, the samples were placed on a magnetic rack and allowed to clear before supernatant was transferred to a fresh tube and mixed with 0.12 volumes of undiluted SPRI beads. After 5 minutes incubation at room temperature, the tubes were placed on a magnetic rack and allowed to clear. The supernatants were discarded and the beads washed twice with 80% ethanol. DNA was eluted in 20 l of 10 mM Tris, pH 8.0. 12 l of the eluate was used for PCR amplification in a reaction volume of 50 l using KAPA HiFi HotStart ReadyMIx PCR Kit (Kapabiosystems) and the reported DNA oligonucleotides (Rowan et al. 2015). 12 cycles of amplification were performed and PCR products were then purified on SPRI beads (1× ratio) and quantified with a Bioanalyzer.

characteristic: description

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 56

characteristic: title

type: has member


E-MTAB-3926:Sample 57

text: Department of Plant Sciences University of Cambridge

text: public

text: E-MTAB-3926:Sample 57

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 57


E-MTAB-3926:Sample 58

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 58

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 58


E-MTAB-3926:Sample 59

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 59

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 59


E-MTAB-3926:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 6

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 6


E-MTAB-3926:Sample 60

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 60

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 60


E-MTAB-3926:Sample 61

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 61

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 61


E-MTAB-3926:Sample 62

text: public

text: E-MTAB-3926:Sample 62

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 62


E-MTAB-3926:Sample 63

text: public

text: E-MTAB-3926:Sample 63

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 63


E-MTAB-3926:Sample 64

text: public

text: E-MTAB-3926:Sample 64

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 64

characteristic: title


E-MTAB-3926:Sample 65

text: public

text: E-MTAB-3926:Sample 65

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 65


E-MTAB-3926:Sample 66

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 66

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 66


E-MTAB-3926:Sample 67

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 67

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 67


E-MTAB-3926:Sample 68

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 68

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 68


E-MTAB-3926:Sample 69

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 69

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 69


E-MTAB-3926:Sample 7

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 7

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 7


E-MTAB-3926:Sample 70

text: public

text: E-MTAB-3926:Sample 70

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 70


E-MTAB-3926:Sample 71

text: public

text: E-MTAB-3926:Sample 71

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 71


E-MTAB-3926:Sample 72

text: public

text: E-MTAB-3926:Sample 72

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 72

characteristic: title


E-MTAB-3926:Sample 73

text: public

text: E-MTAB-3926:Sample 73

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 73


E-MTAB-3926:Sample 74

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 74

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 74


E-MTAB-3926:Sample 75

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 75

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 75


E-MTAB-3926:Sample 76

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 76

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 76


E-MTAB-3926:Sample 77

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 77

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 77


E-MTAB-3926:Sample 78

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 78

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 78


E-MTAB-3926:Sample 79

text: public

text: E-MTAB-3926:Sample 79

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 79


E-MTAB-3926:Sample 8

text: public

text: E-MTAB-3926:Sample 8

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-3926:Sample 80

text: public

text: E-MTAB-3926:Sample 80

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 80

characteristic: title


E-MTAB-3926:Sample 81

text: public

text: E-MTAB-3926:Sample 81

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 81


E-MTAB-3926:Sample 82

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 82

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 82


E-MTAB-3926:Sample 83

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 83

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 83


E-MTAB-3926:Sample 84

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 84

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 84


E-MTAB-3926:Sample 85

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 85

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 85


E-MTAB-3926:Sample 86

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 86

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 86


E-MTAB-3926:Sample 87

text: public

text: E-MTAB-3926:Sample 87

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 87


E-MTAB-3926:Sample 88

text: public

text: E-MTAB-3926:Sample 88

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 88


E-MTAB-3926:Sample 89

text: public

text: E-MTAB-3926:Sample 89

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 89

characteristic: title


E-MTAB-3926:Sample 9

text: public

text: E-MTAB-3926:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 9


E-MTAB-3926:Sample 90

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 90

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 90


E-MTAB-3926:Sample 91

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3926:Sample 91

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 91


E-MTAB-3926:Sample 92

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3926:Sample 92

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 92


E-MTAB-3926:Sample 93

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3926:Sample 93

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 93


E-MTAB-3926:Sample 94

text: public

characteristic: SRA accession

text: E-MTAB-3926:Sample 94

text: ArrayExpress

text: thale cress

characteristic: common name

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 94


E-MTAB-3926:Sample 95

text: public

text: E-MTAB-3926:Sample 95

text: ArrayExpress

text: thale cress

characteristic: description

text: 3-5 weeks

characteristic: developmental stage

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 95


E-MTAB-3926:Sample 96

text: public

text: E-MTAB-3926:Sample 96

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

characteristic: genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 96


E-MTAB-3926:Sample 97

text: public

text: E-MTAB-3926:Sample 97

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

characteristic: organism part

text: Arabidopsis thaliana

text: Sample 97

characteristic: title


E-MTAB-3926:Sample 98

text: public

text: E-MTAB-3926:Sample 98

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 98


E-MTAB-3926:Sample 99

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3926:Sample 99

text: ArrayExpress

text: thale cress

text: 3-5 weeks

text: Col/Ler F1 backcrossed to Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: leaf

text: Arabidopsis thaliana

text: Sample 99


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vaiomer

text: public

text: house mouse

text: Liver tissue sample - rep1

text: Mus musculus

text: Mus musculus

text: Liver

characteristic: tissue

text: Liver tissue sample - rep1


text: Vaiomer

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Liver tissue sample - rep2

text: Mus musculus

text: Mus musculus

text: Liver

text: Liver tissue sample - rep2


text: Vaiomer

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

characteristic: common name

text: Liver tissue sample - rep3

text: Mus musculus

text: Mus musculus

text: Liver

text: Liver tissue sample - rep3


text: Vaiomer

text: public

text: house mouse

text: Mesenteric adipose tissue sample - rep1

characteristic: description

text: Mus musculus

text: Mus musculus

text: Adipose tissue

text: Mesenteric adipose tissue sample - rep1


text: Vaiomer

text: public

text: house mouse

text: Mesenteric adipose tissue sample - rep2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Adipose tissue

text: Mesenteric adipose tissue sample - rep2


text: Vaiomer

text: public

text: house mouse

text: Mesenteric adipose tissue sample - rep3

text: Mus musculus

text: Mus musculus

text: Adipose tissue

text: Mesenteric adipose tissue sample - rep3


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 7

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 old sequencing library on run 7

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 7

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 old sequencing library on run 7

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 7

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 old sequencing library on run 7

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 new sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 old sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 old sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 old sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 new sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 old sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 old sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 new sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 old sequencing library on run 6

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 new sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 old sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 old sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 old sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 new sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 old sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 old sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 new sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 old sequencing library on run 5

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 new sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 old sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 old sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 old sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 new sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 old sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 old sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 new sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 old sequencing library on run 4

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 new sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 old sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 old sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 old sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 new sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 old sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 old sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 new sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 old sequencing library on run 3

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 new sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 old sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 old sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 old sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 new sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 old sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 old sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 new sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 old sequencing library on run 2

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 3 new sequencing library on run 1

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 1 new sequencing library on run 1

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 2 new sequencing library on run 1

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 4 new sequencing library on run 1

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 5 new sequencing library on run 1

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Ileum indiv 6 new sequencing library on run 1

text: Mus musculus

text: Mus musculus

text: Ileum


text: Vaiomer

text: public

text: house mouse

text: Barin tissue sample - rep1

text: Mus musculus

text: Mus musculus

text: Brain

text: Barin tissue sample - rep1


text: Vaiomer

text: public

text: house mouse

text: Barin tissue sample - rep2

text: Mus musculus

text: Mus musculus

text: Brain

text: Barin tissue sample - rep2


text: Vaiomer

text: public

text: house mouse

text: Barin tissue sample - rep3

text: Mus musculus

text: Mus musculus

text: Brain

text: Barin tissue sample - rep3


text: Vaiomer

text: public

text: house mouse

text: Heart tissue sample - rep1

text: Mus musculus

text: Mus musculus

text: Heart

text: Heart tissue sample - rep1


text: Vaiomer

text: public

text: house mouse

text: Heart tissue sample - rep2

text: Mus musculus

text: Mus musculus

text: Heart

text: Heart tissue sample - rep2


text: Vaiomer

text: public

text: house mouse

text: Heart tissue sample - rep3

text: Mus musculus

text: Mus musculus

text: Heart

text: Heart tissue sample - rep3


text: Vaiomer

text: public

text: house mouse

text: Muscle tissue sample - rep1

text: Mus musculus

text: Mus musculus

text: Muscle

text: Muscle tissue sample - rep1


text: Vaiomer

text: public

text: house mouse

text: Muscle tissue sample - rep2

text: Mus musculus

text: Mus musculus

text: Muscle

text: Muscle tissue sample - rep2


text: Vaiomer

text: public

text: house mouse

text: Muscle tissue sample - rep3

text: Mus musculus

text: Mus musculus

text: Muscle

text: Muscle tissue sample - rep3


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep5

text: Mus musculus

text: Mus musculus


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep6

text: Mus musculus

text: Mus musculus


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep7

text: Mus musculus

text: Mus musculus


text: Vaiomer

text: public

text: house mouse

text: Feces sample 1 - rep1

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 1 - rep1


text: Vaiomer

text: public

text: house mouse

text: Feces sample 1 - rep2

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 1 - rep2


text: Vaiomer

text: public

text: house mouse

text: Feces sample 1 - rep3

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 1 - rep3


text: Vaiomer

text: public

text: house mouse

text: Feces sample 2 - rep1

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 2 - rep1


text: Vaiomer

text: public

text: house mouse

text: Feces sample 2 - rep2

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 2 - rep2


text: Vaiomer

text: public

text: house mouse

text: Feces sample 2 - rep3

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 2 - rep3


text: Vaiomer

text: public

text: house mouse

text: Feces sample 3 - rep1

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 3 - rep1


text: Vaiomer

text: public

text: house mouse

text: Feces sample 3 - rep2

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 3 - rep2


text: Vaiomer

text: public

text: house mouse

text: Feces sample 3 - rep3

text: Mus musculus

text: Mus musculus

text: Feces

text: Feces sample 3 - rep3


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 3 - rep1

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 3 - rep1


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 3 - rep2

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 3 - rep2


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 3 - rep3

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 3 - rep3


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 2 - rep1

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 2 - rep1


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 2 - rep2

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 2 - rep2


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 2 - rep3

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 2 - rep3


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 1 - rep1

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 1 - rep1


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 1 - rep2

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 1 - rep2


text: Vaiomer

text: public

text: house mouse

text: Ileum tissue sample 1 - rep3

text: Mus musculus

text: Mus musculus

text: Ileum

text: Ileum tissue sample 1 - rep3


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep1

text: Mus musculus

text: Mus musculus


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep2

text: Mus musculus

text: Mus musculus


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep3

text: Mus musculus

text: Mus musculus


text: Vaiomer

text: public

text: house mouse

text: Negative control with nuclase free water - rep4

text: Mus musculus

text: Mus musculus


text: Normal

characteristic: ArrayExpress-Phenotype

text: Mouse

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Haemonchus contortus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

characteristic: strain


text: Normal

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: sample description

text: Mus musculus


text: Tumour

text: Mus musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


CT.A.C

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.A.C

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.A, termite C

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.A.C

characteristic: title


CT.A.D

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.A.D

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.A, termite D

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.A.D


CT.A.E

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.A.E

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.A, termite E

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.A.E


CT.A.F

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: CT.A.F

text: eastern subterranean termite

text: Hindgut sample from Colony CT.A, termite F

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.A.F

characteristic: title


CT.A.G

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.A.G

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.A, termite G

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.A.G


CT.A.H

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.A.H

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.A, termite H

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.A.H


CT.A.I

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: CT.A.I

text: eastern subterranean termite

text: Hindgut sample from Colony CT.A, termite I

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.A.I

characteristic: title


CT.A.J

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.A.J

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.A, termite J

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.A.J


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.A, soldier 1

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina


CT.B.A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: CT.B.A

text: eastern subterranean termite

text: Hindgut sample from Colony CT.B, termite A

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.B.A

characteristic: title


CT.B.B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.B.B

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.B, termite B

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.B.B


CT.B.C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.B.C

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.B, termite C

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.B.C


CT.B.D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: CT.B.D

text: eastern subterranean termite

text: Hindgut sample from Colony CT.B, termite D

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.B.D

characteristic: title


CT.B.E

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.B.E

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.B, termite E

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.B.E


CT.C.A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.C.A

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.C, termite A

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.C.A


CT.C.B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: CT.C.B

text: eastern subterranean termite

text: Hindgut sample from Colony CT.C, termite B

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.C.B

characteristic: title


CT.C.C

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.C.C

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.C, termite C

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.C.C


CT.C.D

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.C.D

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.C, termite D

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.C.D


CT.C.E

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: CT.C.E

text: eastern subterranean termite

text: Hindgut sample from Colony CT.C, termite E

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.C.E

characteristic: title


CT.C.F

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.C.F

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.C, termite F

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.C.F


CT.C.G

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.C.G

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.C, termite G

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.C.G


CT.C.H

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: CT.C.H

text: eastern subterranean termite

text: Hindgut sample from Colony CT.C, termite H

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.C.H

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.C, soldier 1

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina


CT.D.A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.D.A

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.D, termite A

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.D.A


CT.D.B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: CT.D.B

text: eastern subterranean termite

text: Hindgut sample from Colony CT.D, termite B

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: CT.D.B

characteristic: title


CT.D.C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CT.D.C

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony CT.D, termite C

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.D.C


CT.D.D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CT.D.D

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony CT.D, termite D

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: CT.D.D


MA.A.A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: MA.A.A

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, termite A

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.A.A

characteristic: title


MA.A.B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.A.B

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.A, termite B

characteristic: description

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.B


MA.A.C

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MA.A.C

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, termite C

text: deciduous/coniferous forest

characteristic: environment (biome)

text: CT Valley Biological Supply Co

characteristic: environment (feature)

text: mulch (in lab)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.C


MA.A.D

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: MA.A.D

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, termite D

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.A.D

characteristic: title


MA.A.E

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.A.E

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.A, termite E

characteristic: description

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.E


MA.A.G

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MA.A.G

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, termite G

text: deciduous/coniferous forest

characteristic: environment (biome)

text: CT Valley Biological Supply Co

characteristic: environment (feature)

text: mulch (in lab)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.G


MA.A.H

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: MA.A.H

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, termite H

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.A.H

characteristic: title


MA.A.I

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.A.I

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.A, termite I

characteristic: description

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.I


MA.A.J

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MA.A.J

characteristic: collection date

text: eastern subterranean termite

text: deciduous/coniferous forest

characteristic: environment (biome)

text: CT Valley Biological Supply Co

characteristic: environment (feature)

text: mulch (in lab)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.J


MA.A.K

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: MA.A.K

text: eastern subterranean termite

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.A.K

characteristic: title


MA.A.L

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.A.L

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

characteristic: description

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.L


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, worker 1 (Alate Study)

text: deciduous/coniferous forest

characteristic: environment (biome)

text: CT Valley Biological Supply Co

characteristic: environment (feature)

text: mulch (in lab)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, worker 2(Alate Study)

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

characteristic: title


MA.A.AL.A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.A.AL.A

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.A, alate 1 (Alate Study)

characteristic: description

text: deciduous/coniferous forest

text: CT Valley Biological Supply Co

text: mulch (in lab)

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.AL.A


MA.A.AL.B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MA.A.AL.B

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.A, alate 2 (Alate Study)

text: deciduous/coniferous forest

characteristic: environment (biome)

text: CT Valley Biological Supply Co

characteristic: environment (feature)

text: mulch (in lab)

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.A.AL.B


MA.B.A

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: MA.B.A

text: eastern subterranean termite

text: Hindgut sample from Colony MA.B, termite A

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.B.A

characteristic: title


MA.B.B

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.B.B

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.B, termite B

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.B.B


MA.B.C

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MA.B.C

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.B, termite C

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.B.C


MA.B.D

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: MA.B.D

text: eastern subterranean termite

text: Hindgut sample from Colony MA.B, termite D

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.B.D

characteristic: title


MA.B.E

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.B.E

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.B, termite E

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.B.E


MA.B.F

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: MA.B.F

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.B, termite F

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.B.F


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

text: public

text: eastern subterranean termite

text: Hindgut sample from Colony MA.B, soldier 1

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.B, soldier 2

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: eastern subterranean termite

text: Hindgut sample from Colony MA.B, soldier 3

text: deciduous/coniferous forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina


MA.C.A

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCONNMISEQ

text: public

text: MA.C.A

text: eastern subterranean termite

text: Hindgut sample from Colony MA.C, termite A

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Reticulitermes flavipes

text: Termite 16S

characteristic: project name

text: Reticulitermes flavipes

text: Illumina

characteristic: sequencing method

text: MA.C.A

characteristic: title


MA.C.B

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCONNMISEQ

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MA.C.B

characteristic: Submitter Id

text: eastern subterranean termite

characteristic: common name

text: Hindgut sample from Colony MA.C, termite B

characteristic: description

text: deciduous/coniferous forest

text: forest

text: soil

text: USA

text: host-associated

text: mimarks-survey

text: Reticulitermes flavipes

characteristic: organism

text: Termite 16S

text: Reticulitermes flavipes

text: Illumina

text: MA.C.B


E-MTAB-3932:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3932:Sample 1

tag: Namespace:Tokyo Metropolitan Institute of Medical Science

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: WT (non-[KIL-d]) M0 or [KIL-d] M0 haploid cells were crossed with WT K+R+ haploid cells. The resulting diploid was cultured for two days and plated on YPAD plate at pH4.7. The diploid cells are defined as âG1â yeast, which exclusively harbor K+R+ virus and exhibit K+ phenotypes (Figures 4A and 4B). The G1 yeast was successively passaged on YPAD plates at pH4.7 and killer phenotypes of the resulting yeast cells in a distinct number of passage (generation) were examined by the killer assay. The yeast cells were passaged until K- phenotypes were clearly observed. Viral RNA and mRNA were extracted from distinct generations of yeast and following RT-PCR was performed as described above. The cDNA was preamplified by PCR with PrimeSTAR Max (Takara) using the primers which contain a tag sequence (Illumina) for identification of each sample in the multiplexed samples and an adaptor sequence for deep sequence analysis. Primers used in this study were listed in Table S6. Deep sequence analysis of the libraries was performed on Illumina HiSeq2000 in Hokkaido System Science CO., Ltd or Illumina HiSeq2500 in RIKEN BSI Research Resources Center (RRC). The total number of sequence reads in each sample was approximately 5,000,000. All data were processed and analyzed using CLC Genomics Workbench (CLC bio, Katrinebjerg, Denmark). Sequence data were referred to the K1, L-A, 20S RNA viral genome sequences or the S. cerevisiae TUB1 sequence. In the analysis of sequence data, each nucleotide data whose quality value was less than 40 (error probability =0.0001) was eliminated in order to increase the reliability of the sequence data. For calculation of the rate of accumulation of new mutations in the M1 viral genome of WT and [KIL-d] yeast, the sequence data at the nucleotide position 229 in the killer toxin gene were removed. The rate of de novo mutations in M1 virus, 20S virus and yeast TUB1 genes in Figures 4 and S11 was determined by the deep sequence data from independent colonies of distinct generations (G1-G12) of yeast. Viral RNA and mRNA in yeast were isolated by phenol extraction of whole yeast cells as described previously (Schmitt et al., 1990). Briefly, AE buffer (50mM Sodium acetate, 10mM EDTA) and glass beads were added to yeast cell pellets and yeast cells were broken by multi vortex. RNA was extracted by phenol extraction using phenol saturated with citrate buffer, pH4.3 and chloroform. The extracted RNA was concentrated by propanol precipitation. The cDNA was preamplified by PCR with PrimeSTAR Max (Takara) using the primers which contain a tag sequence (Illumina) for identification of each sample in the multiplexed samples and an adaptor sequence for deep sequence analysis.

text: M0 [KIL-d]/wild type K+R+

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

characteristic: phenotype

text: Saccharomyces cerevisiae

text: Sample 1


E-MTAB-3932:Sample 10

text: Tokyo Metropolitan Institute of Medical Science

text: public

text: E-MTAB-3932:Sample 10

text: ArrayExpress

text: baker's yeast

text: M0/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 10

characteristic: title


E-MTAB-3932:Sample 11

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3932:Sample 11

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 11


E-MTAB-3932:Sample 12

characteristic: External Id

text: public

text: E-MTAB-3932:Sample 12

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 12


E-MTAB-3932:Sample 13

characteristic: INSDC last update

text: public

text: E-MTAB-3932:Sample 13

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 13


E-MTAB-3932:Sample 14

text: public

characteristic: INSDC status

text: E-MTAB-3932:Sample 14

text: ArrayExpress

text: baker's yeast

text: M0 /wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 14


E-MTAB-3932:Sample 15

text: public

characteristic: SRA accession

text: E-MTAB-3932:Sample 15

text: ArrayExpress

text: baker's yeast

text: M0 /wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 15


E-MTAB-3932:Sample 16

text: public

text: E-MTAB-3932:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 16


E-MTAB-3932:Sample 17

text: public

text: E-MTAB-3932:Sample 17

text: ArrayExpress

text: baker's yeast

characteristic: common name

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 17


E-MTAB-3932:Sample 2

text: public

text: E-MTAB-3932:Sample 2

text: ArrayExpress

text: baker's yeast

characteristic: description

text: M0 /wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 2


E-MTAB-3932:Sample 3

text: public

text: E-MTAB-3932:Sample 3

text: ArrayExpress

text: baker's yeast

text: M0 /wild type K+R+

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 3


E-MTAB-3932:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3932:Sample 4

text: ArrayExpress

text: baker's yeast

text: M0 /wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 4


E-MTAB-3932:Sample 5

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3932:Sample 5

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 5


E-MTAB-3932:Sample 6

characteristic: INSDC center name

text: public

text: E-MTAB-3932:Sample 6

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 6


E-MTAB-3932:Sample 7

characteristic: INSDC first public

text: public

text: E-MTAB-3932:Sample 7

text: ArrayExpress

text: baker's yeast

text: M0 [KIL-d]/wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K+R+ virus

text: Saccharomyces cerevisiae

text: Sample 7


E-MTAB-3932:Sample 8

text: public

text: E-MTAB-3932:Sample 8

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: M0 /wild type K+R+

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 8


E-MTAB-3932:Sample 9

text: public

text: E-MTAB-3932:Sample 9

text: ArrayExpress

text: baker's yeast

text: M0 /wild type K+R+

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: wild type phenotype

text: Saccharomyces cerevisiae

text: Sample 9


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: male

characteristic: ArrayExpress-Sex

text: mus musculus

text: E14 ESC

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: ATAC-seq library, has nucleosomal distribution

characteristic: sample description

text: Mus musculus

text: E14 ESC

characteristic: strain


text: Yeast

characteristic: ArrayExpress-Phenotype

text: Saccharomyces cerevisiae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: EpiSC

characteristic: ArrayExpress-CellType

text: Mus Musculus

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mouse EpiSC RNA

text: Mus musculus


text: male

text: Homo Sapien

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: olfactory mucosa

characteristic: ArrayExpress-OrganismPart

text: Macaca mullata

text: SC

text: public

text: Rhesus monkey

text: Macaca mulatta

text: olfactory mucosa from macaque

characteristic: sample description

text: Macaca mulatta


E-MTAB-3958:Sample 1

text: public

text: E-MTAB-3958:Sample 1

tag: Namespace:Advanced Centre for Treatment Research and Education in Cancer

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: NT8e, OT9, AW13516, AW8507 lines were maintained in DMEM media. For clonal selection, growing culture was trypsinized and diluted as 1 cell per 100 ml of media and dispensed in a 96 well plate with follow up subculture of clones that survived. Transcriptome libraries for sequencing were constructed according to the manufacturer’s protocol. Briefly, mRNA was purified from 4μg of intact total RNA using oligodT beads (TruSeq RNA Sample Preparation Kit, Illumina). 7 pmol of each library was loaded on Illumina flow cell (version 3) for cluster generation on cBot cluster generation system (Illumina) and clustered flow cell was transferred to Illumina HiSeq1500 for paired end sequencing using Illumina paired end reagents TruSeq SBS Kit v3 (Illumina) for 200 cycle.

characteristic: description

text: head and neck squamous cell carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-3958:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Advanced Centre for Treatment Research and Education in Cancer

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3958:Sample 2

text: ArrayExpress

text: human

text: head and neck squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 2


E-MTAB-3958:Sample 3

text: public

characteristic: SRA accession

text: E-MTAB-3958:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: head and neck squamous cell carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: Sample 3


E-MTAB-3958:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3958:Sample 4

text: ArrayExpress

text: human

text: head and neck squamous cell carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: Sample 4


text: public

tag: Namespace:Stazione Zoologica Anton Dohrn Computational Genomics Biology and Evolution of Marine Organisms

text: ArrayExpress

characteristic: broker name

text: common octopus

text: Protocols: Three specimens of Octopus vulgaris (2 males, 1 female; body weight 300 g) were caught by local fishermen in the Bay of Napoli (Italy) during the summer 2012. Total RNA was isolated from the supra- (SEM) and sub-esophageal (SUB) masses, optic lobes (OL) and the arms (ARM) using SV total RNA isolation System (Promega, #Z3100) according to the manufacturerâs protocol. DNA was degraded by treating samples with Turbo DNase Kit (Ambion, #AM1907) according to the instruction manual. Quality and quantity of RNA was assessed by NanoDrop (Thermo-Fisher, #ND-2000) and RNA BioAnalyzer chip (Agilent Technologies, #5067-1513). Paired-end libraries were prepared using Illumina TruSeq RNA sample library preparation kit (Illumina, # RS-930-2002).

text: Octopus vulgaris

text: Octopus vulgaris

text: supraesophageal mass

characteristic: organism part

text: Octopus vulgaris


text: Stazione Zoologica Anton Dohrn Computational Genomics Biology and Evolution of Marine Organisms

text: public

text: ArrayExpress

text: common octopus

characteristic: description

text: Octopus vulgaris

text: Octopus vulgaris

text: subesophageal mass

text: Octopus vulgaris


text: public

text: ArrayExpress

text: common octopus

text: Octopus vulgaris

text: Octopus vulgaris

text: optic lobe

text: Octopus vulgaris


text: public

text: ArrayExpress

text: common octopus

text: Octopus vulgaris

text: Octopus vulgaris

text: arm

text: Octopus vulgaris


text: public

text: ArrayExpress

text: common octopus

text: Octopus vulgaris

text: Octopus vulgaris

text: supraesophageal mass

text: Octopus vulgaris


text: public

tag: Namespace:INRA, UMR1065 Sante et Agroecologie du Vignoble (SAVE), ISVV, 33883 Villenave dOrnon, France

characteristic: biological replicate

text: ArrayExpress

text: wine grape

text: Protocols: 2cm wood chunks were cut and snap-frozen in liquid Nitrogen untill used. Wood pieces were ground in liquid nitrogen using a a Tissue LyserII (Qiagen). Resulting powder was stored at -80AC until RNA extraction. RNA was extracted from 200 mg powder using a Qiagen RNeasy Plant Mini Kit. RNA libraries were prepared for sequencing using standard Illumina protocols. A TruSeq Stranded Total RNA with Ribo-Zero Plant kit was used.

text: 2 month old plantlets

characteristic: development stage

text: Vitis vinifera

text: Vitis vinifera

text: wood chunk

text: Vitis vinifera

text: Cabernet Sauvignon

characteristic: strain

text: Phaeomoniella chlamydospora wood infection

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA, UMR1065 Sante et Agroecologie du Vignoble (SAVE), ISVV, 33883 Villenave dOrnon, France

characteristic: INSDC last update

text: public

text: ArrayExpress

text: wine grape

text: 2 month old plantlets

text: Vitis vinifera

text: Vitis vinifera

text: wood chunk

text: Vitis vinifera

text: Cabernet Sauvignon

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wine grape

characteristic: common name

text: 2 month old plantlets

text: Vitis vinifera

text: Vitis vinifera

text: wood chunk

text: Vitis vinifera

text: Cabernet Sauvignon

text: Phaeomoniella chlamydospora wood infection AND Pythium oligandrum root inoculation


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

characteristic: INSDC center name

text: public

text: domesticated barley

text: Sequencing of barley BACs, that constitute the MTP of chromosome 7H. Sequencing was carried out by BGI China.

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: DNA from earclip

characteristic: sample description

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: DNA from blastocyst

text: Mus musculus

characteristic: strain


text: adult

characteristic: ArrayExpress-DevelopmentalStage

text: Reduced sensitivity and attenuated adaptation to odorant stimulation

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from whole olfactory mucosa

text: Mus musculus

text: mixed


text: adult

text: Normal sensitivity and adaptation to odorant stimulation

text: Mus Musculus

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: RNA from whole olfactory mucosa

text: Mus musculus

text: mixed


text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


text: Homo Sapien

text: SC

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Tumour

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: FACS-sorted OSNs

characteristic: ArrayExpress-OrganismPart

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: FACS-sorted OSN populations from mOR-EG mice

text: Mus musculus


text: FACS-sorted OSNs

text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: FACS-sorted OSN populations from mOR-I7 mice

characteristic: sample description

text: Mus musculus


text: olfactory mucosa

text: male

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: cryosection from mouse olfactory mucosa

text: Mus musculus

characteristic: strain


E-MTAB-3967:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3967:Sample 1

tag: Namespace:University of Chicago, Dept of Human Genetics

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Embryonic Tbx20-GFP mouse hearts 11.5dpf were dissected and cross-linked in1.8% of formaldehyde for 10 minutes at room temperature. Samples were quenched by incubation with 2.5 M glycine for 5 minutes. Cells were washed and resuspended in Lysis buffer (1% SDS, 10 mM EDTA, 50 mM Tris, pH 8.1). The cross-linked chromatin was sonicated using a Misonix 4000 (amplitude 90 and 30 seconds on/30 seconds off) to an average size of 200 bp. Precleared chromatin extract was incubated overnight at 4AC with goat anti-GFP and immunoprecipitated with protein AaSepharose beads. 10 ng of DNA was used to generate a standard Illumina sequencing library. Enrichment of selected target regions was confirmed by qRT-PCR. Illumina's standard protocol was used

characteristic: description

text: embryonic day 11.5

characteristic: developmental stage

text: anti-green fluorescent protein

characteristic: immunoprecipitate

text: Mus musculus

text: Mus musculus

text: whole heart

characteristic: organism part

text: wild-type

characteristic: phenotype

text: Mus musculus

text: Sample 1

characteristic: title


E-MTAB-3967:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Chicago, Dept of Human Genetics

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3967:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: embryonic day 11.5

text: Mus musculus

text: Mus musculus

text: whole heart

text: wild-type

text: Mus musculus

text: Sample 2


E-MTAB-3972:Sample 1

characteristic: ENA-LAST-UPDATE

text: University of Chicago

characteristic: INSDC first public

text: public

text: E-MTAB-3972:Sample 1

tag: Namespace:University of Chicago

text: ArrayExpress

text: endocardial

characteristic: cell type

text: house mouse

characteristic: date

text: Protocols: Hearts were harvested in icecold PBS with 0.5 mM EDTA and dissociated as described (Van Handel et al. 2012), using collagenase (10 mg/ml; Worthington) and dispase (10 mg/mL, Invitrogen). Cells were stained for 30 minutes, 4',6-diamidino-2-phenylindole (DAPI, 1:1000) was used to label dead cells. Tie2Cre lineage cells, negative for blood markers CD41, CD45 and Ter119, were sorted on an InfluxTM cell sorter (BD Biosciences) and collected in RNA lysis buffer (Agilent) or TRIzol reagent (Ambion) for RNA extraction, or PBS/5% serum for ATAC-Seq (Buenrostro et al. 2013). Van Handel B, Montel-Hagen A, Sasidharan R, Nakano H, Ferrari R, Boogerd CJ, Schredelseker J, Wang Y, Hunter S, Org T, et al. 2012. Scl represses cardiomyogenesis in prospective hemogenic endothelium and endocardium. Cell 150: 590605. Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ. 2013. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods 10: 12138. We performed ATAC-seq according to Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ. 2013. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods 10: 12138.

text: embryonic day 12.5

text: Mus musculus

characteristic: organism

text: Mus musculus

text: wild-type

characteristic: replicate

text: Mus musculus

text: Sample 1


E-MTAB-3972:Sample 2

characteristic: External Id

text: University of Chicago

text: public

text: E-MTAB-3972:Sample 2

text: ArrayExpress

characteristic: broker name

text: endocardial

text: house mouse

characteristic: description

text: embryonic day 12.5

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: wild-type

text: Mus musculus

text: Sample 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Diabetes Center, University of California, San Francisco (UCSF), San Francisco, California, USA.

text: 8-12 weeks

characteristic: age

text: ArrayExpress

text: adipocyte

text: house mouse

characteristic: compound

text: Protocols: 1mg/kg for 7 consecutive days Total RNA was extracted from FACS-isolated GFP+ adipocytes or preadipocytes using the RNeasy Micro Kit (Qiagen). RNA quality (RIN: RNA Integrity Number) was determined by Bioanalyzer (Agilent Technologies) and samples with RIN of >7.0 were subjected to RNA-seq. Libraries were constructed from minimum of 22 ng of total RNA as previously described (Nature 504 (7478), 163-167)

text: 1mg/kg for 7 consecutive days

characteristic: dose

text: Ucp1Cre/+;Rosa26-GFP reporter

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inguinal white adipose tissue

characteristic: organism part

text: Mus musculus

unit: day

characteristic: time

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Diabetes Center, University of California, San Francisco (UCSF), San Francisco, California, USA.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 8-12 weeks

text: ArrayExpress

text: adipocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: 1mg/kg for 7 consecutive days

text: Ucp1Cre/+;Rosa26-GFP reporter

text: Mus musculus

text: Mus musculus

text: inguinal white adipose tissue

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: 8-12 weeks

text: ArrayExpress

characteristic: broker name

text: preadipocyte

text: house mouse

characteristic: description

text: 1mg/kg for 7 consecutive days

text: Ucp1Cre/+;Rosa26-GFP reporter

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inguinal white adipose tissue

text: Mus musculus

text: Preadipocyte-A