text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TCTTAATTGAG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


status: PUBLIC

text: 6 hpf

tag: attribute

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGACAACGCTG) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGACGCGATTT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGAGGGCTCGG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGATTGATGGA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGCCCAGCATA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGCGCTCGGAT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGGCAAGTTCG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGGGCCTTTAG) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGGGTATCAGG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


text: 6 hpf

text: WT

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGGTTGTGGCC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGTAAGAATCA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGTAGCTTACC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGTCTATTCAC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGTGCATAGTT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGTTACCCGTA) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TGTTGAACTCC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTAACAAGTAT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTAAGGAAGTA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTATCGTCAAG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTCATCCAATA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTCCCGTTTAA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTCGGCCCAAT) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTCGTGCTTTC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTCTGATTTTG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTCTGGGAGAG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTGCACTTAAT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

characteristic: ArrayExpress-DevelopmentalStage

text: WT

characteristic: ArrayExpress-Genotype

text: WT

text: Danio rerio

text: T/LF

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTGCGATGTCC) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

characteristic: ArrayExpress-Phenotype

text: Danio rerio

characteristic: ArrayExpress-Species

text: T/LF

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTTAGCTCGGT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTTATTAGACG) is bases 11 to 21 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTTCGTGTAGA) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF

characteristic: strain


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTTGATTCTCG) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


text: 6 hpf

text: WT

text: WT

text: Danio rerio

text: T/LF

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single cells. An 11 base indexing sequence (TTTTCCAGCGT) is bases 11 to 21 of read 1 followed by CG and polyT.

text: Danio rerio

text: T/LF


E-MTAB-3736:Col-0 rep1 microsome

text: public

text: E-MTAB-3736:Col-0 rep1 microsome

tag: Namespace:Department of Biology University of Copenhagen

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: Microsome fractionation, deoxycholate solubilisation, AGO1 Immunopercipitation, TRIzol extaction NEBNext Small RNA Library Prep Set (Multiplex)

characteristic: description

text: LP.06 six leaves visible

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: microsomal AGO1-IP

characteristic: immunoprecipitate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col-0 rep1 microsome

characteristic: title

type: has member


E-MTAB-3736:Col-0 rep2 microsome

characteristic: ENA-CHECKLIST

text: Department of Biology University of Copenhagen

text: public

text: E-MTAB-3736:Col-0 rep2 microsome

text: ArrayExpress

text: thale cress

characteristic: common name

text: LP.06 six leaves visible

text: wild type genotype

text: microsomal AGO1-IP

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col-0 rep2 microsome


E-MTAB-3736:era1-2 rep1 microsome

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3736:era1-2 rep1 microsome

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: farnasyltransferase beta deletion

text: microsomal AGO1-IP

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: era1-2 rep1 microsome


E-MTAB-3736:era1-2 rep2 microsome

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3736:era1-2 rep2 microsome

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: farnasyltransferase beta deletion

text: microsomal AGO1-IP

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: era1-2 rep2 microsome


E-MTAB-3736:J3C417S rep1 microsome

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-3736:J3C417S rep1 microsome

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic J3C417S

text: microsomal AGO1-IP

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3C417S rep1 microsome


E-MTAB-3736:J3C417S rep2 microsome

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-3736:J3C417S rep2 microsome

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic J3C417S

text: microsomal AGO1-IP

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3C417S rep2 microsome


E-MTAB-3736:J3wt rep1 microsome

text: public

text: E-MTAB-3736:J3wt rep1 microsome

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic wt J3

text: microsomal AGO1-IP

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3wt rep1 microsome


E-MTAB-3736:J3wt rep2 microsome

text: public

text: E-MTAB-3736:J3wt rep2 microsome

text: ArrayExpress

text: thale cress

characteristic: description

text: LP.06 six leaves visible

characteristic: developmental stage

text: J2/J3 deletion, with transgenic wt J3

text: microsomal AGO1-IP

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3wt rep2 microsome


E-MTAB-3736:Col-0 rep1 total

text: public

text: E-MTAB-3736:Col-0 rep1 total

text: ArrayExpress

text: thale cress

text: Protocols: TRIzol extraction from seedling leaves NEBNext Small RNA Library Prep Set (Multiplex)

text: LP.06 six leaves visible

text: wild type genotype

characteristic: genotype

text: total

characteristic: immunoprecipitate

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col-0 rep1 total


E-MTAB-3736:Col-0 rep2 total

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3736:Col-0 rep2 total

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: wild type genotype

text: total

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Col-0 rep2 total

characteristic: title


E-MTAB-3736:era1-2 rep1 total

text: public

text: E-MTAB-3736:era1-2 rep1 total

text: ArrayExpress

text: thale cress

characteristic: common name

text: LP.06 six leaves visible

text: farnasyltransferase beta deletion

text: total

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: era1-2 rep1 total


E-MTAB-3736:era1-2 rep2 total

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3736:era1-2 rep2 total

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: farnasyltransferase beta deletion

text: total

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: era1-2 rep2 total


E-MTAB-3736:J3C417S rep1 total

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3736:J3C417S rep1 total

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic J3C417S

text: total

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3C417S rep1 total


E-MTAB-3736:J3C417S rep2 total

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-3736:J3C417S rep2 total

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic J3C417S

text: total

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3C417S rep2 total


E-MTAB-3736:J3wt rep1 total

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-3736:J3wt rep1 total

text: ArrayExpress

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic wt J3

text: total

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3wt rep1 total


E-MTAB-3736:J3wt rep2 total

text: public

text: E-MTAB-3736:J3wt rep2 total

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: LP.06 six leaves visible

text: J2/J3 deletion, with transgenic wt J3

text: total

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: J3wt rep2 total


text: Mouse ES cell

characteristic: ArrayExpress-CellType

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA

characteristic: sample description

text: Mus musculus


text: Mouse neural stem cell

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA

text: Mus musculus


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Dracunculus medinensis

text: Chad

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Guinea worm

characteristic: common name

text: Dracunculus medinensis

text: Dracunculus medinensis

text: Chad

characteristic: strain


text: Dracunculus medinensis

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Guinea worm

text: Dracunculus medinensis

characteristic: organism

text: Dracunculus medinensis


characteristic: External Id

text: Leibniz Institute on Aging - Fritz Lipmann Institute (FLI)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Leibniz Institute on Aging – Fritz Lipmann Institute (FLI)

text: turquoise killifish

text: adult

characteristic: dev stage

characteristic: individual name

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: male

characteristic: sex

text: GRZ

text: whole body

characteristic: tissue

text: Nothobranchius furzeri GRZ BAC sequencing fish nr5 (male)

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: turquoise killifish

text: adult

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: male

text: GRZ

text: whole body

text: Nothobranchius furzeri GRZ BAC sequencing fish nr3 (male)


characteristic: ENA-CHECKLIST

text: public

text: turquoise killifish

characteristic: common name

text: adult

text: Nothobranchius furzeri

text: Nothobranchius furzeri

text: male

text: GRZ

text: whole body

text: Nothobranchius furzeri GRZ BAC sequencing fish nr1 (male)


text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL

text: public

text: ArrayExpress

characteristic: broker name

text: ES cell line

characteristic: cell line

text: house mouse

text: Protocols: Inducible RsCre Rif1 ES cells have been cultured for two in presence of tamoxifen in order to delete Rif1. ChIP-seq libraries were prepared with NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina (NEB#E6240S/L), except that bead purification was employed (Agencourt AMPure XP beads, Beckman Coulter A63881). Size selection was performed on 2% agarose gels (E-Gel Invitrogen G6610-02). Generally 13 PCR cycles for 10ng starting material were applied. Libraries were barcoded with the NEBNext Multiplex Oligos for Illumina (Index Primers Set 1, NEB#E7335S/L).

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


text: EMBL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: ES cell line

text: house mouse

text: Rif1 knockout

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


text: Mus Musculus

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-3742:Pig A

characteristic: ENA-CHECKLIST

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig A

tag: Namespace:University of Pennsylvania

characteristic: Submitter Id

text: ~ 6 months

characteristic: age

text: Landrace x Yorkshire

characteristic: breed

text: ArrayExpress

text: endothelial cell of artery

characteristic: cell type

text: pig

characteristic: common name

text: Protocols: Animals were placed under general anesthesia and exsanguinated. The common carotid artery was dissected from the surrounding tissue, flushed with cold PBS, and incised lengthwise. Endothelial cells were freshly isolated by using a gentle mechanical scraping procedure. Cells were transferred directly to a lysis buffer containing RNase inhibitors and transported on dry ice. Total RNA was isolated by mirVana miRNA Isolation Kit (Life Technologies). The quality of RNA was evaluated by NanoDrop 1000 Spectrophotometer and TapeStation 2200 (Agilent Technologies). TruSeq RNA Sample prep library construction V2, starting input 200 ng.

text: Sus scrofa

text: Sus scrofa

text: artery

characteristic: organism part

text: common carotid

characteristic: region

text: Sus scrofa

text: male

characteristic: sex

text: Pig A


E-MTAB-3742:Pig AA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig AA

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

characteristic: broker name

text: endothelial cell of artery

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig AA


E-MTAB-3742:Pig B

text: University of Pennsylvania

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3742:Pig B

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig B

characteristic: title


E-MTAB-3742:Pig BB

characteristic: ENA-CHECKLIST

text: University of Pennsylvania

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3742:Pig BB

characteristic: Submitter Id

text: ~ 6 months

characteristic: age

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig BB


E-MTAB-3742:Pig C

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig C

text: ~ 6 months

text: Landrace x Yorkshire

characteristic: breed

text: ArrayExpress

text: endothelial cell of artery

characteristic: cell type

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: artery

characteristic: organism part

text: common carotid

characteristic: region

text: Sus scrofa

text: male

text: Pig C


E-MTAB-3742:Pig CC

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig CC

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

characteristic: broker name

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

characteristic: sex

text: Pig CC


E-MTAB-3742:Pig D

text: University of Pennsylvania

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3742:Pig D

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

characteristic: description

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig D


E-MTAB-3742:Pig DD

characteristic: ENA-CHECKLIST

text: University of Pennsylvania

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3742:Pig DD

characteristic: Submitter Id

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig DD

characteristic: title


E-MTAB-3742:Pig E

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig E

text: ~ 6 months

characteristic: age

text: Landrace x Yorkshire

characteristic: breed

text: ArrayExpress

text: endothelial cell of artery

characteristic: cell type

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: artery

characteristic: organism part

text: common carotid

text: Sus scrofa

text: male

text: Pig E


E-MTAB-3742:Pig EE

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig EE

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

characteristic: broker name

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

characteristic: region

text: Sus scrofa

text: male

text: Pig EE


E-MTAB-3742:Pig F

text: University of Pennsylvania

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3742:Pig F

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

characteristic: sex

text: Pig F


E-MTAB-3742:Pig FF

characteristic: ENA-CHECKLIST

text: University of Pennsylvania

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3742:Pig FF

characteristic: Submitter Id

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig FF


E-MTAB-3742:Pig G

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig G

text: ~ 6 months

characteristic: age

text: Landrace x Yorkshire

characteristic: breed

text: ArrayExpress

text: endothelial cell of artery

characteristic: cell type

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig G

characteristic: title


E-MTAB-3742:Pig GG

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig GG

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

characteristic: broker name

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

characteristic: organism part

text: common carotid

text: Sus scrofa

text: male

text: Pig GG


E-MTAB-3742:Pig H

text: University of Pennsylvania

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3742:Pig H

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

characteristic: region

text: Sus scrofa

text: male

text: Pig H


E-MTAB-3742:Pig HH

characteristic: ENA-CHECKLIST

text: University of Pennsylvania

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3742:Pig HH

characteristic: Submitter Id

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

characteristic: sex

text: Pig HH


E-MTAB-3742:Pig I

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig I

text: ~ 6 months

characteristic: age

text: Landrace x Yorkshire

characteristic: breed

text: ArrayExpress

text: endothelial cell of artery

characteristic: cell type

text: pig

characteristic: common name

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig I


E-MTAB-3742:Pig II

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Pennsylvania

text: public

text: E-MTAB-3742:Pig II

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

characteristic: broker name

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

text: Sus scrofa

text: male

text: Pig II

characteristic: title


E-MTAB-3742:Pig J

text: University of Pennsylvania

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3742:Pig J

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

characteristic: description

text: Sus scrofa

text: Sus scrofa

text: artery

characteristic: organism part

text: common carotid

text: Sus scrofa

text: male

text: Pig J


E-MTAB-3742:Pig JJ

characteristic: ENA-CHECKLIST

text: University of Pennsylvania

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3742:Pig JJ

characteristic: Submitter Id

text: ~ 6 months

text: Landrace x Yorkshire

text: ArrayExpress

text: endothelial cell of artery

text: pig

text: Sus scrofa

text: Sus scrofa

text: artery

text: common carotid

characteristic: region

text: Sus scrofa

text: male

text: Pig JJ


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Homo Sapien

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

characteristic: organism

characteristic: sample description

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPI-TUEBINGEN

text: public

characteristic: collection date

text: thale cress

text: Herbarium sample from New York Botanical Garden

text: USA

characteristic: geographic location (country and/or sea)

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: MPI-TUEBINGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: tomato

text: Herbarium sample from Natural History Museum London

text: UK

text: Solanum lycopersicum

text: Solanum lycopersicum

characteristic: title


characteristic: ENA-CHECKLIST

text: MPI-TUEBINGEN

text: public

characteristic: INSDC status

text: thale cress

text: Herbarium sample from Cornell Bailey Hortorium

characteristic: description

text: USA

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: MPI-TUEBINGEN

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: Herbarium sample from Max Planck Institute for Developmental Biology collection

text: USA

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: MPI-TUEBINGEN

text: public

text: thale cress

characteristic: common name

text: Herbarium sample from Chicago Field Museum

text: USA

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

text: MPI-TUEBINGEN

text: public

text: thale cress

text: Herbarium sample from University of North Carolina Herbarium

text: USA

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: MPI-TUEBINGEN

text: public

text: thale cress

text: Herbarium sample from Ohio State University Herbarium

text: USA

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana


text: MPI-TUEBINGEN

text: public

text: thale cress

text: Herbarium sample from University of Connecticut Herbarium

text: USA

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Haemonchus contortus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

characteristic: strain


text: Haemonchus contortus

text: Swiss

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Swiss


E-MTAB-3749:Bulk data 1

text: EBI

characteristic: INSDC center name

text: public

text: E-MTAB-3749:Bulk data 1

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: 2i+LIF conditions (1M PD0325901 (Stemgent), 3M CHIR99021 (Stemgent), 100 U/ml recombinant human leukemia inhibitory factor (Millipore)). Asynchronous mES cells were stained with DNA dye (Hoechst) and sorted for cell cycle stage based on DNA content (2n-G1 stage, 2n:4n-S stage and 4n-G2M stage) Bulk cells were lysed as per Wellcome Trust Sample preparation guidelines Bulk mRNA sequencing libraries were generated using Illumina TruSeq Stranded RNA Sample preparation kit as per Wellcome Trust Sample preparation guidelines

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Bulk data 1


E-MTAB-3749:Bulk data 2

characteristic: ENA-CHECKLIST

text: EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3749:Bulk data 2

text: ArrayExpress

text: S

text: embryonic stem cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Bulk data 2

characteristic: title


E-MTAB-3749:Bulk data 3

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

characteristic: SRA accession

text: E-MTAB-3749:Bulk data 3

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: common name

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Bulk data 3


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: strain


text: Gallus gallus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: chicken

text: Gallus gallus

text: Gallus gallus


text: mouse ES cells

characteristic: ArrayExpress-CellType

text: CHIP

characteristic: ArrayExpress-Immunoprecipitate

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: ChIP library

characteristic: sample description

text: Mus musculus


text: ESC

text: Control Goat

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Immunoprecipitated RNA

text: Mus musculus


text: ESC

text: male

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Immunoprecipitated RNA

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: In three biological repeat experiments, root tips representing the root meristems (<3 mm) were harvested with a scalpel. Pend:bZIP29-SRDX line 1 and corresponding out-segregated WT line 1 plants were grown for 5 DAS on nylon meshes (Prosep), placed on vertical 1â2 MS medium-containing plates. Total RNA was isolated using the RNeasy Plant mini kit (Qiagen) and treated with RQ1 RNase-Free DNase I (Promega). TruSeq RNA-seq

characteristic: description

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root tip

characteristic: organism part

text: dominant negative bZIP29

characteristic: phenotype

text: Arabidopsis thaliana

characteristic: title


characteristic: External Id

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium Department of Plant Systems Biology,VIB, Gent, Belgium

characteristic: INSDC center name

text: public

text: ArrayExpress

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: root tip

text: dominant negative bZIP29

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: thale cress

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: root tip

text: wild type

text: Arabidopsis thaliana


text: DTU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Pima individual

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Altai individual 1

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Altai individual 2

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: DTU

text: public

text: human

text: Ket individual 1

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ket individual 2

characteristic: description

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Sakha individual 1

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Sakha individual 2

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Siberian Yupik individual 17

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Siberian Yupik individual 20

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample 939

text: Homo sapiens

text: Homo sapiens


Chinchorro

text: DTU

text: public

text: Chinchorro

text: human

text: Ancient sample Chinchorro

text: Homo sapiens

text: Homo sapiens

text: Chinchorro


text: DTU

text: public

text: human

text: Ancient sample Enoque65

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample MARC1492

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Yaghan 890

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Yaghan 894

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Yaghan 895

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Kaweskar AM71

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Pericues BC23

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Pericues BC25

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Pericues BC27

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Pericues BC28

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Pericues BC29

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Pericues BC30

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Sierra Tarahumara F9

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Selknam MA572

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Selknam MA575

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Selknam MA577

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Sierra Tarahumara MOM6

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Kaweskar Nr66

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Kaweskar Nr72

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Kaweskar Nr73

text: Homo sapiens

text: Homo sapiens


text: DTU

text: public

text: human

text: Ancient sample Kaweskar Nr74

text: Homo sapiens

text: Homo sapiens


characteristic: ArrayExpress-CellType

text: Iscove's Modified Dulbecco's Medium_10% HI FBS_0.4 U/ml epogen

characteristic: ArrayExpress-GrowthCondition

text: CTCF

characteristic: ArrayExpress-Immunoprecipitate

text: Normal

characteristic: ArrayExpress-Phenotype

text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

text: Homo sapiens

text: UT7 CTCF ChIP DNA

characteristic: sample description

text: Homo sapiens


text: Normal

text: Homo Sapien

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

characteristic: organism

text: UT7 H3K4me3 ChIP DNA

text: Homo sapiens


text: Normal

text: Homo Sapien

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: UT7 H3K27me3 ChIP DNA

text: Homo sapiens


text: Spleen

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus


text: Spleen

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Spleen

text: female

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Tail

text: female

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Tail

text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Ear

text: female

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Amplicon

text: Mus musculus


text: nsc neural stem cells

characteristic: ArrayExpress-CellType

text: to be provided

characteristic: ArrayExpress-GrowthCondition

text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: nsc neural stem cells DNAse assay

text: Mus musculus


text: Mouse Tail

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Liver

characteristic: ArrayExpress-OrganismPart

text: Oryzias latipes

characteristic: External Id

text: SC

text: public

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5829 1L

characteristic: sample description

text: Oryzias latipes


text: Liver

text: Oryzias latipes

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

text: Japanese medaka

text: Oryzias latipes

characteristic: organism

text: Total RNA from 5829 3L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5842 2L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5844 1L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5845 3L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

text: SC

text: public

characteristic: Submitter Id

text: Japanese medaka

characteristic: common name

text: Oryzias latipes

text: Total RNA from 5846 1L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

text: SC

text: public

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5846 2L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

text: SC

text: public

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5847 2L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

text: SC

text: public

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 5847 4L

text: Oryzias latipes


text: Liver

text: Oryzias latipes

text: SC

text: public

text: Japanese medaka

text: Oryzias latipes

text: Total RNA from 6097 1L

text: Oryzias latipes


text: WEIZMANN INSTITUE OF SCIENCE

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: title


text: T cell

characteristic: ArrayExpress-CellType

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNAseq library made from purified mRNA

text: Mus musculus

characteristic: strain


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNAseq library made from purified mRNA

text: Mus musculus


text: Hypothalamus

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNAseq library made from purified mRNA

characteristic: sample description

text: Mus musculus


text: olfactory tissue

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: RNAseq library made from purified mRNA

text: Mus musculus


text: 6-12 weeks

characteristic: ArrayExpress-Age

text: wild type

characteristic: ArrayExpress-Genotype

text: Spleen

characteristic: ArrayExpress-OrganismPart

text: mixed

characteristic: ArrayExpress-Sex

text: Mus musculus

text: Wild type

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: RNA from cells

text: Mus musculus

text: Wild type


text: INPUT

characteristic: ArrayExpress-Immunoprecipitate

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Lin_neg_bone marrow

text: Mus musculus


text: female

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Lin_neg_bone marrow

text: Mus musculus


text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Lin_neg_bone marrow

characteristic: sample description

text: Mus musculus


text: INPUT

text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Lin_neg_bone marrow

text: Mus musculus


text: mESC E14

characteristic: ArrayExpress-CellType

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: CRISPR repressor of Ptma

text: Mus musculus

characteristic: strain


text: mESC E14

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: CRISPR repressor of Set

text: Mus musculus


text: mESC E14

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: CRISPR repressor of Zfp710

text: Mus musculus


text: mESC E14

text: male

text: Mus Musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: CRISPR repressor of Zfp640

text: Mus musculus


text: mESC E14

text: male

text: Mus Musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: CRISPR repressor of Kat6b

text: Mus musculus


text: mESC E14

text: male

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: CRISPR repressor of Etv5

text: Mus musculus


text: mESC E14

text: male

text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: CRISPR repressor of Dpy30

text: Mus musculus


text: mESC E14

text: male

text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: control

characteristic: sample description

text: Mus musculus


text: Mouse

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Plasmodium falciparum

text: NF54-PiggyBac Mutant

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: NF54-PiggyBac Mutant


E-MTAB-3781:SKI2/rdr6 rep1

text: Department of Biology University of Copenhagen

text: public

text: E-MTAB-3781:SKI2/rdr6 rep1

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: TRIzol extraction from flower petals NEBNext Small RNA Library Prep Set (Multiplex)

characteristic: description

text: RDR6 mutant

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

characteristic: organism part

text: Arabidopsis thaliana

text: SKI2/rdr6 rep1

characteristic: title


E-MTAB-3781:SKI2/rdr6 rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3781:SKI2/rdr6 rep2

text: ArrayExpress

text: thale cress

text: RDR6 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: SKI2/rdr6 rep2


E-MTAB-3781:ski2-4/RDR6 rep1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3781:ski2-4/RDR6 rep1

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

characteristic: common name

text: SKI2 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: ski2-4/RDR6 rep1


E-MTAB-3781:ski2-4/RDR6 rep2

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-3781:ski2-4/RDR6 rep2

text: ArrayExpress

text: thale cress

text: SKI2 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: ski2-4/RDR6 rep2


E-MTAB-3781:ski2-4/rdr6 rep1

text: public

text: E-MTAB-3781:ski2-4/rdr6 rep1

text: ArrayExpress

text: thale cress

text: SKI2 mutant and RDR6 mutant

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: ski2-4/rdr6 rep1


E-MTAB-3781:ski2-4/rdr6 rep2

text: public

text: E-MTAB-3781:ski2-4/rdr6 rep2

text: ArrayExpress

characteristic: broker name

text: thale cress

text: SKI2 mutant and RDR6 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: ski2-4/rdr6 rep2


E-MTAB-3781:SKI2/RDR6 rep1

text: public

text: E-MTAB-3781:SKI2/RDR6 rep1

text: ArrayExpress

text: thale cress

characteristic: description

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: SKI2/RDR6 rep1


E-MTAB-3781:SKI2/RDR6 rep2

text: public

text: E-MTAB-3781:SKI2/RDR6 rep2

text: ArrayExpress

text: thale cress

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: petal

text: Arabidopsis thaliana

text: SKI2/RDR6 rep2


text: public

tag: Namespace:Institute for molecular and tumor biology Philipps University  Marburg Germany

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: 'VR002: SKOV3 cells were cultured in McCoy''s 5a medium supplemented with 10 % fetal bovine serum (FBS) and 1 % penicillin and streptomycin at 37°C and 5 % CO2. Cells grow adherent. (Harvesting: 1d after plating the cellsVRN). VR015: SKOV3 cells were cultured in McCoy''s 5a medium supplemented with 10 % fetal bovine serum (FBS) and 1 % penicillin and streptomycin at 37°C and 5 % CO2 and Carboplatin was added at every splitting step/medium change from the beginning on (6μM).Cells grow adherent for 20 weeks. After that they were cultured without Carboplatin for 14 days.' 'RNA was extracted using NucleoSpin RNA-kit (Macherey-Nagel) according to manufacturer''s instructions.' Illumina-compatible libraries were made using the Epicentre Scriptseq human/mouse/rat low input Gold kit.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: SKOV


text: Institute for molecular and tumor biology Philipps University Marburg Germany

text: public

text: ArrayExpress

text: human

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: SKOV+CP

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: PSB-D

text: thale cress

text: Protocols: Transgene cell cultures were 640 generated (Van Leene et al., 2011) as previously described TChAP from cell suspension cultures was done according to Verkest et al. (2014) Libraries were prepared according to the protocol of Illumina (www.illumina.com/sequencing/)

text: Landsberg

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana


E-MTAB-3754:mock control

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: E-MTAB-3754:mock control

text: ArrayExpress

text: PSB-D

text: thale cress

text: Landsberg

text: Control WT HBH

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: mock control


E-MTAB-3784:AA/F2 - 2D

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3784:AA/F2 - 2D

tag: Namespace:Department of Developmental Genetics, Max Planck Institute for Molecular Genetics

text: ArrayExpress

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: ESCs and EpiSCs were cultured according to standard conditions. Feeder-free ESCs were seeded on fibronectin (3-5 ng/ml)-coated plates in ESC medium containing LIF, PD0325901 (1 μM) and CHIR99021 (3 μM) (Axon Medchem, Axon 1386) (2i medium). The cells were re-fed the next day with 2i medium again (N2B27 medium (Yao et al., 2006) with LIF, PD0325901 and CHIR99021) to bring them to a naive state of pluripotency. The following day, the medium was replaced with EpiSC medium (N2B27 medium + Activin A (20 ng/ml) + FGF2 (10 ng/ml)). The medium was replaced with fresh EpiSC medium and fresh ligands every day, for 3 days (72 hours) to convert them to an EpiSC-state. Then, for PSM induction, the cells were fed with N2B27 medium containing CHIR99021 (3μM) either alone or along with FGF ligands, FGF2 or FGF8 (Low concentration: 10 ng/ml or High concentration: 250ng/ml). Medium was replaced along with fresh ligands every day for 2-3 days. In vitro: Cells were rinsed with PBS and trypsinised with cold Trypsin, spun-down at high speed (10,000 RPM) for 0.5 minute and re-suspended in cold Knock-out DMEM and placed on ice. In vivo: The embryos (E8,75) generated via tetraploid complementation from Tbx6-transgenic ESCs were dissected from uteri in PBS and transferred to M2 medium (Sigma) for staging and micro-dissection. The caudal ends (up to the presomite-2 region), containing the PSMs were dissected-out from embryos and pooled. Without much time-delay, the cells were sorted on FACS Aria II (Becton Dickinson) directly into RLT buffer containing β-mercaptoethanol, followed by total RNA isolation employing the RNeasy Micro Kit (Qiagen) and further processing. The unsorted cells were directly lysed with the RLT buffer in the cell-culture wells, after rinsing once with PBS. As a precautionary measure, to avoid genomic DNA, an extra step of DNase I (Roche) treatment was carried out. RNA was quantified using the spectrophotometer from either NanoDrop Technologies (unsorted cells) or Qubit (Invitrogen) (FACS-sorted cells). 'RNA-seq was performed using 80 ng of total RNA. The total RNA was quantified with Qubit fluorometer using the RNA HS kit (Invitrogen) and the quality was assessed with RNA Pico kit (Agilent Technologies) using an Agilent Bioanalzyer. Only samples with high RIN (RNA integrity number) scores (>9) and intact 28S-18S rRNA bands were processed. RNA-Seq library was prepared from total RNA using the ScriptSeq Complete Kit (Human/Mouse/Rat)-Low Input (SCL24H) (Illumina) according to manufacturer''s instructions. After library preparation and before sequencing, the libraries were quantified using the Qubit DNA HS kit (Invitrogen) and checked again on bioanalyzer using the DNA HS chips (Agilent Technologies). During library preparation, the rRNA-depleted sample-purification was done using the RNeasy MinElute Cleanup Kit (Cat. No. 74204, Qiagen) and cDNA-purification was done using MinElute PCR Purification Kit (Qiagen). For amplification, 15 cycles were used (using Failsafe enzyme). The quality of the cDNA libraries for sequencing was assessed using Bioanalyzer (Agilent Technologies). '

text: whole cell lysate

characteristic: fraction

text: transgenic

characteristic: genetic modification

text: Tbx6 reporter

text: AA (Activin A) (20 ng/ml) and F2 (FGF2) (10 ng/ml) for 2 days

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain

text: AA/F2 - 2D


E-MTAB-3784:AA/F2 - 3D

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Department of Developmental Genetics, Max Planck Institute for Molecular Genetics

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-3784:AA/F2 - 3D

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

characteristic: common name

text: whole cell lysate

text: transgenic

text: Tbx6 reporter

text: AA (Activin A) (20 ng/ml) and F2 (FGF2) (10 ng/ml) for 3 days

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: AA/F2 - 3D


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: mouse embryonic stem cell

text: house mouse

characteristic: description

text: Tbx6-positive cells

text: transgenic

text: Tbx6 reporter

characteristic: genotype

text: AA/F2 - 3D, followed by CHIR99021 (3 uM)

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: CH

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: whole cell lysate

text: transgenic

text: Tbx6 reporter

text: Standard EpiSC culture condition (Activin A (20 ng/ml) and FGF2 (10 ng/ml))

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: EpiSCs


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

text: whole cell lysate

characteristic: fraction

text: transgenic

characteristic: genetic modification

text: Tbx6 reporter

text: ESCs brought to naive state of pluripotency

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain

text: ESCs


E-MTAB-3784:FGF2 High/ CH

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-3784:FGF2 High/ CH

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

characteristic: common name

text: Tbx6-positive cells

text: transgenic

text: Tbx6 reporter

text: AA/F2 - 3D, followed by CHIR99021 (3 uM) + FGF2 (250 ng/ml)

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: FGF2 High/ CH


E-MTAB-3784:FGF8 High/ CH

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-3784:FGF8 High/ CH

text: ArrayExpress

characteristic: broker name

text: mouse embryonic stem cell

text: house mouse

characteristic: description

text: Tbx6-positive cells

text: transgenic

text: Tbx6 reporter

characteristic: genotype

text: AA/F2 - 3D, followed by CHIR99021 (3 uM) + FGF8 (250 ng/ml)

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: FGF8 High/ CH


E-MTAB-3784:FGF8 Low/ CH

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3784:FGF8 Low/ CH

text: ArrayExpress

text: mouse embryonic stem cell

text: house mouse

text: Tbx6-positive cells

text: transgenic

text: Tbx6 reporter

text: AA/F2 - 3D, followed by CHIR99021 (3 uM) + FGF8 (10 ng/ml)

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: FGF8 Low/ CH

characteristic: title


E-MTAB-3784:Tbx6+ E8.75

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3784:Tbx6+ E8.75

text: ArrayExpress

text: mouse embryonic stem cell

characteristic: cell type

text: house mouse

text: Tbx6-positive cells

characteristic: fraction

text: transgenic

characteristic: genetic modification

text: Tbx6 reporter

text: primary cells from caudal end of E8.75 mouse embryos

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Tbx6+ E8.75


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


E-MTAB-3789:pcm14 (1)

characteristic: ENA-FIRST-PUBLIC

text: Brighton and Sussex Medical School

text: public

text: E-MTAB-3789:pcm14 (1)

tag: Namespace:Brighton and Sussex Medical School

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: Protocols: null pcm mutants pcm14 and pcm15 were induced by excision of P elements from Bloomington stocks 11456 and 33263 respectively. Homo/hemizygous pcm14 and pcm15 mutants are lethal at the pupal stage and were balanced over FM7i-GFP. Homo/hemizygous pcm14 and pcm15 mutants were selected under UV light (non-GFP larvae). wild-type 1 is a clean excision of the same P-element used to create pcm14. wild-type 2 is a clean excision of the same P-element used to create pcm15. 60 L3 wing imaginal discs were dissected per biological replicate for wild-type samples. 120 L3 wing imaginal discs were dissected per replicate for pcm14 and pcm15. RNA was extracted using a Qiagen miRNeasy micro kit (217084) with on-column DNase treatment (79254) Sequencing libraries were created using an Illumina TruSeq RNA Sample Prep Kit v2

characteristic: description

text: L3 larva

characteristic: developmental stage

text: pcm null

text: w[1118], pcm[14]/FM7i-GFP

characteristic: genotype

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

characteristic: organism part

text: Drosophila melanogaster

text: pcm14 (1)


E-MTAB-3789:pcm14 (2)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Brighton and Sussex Medical School

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3789:pcm14 (2)

text: ArrayExpress

text: fruit fly

text: L3 larva

text: pcm null

text: w[1118], pcm[14]/FM7i-GFP

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: pcm14 (2)

characteristic: title


E-MTAB-3789:pcm14 (3)

characteristic: External Id

text: Brighton and Sussex Medical School

characteristic: INSDC center name

text: public

text: E-MTAB-3789:pcm14 (3)

text: ArrayExpress

text: fruit fly

text: L3 larva

text: pcm null

characteristic: genetic modification

text: w[1118], pcm[14]/FM7i-GFP

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: pcm14 (3)


E-MTAB-3789:pcm15 (1)

characteristic: ENA-FIRST-PUBLIC

text: Brighton and Sussex Medical School

text: public

characteristic: SRA accession

text: E-MTAB-3789:pcm15 (1)

characteristic: Submitter Id

text: ArrayExpress

text: fruit fly

text: L3 larva

text: pcm null

text: w[1118], pcm[15]/FM7i-GFP

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: pcm15 (1)


E-MTAB-3789:pcm15 (2)

text: Brighton and Sussex Medical School

text: public

text: E-MTAB-3789:pcm15 (2)

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

characteristic: description

text: L3 larva

text: pcm null

text: w[1118], pcm[15]/FM7i-GFP

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: pcm15 (2)


E-MTAB-3789:pcm15 (3)

text: Brighton and Sussex Medical School

text: public

text: E-MTAB-3789:pcm15 (3)

text: ArrayExpress

text: fruit fly

text: L3 larva

characteristic: developmental stage

text: pcm null

text: w[1118], pcm[15]/FM7i-GFP

characteristic: genotype

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

characteristic: organism part

text: Drosophila melanogaster

text: pcm15 (3)


E-MTAB-3789:wild-type 1 (1)

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Brighton and Sussex Medical School

characteristic: INSDC first public

text: public

text: E-MTAB-3789:wild-type 1 (1)

text: ArrayExpress

text: fruit fly

text: L3 larva

text: wild-type

text: w[1118], 50E

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: wild-type 1 (1)


E-MTAB-3789:wild-type 1 (2)

text: Brighton and Sussex Medical School

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3789:wild-type 1 (2)

text: ArrayExpress

text: fruit fly

text: L3 larva

text: wild-type

text: w[1118], 50E

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: wild-type 1 (2)


E-MTAB-3789:wild-type 1 (3)

characteristic: External Id

text: Brighton and Sussex Medical School

characteristic: INSDC center name

text: public

text: E-MTAB-3789:wild-type 1 (3)

text: ArrayExpress

text: fruit fly

text: L3 larva

text: wild-type

text: w[1118], 50E

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: wild-type 1 (3)

characteristic: title


E-MTAB-3789:wild-type 2 (1)

characteristic: ENA-FIRST-PUBLIC

text: Brighton and Sussex Medical School

text: public

characteristic: SRA accession

text: E-MTAB-3789:wild-type 2 (1)

text: ArrayExpress

text: fruit fly

text: L3 larva

text: wild-type

characteristic: genetic modification

text: w[1118], 166V

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: wild-type 2 (1)


E-MTAB-3789:wild-type 2 (2)

text: Brighton and Sussex Medical School

text: public

text: E-MTAB-3789:wild-type 2 (2)

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: fruit fly

characteristic: common name

text: L3 larva

text: wild-type

text: w[1118], 166V

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: wild-type 2 (2)


E-MTAB-3789:wild-type 2 (3)

text: Brighton and Sussex Medical School

text: public

text: E-MTAB-3789:wild-type 2 (3)

text: ArrayExpress

text: fruit fly

characteristic: description

text: L3 larva

characteristic: developmental stage

text: wild-type

text: w[1118], 166V

characteristic: genotype

text: Drosophila melanogaster

text: Drosophila melanogaster

text: wing disc

text: Drosophila melanogaster

text: wild-type 2 (3)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Rothamsted Research

text: public

tag: Namespace:Rothamsted Research

text: 1 day

characteristic: age

text: ArrayExpress

text: cotton bollworm

text: Protocols: Insects snap frozen in liquid nitrogen prior to storage in -80C Insect larvae reared to adults on artificial diet in controlled environment Adult moths flown during a single night Bioline ISOLATE II RNA Mini Kit Illumina barcoded TruSeq (performed by TGAC)

characteristic: mean tethered flight distance

text: Helicoverpa armigera

text: Helicoverpa armigera

text: whole organism

characteristic: organism part

text: short-distance flier

characteristic: phenotype

text: Helicoverpa armigera

text: female

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Rothamsted Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 1 day

text: ArrayExpress

text: cotton bollworm

text: Helicoverpa armigera

characteristic: organism

text: Helicoverpa armigera

text: whole organism

text: long-distance flier

text: Helicoverpa armigera

text: female

text: frozen specimen

characteristic: title


E-MTAB-3769:Sample 13

text: public

characteristic: SRA accession

text: E-MTAB-3769:Sample 13

tag: Namespace:Ecogenomics Group Biodiversity and Molecular Ecology Department Fondazione Edmund Mach

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: giant reed

characteristic: common name

text: Protocols: Collection of shoot and root samples has been carried out with scissors. Samples have been immediately frozen in liquid nitrogen. Roots have been quickly rinsed in water and gently blotted on paper before freezing. For shoots the aerial part of plants have been cut with a sharp scissor with a single cut above the third leaf. The whole root system has been collected. Plants were grown in hydroponic culture (1% Hoagland solution) in a growth chamber for about 2-4 weeks with the following settings: long day illumination (16hrs light, 8hrs dark), light intensity of 150 micromol of photons m-2 s-1, temperature 24Â°C, humidity 60% RH. At the three leaves stage, two cohorts of cuttings were transferred to 1% Hoagland solution containing either 10% or 20% PEG 6000, while a third cohort used as control was transferred to 1% Hoagland solution without PEG. After 1 hr the tissues above the third leaf and roots were separately collected from each cohort, quickly rinsed in distilled water and snap-frozen in liquid nitrogen. 'Extraction of total RNA was carried out with the Spectrum Plant Total RNA Extraction Kit (Sigma) according to manufacturer''s instructions' 'Paired-end RNA-Seq libraries were prepared using the TrueSeq RNA Sample Prep V2 Kit (Illumina, San Diego, CA) according to manufacturer''s instructions'

characteristic: description

text: three leaves vegetative stage

characteristic: developmental stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: 10% polyethylene glycol

characteristic: stimulus

text: Sample 13


E-MTAB-3769:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Ecogenomics Group Biodiversity and Molecular Ecology Department Fondazione Edmund Mach

text: public

text: E-MTAB-3769:Sample 14

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: root

characteristic: organism part

text: Arundo donax

text: 10% polyethylene glycol

text: Sample 14


E-MTAB-3769:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: E-MTAB-3769:Sample 15

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: 10% polyethylene glycol

text: Sample 15


E-MTAB-3769:Sample 4

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3769:Sample 4

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: 10% polyethylene glycol

text: Sample 4


E-MTAB-3769:Sample 5

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3769:Sample 5

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: 10% polyethylene glycol

text: Sample 5


E-MTAB-3769:Sample 6

text: public

text: E-MTAB-3769:Sample 6

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

characteristic: organism

text: Arundo donax

text: shoot

text: Arundo donax

text: 10% polyethylene glycol

text: Sample 6

characteristic: title


E-MTAB-3769:Sample 16

text: public

characteristic: SRA accession

text: E-MTAB-3769:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: 20% polyethylene glycol

text: Sample 16


E-MTAB-3769:Sample 17

text: public

text: E-MTAB-3769:Sample 17

text: ArrayExpress

characteristic: broker name

text: giant reed

characteristic: common name

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: 20% polyethylene glycol

text: Sample 17


E-MTAB-3769:Sample 18

text: public

text: E-MTAB-3769:Sample 18

text: ArrayExpress

text: giant reed

characteristic: description

text: three leaves vegetative stage

characteristic: developmental stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: 20% polyethylene glycol

text: Sample 18


E-MTAB-3769:Sample 7

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3769:Sample 7

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: 20% polyethylene glycol

characteristic: stimulus

text: Sample 7


E-MTAB-3769:Sample 8

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-3769:Sample 8

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

characteristic: organism part

text: Arundo donax

text: 20% polyethylene glycol

text: Sample 8


E-MTAB-3769:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: E-MTAB-3769:Sample 9

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: 20% polyethylene glycol

text: Sample 9


E-MTAB-3769:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-3769:Sample 1

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: Sample 1


E-MTAB-3769:Sample 10

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3769:Sample 10

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: Sample 10


E-MTAB-3769:Sample 11

text: public

text: E-MTAB-3769:Sample 11

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

characteristic: organism

text: Arundo donax

text: root

text: Arundo donax

text: Sample 11

characteristic: title


E-MTAB-3769:Sample 12

text: public

characteristic: SRA accession

text: E-MTAB-3769:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: giant reed

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: root

text: Arundo donax

text: Sample 12


E-MTAB-3769:Sample 2

text: public

text: E-MTAB-3769:Sample 2

text: ArrayExpress

characteristic: broker name

text: giant reed

characteristic: common name

text: three leaves vegetative stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: Sample 2


E-MTAB-3769:Sample 3

text: public

text: E-MTAB-3769:Sample 3

text: ArrayExpress

text: giant reed

characteristic: description

text: three leaves vegetative stage

characteristic: developmental stage

text: Arundo donax

text: Arundo donax

text: shoot

text: Arundo donax

text: Sample 3


E-MTAB-3792:Sample 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3792:Sample 1

tag: Namespace:Telethon Institute of Genetics and Medicine, TIGEM

characteristic: age

text: ArrayExpress

text: Non visually impaired donor

characteristic: clinical history

text: human

text: Protocols: In collaboration with the Fondazione Banca degli Occhi del Veneto (FBOV), we collected retina samples from 18 different donors. in compliance with the tenets of the Declaration of Helsinki and after obtaining the informed consent from the donorâs next of kin. The average post-mortem time of the 16 samples was 22 hours 40 min (ranging from 6 to 26 hours). Briefly, an incision was performed on the sclera and the scleral tissue was cut and removed leaving the rest of the eye bulb intact. The RPE/choroid was then removed as an intact sheet, revealing the neural retina. The latter was gently pulled away from the underlying vitreous body that remained intact. The dissected retinal tissue was visually inspected to exclude any cross contamination with the pigmented RPE/choroid and was immediately submerged in RNA Stabilisation Reagent (RNA later; Qiagen) to stabilise RNA and preserve gene expression profiles. More details in Parekh, M. et al. A simplified technique for in situ excision of cornea and evisceration of retinal tissue from human ocular globe. Journal of visualized experiments : JoVE, e3765, doi:10.3791/3765 (2012). mirneasy QIAGEN TruSeq Small RNA library preparation (Illumina)

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: female

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 1


E-MTAB-3792:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Telethon Institute of Genetics and Medicine, TIGEM

characteristic: INSDC center name

text: public

text: E-MTAB-3792:Sample 10

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

characteristic: organism part

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 10


E-MTAB-3792:Sample 11

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-3792:Sample 11

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: retina

text: Homo sapiens

text: female

text: frozen specimen

text: Sample 11

characteristic: title


E-MTAB-3792:Sample 12

text: public

characteristic: SRA accession

text: E-MTAB-3792:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Non visually impaired donor

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: female

text: frozen specimen

text: Sample 12


E-MTAB-3792:Sample 13

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3792:Sample 13

characteristic: age

text: ArrayExpress

text: Non visually impaired donor

characteristic: clinical history

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: female

characteristic: sex

text: frozen specimen

text: Sample 13


E-MTAB-3792:Sample 14

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3792:Sample 14

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 14


E-MTAB-3792:Sample 15

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3792:Sample 15

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

characteristic: organism part

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 15


E-MTAB-3792:Sample 16

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3792:Sample 16

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: retina

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 16

characteristic: title


E-MTAB-3792:Sample 17

text: public

text: E-MTAB-3792:Sample 17

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Non visually impaired donor

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Retinal Pigmented Epithelium/Choriod

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 17


E-MTAB-3792:Sample 18

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3792:Sample 18

characteristic: age

text: ArrayExpress

text: Non visually impaired donor

characteristic: clinical history

text: human

text: Homo sapiens

text: Homo sapiens

text: Retinal Pigmented Epithelium/Choriod

text: Homo sapiens

text: male

characteristic: sex

text: frozen specimen

text: Sample 18


E-MTAB-3792:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3792:Sample 2

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 2


E-MTAB-3792:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-3792:Sample 3

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

characteristic: organism part

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 3


E-MTAB-3792:Sample 6

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-3792:Sample 6

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: retina

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 6

characteristic: title


E-MTAB-3792:Sample 7

text: public

text: E-MTAB-3792:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Non visually impaired donor

text: human

characteristic: common name

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: male

text: frozen specimen

text: Sample 7


E-MTAB-3792:Sample 8

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-3792:Sample 8

characteristic: age

text: ArrayExpress

text: Non visually impaired donor

characteristic: clinical history

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: female

characteristic: sex

text: frozen specimen

text: Sample 8


E-MTAB-3792:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-3792:Sample 9

text: ArrayExpress

text: Non visually impaired donor

text: human

text: Homo sapiens

text: Homo sapiens

text: retina

text: Homo sapiens

text: male

text: frozen specimen

characteristic: specimen with known storage state

text: Sample 9


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: NF54-PiggyBac Mutant

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: NF54-PiggyBac Mutant

characteristic: strain


text: Plasmodium falciparum

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum


name: E-MTAB-3788:2102Ep ORF1 shRNA (sh1083) replicate 1

characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Institute for Research on Cancer and Aging of Nice (IRCAN) INSERM U1081 - CNRS UMR 7284 University of Nice - Sophia-Antipolis

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: shRNA through pLKO.1-based lentiviral transduction and puromycin selection for 1 week. Whole cell total RNA was purified by a double TRI Reagent extraction (Molecular Research Center), DNase-treatment (TURBO DNAse, Life technologies) and a final clean up using the RNeasy mini extraction kit (Qiagen). Poly(A)+ RNA was purified from total RNA using oligo(dT) magnetic beads. Poly(A)+ RNA was isolated from the total RNA samples and fragmented with ultrasound (1 pulse of 15 sec at 4Â°C). First-strand cDNA synthesis was primed with random hexamers. Then, the Illumina TruSeq sequencing adapters were ligated to the 5' and 3' ends of the cDNA. The cDNA was finally amplified with PCR using a proof reading enzyme and between 12 and 14 cycles. The cDNA was purified using the Agencourt AMPure XP kit (Beckman Coulter Genomics). For Illumina sequencing, the cDNA samples were pooled in approximately equimolar amounts. The cDNA pool was size fractionated in the size range of 350-550 bp on a preparative agarose gel.

characteristic: description

text: embryonal carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1083)

characteristic: rna interference

text: Homo sapiens

text: male

text: 2102Ep ORF1 shRNA (sh1083) replicate 1

characteristic: title


name: E-MTAB-3788:2102Ep ORF1 shRNA (sh1083) replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Research on Cancer and Aging of Nice (IRCAN) INSERM U1081 - CNRS UMR 7284 University of Nice - Sophia-Antipolis

text: public

text: ArrayExpress

text: human

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1083)

text: Homo sapiens

text: male

characteristic: sex

text: 2102Ep ORF1 shRNA (sh1083) replicate 2


name: E-MTAB-3788:2102Ep ORF1 shRNA (sh1083) replicate 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1083)

text: Homo sapiens

text: male

text: 2102Ep ORF1 shRNA (sh1083) replicate 3


name: E-MTAB-3788:2102Ep ORF1 shRNA (sh1085) replicate 1

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1085)

text: Homo sapiens

text: male

text: 2102Ep ORF1 shRNA (sh1085) replicate 1


name: E-MTAB-3788:2102Ep ORF1 shRNA (sh1085) replicate 2

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: embryonal carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ORF1 shRNA (sh1085)

text: Homo sapiens

text: male

text: 2102Ep ORF1 shRNA (sh1085) replicate 2


name: E-MTAB-3788:2102Ep ORF1 shRNA (sh1085) replicate 3

text: public

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1085)

text: Homo sapiens

text: male

text: 2102Ep ORF1 shRNA (sh1085) replicate 3


name: E-MTAB-3788:2102Ep scramble shRNA replicate 1

text: public

text: ArrayExpress

text: human

text: embryonal carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: scramble shRNA (sh960)

characteristic: rna interference

text: Homo sapiens

text: male

text: 2102Ep scramble shRNA replicate 1

characteristic: title


name: E-MTAB-3788:2102Ep scramble shRNA replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: scramble shRNA (sh960)

text: Homo sapiens

text: male

text: 2102Ep scramble shRNA replicate 2


name: E-MTAB-3788:2102Ep scramble shRNA replicate 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: scramble shRNA (sh960)

text: Homo sapiens

text: male

characteristic: sex

text: 2102Ep scramble shRNA replicate 3


name: E-MTAB-3788:2102Ep untreated replicate 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: Protocols: untreated Whole cell total RNA was purified by a double TRI Reagent extraction (Molecular Research Center), DNase-treatment (TURBO DNAse, Life technologies) and a final clean up using the RNeasy mini extraction kit (Qiagen). Poly(A)+ RNA was purified from total RNA using oligo(dT) magnetic beads. Poly(A)+ RNA was isolated from the total RNA samples and fragmented with ultrasound (1 pulse of 15 sec at 4Â°C). First-strand cDNA synthesis was primed with random hexamers. Then, the Illumina TruSeq sequencing adapters were ligated to the 5' and 3' ends of the cDNA. The cDNA was finally amplified with PCR using a proof reading enzyme and between 12 and 14 cycles. The cDNA was purified using the Agencourt AMPure XP kit (Beckman Coulter Genomics). For Illumina sequencing, the cDNA samples were pooled in approximately equimolar amounts. The cDNA pool was size fractionated in the size range of 350-550 bp on a preparative agarose gel.

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: untreated

text: Homo sapiens

text: male

text: 2102Ep untreated replicate 1


name: E-MTAB-3788:2102Ep untreated replicate 2

characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: embryonal carcinoma

text: Homo sapiens

text: Homo sapiens

text: untreated

text: Homo sapiens

text: male

text: 2102Ep untreated replicate 2


name: E-MTAB-3788:MCF-7 ORF1 shRNA (sh1083) replicate 1

text: public

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: breast adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ORF1 shRNA (sh1083)

text: Homo sapiens

text: female

text: MCF-7 ORF1 shRNA (sh1083) replicate 1


name: E-MTAB-3788:MCF-7 ORF1 shRNA (sh1083) replicate 2

text: public

text: ArrayExpress

text: human

characteristic: description

text: breast adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1083)

characteristic: rna interference

text: Homo sapiens

text: female

text: MCF-7 ORF1 shRNA (sh1083) replicate 2


name: E-MTAB-3788:MCF-7 ORF1 shRNA (sh1083) replicate 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1083)

text: Homo sapiens

text: female

text: MCF-7 ORF1 shRNA (sh1083) replicate 3

characteristic: title


name: E-MTAB-3788:MCF-7 ORF1 shRNA (sh1085) replicate 1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: ORF1 shRNA (sh1085)

text: Homo sapiens

text: female

text: MCF-7 ORF1 shRNA (sh1085) replicate 1