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text: 10.9 weeks

characteristic: ArrayExpress-Age

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tag: Namespace:Systems Biology Ireland, Conway Institute, University College Dublin

text: 24 hour

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text: Protocols: HEK293 cells were cultured in DMEM containing 10% FCS and Pen/strep. HEK293 cells were transfected with Control or REST RNA interfeerence using lipofectmain for 24 hours. Cells were exposed to normoxic (21% oxygen) or hypoxic (1% oxygen) pre-conditioned media for 24 hours after transfection. RNA was isolated using QIAgen QIAquick columns. For library construction the illumina TruSeq v2 mRNA kit was utilized after poly(A)+ RNA was enriched from total RNA samples. Libraries were visualized by Bioanalyzer (Agilent) using the High Sensitivity Chip. Libraries were quantified for pooling and sequencing using Kapa Biosystems qPCR quantitation kit.

characteristic: description

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characteristic: organism

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name: E-MTAB-2595:Anopheles gambie infected by onnv (replicate 1)

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characteristic: broker name

text: African malaria mosquito

text: Protocols: The Anopheles gambiae Ngousso strain was originally initiated with mosquitoes collected in Cameroon in January 2006, and belongs to the M molecular and Forest chromosomal forms (Harris C, Lambrechts L, Rousset F, Abate L, Nsango SE, Fontenille D, Morlais I, Cohuet A. (2010). Polymorphisms in Anopheles gambiae immune genes associated with natural resistance to Plasmodium falciparum. PloS Pathog 6, e1001112.). Mosquito were reared under standard conditions as previously described (Mitri C, Jacques JC, Thiery I, Riehle MM, Xu J, Bischoff E, Morlais I, Nsango SE, Vernick KD, Bourgouin C. (2009). Fine pathogen discrimination within the APL1 gene family protects Anopheles gambiae against human and rodent malaria species. PloS Pathog 5, e1000576. Mosquitoes were infected on an infectious bloodmeal containing physiologically natural viral titers O'Nyong-Nyong strain SG650 12 mosquitoes per pool, in each of two replicates, were collected 3 days after bloodmeal infection with ONN and homogenized in TriReagent (Sigma). Small RNAs fraction (<200 nt) were extracted using Nucleospin miRNA (Machery Nagel) using the Trizol protocol and submitted to Bioanalyser for quality assessment. Briefly, the 10- to 30-nt RNA fragments were purified from small RNA fraction on a 15% urea PAGE (Biorad). Small RNA library were prepared using TruSeq Small RNA Library reagents (Illumina).

characteristic: description

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype

text: o'nyong'nyong virus

characteristic: infect

text: Anopheles gambiae

text: Anopheles gambiae

text: infected

characteristic: phenotype

text: 3 days after bloodmeal

characteristic: sampling time

text: Anopheles gambiae

text: female

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state

text: Ngousso

characteristic: strain

characteristic: title


name: E-MTAB-2595:Anopheles gambie (replicate 2)

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institut Pasteur

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: African malaria mosquito

text: Protocols: The Anopheles gambiae Ngousso strain was originally initiated with mosquitoes collected in Cameroon in January 2006, and belongs to the M molecular and Forest chromosomal forms (Harris C, Lambrechts L, Rousset F, Abate L, Nsango SE, Fontenille D, Morlais I, Cohuet A. (2010). Polymorphisms in Anopheles gambiae immune genes associated with natural resistance to Plasmodium falciparum. PloS Pathog 6, e1001112.). Mosquito were reared under standard conditions as previously described (Mitri C, Jacques JC, Thiery I, Riehle MM, Xu J, Bischoff E, Morlais I, Nsango SE, Vernick KD, Bourgouin C. (2009). Fine pathogen discrimination within the APL1 gene family protects Anopheles gambiae against human and rodent malaria species. PloS Pathog 5, e1000576. Same as TREATMENT but uninfected 12 mosquitoes per pool, in each of two replicates, were collected 3 days after bloodmeal infection with ONN and homogenized in TriReagent (Sigma). Small RNAs fraction (<200 nt) were extracted using Nucleospin miRNA (Machery Nagel) using the Trizol protocol and submitted to Bioanalyser for quality assessment. Briefly, the 10- to 30-nt RNA fragments were purified from small RNA fraction on a 15% urea PAGE (Biorad). Small RNA library were prepared using TruSeq Small RNA Library reagents (Illumina).

text: adult

text: wild type

text: uninfected

text: Anopheles gambiae

text: Anopheles gambiae

text: uninfected

text: 3 days after bloodmeal

text: Anopheles gambiae

text: female

text: fresh specimen

text: Ngousso

text: Anopheles gambie (replicate 2)


name: E-MTAB-2595:Anopheles gambie infected by onnv (replicate 2)

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institut Pasteur

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: African malaria mosquito

characteristic: common name

characteristic: description

text: adult

text: wild type

text: o'nyong'nyong virus

text: Anopheles gambiae

characteristic: organism

text: Anopheles gambiae

text: infected

text: 3 days after bloodmeal

text: Anopheles gambiae

text: female

text: fresh specimen

text: Ngousso


name: E-MTAB-2595:Anopheles gambie (replicate 1)

text: Institut Pasteur

text: public

text: ArrayExpress

text: African malaria mosquito

text: adult

characteristic: developmental stage

text: wild type

characteristic: genotype

text: uninfected

characteristic: infect

text: Anopheles gambiae

text: Anopheles gambiae

text: uninfected

characteristic: phenotype

text: 3 days after bloodmeal

characteristic: sampling time

text: Anopheles gambiae

text: female

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state

text: Ngousso

text: Anopheles gambie (replicate 1)


text: WT

characteristic: ArrayExpress-Genotype

text: ovaries

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Danio rerio

characteristic: ArrayExpress-Species

text: AB

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: zebrafish

text: Danio rerio

text: Oocyte RNA fraction.

characteristic: sample description

text: Danio rerio

text: AB

characteristic: strain


text: ovaries

text: female

text: Danio rerio

text: AB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Oocyte RNA fraction.

text: Danio rerio

text: AB


text: buc

characteristic: ArrayExpress-Genotype

text: ovaries

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Danio rerio

text: AB

text: SC

text: public

text: zebrafish

text: Danio rerio

text: Oocyte RNA fraction.

text: Danio rerio

text: AB


characteristic: ENA-LAST-UPDATE

text: CRUK Manchester Institute

text: public

tag: Namespace:CRUK Manchester Institute

text: house mouse

text: Tumour from UVR exposed animal

characteristic: description

text: Mus musculus

text: Mus musculus

text: Braf mutant mouse

characteristic: title


characteristic: External Id

text: CRUK Manchester Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Tumour from UVR exposed, sunscreen protected animal

text: Mus musculus

text: Mus musculus

text: Braf mutant mouse


text: CRUK Manchester Institute

characteristic: INSDC last update

text: public

text: house mouse

text: Tumour from unexposed animal

text: Mus musculus

text: Mus musculus

text: Braf mutant mouse


characteristic: ENA-CHECKLIST

text: CRUK Manchester Institute

text: public

text: house mouse

text: Matched normal DNA

text: Mus musculus

text: Mus musculus

text: Braf mutant mouse


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Boehringer Ingelheim Pharma GmbH & Co. KG, Drug Metabolism and Pharmacokinetics

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: 0.9x10^11 vg of AAV6.2 vectors containing the murine Il13 cDNA were administered intratracheally to Balb/c mice (9-12 wk). As a control, AAV6.2 vectors containing non-coding “stuffer DNA” were used. To assess vector-mediated effects following AAV6.2 administration, expression in AAV-stuffer treated animals was further compared to mice treated with PBS. cDNA libraries were prepared using the TruSeqTM RNA Sample Preparation Kit (# RS-122-2002, Illumina), low throughput protocol according to Illumina’s instructions

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: Balb/c

characteristic: strain


text: Boehringer Ingelheim Pharma GmbH & Co. KG, Drug Metabolism and Pharmacokinetics

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: female

text: Balb/c


text: Danio rerio

characteristic: ArrayExpress-Species

text: mixed

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_3-sc-1972427

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (ATCACGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

characteristic: sample description

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 25Cyclop_05EtOH_24hpf_treated_4-sc-1972428

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

text: 25Cyclop_05EtOH_24hpf_treated_6-sc-1972429

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_7-sc-1972430

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_8-sc-1972431

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (ACAGTGGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_9-sc-1972432

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_10-sc-1972433

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_11-sc-1972434

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_treated_12-sc-1972435

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 25 micromolar cyclopamine in 05% v/v ethanol. A 8 base indexing sequence (GATCAGCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_1-sc-1972436

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_2-sc-1972437

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_3-sc-1972438

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_4-sc-1972439

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_5-sc-1972440

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_6-sc-1972441

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TTCTGTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_7-sc-1972442

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_8-sc-1972443

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TTGGAGGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_9-sc-1972444

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TCGAGCGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_10-sc-1972445

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_11-sc-1972446

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 25Cyclop_05EtOH_24hpf_control_12-sc-1972447

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 05% v/v ethanol.A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_1-sc-1972448

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TGCGATCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_2-sc-1972449

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_3-sc-1972450

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_4-sc-1972451

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TACAGGAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_5-sc-1972452

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TCCTCAAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_6-sc-1972453

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TGTGGTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_7-sc-1972454

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TAGTCTTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_8-sc-1972455

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TTCCATTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_9-sc-1972456

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TCGAAGTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_10-sc-1972457

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TAACGCTG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_11-sc-1972458

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TTGGTATG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_treated_12-sc-1972459

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 50 micromolar cyclopamine in 0.1% v/v ethanol. A 8 base indexing sequence (TGAACTGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_2-sc-1972460

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TACTTCGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_3-sc-1972461

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TCTCACGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_4-sc-1972462

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TCAGGAGG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_5-sc-1972463

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TAAGTTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_6-sc-1972464

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TCCAGTCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_7-sc-1972465

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TGTATGCG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_8-sc-1972466

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TCATTGAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_9-sc-1972467

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TGGCTCAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_10-sc-1972468

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TATGCCAG) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_11-sc-1972469

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TCAGATTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 50Cyclop_0_1EtOH_24hpf_control_12-sc-1972470

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.1% v/v ethanol.A 8 base indexing sequence (TACTAGTC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_1-sc-1972471

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_2-sc-1972472

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TATGTGGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_3-sc-1972473

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TTACTCGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_4-sc-1972474

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_5-sc-1972475

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_6-sc-1972476

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_8-sc-1972477

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_9-sc-1972478

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_10-sc-1972479

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_treated_11-sc-1972480

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 75 micromolar cyclopamine in 0.15% v/v ethanol. A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_1-sc-1972481

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TGCTGATA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_2-sc-1972482

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TAGACGGA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_3-sc-1972483

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TGTGAAGA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_4-sc-1972484

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TCTCTTCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_5-sc-1972485

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TTGTTCCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_6-sc-1972486

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TGAAGCCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_7-sc-1972487

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TACCACCA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_8-sc-1972488

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (TGCGTGAA) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_9-sc-1972489

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (GGTGAGTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_10-sc-1972490

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (GATCTCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_11-sc-1972491

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (GTGTCCTT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: 75Cyclop_0_15EtOH_24hpf_control_12-sc-1972492

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo treated with 0.15% v/v ethanol. A 8 base indexing sequence (GACGGATT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_1-sc-1972493

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo. A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_2-sc-1972494

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GGTCGTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_3-sc-1972495

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_5-sc-1972496

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_6-sc-1972497

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_7-sc-1972498

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_8-sc-1972499

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_9-sc-1972500

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_10-sc-1972501

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: Cyclop_EtOH_24hpf_untreated_11-sc-1972502

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single wild type 24hpf embryo (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT.

text: Danio rerio

text: mixed