text: Danio rerio

text: TL/AB

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SL6_09_E5-sc-2013-02-21T15:15:41Z-1513826

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB


status: PUBLIC

text: male

tag: attribute

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_GMJOL5309806-sc-2012-07-19T11:00:50Z-1376410

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Homo Sapien

text: SC

text: public

text: 2019STDY5279483-sc-2012-01-27T12:25:46Z-1340753

text: human

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Aarhus University, Department of Molecular Biology and Genetics

text: ArrayExpress

characteristic: broker name

text: pig

text: Protocols: Ten different tissues from two unrelated one year old Landrace boars were included in the study. Hence, total RNA was extracted from heart, spleen, liver, kidney, lung, musculus longissimus dorsi, occipital cortex, hypothalamus, frontal cortex, and cerebellum employing the mirVanaTM RNA extraction kit (Ambion) according to manufacturers protocol, yielding a total of 20 samples. RNA integrity was assessed by manual inspection of the individual RNA samples on a 2% agarose gel. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3 prime to 5 prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: description

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: liver

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex

characteristic: title

type: has member


text: Mus musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: akap9_e_rnaseq-sc-2012-02-06T13:08:16Z-1001779

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: SRA accession

text: 2042STDY5252438-sc-2012-03-13T13:18:29Z-1309710

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC_MUSPA5465652-sc-2013-02-14T11:56:10Z-1558304

text: house mouse

text: Mus musculus

text: Mus musculus


text: E10.5 (35 to 37 somites)

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

text: Mouse_Tll1_mut1-sc-2012-04-30T14:51:20Z-1407967

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: muant mouse embryo of allele Tll1tm1Dgr (MGI: 2449853) reference PMID: 10331975

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC_GCIGC5274933-sc-2012-01-23T14:02:43Z-1335177

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


characteristic: External Id

text: public

characteristic: INSDC status

tag: Namespace:Centro Nacional de Investigaciones Oncologicas (CNIO)

text: Patient

characteristic: biosourceprovider

text: ArrayExpress

characteristic: broker name

text: lymphocyte

characteristic: cell type

text: human

text: Protocols: DNA was extracted from cell lines or peripheral blood lymphocytes using standard methods Whole exome enrichment was performed according to Agilent's Sureselect Human All Exon Kit protocol

characteristic: description

text: breast carcinoma

characteristic: disease state

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: European Molecular Biology Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

tag: Namespace:European Molecular Biology Laboratory

text: ArrayExpress

text: fruit fly

text: Protocols: Isogenic (y1; cn bw1 sp1) embryos were cultured on standard Drosophila medium. Qiagen RNeasy Illumina mRNA-seq library construction protocol

text: L3 larvae

characteristic: developmental stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Drosophila melanogaster

text: y1; cn bw1 sp1


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

text: 3GMUS5291852-sc-2012-02-09T14:15:30Z-1354752

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: Homo Sapien

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: 2042STDY5277750-sc-2012-01-26T09:26:51Z-1338765

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Larval - day 5 ZFS:0000037

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_20_4_mutant-sc-2013-04-11T15:21:11Z-1610779

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 20 clutch 4. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph20

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: Homo sapiens

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: WB_2182_09_TotalR-sc-2012-05-23T10:41:23Z-1425518

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ZFOS_539D4-sc-2012-02-29T12:45:28Z-1372588

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Solanum lycopersicum

characteristic: ArrayExpress-Species

text: SC

text: public

text: tomato

text: Solanum lycopersicum

text: Solanum lycopersicum


characteristic: INSDC last update

text: public

tag: Namespace:National Bureau of Plant Genetic Resources, New Delhi, India

text: ArrayExpress

characteristic: broker name

text: sorghum

text: Protocols: Sorghum (Sorghum bicolor (L.) Moench) genotype drought tolerant and drought susceptible were grown at 28-32 degrees C day/night temperature with 12/12 h light/dark period in the phytotron glass house. Thirty days after sowing, drought stress was imposed by withholding the irrigation to one set of plants till the leaf relative water content reached to about 60-65%. Total RNA was isolated from the leaves using the TRIzol reagent (Invitrogen, USA), according to the manufacturer's protocol. The RNA quality was examined using gel electrophoresis (28S:18S > 1.5) and Bioanalyzer (Agilent 2100, RIN = 8.0). Small RNA sequencing libraries were prepared using Illumina Truseq small RNA Library preparation kit following manufacturer's protocol.

characteristic: description

text: 30 days old leaf

characteristic: developmental stage

text: drought stress

characteristic: environmental stress

text: drought susceptible

characteristic: genotype

text: Sorghum bicolor

text: Sorghum bicolor

text: leaf

characteristic: organism part

text: Sorghum bicolor

text: frozen specimen

characteristic: specimen with known storage state

characteristic: title


text: Homo Sapien

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: 2019STDY5279466-sc-2012-01-27T12:25:33Z-1340736

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SC_GMJOL5309928-sc-2012-07-20T11:56:13Z-1376482

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC last update

text: public

text: SC_GCIGC5375928-sc-2012-08-02T07:46:29Z-1457613

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: SC

text: public

text: CH73_154C18-sc-2011-10-27T10:51:27Z-1291923

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Saccharomyces cerevisiae

text: SC

text: public

text: 2014STDY5370473-sc-2012-09-24T16:39:42Z-1450398

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Danio rerio

text: SC

text: public

text: ZFOS_1147E11-sc-2013-05-28T14:23:18Z-1634011

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Mus musculus

text: SC

text: public

text: PDP5014035-sc-2012-05-08T10:05:46Z-1027886

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: CH1073_303C10-sc-2011-10-27T10:34:17Z-1290004

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus Musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: mES_lif_s1_cell63-sc-2013-07-11T08:57:23Z-1661160

text: house mouse

text: Mus musculus

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: ERIBA, RuG , UMC Groningen

text: public

tag: Namespace:ERIBA, RuG , UMC Groningen

text: 6 week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Protocols: Animals were grown in animal facility RNA was extracted with standard Invitrogen Trizol kit Depletion of rRNA using Ribo-minus enriched paired-end libraries for SOLiD sequencer were constructed according to Applied Biosystems protocol

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease state

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

characteristic: organism part

text: Rattus norvegicus

text: frozen specimen

characteristic: specimen with known storage state

text: BN-Lx/Cub

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Aarhus University, Department of Molecular Biology and Genetics

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: pig

characteristic: common name

text: Protocols: Ten different tissues from two unrelated one year old Landrace boars were included in the study. Hence, total RNA was extracted from heart, spleen, liver, kidney, lung, musculus longissimus dorsi, occipital cortex, hypothalamus, frontal cortex, and cerebellum employing the mirVanaTM RNA extraction kit (Ambion) according to manufacturers protocol, yielding a total of 20 samples. RNA integrity was assessed by manual inspection of the individual RNA samples on a 2% agarose gel. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3 prime to 5 prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: individual

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: liver

text: Sus scrofa

text: male

characteristic: sex

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: sap102_3_rnaseq-sc-2012-02-06T13:06:18Z-1001674

text: house mouse

text: Mus musculus

text: Mus musculus


text: Streptococcus pneumoniae

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

text: SC

text: public

text: 2042STDY5251906-sc-2012-03-08T09:10:30Z-1309214

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: CH211_122J19__-sc-2012-02-29T12:11:38Z-1371832

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Mus musculus

characteristic: External Id

text: SC

text: public

text: 2042STDY5260867-sc-2011-12-15T14:32:29Z-1319328

text: house mouse

text: Mus musculus

text: Mus musculus


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Mus Musculus

text: SC

text: public

text: mES_i2m_s1_cell79-sc-2013-06-06T21:59:18Z-1643393

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: Mycoplasma hyopneumoniae

text: MP 73/94

text: SC

text: public

text: MP_73_94-sc-2011-11-10T09:57:42Z-1300428

text: Mycoplasma hyopneumoniae

characteristic: organism

text: Mycoplasma hyopneumoniae

text: MP 73/94

characteristic: strain


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: BCCS

text: public

text: human

text: characteristics = N6 - lymphoblastoid cell line generated from a normal control (Liu, J., Zhang, Z., Bando, M., Itoh, T., Deardorff, M.A., Clark, D., Kaur, M., Tandy, S., Kondoh, T., Rappaport, E., Spinner, N.B., Vega, H., Jackson, L.G., Shirahige, K., and Krantz, I.D. 2009. Transcriptional dysregulation in NIPBL and cohesin mutant human cells. PLoS Biol 7(5): e1000119.) characteristics = Chromatin immunoprecipitation for NIPBL growth_protocol = Lymphoblastoid cell lines derived from controls and Cornelia de Lange syndrome patients (Figure 5B) were obtained from Ian Krantz (The Children�s Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America) and cultured in RPMI medium supplemented with 0.2mM L-glutamine, 100 units per ml penicillin, 100 mg per ml streptomycin, 20% FCS. description = Polyclonal rabbit anti-NIPBL antibody raised against residues 2598-2825 of the X. laevis Scc2-1B and purified using the epitope used for immunization (133M, gift from Koichi Tanaka and Kim Nasmyth) was used for ChIP as described in (Wendt, K.S., Yoshida, K., Itoh, T., Bando, M., Koch, B., Schirghuber, E., Tsutsumi, S., Nagae, G., Ishihara, K., Mishiro, T., Yahata, K., Imamoto, F., Aburatani, H., Nakao, M., Imamoto, N., Maeshima, K., Shirahige, K., and Peters, J.M. 2008. Cohesin mediates transcriptional insulation by CCCTC-binding factor. Nature 451(7180): 796-801.).

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Normal Control 2

characteristic: title


text: Anopheles gambiae

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: SRA-Webin

text: ISB-USA

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RAD-seq reduced-genome sequencing of yeast strain for phylogenetic analysis


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC_GMJOL5309961-sc-2012-07-20T12:41:41Z-1376546

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Mus Musculus

text: SC

text: public

characteristic: INSDC status

text: 2042STDY5252397-sc-2011-11-30T14:53:16Z-1309630

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: Human

text: Promega

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Homo_sapiens-sc-2013-04-03T15:19:10Z-1607068

text: human

characteristic: common name

text: Homo sapiens

text: genomic DNA

characteristic: sample description

text: Homo sapiens

text: Promega


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252407-sc-2011-11-30T14:53:32Z-1309650

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_07_C1-sc-2013-02-21T15:11:51Z-1513600

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB

characteristic: strain


text: public

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: description

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: lung

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex

characteristic: title


text: Canis lupus familiaris

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: 17T_2_DNase-sc-2012-02-06T13:18:09Z-1302740

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Danio rerio

text: TL

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SL3_09_B10b-sc-2011-10-31T09:35:17Z-1281967

characteristic: Submitter Id

text: zebrafish

text: Danio rerio

text: Exome

text: Danio rerio

text: TL


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309935-sc-2012-07-20T11:56:20Z-1376496

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: Danio rerio

text: TL/AB

text: SC

text: public

text: SL6_10_E3-sc-2013-02-21T15:16:57Z-1513906

text: zebrafish

text: Danio rerio

text: Exome

characteristic: sample description

text: Danio rerio

text: TL/AB

characteristic: strain


text: Human

text: Promega

text: SC

text: public

text: Homo_sapiens-sc-2013-04-03T15:17:56Z-1607006

text: human

text: Homo sapiens

text: genomic DNA

text: Homo sapiens

text: Promega


text: Plasmodium falciparum

text: IT

text: SC

text: public

text: A4unselH3Lig-sc-2012-02-06T13:14:19Z-1243346

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: IT


text: Aarhus University, Department of Molecular Biology and Genetics

text: public

text: ArrayExpress

characteristic: broker name

text: pig

text: Protocols: Ten different tissues from two unrelated one year old Landrace boars were included in the study. Hence, total RNA was extracted from heart, spleen, liver, kidney, lung, musculus longissimus dorsi, occipital cortex, hypothalamus, frontal cortex, and cerebellum employing the mirVanaTM RNA extraction kit (Ambion) according to manufacturers protocol, yielding a total of 20 samples. RNA integrity was assessed by manual inspection of the individual RNA samples on a 2% agarose gel. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3 prime to 5 prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: description

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: kidney

characteristic: organism part

text: Sus scrofa

text: male

characteristic: sex

characteristic: title


text: Human

characteristic: ArrayExpress-Species

text: Promega

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Homo_sapiens-sc-2013-04-03T15:18:50Z-1607048

text: human

text: Homo sapiens

text: genomic DNA

text: Homo sapiens

text: Promega


text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: 2042STDY5252022-sc-2011-11-30T14:47:15Z-1309257

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-1631:Meis IBA input exp2

text: University of Manchester

text: public

text: E-MTAB-1631:Meis IBA input exp2

tag: Namespace:University of Manchester

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: The preparation of the material was as described in Kutejova et al., 2008. First branchial arches are dissected (the whole tissue), crosslinked and frozen in order to pool enough for ChIP. Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982. ChIP assays were performed as described in Kutejova et al., 2008, with the following modifications for ChIP-seq. The crosslinked material was sonicated to 300 bp fragments (Vibracell sonicator, Sonics: 8 times for 10 seconds at 50% output). Immunoprecipitation was performed starting from 12 pairs of first branchial arches from E11.5 embryos and incubating overnight at 4oC with 3 ug of pan-Meis antibodies or control IgG (Kutejova et al., 2008), followed by protein A beads (Invitrogen). Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982.

text: embryo

characteristic: developmental stage

text: 11.5 day

characteristic: gestational age

text: Mus musculus

characteristic: organism

text: Mus musculus

text: first branchial arch

text: Mus musculus

text: mixed sex

text: Meis IBA input exp2


characteristic: ENA-CHECKLIST

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ISB-USA

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RAD-seq reduced-genome sequencing of yeast strain for phylogenetic analysis

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: grit_4_rnaseq-sc-2012-02-06T13:06:34Z-1001689

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: SC_DSCC15506261-sc-2013-03-21T10:41:17Z-1600183

text: house mouse

text: Mus musculus

text: Tumour

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Xenopus tropicalis

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

text: SC_XTEP5236282-sc-2011-10-12T10:18:36Z-1288884

characteristic: Submitter Id

text: western clawed frog

text: Xenopus (Silurana) tropicalis

text: toe clip DNA prep

text: Xenopus (Silurana) tropicalis


text: Mycobacterium tuberculosis

text: SC

text: public

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


text: Homo Sapien

text: SC

text: public

text: SC_GCIGC5375890-sc-2012-08-02T07:45:43Z-1457575

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Homo Sapien

text: SC

text: public

text: SC_CTRAC5328755-sc-2012-04-04T13:26:25Z-1397301

text: human

text: Homo sapiens

text: Homo sapiens


text: Plasmodium falciparum

text: IT

text: SC

text: public

text: CTLA4pos-sc-2012-02-06T13:14:48Z-1243464

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: IT


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Science for Life Laboratory, Stockholm, Sweden

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: The use of human tissue samples was approved by the Uppsala Ethical Review Board (Reference #2011/473). Tissues samples, collected within the infrastructure of an established biobank, were embedded in Optimal Cutting Temperature (O.C.T.) compound and stored at -80C. A hematoxylin-eosin (HE) stained frozen section (4um) was prepared from each sample using a cryostat and the CryoJane Tape-Transfer System (Instrumedics, St. Louis, MO, USA). Each slide was examined by a pathologist to ensure proper tissue morphology. Three sections (10um) were cut from each frozen tissue block and collected into a tube for subsequent RNA extraction. The tissue was homogenized mechanically using a 3 mm steel grinding ball (VWR). Total RNA was extracted from cell lines and tissue samples using the RNeasy Mini Kit (Qiagen, Hilden, Germany) according to the manufacturers instructions. The extracted RNA samples were analyzed using either an Experion automated electrophoresis system (Bio-Rad Laboratories, Hercules, CA, USA) with the standard-sensitivity RNA chip or an Agilent 2100 Bioanalyzer system(Agilent Biotechnologies, Palo Alto, USA) with the RNA 6000 Nano Labchip Kit. Only samples of high-quality RNA (RNA Integrity Number 7.5) were used in the following mRNA sample preparation for sequencing. Illumina Truseq RNA v2

characteristic: description

text: adult

characteristic: developmental stage

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: frozen specimen

characteristic: specimen with known storage state


text: Danio rerio

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CH1073_482B12-sc-2011-10-27T10:23:38Z-1289972

text: zebrafish

text: Danio rerio

text: Danio rerio


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Humanitas Clinical and Research Center

text: public

characteristic: SRA accession

tag: Namespace:Humanitas Clinical and Research Center

text: ArrayExpress

text: cardiac myocyte

characteristic: cell type

text: house mouse

text: Protocols: 2-month-old male C57BL/6J mice were subjected under anesthesia to transverse aortic constriction for 1 week. Cardiomyocytes were isolated from the hearts at the end of perfusion with collagenase(collagenase type II). Immunoprecipitate DNA from Chromatin Immunoprecipitaion assay (ChIP) using antibody to H3K9ac,H3K27ac,H3K4me3, H3K79me2, H3K9me2, H3K9me3 and H3K27me3.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain or line

characteristic: title


text: female

characteristic: ArrayExpress-Sex

text: mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: RNA

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2042STDY5252538-sc-2012-02-22T11:51:20Z-1309882

text: house mouse

text: Mus musculus

text: Mus musculus


text: Haemonchus placei

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Haemonchus_placei-sc-2011-10-14T15:56:05Z-1289484

text: Haemonchus placei

text: Haemonchus placei


text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309922-sc-2012-08-22T15:41:48Z-1376470

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus musculus

text: SC

text: public

text: psdFrac1_d_rnaseq-sc-2012-02-06T13:08:36Z-1001796

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309891-sc-2012-08-22T15:40:53Z-1376402

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus musculus

text: SC

text: public

text: SC_GCIGC5274883-sc-2012-01-23T14:02:01Z-1335127

text: house mouse

text: Mus musculus

text: Mus musculus


text: NAAS

text: public

text: Japanese rice

text: Whole genome resequencing of the Korean rice, Giho, using Illumina Hiseq 2000

characteristic: description

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group


E-MTAB-1632:Meis IIBA input exp1

text: University of Manchester

text: public

text: E-MTAB-1632:Meis IIBA input exp1

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The preparation of the material was as described in Kutejova et al., 2008. Second branchial arches are dissected (the whole tissue), crosslinked and frozen in order to pool enough for ChIP. Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982. ChIP assays were performed as described in Kutejova et al., 2008, with the following modifications for ChIP-seq. The crosslinked material was sonicated to 300 bp fragments (Vibracell sonicator, Sonics: 8 times for 10 seconds at 50% output). Immunoprecipitation was performed starting from 12 pairs of second branchial arches from E11.5 embryos and incubating overnight at 4oC with 3 ug of pan-Meis antibodies or control IgG (Kutejova et al., 2008), followed by protein A beads (Invitrogen). Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982.

text: embryo

characteristic: developmental stage

text: 11.5 day

characteristic: gestational age

text: Mus musculus

text: Mus musculus

text: second branchial arch

characteristic: organism part

text: Mus musculus

text: mixed sex

characteristic: sex

text: Meis IIBA input exp1

characteristic: title


text: Haemonchus contortus

text: SC

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

characteristic: organism

text: bacterial artificial chromosome (BAC)

characteristic: sample description

text: Haemonchus contortus


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 2042STDY5261186-sc-2011-12-15T14:36:00Z-1319690

text: house mouse

text: Mus musculus

text: Mus musculus


text: Plasmodium falciparum

text: IT

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: 3G8Mbo3C_1-sc-2012-02-06T13:14:16Z-1243343

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: IT

characteristic: strain


text: Primary macrophages

characteristic: ArrayExpress-CellType

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Bone marrow

characteristic: ArrayExpress-OrganismPart

text: WT

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: Mus musculus

text: 24 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: house mouse

text: Mus musculus

text: RNA from BMDM

text: Mus musculus

text: Mus musculus


text: University of Liverpool

text: public

characteristic: INSDC status

tag: Namespace:University of Liverpool

characteristic: Submitter Id

text: 4 year

characteristic: age

text: abattoir

characteristic: biosource provider

text: fresh sample

characteristic: biosource type

text: ArrayExpress

characteristic: broker name

text: chondrocyte

characteristic: cell type

text: horse

characteristic: common name

text: Protocols: Full thickness cartilage was removed from the entire surface of MCPII.All samples were scored macroscopically to determine any pathological abnormalities of the distal condyles of the distal third metacarpus. For RNA extraction the Guanidium-thiocyanate-phenol-chloroform technique, with ethanol extraction was used (Chomczynski, P. and N. Sacchi, Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem, 1987

characteristic: description

text: normal

characteristic: disease state

text: Equus caballus

characteristic: organism

text: Equus caballus

text: cartilage

characteristic: organism part

text: Equus caballus

characteristic: title


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: 2042STDY5252497-sc-2012-02-22T11:50:48Z-1309805

text: house mouse

text: Mus musculus

text: Mus musculus


E-MTAB-1241:H3K36me3 +4OHT ChIP

text: public

characteristic: INSDC status

text: E-MTAB-1241:H3K36me3 +4OHT ChIP

tag: Namespace:1 Universite de Toulouse ; UPS ; LBCMCP ; 118 route de Narbonne, 31062, Toulouse, France

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: U20S AsiSI-ER cells were cultured in Dulbeccos modified Eagles medium (DMEM) supplemented with antibiotics and 10% FCS (Invitrogen) at 37 C under a humidified atmosphere with 5% CO2. Cells were treated with 300 nM 4OHT for 4 hours ChIP assays were carried out according the protocol described in (Iacovoni et al, 2010). Briefly, 200 ug of chromatin was subjected to immunoprecipitation using 2 ug of a gammaH2AX antibody (Epitomics 2212-1), XRCC4 (Abcam), or Rad51 (Santa Cruz). For ChIP against PolII-S2P (Abcam) 50 ug of chromatin was used, instead of 200 ug. After the washes the beads/chromatin complexes were re-suspended in 200 uL of TE buffer (Tris 10mM pH8, EDTA 0,5mM pH8) and were directly subjected to crosslink reversal in presence of 0.5% SDS overnight at 70 C. Following crosslink reversion, all immunoprecipitated DNA and input DNA were purified by phenol/chloroform, followed by DNA precipitation. DNA amount was quantified using the Quant-iTTM kit from Invitrogen. 10ng of DNA was next used for sequencing.

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: H3K36me3 +4OHT ChIP


text: Streptococcus pneumoniae

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: strain


text: Staphylococcus aureus

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Mus Musculus

text: SC

text: public

text: mES_i2m_s1_cell7-sc-2013-06-06T21:57:13Z-1643321

text: house mouse

characteristic: common name

text: Mus musculus

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: Mouse

text: SC

text: public

text: SC_MTV5229159-sc-2011-10-12T11:48:23Z-1281392

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: male

characteristic: ArrayExpress-Sex

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309875-sc-2012-07-19T11:02:03Z-1376545

text: human

text: Homo sapiens

text: Homo sapiens


text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_MFY5515317-sc-2013-04-16T12:01:47Z-1610047

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: diseased

characteristic: ArrayExpress-DiseaseState

text: cancer

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

text: cancer

characteristic: EGA-Disease

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 5__SB_induced_tumour_40-sc-2011-11-07T15:36:39Z-1297025

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: Human

text: Promega

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Homo_sapiens-sc-2013-04-03T15:19:12Z-1607070

text: human

text: Homo sapiens

text: genomic DNA

text: Homo sapiens

text: Promega


text: male

text: Homo Sapien

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC_GMFUL5306386-sc-2012-05-09T14:51:05Z-1371770

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Danio rerio

text: TL/AB

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: SL6_08_D7-sc-2013-02-21T15:14:21Z-1513745

text: zebrafish

characteristic: common name

text: Danio rerio

text: Exome

text: Danio rerio

text: TL/AB

characteristic: strain


text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252143-sc-2011-11-30T14:51:05Z-1309489

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Danio rerio

characteristic: ArrayExpress-Species

text: SC

text: public

text: CH1073_449G24-sc-2013-05-28T14:21:45Z-1633927

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: TL

text: SC

text: public

text: SL3_08_F7b-sc-2011-10-31T09:34:01Z-1281852

text: zebrafish

text: Danio rerio

text: Exome

characteristic: sample description

text: Danio rerio

text: TL


text: diseased

characteristic: ArrayExpress-DiseaseState

text: cancer

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

text: cancer

characteristic: EGA-Disease

text: SC

text: public

text: 5__SB_induced_tumour_20-sc-2011-11-07T15:36:26Z-1297005

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: female

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 2042STDY5252187-sc-2011-11-30T14:52:18Z-1309567

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MouseTumoursApr2011a-sc-2011-04-14T11:53:50Z-1122984

text: western European house mouse

text: Mus musculus domesticus

text: PiggyBAC in Mice

text: Mus musculus domesticus


text: Streptococcus pneumoniae

text: GH 01

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: GH 01


text: Haemonchus contortus

text: SC

text: public

text: barber pole worm

characteristic: common name

text: Haemonchus contortus

text: bacterial artificial chromosome (BAC)

text: Haemonchus contortus


characteristic: ENA-CHECKLIST

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ISB-USA

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RAD-seq reduced-genome sequencing of yeast strain for phylogenetic analysis

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: tnik1_1_rnaseq-sc-2012-02-06T13:05:56Z-1001655

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309866-sc-2012-08-24T13:42:22Z-1376527

text: human

text: Homo sapiens

text: Homo sapiens


text: Saccharomyces cerevisiae

text: SC

text: public

text: 2014STDY5370438-sc-2012-09-24T16:38:56Z-1450363

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Mus musculus

text: AKR/J

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: AKR/J

characteristic: strain


text: Human

text: Promega

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Homo_sapiens-sc-2013-04-03T15:19:20Z-1607078

text: human

text: Homo sapiens

text: genomic DNA

characteristic: sample description

text: Homo sapiens

text: Promega


text: Homo Sapien

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2014STDY5345506-sc-2012-05-25T10:41:24Z-1419638

text: human

text: Homo sapiens

text: Homo sapiens


text: Humanitas Clinical and Research Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: cardiac myocyte

characteristic: cell type

text: house mouse

text: Protocols: 2-month-old male C57BL/6J mice were subjected under anesthesia to transverse aortic constriction for 1 week. Cardiomyocytes were isolated from the hearts at the end of perfusion with collagenase(collagenase type II). Immunoprecipitate DNA from Chromatin Immunoprecipitaion assay (ChIP) using antibody to H3K9ac,H3K27ac,H3K4me3, H3K79me2, H3K9me2, H3K9me3 and H3K27me3.

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

characteristic: strain or line


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

text: public

text: SC_GMJOL5309802-sc-2012-08-22T15:40:54Z-1376403

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Aarhus University, Department of Molecular Biology and Genetics

text: public

text: ArrayExpress

text: pig

text: Protocols: Ten different tissues from two unrelated one year old Landrace boars were included in the study. Hence, total RNA was extracted from heart, spleen, liver, kidney, lung, musculus longissimus dorsi, occipital cortex, hypothalamus, frontal cortex, and cerebellum employing the mirVanaTM RNA extraction kit (Ambion) according to manufacturers protocol, yielding a total of 20 samples. RNA integrity was assessed by manual inspection of the individual RNA samples on a 2% agarose gel. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3 prime to 5 prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: hypothalamus

characteristic: organism part

text: Sus scrofa

text: male

characteristic: title


text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC_GCIGC5375951-sc-2012-08-02T09:01:34Z-1457636

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: cinap_a_rnaseq-sc-2012-02-06T13:07:20Z-1001729

text: house mouse

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5251945-sc-2011-11-30T14:47:40Z-1309289

text: house mouse

text: Mus musculus

text: Mus musculus


text: Hatching : 52 hpf Long pec ZFS:0000033 - pec fin ZFS:0000034

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_10_2_sibling-sc-2013-03-07T09:41:23Z-1580260

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 10 clutch2. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph10

characteristic: sample description

text: Danio rerio

text: mixed

characteristic: strain


text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: 2042STDY5251943-sc-2011-11-30T14:47:35Z-1309282

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 2042STDY5252874-sc-2012-02-22T11:54:25Z-1310182

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: 2042STDY5252556-sc-2012-02-22T11:51:34Z-1309914

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

text: Homo Sapien

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC_GMJOL5309984-sc-2012-07-20T11:57:07Z-1376583

text: human

text: Homo sapiens

text: Homo sapiens


text: Plasmodium falciparum

text: IT

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9Ac3G8Ctl-sc-2012-02-06T13:15:10Z-1243479

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

text: IT


text: male

text: Homo Sapien

text: SC

text: public

text: 2042STDY5251922-sc-2012-03-08T09:50:44Z-1309246

text: human

text: Homo sapiens

text: Homo sapiens


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium falciparum

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: HB3EXO16_cDNA-sc-2012-09-21T11:20:56Z-1483620

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: 16hr blood-stage exonuclease treated RNA

text: Plasmodium falciparum


text: Danio rerio

text: SC

text: public

text: CH73_319F13-sc-2013-07-05T13:38:15Z-1660440

text: zebrafish

text: Danio rerio

text: Danio rerio


text: male

text: Homo Sapien

text: SC

text: public

text: SC_GMJOL5309924-sc-2012-08-24T13:41:50Z-1376474

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus Musculus

text: SC

text: public

text: mES_i2m_s1_cell85-sc-2013-06-06T21:59:33Z-1643399

text: house mouse

text: Mus musculus

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ISB-USA

text: public

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RAD-seq reduced-genome sequencing of yeast strain for phylogenetic analysis

characteristic: title


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: gPool_3_4-sc-2013-06-26T16:18:46Z-1654035

text: house mouse

text: Mus musculus

text: PCR products

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: ILBZfGRC5521710-sc-2013-04-26T15:13:32Z-1616887

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

text: Danio rerio


characteristic: ENA-FIRST-PUBLIC

text: Aarhus University, Department of Molecular Biology and Genetics

text: public

text: ArrayExpress

characteristic: broker name

text: pig

text: Protocols: At an average weight of approximately 30 kg the offspring was transferred to the finishing unit. Slaughtering was done when the largest pig in the pen reached 110 kg. Blood samples were collected from the sows and muscle, lung and liver tissue from the boar and offspring were sampled at slaughter. The RNA fragments were then copied into first strand cDNA using reverse transcriptase and random hexamer primers followed by second strand cDNA synthesis using DNA Polymerase I and RNaseH. The short cDNA fragments were finally prepared for sequencing on the Illumina Genome Analyzer using reagents provided in the Illumina Genomic DNA Sequencing Sample Prep Kit. The cDNA fragments were end-repaired using T4 DNA polymerase and Klenow DNA polymerase and a single adenine nucleotide base was added to the cDNA fragments by using 3prime to 5prime exonuclease. This was followed by ligation of Illumina adaptors, gel purification of fragments of approximately 200 bases in size and finally PCR enrichment for 15 cycles. The concentrations of the libraries were measured using Invitrogen Qubit fluorometer and the size and purity were determined using the Agilent DNA 1000 Kit on Agilent 2100 Bioanalyzer. The 89 libraries were diluted in buffer EB from QIAGEN to 10 nM, denaturated with 2 N NaOH to a final DNA concentration of 1.0 nM, diluted to 4 pM with pre-chilled hybridization buffer from Illumina and loaded in individual lanes into a 1.0 mm flowcell together with a single lane of a 2 pM PhiX control library from Illumina.

characteristic: description

text: Single boar founder family

characteristic: family history

characteristic: individual

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: longissimus dorsi

characteristic: organism part

text: Sus scrofa


text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: mES_lif_s1_cell30-sc-2013-07-11T08:56:51Z-1661127

text: house mouse

text: Mus musculus

text: mRNA-seq Nextera library

text: Mus musculus


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

characteristic: ArrayExpress-Species

text: SC

text: public

text: 2042STDY5251925-sc-2012-03-08T09:10:49Z-1309250

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus Musculus

text: SC

text: public

text: 2042STDY5305504-sc-2012-03-05T08:23:07Z-1370480

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 2042STDY5252422-sc-2012-03-13T13:18:02Z-1309679

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

text: public

text: CH1073_465D9-sc-2013-07-05T13:36:43Z-1660338

text: zebrafish

text: Danio rerio

text: Danio rerio


text: female

text: Haemonchus contortus

text: inbred ISE

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Haemonchus_contortus-sc-2012-02-06T13:16:56Z-1289864

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: inbred ISE

characteristic: strain


text: Dendritic cells (Cd11c+ sorted)

characteristic: ArrayExpress-CellType

text: Anti H3K27me3 Millipore 07-449 (lot 1662421)

characteristic: ArrayExpress-Immunoprecipitate

text: Mus musculus

text: SC

text: public

text: m_DC_H3K27me3_P-sc-2011-11-15T14:51:01Z-483705

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

characteristic: sample description

text: Mus musculus


characteristic: ENA-LAST-UPDATE

text: EBI

text: public

text: Qazvin

text: Bashgol

text: Asiatic mouflon

text: Asiatic Mouflon IROO-K7-0642 from NextGen project

characteristic: description

text: Iran

characteristic: geographic location (country and/or sea)

text: 36.721474 degrees

characteristic: latitude

text: 49.32136 degrees

characteristic: longitude

text: Ovis orientalis

characteristic: organism

characteristic: sampling date

text: Ovis orientalis

text: male

characteristic: sex

text: Ovis orientalis

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PDP1597052-sc-2011-05-17T17:23:42Z-984593

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: synthetic construct

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: synthetic construct

text: ARG 1-3

characteristic: sample description

text: synthetic construct


text: Humanitas Clinical and Research Center

text: public

text: ArrayExpress

characteristic: broker name

text: cardiac myocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: 2-month-old male C57BL/6J mice were subjected under anesthesia to transverse aortic constriction for 1 week. Cardiomyocytes were isolated from the hearts at the end of perfusion with collagenase(collagenase type II). Immunoprecipitate DNA from Chromatin Immunoprecipitaion assay (ChIP) using antibody to H3K9ac,H3K27ac,H3K4me3, H3K79me2, H3K9me2, H3K9me3 and H3K27me3.

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: strain or line


text: Mus Musculus

text: SC

text: public

text: 2042STDY5305514-sc-2012-03-05T08:23:31Z-1370499

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Queen's University Belfast

text: public

tag: Namespace:Queen's University Belfast

text: 14 day

characteristic: age

characteristic: block

text: ArrayExpress

text: velvet grass

text: Protocols: Arsenate tolerant and non-tolerant Holcus lanatus L. Genovars were selected randomly from a screened population, the arsenic uncontaminated Cruickshank Botanic Garden (CBG) and tillers of the plants were grown hydroponically for 2 weeks in 50ml individual centrifuge tubes with base of the tubes covered in tin-foil to block out light, in heated glasshouse at around 18C under supplemental sodium lamps. Plant tillers from arsenic tolerant (T) and non-tolerant (N) plants were grown hydroponically for 2 weeks in 50ml complete Hogland solution (plusP treatment) or 50ml Hogland solution minus Phosphate (minusP treatment). The experiment therefore investigated 4 treatments (TplusP, TminusP, NplusP, NminusP) and was repeated 2 time. Experiment1 was conducted on 4 plants (n=1), Experiment2 was conducted on 16 plants (n=4). dry roots and shoots for each replicate were ground under liquid nitrogen and total RNA was extrected using the Plant Rneasy kit (Qiagen), with additional on-column Dnase treatment. Extracted RNA of each sample was stored at -80C until shipping on dry ice for sequencing Illumina TrueSeq RNA sample preparation

text: Hogland solution phosphatelus phosphate

characteristic: growth condition

characteristic: individual

text: Holcus lanatus

text: Holcus lanatus L

text: Arsenic-non-tolerant

characteristic: phenotype

text: Holcus lanatus

text: fresh specimen

characteristic: specimen with known storage state

characteristic: title


characteristic: External Id

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: Protocols: Human feces were plated on YPD (yeast extract 1%, peptone 2%, D-Glucose 2%) agar plates added with antibiotics to prevent bacterial growth. Yeast colonies were then collected and species was assessed by ITS1-4 sequencing. Cells were grown in YPD liquid medium for genomic DNA extraction DNA was extracted from 10^9 pelleted cells with the Qiagen Genomic DNA Isolation Kit following the manufacturer's instructions.

text: clinical strain

characteristic: environmental history

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: frozen sample

characteristic: strain


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: mES_lif_s1_cell43-sc-2013-07-11T08:57:02Z-1661140

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: Hatching : Long pec - ZFS:0000033

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_13_5_mutant-sc-2013-03-25T15:42:25Z-1603266

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 13 clutch 5. A 5 base indexing sequence (AACCG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph13

text: Danio rerio

text: mixed


text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2042STDY5252501-sc-2012-02-22T11:50:52Z-1309810

text: house mouse

text: Mus musculus

text: Mus musculus


text: Danio rerio

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CH1073_423M2-sc-2013-05-28T14:21:42Z-1633924

text: zebrafish

text: Danio rerio

text: Danio rerio


text: TGAC

text: public

characteristic: Submitter Id

text: bread wheat

text: Wheat CS42 CSS 2BL flow-sorted DNA

characteristic: description

text: Triticum aestivum

text: Triticum aestivum

text: Wheat CS42 CSS 2BL flow-sorted DNA

characteristic: title


text: Homo Sapien

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: 2019STDY5279501-sc-2012-01-27T12:25:58Z-1340771

text: human

text: Homo sapiens

text: Homo sapiens


text: Larval - protruding mouth ZFS:0000035

text: Whole Embryo

text: Danio rerio

text: mixed

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: ZMP_phenotype_12_4_sibling-sc-2013-03-07T09:46:38Z-1580278

text: zebrafish

characteristic: common name

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 12 clutch4. A 5 base indexing sequence (CGGCC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph12

text: Danio rerio

text: mixed

characteristic: strain


text: Mus Musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: mES_lif_s1_cell50-sc-2013-07-11T08:57:09Z-1661147

text: house mouse

text: Mus musculus

characteristic: organism

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: Human

text: Promega

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

text: public

text: Homo_sapiens-sc-2013-04-03T15:19:00Z-1607058

text: human

text: Homo sapiens

text: genomic DNA

text: Homo sapiens

text: Promega


text: Homo Sapien

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC_CTRAC5375800-sc-2012-07-31T07:50:39Z-1457485

text: human

text: Homo sapiens

text: Homo sapiens


text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mouse

text: SC

text: public

characteristic: SRA accession

text: SC_HUWE5569732-sc-2013-07-16T08:26:27Z-1667110

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus


text: female

characteristic: ArrayExpress-Sex

text: Homo Sapien

text: SC

text: public

text: 2042STDY5251910-sc-2011-11-29T10:16:24Z-1309220

text: human

text: Homo sapiens

text: Homo sapiens


text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Tail

characteristic: ArrayExpress-OrganismPart

text: Wildtype

characteristic: ArrayExpress-Phenotype

text: female

text: mus musculus

characteristic: ArrayExpress-Species

text: FVB/OLA

text: SC

text: public

text: house mouse

text: Mus musculus

text: tail skin RNA

text: Mus musculus

text: FVB/OLA


text: Staphylococcus aureus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: strain


characteristic: ENA-CHECKLIST

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ISB-USA

text: public

text: baker's yeast

characteristic: common name

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: RAD-seq reduced-genome sequencing of yeast strain for phylogenetic analysis

characteristic: title


text: Plasmodium falciparum

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Streptococcus pneumoniae

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: 2042STDY5252120-sc-2011-11-30T14:50:20Z-1309439

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: mES_lif_s1_cell11-sc-2013-07-11T08:56:31Z-1661108

text: house mouse

text: Mus musculus

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: strain


text: Mus musculus

text: SC

text: public

text: tnik_h_rnaseq-sc-2012-02-06T13:08:56Z-1001811

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: male

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252478-sc-2011-11-30T14:55:57Z-1309786

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Danio rerio

text: Tuebingen

text: SC

text: public

text: Zebrafish_embryo_at_2_dpf-sc-2012-02-06T12:56:37Z-7328

text: zebrafish

text: Danio rerio

text: Danio rerio

text: Tuebingen


text: Danio rerio

text: SC

text: public

text: CH73_91E4-sc-2013-07-05T13:38:38Z-1660468

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Homo Sapien

text: SC

text: public

text: SC_GCIGC5376023-sc-2012-08-03T08:28:24Z-1457708

text: human

text: Homo sapiens

text: Homo sapiens


text: female

text: Mus Musculus

text: SC

text: public

text: 2042STDY5252479-sc-2011-11-30T14:55:58Z-1309787

text: house mouse

text: Mus musculus

text: Mus musculus


text: Homo Sapien

text: SC

text: public

text: SC_GCIGC5375912-sc-2012-08-02T07:46:08Z-1457597

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: DA07_TotalR-sc-2012-05-23T10:40:53Z-1425490

text: human

text: Homo sapiens

text: Homo sapiens


text: Hatching : Long pec - ZFS:0000033

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_13_1_sibling-sc-2013-03-25T15:42:18Z-1603259

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically normal embryos from ZMP phenotype 13 clutch 1. A 5 base indexing sequence (AGAAG) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph13

text: Danio rerio

text: mixed


text: male

text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: 2042STDY5252453-sc-2012-03-13T13:19:02Z-1309740

text: house mouse

text: Mus musculus

text: Mus musculus


text: EMBL-EBI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: StrainOrLine

text: 8 week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: ChIPseq, RNAseq and RT-PCR experiments were performed on testis and liver material isolated from Mus musculus C57BL/6 (Mmus), testis from Canis Familiaris and testis from Monodelphis domestica. Mmus (male adults, eight weeks old) were obtained from the Cambridge Research Institute under Home Office license PPL 80/2197. Dog samples were obtained from male, 14 month old animals (Harlan, UK). Opossum samples were obtained from male, 17 month old animals (University of Glasgow, UK). All tissues were either treated post-mortem with 1% formaldehyde for ChIP experiments or flash-frozen in liquid N2 for RNA experiments.

characteristic: description

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from the vomeronasal organ of adult male C57BL/6J mouse

characteristic: sample description

text: Mus musculus


text: Mus Musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2042STDY5252500-sc-2012-02-22T11:50:51Z-1309808

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus


text: Danio rerio

text: SC

characteristic: INSDC last update

text: public

text: ILBZfGRC5521657-sc-2013-04-26T15:12:23Z-1616834

text: zebrafish

text: Danio rerio

text: Danio rerio


text: OSTEOBLASTS

characteristic: ArrayExpress-CellType

text: DMSO

characteristic: ArrayExpress-Compound

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Calvaria

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: 48 hours

characteristic: ArrayExpress-TimePoint

text: SC

text: public

text: Obmel_22-sc-2012-11-08T12:10:13Z-1511681

text: house mouse

text: Mus musculus

text: RNA from Osteoblasts

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ISB-USA

text: public

characteristic: INSDC status

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RAD-seq reduced-genome sequencing of yeast strain for phylogenetic analysis

characteristic: title


text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: mES_lif_s1_cell69-sc-2013-07-11T08:57:28Z-1661166

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: mRNA-seq Nextera library

characteristic: sample description

text: Mus musculus


text: Danio rerio

text: SC

characteristic: INSDC last update

text: public

text: ZFOS_2623D6-sc-2012-02-29T12:45:06Z-1372566

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: ILBZfGRC5521693-sc-2013-04-26T15:13:12Z-1616870

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: ILBZfGRC5521656-sc-2013-04-26T15:12:21Z-1616833

text: zebrafish

text: Danio rerio

text: Danio rerio


text: Danio rerio

text: SC

text: public

text: DKEY_123L5-sc-2013-05-28T14:23:14Z-1634008

text: zebrafish

text: Danio rerio

text: Danio rerio


text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: gPool_3_3-sc-2013-06-26T16:18:18Z-1654034

text: house mouse

text: Mus musculus

text: PCR products

text: Mus musculus


text: Homo Sapien

text: SC

text: public

text: SC_GCIGC5375929-sc-2012-08-02T07:46:34Z-1457614

text: human

text: Homo sapiens

text: Homo sapiens


text: Saccharomyces cerevisiae

text: SC

text: public

text: 2014STDY5370457-sc-2012-09-24T16:39:19Z-1450382

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: Larval - protruding mouth ZFS:0000035

characteristic: ArrayExpress-DevelopmentalStage

text: Whole Embryo

characteristic: ArrayExpress-OrganismPart

text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: ZMP_phenotype_12_1_mutant-sc-2013-03-07T09:46:28Z-1580271

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 12 clutch1. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph12

text: Danio rerio

text: mixed

characteristic: strain


E-SYBR-4:M28-2D rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL-EBI

text: public

characteristic: INSDC status

text: E-SYBR-4:M28-2D rep2

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: baker's yeast

text: Protocols: to be confirmed to be confirmed For each sample, one paired-end mRNA library with approximately 150bp insert size was prepared using the TruSeq RNA Sample Preparation Kit v2 (Illumina).

characteristic: description

text: filigreed colony

characteristic: morphology

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain or line

text: M28-2D rep2

text: trifluoroleucine sensitive

characteristic: trifluoroleucine resistance


text: Anopheles gambiae

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum


text: diseased

characteristic: ArrayExpress-DiseaseState

text: cancer

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

text: cancer

characteristic: EGA-Disease

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 5__SB_induced_tumour_11-sc-2011-11-07T15:36:20Z-1296996

text: house mouse

text: Mus musculus

text: transposon-induced tumour

characteristic: sample description

text: Mus musculus


text: Institut de la Recherche Agronomique

text: public

characteristic: INSDC status

tag: Namespace:Institut de la Recherche Agronomique

characteristic: biological replicate

text: ArrayExpress

characteristic: broker name

text: oocyte

characteristic: cell type

text: sheep

text: Protocols: Laser Capture Microdissection from Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection Bonnet et al 2010 (doi: 10.1186/1471-2164-12-417) RNA extraction from Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection Bonnet et al 2010 (doi: 10.1186/1471-2164-12-417) T7 linear amplification from Transcriptome profiling of sheep granulosa cells and oocytes during early follicular development obtained by Laser Capture Microdissection Bonnet et al 2010 (doi: 10.1186/1471-2164-12-417) All RNAseq libraries were constructed from 200 ng of aRNA using Illumina TruSeq RNA Sample Prep (Illumina, San Diego, CA USA) following manufacturers instruction. Each biological replicate was identified by a different index. Libraries were quantified using QPCR NGS Library Quant Kit (Agilent). Three libraries were pooled and loaded randomly per lane at 8 pM concentration.

characteristic: description

text: primary follicle

characteristic: developmental stage

text: Ovis aries

text: Ovis aries

text: ovary

characteristic: organism part

text: Ovis aries

text: female

characteristic: sex

text: frozen specimen

characteristic: specimen with known storage state

characteristic: title


text: Streptococcus pneumoniae

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Sample86-sc-2012-01-06T08:05:38Z-1330176

characteristic: Submitter Id

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae


text: Clostridium difficile

text: Sanger 017.68

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

text: LSHTM_195-sc-2013-07-31T10:26:15Z-1673273

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.68

characteristic: strain


text: Clostridium difficile

text: Sanger 017.80

text: SC

text: public

text: LSHTM_196-sc-2013-07-31T10:26:16Z-1673274

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.80


text: Clostridium difficile

text: SC

text: public

text: LSHTM_198-sc-2013-07-31T10:26:18Z-1673276

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_199-sc-2013-07-31T10:26:19Z-1673277

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_201-sc-2013-07-31T10:26:22Z-1673279

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: Sanger 017.44

text: SC

text: public

text: LSHTM_202-sc-2013-07-31T10:26:23Z-1673280

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.44


text: Clostridium difficile

text: Sanger 017.81

text: SC

text: public

text: LSHTM_204-sc-2013-07-31T10:26:25Z-1673282

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.81


text: Clostridium difficile

text: SC

text: public

text: LSHTM_205-sc-2013-07-31T10:26:26Z-1673283

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_207-sc-2013-07-31T10:26:28Z-1673285

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SI 032

text: SC

text: public

text: LSHTM_208-sc-2013-07-31T10:26:29Z-1673286

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: SI 032


text: Clostridium difficile

text: Sanger 017.47

text: SC

text: public

text: LSHTM_210-sc-2013-07-31T10:26:31Z-1673288

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.47


text: Clostridium difficile

text: Sanger 017.70

text: SC

text: public

text: LSHTM_211-sc-2013-07-31T10:26:32Z-1673289

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.70


text: Clostridium difficile

text: SC

text: public

text: LSHTM_213-sc-2013-07-31T10:26:33Z-1673291

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_214-sc-2013-07-31T10:26:34Z-1673292

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SI 047

text: SC

text: public

text: LSHTM_216-sc-2013-07-31T10:26:36Z-1673294

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: SI 047


text: Clostridium difficile

text: PT 1307

text: SC

text: public

text: LSHTM_217-sc-2013-07-31T10:26:37Z-1673295

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: PT 1307


text: Clostridium difficile

text: Sanger 017.49

text: SC

text: public

text: LSHTM_218-sc-2013-07-31T10:26:39Z-1673296

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.49


text: Clostridium difficile

text: Sanger 017.71

text: SC

text: public

text: LSHTM_219-sc-2013-07-31T10:26:40Z-1673297

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.71


text: Clostridium difficile

text: SC

text: public

text: LSHTM_220-sc-2013-07-31T10:26:40Z-1673298

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_222-sc-2013-07-31T10:26:42Z-1673300

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_223-sc-2013-07-31T10:26:43Z-1673301

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SI 1101

text: SC

text: public

text: LSHTM_225-sc-2013-07-31T10:26:45Z-1673303

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: SI 1101


text: Clostridium difficile

text: Sanger 017.51

text: SC

text: public

text: LSHTM_226-sc-2013-07-31T10:26:46Z-1673304

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.51


text: Clostridium difficile

text: SC

text: public

text: LSHTM_230-sc-2013-07-31T10:26:50Z-1673308

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_233-sc-2013-07-31T10:26:53Z-1673311

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_236-sc-2013-07-31T10:26:55Z-1673314

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: SC

text: public

text: LSHTM_239-sc-2013-07-31T10:26:58Z-1673317

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: Sanger 017.60

text: SC

text: public

text: LSHTM_242-sc-2013-07-31T10:27:01Z-1673320

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.60


text: Clostridium difficile

text: SC

text: public

text: LSHTM_245-sc-2013-07-31T10:27:05Z-1673323

text: Peptoclostridium difficile

text: Peptoclostridium difficile


text: Clostridium difficile

text: WA 0810

text: SC

text: public

text: LSHTM_248-sc-2013-07-31T10:27:20Z-1673326

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: WA 0810


text: Clostridium difficile

text: Sanger 017.75

text: SC

text: public

text: LSHTM_251-sc-2013-07-31T10:27:23Z-1673329

text: Peptoclostridium difficile

text: Peptoclostridium difficile

text: Sanger 017.75


text: adult

characteristic: ArrayExpress-DevelopmentalStage

text: female

characteristic: ArrayExpress-Sex

text: Dracunculus medinensis

text: SC

text: public

text: Dracunculus_medinensis-sc-2013-07-31T11:00:53Z-1673463

text: Guinea worm

characteristic: common name

text: Dracunculus medinensis

text: section of adult female worm

characteristic: sample description

text: Dracunculus medinensis


text: L1 larvae

text: mixed

text: Dracunculus medinensis

characteristic: ArrayExpress-Species

characteristic: External Id

text: SC

text: public

text: Dracunculus_medinensis-sc-2013-07-31T11:01:14Z-1673464

text: Guinea worm

text: Dracunculus medinensis

text: mixed sex L1 larvae

text: Dracunculus medinensis


text: adult

text: female

text: Dracunculus medinensis

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Dracunculus_medinensis-sc-2013-07-31T11:01:17Z-1673465

text: Guinea worm

text: Dracunculus medinensis

text: section of adult female worm

text: Dracunculus medinensis


text: L1 larvae

text: mixed

text: Dracunculus medinensis

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Dracunculus_medinensis-sc-2013-07-31T11:01:18Z-1673466

text: Guinea worm

text: Dracunculus medinensis

text: mixed sex L1 larvae

text: Dracunculus medinensis


text: recombinant CXXC from mMBD1

characteristic: ArrayExpress-Immunoprecipitate

text: Cerebellum

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: m_Cerebellum_CXXC_M-sc-2011-11-15T14:55:28Z-2412

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: DNA isolated from CxxC Affinity Purification (CAP)

text: Mus musculus


text: Cd4+ cells

characteristic: ArrayExpress-CellType

text: recombinant CXXC from mMBD1

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: m_CD4_CXXC_M-sc-2011-11-15T14:55:30Z-2415

text: house mouse

text: Mus musculus

text: Mus musculus


text: Th1 cells

text: Anti H3K27me3 Millipore 07-449 (lot 1662421)

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: m_Th1_H3K27me3_P-sc-2011-11-15T15:00:34Z-483702

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: recombinant CXXC from mMBD1

text: Sperm

text: Mus musculus

text: SC

text: public

text: m_Sperm_CXXC_M-sc-2011-11-15T15:10:30Z-2409

text: house mouse

text: Mus musculus

text: Mus musculus


text: Homo Sapien

text: SC

text: public

text: SC_GCIGC5236834-sc-2011-10-17T15:46:06Z-1289734

text: human

text: Homo sapiens

text: Homo sapiens


text: diseased

characteristic: ArrayExpress-DiseaseState

text: cancer

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

text: cancer

characteristic: EGA-Disease

text: SC

text: public

text: 5__SB_induced_tumour_57-sc-2011-11-07T15:36:51Z-1297042

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

characteristic: ArrayExpress-Species

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_58-sc-2011-11-07T15:36:52Z-1297043

text: house mouse

characteristic: common name

text: Mus musculus

text: transposon-induced tumour

characteristic: sample description

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5__SB_induced_tumour_60-sc-2011-11-07T15:36:53Z-1297045

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: 5__SB_induced_tumour_63-sc-2011-11-07T15:36:55Z-1297048

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_64-sc-2011-11-07T15:36:56Z-1297049

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_66-sc-2011-11-07T15:36:57Z-1297051

text: house mouse

text: Mus musculus

characteristic: organism

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_67-sc-2011-11-07T15:36:58Z-1297052

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_69-sc-2011-11-07T15:36:59Z-1297054

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_70-sc-2011-11-07T15:37:00Z-1297055

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 5__SB_induced_tumour_73-sc-2011-11-07T15:37:02Z-1297058

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

text: cancer

text: SC

text: public

text: 3__SB_induced_tumour_2-sc-2011-11-07T15:37:04Z-1297060

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: recombinant CXXC from mMBD1

characteristic: ArrayExpress-Immunoprecipitate

text: Sperm

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

text: public

text: m_Sperm_CXXC_M-sc-2011-11-09T13:40:29Z-2408

text: house mouse

text: Mus musculus

text: DNA isolated from CxxC Affinity Purification (CAP)

text: Mus musculus


text: recombinant CXXC from mMBD1

text: Sperm

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: m_Sperm_CXXC_M-sc-2011-11-09T13:40:31Z-2409

text: house mouse

text: Mus musculus

text: Mus musculus


text: recombinant CXXC from mMBD1

text: Blood

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: m_Blood_CXXC_M-sc-2011-11-09T13:40:31Z-2410

text: house mouse

text: Mus musculus

text: Mus musculus


text: recombinant CXXC from mMBD1

text: Blood

text: Mus musculus

text: SC

text: public

text: m_Blood_CXXC_M-sc-2011-11-09T13:40:32Z-2411

text: house mouse

text: Mus musculus

text: Mus musculus


text: recombinant CXXC from mMBD1

text: Cerebellum

text: Mus musculus

text: SC

text: public

text: m_Cerebellum_CXXC_M-sc-2011-11-09T13:40:33Z-2412

text: house mouse

text: Mus musculus

text: Mus musculus


text: recombinant CXXC from mMBD1

text: Cerebellum

text: Mus musculus

text: SC

text: public

text: m_Cerebellum_CXXC_M-sc-2011-11-09T13:40:33Z-2413

text: house mouse

text: Mus musculus

text: Mus musculus


text: Cd4+ cells

characteristic: ArrayExpress-CellType

text: recombinant CXXC from mMBD1

text: Mus musculus

text: SC

text: public

text: m_CD4_CXXC_M-sc-2011-11-09T13:40:34Z-2414

text: house mouse

text: Mus musculus

text: Mus musculus


text: Cd4+ cells

text: recombinant CXXC from mMBD1

text: Mus musculus

text: SC

text: public

text: m_CD4_CXXC_M-sc-2011-11-09T13:40:35Z-2415

text: house mouse

text: Mus musculus

text: Mus musculus


text: Th1 cells

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_Th1_H3K4me3_P-sc-2011-11-09T13:40:37Z-43051

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Th1 cells

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_Th1_H3K4me3_P-sc-2011-11-09T13:40:38Z-43052

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: B cells (CD19+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_Bcell_H3K4me3_P-sc-2011-11-09T13:40:39Z-43053

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: B cells (CD19+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_Bcell_H3K4me3_P-sc-2011-11-09T13:40:40Z-43054

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Dendritic cells (Cd11c+ sorted)

text: Anti H3K4me3 Millipore 07-473

text: Mus musculus

text: SC

text: public

text: m_DC_H3K4me3_P-sc-2011-11-09T13:40:40Z-43055

text: house mouse

text: Mus musculus

text: DNA isolated from ChIP

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_532B3_-sc-2011-10-17T17:51:14Z-1289878

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_749N11_-sc-2011-10-17T17:51:16Z-1289881

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_2342P3_-sc-2011-10-17T17:51:19Z-1289884

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: RP23_133O13_-sc-2011-10-17T17:51:21Z-1289887

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: RP23_300N10_-sc-2011-10-17T17:51:23Z-1289890

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: CH36_229A17_-sc-2011-10-17T17:51:25Z-1289893

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: RP24_367H23_-sc-2011-10-17T17:51:29Z-1289899

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_1168E14_-sc-2011-10-17T17:51:31Z-1289902

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_1629C9_-sc-2011-10-17T17:51:33Z-1289905

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_1871C15_-sc-2011-10-17T17:51:36Z-1289908

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_2374O5_-sc-2011-10-17T17:51:38Z-1289911

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_2835B24_-sc-2011-10-17T17:51:40Z-1289914

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: CH36_95K7_-sc-2011-10-17T17:51:43Z-1289917

text: house mouse

text: Mus musculus

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: WI1_1638E24_-sc-2011-10-17T17:51:45Z-1289920

text: house mouse

text: Mus musculus

text: Mus musculus


text: Homo sapiens

text: SC

text: public

text: RP11_1083I3_-sc-2011-10-17T17:56:07Z-1289922

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: RP11_759G12_-sc-2011-10-17T17:56:09Z-1289925

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ABC8_41207300F1_-sc-2011-10-17T17:56:14Z-1289931

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ABC9_43968800K15_-sc-2011-10-17T17:56:16Z-1289934

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WI2_2230D19_-sc-2011-10-17T17:56:18Z-1289937

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WI2_3655O14_-sc-2011-10-17T17:56:20Z-1289940

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WI2_653L2_-sc-2011-10-17T17:56:22Z-1289943

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ABC8_40987200L14_-sc-2011-10-17T17:56:24Z-1289946

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: CH17_316P2_-sc-2011-10-17T17:56:28Z-1289952

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: WI2_2343O7_-sc-2011-10-17T17:56:31Z-1289955

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: CH17_61I6_-sc-2011-10-17T17:56:33Z-1289958

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ABC7_42468100I19_-sc-2011-10-17T17:56:35Z-1289961

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

text: SC

text: public

text: ABC8_5698149H10_-sc-2011-10-17T17:56:37Z-1289964

text: human

text: Homo sapiens

text: Homo sapiens


text: diseased

characteristic: ArrayExpress-DiseaseState

text: cancer

characteristic: ArrayExpress-Phenotype

text: Mus Musculus

text: cancer

characteristic: EGA-Disease

text: SC

text: public

text: 3__SB_induced_tumour_3-sc-2011-11-07T15:37:04Z-1297061

text: house mouse

text: Mus musculus

text: transposon-induced tumour

text: Mus musculus


text: diseased

text: cancer

text: Mus Musculus

characteristic: ArrayExpress-Species

text: cancer

text: SC

text: public

text: 3__SB_induced_tumour_5-sc-2011-11-07T15:37:06Z-1297063

text: house mouse

characteristic: common name

text: Mus musculus

text: transposon-induced tumour

characteristic: sample description

text: Mus musculus