text: Hatching:Long-pec- ZFS:0000033

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 80 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTAACTC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph80

text: Danio rerio

text: mixed


status: PUBLIC

text: Hatching:Long-pec- ZFS:0000033

tag: attribute

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 80 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATTCATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph80

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Hatching:Long-pec- ZFS:0000033

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 80 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCTTGGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph80

text: Danio rerio

text: mixed


text: University of Manchester

text: public

tag: Namespace:University of Manchester

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Palatal shelves dissected from E13.5/E14.5 mice were cross-linked with 1% formaldehyde for 20 minutes. After reverse cross-link and protein digestion with Proteinase K (Roche), DNA was purified using Qiaquick, PCR purification kit (Qiagen) following the manufacturer instructions. Chromatin was prepared by homogenising the tissue pellet in PBS using an Ultra-Turrax Homogeniser, after which the palatal cells were incubated in PIPES buffer according to the Upstate ChIP assay protocol (Merck Millipore). Chromatin was sonicated using a Sonics Vibracell with seven 10 second pulses set to an amplitude of 40. Chromatin was initially prewashed with Protein A-Agarose beads (SC-2001; Santa Cruz,) and subsequently incubated with 2 μg of α isoform-specific p63 antibody (H129; Santa Cruz) overnight at 4 degree C. Antibody-bound chromatin was recovered using protein A-agarose beads (Santa Cruz).

characteristic: description

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: palatal shelves

characteristic: organism part

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Linkoping University, Linkoping, Sewden

characteristic: INSDC center name

text: public

tag: Namespace:Linkoping University, Linkoping, Sewden

text: ArrayExpress

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

text: Protocols: hmeDIP-Seq was performed as previously described. Briefly, DNA was sonicated to yield fragmented DNA with a modal size of 150 bp. Following end-repair and A-tailing, Illumina TruSeq adaptors were added to the resulting DNA according to the manufacturer’s instructions. The adaptor ligated DNA was then subjected to hmeDIP as outlined in associated manuscript. The resulting INPUT and hMeDIP samples were PCR amplified for fifteen cycles using single-end Illumina PCR primers. Finally, libraries were size selected by agarose gel electrophoresis. All DNA purification steps were carried out using Agencourt AMPure Beads (Beckman Coulter), and DNA quality, quantity and size was tested after every step on an Agilent Bioanalyser using High Sensitivity DNA chips (Agilent). Samples were subjected to single-end sequencing on the Illumina GAIIx platform. Sequencing was carried out at the Genomics Core, Albert Einstein College of Medicine, New York.

text: cultured cell

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: female

characteristic: sex

type: has member


text: Linkoping University, Linkoping, Sewden

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: common name

text: tissue

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: female


text: Pharyngula : Prim 5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for bace2, allele hu3332,ZMP phenotype 170 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph170

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for bace2, allele hu3332,ZMP phenotype 170 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph170

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for bace2, allele hu3332,ZMP phenotype 170 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACCACCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph170

text: Danio rerio

text: mixed


text: Larval:Protruding mouth - ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for bace2, allele hu3332, ZMP phenotype 172 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph172

text: Danio rerio

text: mixed


text: Larval:Protruding mouth - ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for bace2, allele hu3332, ZMP phenotype 172 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph172

text: Danio rerio

text: mixed


text: Larval:Protruding mouth - ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zmp_ph172_non_phenotypic_1_10-sc-2198637

text: zebrafish

text: Danio rerio

characteristic: organism

text: Danio rerio

text: mixed


text: Larval:Protruding mouth - ZFS:0000035

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zmp_ph172_non_phenotypic_1_11-sc-2198638

text: zebrafish

text: Danio rerio

text: Danio rerio

text: mixed


text: Larval:Protruding mouth - ZFS:0000035

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zmp_ph172_non_phenotypic_1_12-sc-2198639

text: zebrafish

text: Danio rerio

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGATGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTTGTCGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGATTAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATAGAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTGTGTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAATCCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GACCTTAG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCCTGTTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCACTGTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTAACTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATTCATC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 6 - ZFS:0000038

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo for ffr, allele p9emcf, clutch 1 treated with 30 mg/l PTU plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCTTGGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TATGTGGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTACTCGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

characteristic: sample description

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGAACAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCATCCTA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCTGATA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

characteristic: sample description

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGACGGA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTGAAGA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTCTTCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGTTCCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGAAGCCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACCACCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCGTGAA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGTGAGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATCTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

characteristic: sample description

text: Danio rerio

text: mixed


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTGTCCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed

characteristic: strain


text: Pharyngula : Prim 5 - ZFS:0000029

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo at 24hpf for mitfa, allele w2, ZMP phenotype 163 clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GACGGATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/sanger/Zebrafish_Zmpsearch/zmp_ph163

text: Danio rerio

text: mixed


characteristic: External Id

text: Shanghai Jiao Tong University

characteristic: INSDC center name

text: public

tag: Namespace:Shanghai Jiao Tong University

text: ArrayExpress

characteristic: broker name

text: fission yeast

text: Protocols: We used a wild-type Schizosaccharomyces pombe 972 h- strain for all experiments. The strain was exponentially grown at 32 degree C in rich medium supplemented with glucose, adenine, histidine, lecucine and uracil. Cells were harvested and resuspended with pre-cooled lysis buffer (10mM EDTA, 10 mM Tris-HCl pH 8.0 and 50 mM NaOAc), which were further treated with mechanical pulverization. The cell material was stored at -80 degree C. Total RNA was extracted with the TRIZOL reagent according to the manufacturer's instructions (Invitrogen, Carlsbad, CA) and isolated RNA was quantified by bioanalyzer 2100. The CAGE library was prepared as the method described (Valen et al., Genome Res 2009) with some modifications to work with Illumina GA II sequencer. Briefly, cDNA synthesis was conducted by using 50ug total RNA and Superscript II revese transcriptase (Life Technologies). The cap selected cDNA/RNA hybrids were treated with RNase ONE Ribonuclease (promega) and purified cDNA was ligated with 5 prime end linker containing Mme I site. After 2nd strand synthesis, dsDNA fragments were digested with Mme I followed by the ligation with 3 prime end linker. The resulting CAGE tags were amplified by PCR, which was subject to deep sequencing.

characteristic: description

text: Normal

characteristic: growth condition

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: WT

characteristic: title


text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TATGTGGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTACTCGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGAACAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCATCCTA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCTGATA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGACGGA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTGAAGA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTCTTCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGTTCCA) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGAAGCCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACCACCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCGTGAA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGTGAGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATCTCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTGTCCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GACGGATT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGTCGTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GAGGATGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTTGTCGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGATTAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATAGAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTGTGTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCAATCCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GACCTTAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCCTGTTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCACTGTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCTAACTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATTCATC) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc39a14, allele u801, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GTCTTGGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (ACAGTGGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCTGTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGGAGGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCGAGCGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGCGATCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACAGGAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCCTCAAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTGGTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAGTCTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCCATTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCGAAGTG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAACGCTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTGGTATG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped homozygous mutant embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGAACTGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACTTCGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCTCACGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCAGGAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TAAGTTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCCAGTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped heterozygous embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGTATGCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

characteristic: ArrayExpress-Compound

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC center name

text: public

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCATTGAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole embryo

text: Danio rerio

text: mixed

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TGGCTCAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

characteristic: INSDC status

text: zebrafish

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TATGCCAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TCAGATTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TACTAGTC) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Manganese Chloride

text: Larval:Day 5 - ZFS:0000037

text: Whole embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single genotyped wild type embryo for slc30a10, allele u800, clutch 1 treated with 20 micromolar manganese chloride plus ERCC spike mix 1 (Ambion). A 8 base indexing sequence (TTCAGCTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed

characteristic: strain


text: MMRI

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: title


BMRX

text: BGI SHENZHEN

characteristic: INSDC first public

text: public

text: T. Kutchan

text: BMRX

tag: Namespace:BGI SHENZHEN

text: opium poppy

characteristic: common name

text: Munich variety

characteristic: description

text: Papaver somniferum

text: leaves

characteristic: plant body site

text: T. Kutchan

text: Papaver somniferum

text: T. Kutchan 6173586 (MO)

text: leaf

characteristic: tissue type

text: OneKP Legume


SUFP

text: BGI SHENZHEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: T. Kutchan

text: SUFP

text: opium poppy

text: Munich variety

text: Papaver somniferum

characteristic: organism

text: stems

text: T. Kutchan

text: Papaver somniferum

text: T. Kutchan 6173586 (MO)

text: stem

text: OneKP Legume


MIKW

characteristic: ENA-CHECKLIST

text: BGI SHENZHEN

text: public

text: T. Kutchan

characteristic: SRA accession

text: MIKW

text: opium poppy

text: Munich variety

text: Papaver somniferum

text: roots

text: T. Kutchan

text: Papaver somniferum

text: T. Kutchan 6173586 (MO)

text: root

text: OneKP Legume


FPYZ

characteristic: ENA-FIRST-PUBLIC

text: BGI SHENZHEN

text: public

text: T. Kutchan

text: FPYZ

text: opium poppy

text: Munich variety

text: Papaver somniferum

text: flower buds

text: T. Kutchan

text: Papaver somniferum

text: T. Kutchan 6173586 (MO)

text: flower bud

text: OneKP Legume


KKCW

characteristic: ENA-LAST-UPDATE

text: BGI SHENZHEN

text: public

text: T. Kutchan

text: KKCW

text: opium poppy

text: Munich variety

text: Papaver somniferum

text: fruits

text: T. Kutchan

text: Papaver somniferum

text: T. Kutchan 6173586 (MO)

text: developing fruit

text: OneKP Legume


GEHT

characteristic: External Id

text: BGI SHENZHEN

text: public

text: BGI

text: GEHT

text: honey locust

text: Gleditsia triacanthos

text: flowers and leaves

text: S. Cannon

text: Gleditsia triacanthos

text: Cannon 0002

text: leaves and young flowers

text: OneKP Legume


QZXQ

text: BGI SHENZHEN

text: public

text: BGI

text: QZXQ

text: Kentucky coffee tree

text: Gymnocladus dioicus

text: flowers and leaves

text: S. Cannon

text: Gymnocladus dioicus

text: Cannon 0003

text: leaves and young flowers

text: OneKP Legume


CMFF

text: BGI SHENZHEN

text: public

text: BGI

text: CMFF

text: large-leaved lupine

text: Lupinus polyphyllus

text: flowers and leaves

text: S. Cannon

text: Lupinus polyphyllus

text: Cannon 0010

text: high alkaloid leaves and young flowers

text: OneKP Legume


TTRG

text: BGI SHENZHEN

text: public

text: M. Nelson

text: TTRG

text: narrow-leaved blue lupine

text: Lupinus angustifolius L.

text: Lupinus angustifolius

text: leaves

text: M. Nelson

text: Lupinus angustifolius

text: Nelson & Liu: 83A:476 (UWA)

text: leaves

text: OneKP Legume


DSVQ

text: BGI SHENZHEN

text: public

text: BGI

text: DSVQ

text: German evening primrose

text: MTJ-id# 659 / strain suaveolens Grado (seeds from S. Greiner)

text: Oenothera biennis

text: young leaves

text: M. Johnson

text: Oenothera biennis

text: M. Johnson 659

text: young true leaves from seedlings

text: OneKP Oenothera


EXGW

text: BGI SHENZHEN

text: public

text: M. Johnson

text: EXGW

text: German evening primrose

text: MTJ-id# 378 / UTM: 18T 0380003 4709110, Tompkins Co NY, USA

text: Oenothera biennis

text: young leaves

text: M. Johnson

text: Oenothera biennis

text: M. Johnson 378

text: young true leaves from seedlings

text: OneKP Oenothera


FDBS

text: BGI SHENZHEN

text: public

text: M. Johnson

text: FDBS

text: German evening primrose

text: MTJ-id# 442 / Sauroren park, West Toronto, Ontario Canada

text: Oenothera biennis

text: young leaves

text: M. Johnson

text: Oenothera biennis

text: M. Johnson 442

text: young true leaves from seedlings

text: OneKP Oenothera


MLUJ

text: BGI SHENZHEN

text: public

text: M. Johnson

text: MLUJ

text: German evening primrose

text: MTJ-id# 658 / biennis-2; strain Lawrenceville 3 (seeds from S. Greiner)

text: Oenothera biennis

text: young leaves

text: M. Johnson

text: Oenothera biennis

text: M. Johnson 658

text: young true leaves from seedlings

text: OneKP Oenothera


DWAP

text: BGI SHENZHEN

text: public

text: BGI

text: DWAP

text: German evening primrose

text: MTJ-id# 676 / strain chicaginensis de Vries, Illinois USA (obtained from Ornamental Plant Germplasm Center)

text: Oenothera biennis

text: young leaves

text: M. Johnson

text: Oenothera biennis

text: M. Johnson 676

text: young true leaves from seedlings

text: OneKP Oenothera


text: public

tag: Namespace:Institut de recherche en immunologie et en cancerologie, Universite de Montreal

text: ArrayExpress

characteristic: broker name

text: human

text: THP-1 Infected with H37Rv for 1h, input Protocols: THP-1 cells (ATCC TIB-202) were cultured in RMPI-1640 with L-glutamine and 25mM HEPES (Wisent) with 10% FBS. H37Rv (ATCC 25618) were cultured in Middlebrook 7H9 (Difco) with 0.05% Tween-80, 0.1% Glycerol and 10% ADC enrichment (BD Biosciences). The libraries were then prepared using the Trueseq library kit from Illumina and according to the manufacture’s recommendations.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: Institut de recherche en immunologie et en cancerologie, Universite de Montreal

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: THP-1 Infected with H37Rv for 24h, H3K4m1 ChIP Protocols: THP-1 cells (ATCC TIB-202) were cultured in RMPI-1640 with L-glutamine and 25mM HEPES (Wisent) with 10% FBS. H37Rv (ATCC 25618) were cultured in Middlebrook 7H9 (Difco) with 0.05% Tween-80, 0.1% Glycerol and 10% ADC enrichment (BD Biosciences). The libraries were then prepared using the Trueseq library kit from Illumina and according to the manufacture’s recommendations.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: THP-1 Infected with H37Rv for 24h, input Protocols: THP-1 cells (ATCC TIB-202) were cultured in RMPI-1640 with L-glutamine and 25mM HEPES (Wisent) with 10% FBS. H37Rv (ATCC 25618) were cultured in Middlebrook 7H9 (Difco) with 0.05% Tween-80, 0.1% Glycerol and 10% ADC enrichment (BD Biosciences). The libraries were then prepared using the Trueseq library kit from Illumina and according to the manufacture’s recommendations.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: public

text: ArrayExpress

text: human

text: THP-1 Infected with H37Rv for 1h, H3K4m1 ChIP Protocols: THP-1 cells (ATCC TIB-202) were cultured in RMPI-1640 with L-glutamine and 25mM HEPES (Wisent) with 10% FBS. H37Rv (ATCC 25618) were cultured in Middlebrook 7H9 (Difco) with 0.05% Tween-80, 0.1% Glycerol and 10% ADC enrichment (BD Biosciences). The libraries were then prepared using the Trueseq library kit from Illumina and according to the manufacture’s recommendations.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title