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characteristic: INSDC status

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #5, 11 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

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characteristic: host taxid

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text: 16S rRNA

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tag: attribute

text: CGS-GL

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #5, 18 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: host-associated

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characteristic: geographic location (latitude)

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text: Functional characterization of mucosal IgA-targeted members of the gut microbiota of undernourished Malawian children

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characteristic: INSDC status

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #1, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

text: host-associated

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text: CGS-GL

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #2, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #2, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

text: host-associated

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #3, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #3, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

text: host-associated

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text: house mouse

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #4, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #4, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

text: host-associated

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text: house mouse

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #5, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

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characteristic: environment (biome)

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #5, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a nutritionally replete BK chow diet. Please see our paper for additional details.

text: host-associated

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #1, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

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characteristic: environment (biome)

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characteristic: INSDC status

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #11, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

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text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #11, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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characteristic: geographic location (latitude)

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text: public

characteristic: INSDC status

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #12, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

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characteristic: host taxid

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text: male

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text: 16S rRNA

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text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #12, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: host-associated

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characteristic: geographic location (latitude)

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text: mimarks-survey

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #13, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

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text: male

text: 16S rRNA

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characteristic: title


text: CGS-GL

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characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #13, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: host-associated

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characteristic: geographic location (latitude)

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #14, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

text: Functional characterization of mucosal IgA-targeted members of the gut microbiota of undernourished Malawian children

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #14, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

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text: mouse

characteristic: host common name

text: mimarks-survey

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text: 16S rRNA

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characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #15, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

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text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #15, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

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characteristic: project name

text: Mus musculus

text: pyrosequencing

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characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #2, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: target gene

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #3, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

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text: mouse

characteristic: host common name

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text: mimarks-survey

text: Mus musculus

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text: pyrosequencing

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characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #4, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #4, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

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characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

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text: mouse

characteristic: host common name

text: mimarks-survey

text: Mus musculus

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characteristic: sequencing method

text: male

text: 16S rRNA

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characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #5, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #5, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #6, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: target gene

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #6, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #7, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #7, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #8, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #8, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #9, 11 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: target gene

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment B: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from a humanized mouse #9, 18 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Functional characterization of mucosal IgA-targeted members of the gut microbiota of undernourished Malawian children

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #11, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the Input fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Unfractionated FACS sample

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #11, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the IgAneg fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: FACS sample with low IgA binding

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #11, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the IgApos fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: FACS sample with high IgA binding

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #12, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the Input fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Unfractionated FACS sample

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #12, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the IgAneg fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: FACS sample with low IgA binding

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #12, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the IgApos fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: FACS sample with high IgA binding

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #14, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the Input fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Unfractionated FACS sample

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target gene


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #14, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the IgAneg fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: FACS sample with low IgA binding

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #14, 42 days after colonization with the fecal microbiota of healthy co-twin 57B. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was generated by collecting the IgApos fraction via fluorescence-assisted cytometric sorting. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: FACS sample with high IgA binding

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #12, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the Input fraction from the sample. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Unfractionated FACS sample

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #12, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the IgAneg fraction from the sample. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: FACS sample with low IgA binding

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #12, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the IgApos fraction from the sample. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: FACS sample with high IgA binding

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #14, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the Input fraction from the sample. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Unfractionated FACS sample

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target gene


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #14, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the IgAneg fraction from the sample. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: FACS sample with low IgA binding

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #14, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the IgApos fraction from the sample. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: FACS sample with high IgA binding

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #15, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the Input fraction from the sample. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Unfractionated FACS sample

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Sort Day

characteristic: Submitter Id

text: house mouse

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #15, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the IgAneg fraction from the sample. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

text: Functional characterization of mucosal IgA-targeted members of the gut microbiota of undernourished Malawian children

characteristic: project name

text: FACS sample with low IgA binding

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment A: Mice humanized with fecal microbiota from twins discordant for kwashiorkor. This sample was obtained from humanized mouse #15, 42 days after colonization with the fecal microbiota of the co-twin with kwashiorkor 57A. The mouse was fed a macro- and micro- nutrient deplete Malawi diet. This sample was fractionated by sorting the IgApos fraction from the sample. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: FACS sample with high IgA binding

characteristic: sample collection device or method

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #1, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target gene


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #10, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #2, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #3, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

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text: mimarks-survey

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text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

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text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #4, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

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text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

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text: CGS-GL

text: public

characteristic: collection date

text: house mouse

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #5, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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text: USA

characteristic: geographic location (latitude)

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #6, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #7, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #8, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

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characteristic: collection date

text: house mouse

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #9, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #1, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

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text: male

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text: public

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text: house mouse

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #2, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #3, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #7, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #8, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

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text: Mus musculus

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text: male

characteristic: sex

text: 16S rRNA

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text: CGS-GL

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characteristic: collection date

text: house mouse

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #11, 13 days after colonization with equal numbers of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: geographic location (latitude)

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text: mouse

characteristic: host common name

text: mimarks-survey

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characteristic: organism

text: Functional characterization of mucosal IgA-targeted members of the gut microbiota of undernourished Malawian children

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text: pyrosequencing

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text: 16S rRNA

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characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #12, 13 days after colonization with equal numbers of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

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characteristic: sequencing method

text: male

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text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #13, 13 days after colonization with equal numbers of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: INSDC status

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characteristic: Submitter Id

text: house mouse

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #14, 13 days after colonization with equal numbers of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

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text: CGS-GL

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text: house mouse

characteristic: common name

text: Experiment C: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #15, 13 days after colonization with equal numbers of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #1, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

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text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #2, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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text: public

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characteristic: SRA accession

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text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #3, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

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text: public

characteristic: collection date

text: house mouse

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text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #4, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: INSDC status

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text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from HMIgA+ mouse #5, 13 days after colonization with IgA pos microbes from HM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

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characteristic: project name

text: Mus musculus

text: pyrosequencing

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text: 16S rRNA

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text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from CsAm/KMIgA+ mouse #1, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KM mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: environment (biome)

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text: host-associated

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characteristic: geographic location (latitude)

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from CsAm/KMIgA+ mouse #2, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KM mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

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text: male

characteristic: sex

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text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from CsAm/KMIgA+ mouse #3, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KM mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: environment (biome)

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text: host-associated

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from CsAm/KMIgA+ mouse #5, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KM mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

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text: pyrosequencing

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characteristic: collection date

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text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #11, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #13, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

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text: pyrosequencing

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text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #14, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from KMIgA+ mouse #15, 13 days after colonization with IgA pos microbes from KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

text: Functional characterization of mucosal IgA-targeted members of the gut microbiota of undernourished Malawian children

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text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

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characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #11, 13 days after colonization with and equal mixture of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

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characteristic: geographic location (latitude)

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text: mimarks-survey

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #12, 13 days after colonization with and equal mixture of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

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text: mimarks-survey

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text: house mouse

characteristic: common name

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #13, 13 days after colonization with and equal mixture of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #14, 13 days after colonization with and equal mixture of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target gene


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment E: Colonization of mice with IgA pos microbes from humanized mice. This fecal sample was obtained from MixIgA+ mouse #15, 13 days after colonization with and equal mixture of IgA pos microbes from HM and KM mice. The mouse was fed the Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment F: Testing protective effects of C. scindens and A. muciniphila. This fecal sample was obtained from CsAm/KMF2IgA+ mouse #10, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KMIgA+ mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment F: Testing protective effects of C. scindens and A. muciniphila. This fecal sample was obtained from CsAm/KMF2IgA+ mouse #11, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KMIgA+ mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment F: Testing protective effects of C. scindens and A. muciniphila. This fecal sample was obtained from CsAm/KMF2IgA+ mouse #12, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KMIgA+ mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

characteristic: host taxid

text: mimarks-survey

text: Mus musculus

text: Mus musculus

text: pyrosequencing

characteristic: sequencing method

text: male

text: 16S rRNA

characteristic: title


text: CGS-GL

text: public

characteristic: collection date

text: house mouse

characteristic: common name

text: Experiment F: Testing protective effects of C. scindens and A. muciniphila. This fecal sample was obtained from CsAm/KMF2IgA+ mouse #13, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KMIgA+ mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse

characteristic: host common name

text: mimarks-survey

characteristic: investigation type

text: Mus musculus

text: Mus musculus

text: pyrosequencing

text: male

characteristic: sex

text: 16S rRNA

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CGS-GL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Experiment F: Testing protective effects of C. scindens and A. muciniphila. This fecal sample was obtained from CsAm/KMF2IgA+ mouse #14, who received live Clostridium scindens and Akkermansia muciniphila 24h before colonization with with IgA pos microbes from KMIgA+ mice. This sample was obtained 13 days after colonization. The mouse was fed the Malawi diet. Please see our paper for additional details.

text: host-associated

text: USA

text: mouse

text: mimarks-survey

text: Mus musculus

characteristic: organism

characteristic: project name

text: Mus musculus

text: pyrosequencing

text: male

text: 16S rRNA

characteristic: target gene