text: C57BL/6N / C57BL/6N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


status: PUBLIC

tag: attribute

characteristic: ArrayExpress-DevelopmentalStage

text: Nup85 / C57BL/6N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Nup85 / Nup85

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: female

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: C57BL/6N / C57BL/6N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


text: C57BL/6N / C57BL/6N

text: Whole embryo

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


text: Nup85 / C57BL/6N

text: Whole embryo

text: male

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


text: Nup85 / C57BL/6N

text: Whole embryo

text: male

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT

characteristic: sample description

text: Mus musculus

characteristic: strain


text: Nup85 / C57BL/6N

characteristic: ArrayExpress-Genotype

text: Whole embryo

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TAGAACAC) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


characteristic: ArrayExpress-DevelopmentalStage

text: Nup85 / C57BL/6N

text: Whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: 3' end enriched mRNA from mutant mouse embryo of allele Nup85tm1a(EUCOMM)Wtsi, see http://www.sanger.ac.uk/mouseportal/search?query=Nup85 more information. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. A 8 base indexing sequence (TCATCCTA) is bases 13 to 20 of read 1 followed by CG and polyT

text: Mus musculus


text: 12.2 weeks

characteristic: ArrayExpress-Age

text: Lin- bone marrow cells

characteristic: ArrayExpress-CellType

text: HEMI

text: wild type

characteristic: ArrayExpress-Phenotype

text: male

text: Mus Musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Lin- bone marrow cells

text: Mus musculus


text: 12.2 weeks

text: Lin- bone marrow cells

text: WT

text: wild type

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Lin- bone marrow cells

characteristic: sample description

text: Mus musculus


text: 12.2 weeks

text: Lin- bone marrow cells

text: WT

characteristic: ArrayExpress-Genotype

text: wild type

text: female

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Lin- bone marrow cells

text: Mus musculus


text: 12.2 weeks

characteristic: ArrayExpress-Age

text: Lin- bone marrow cells

text: KO

text: wild type

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Lin- bone marrow cells

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: INRA

text: public

text: baker's yeast

text: Industrial wine yeast

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: parental wine strain

characteristic: title


characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: baker's yeast

characteristic: culture collection

text: Experimentally evolved variant ECA2 (70 generations)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

text: Experimentally evolved variant ECB2 (180 generations)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

characteristic: common name

text: Experimentally evolved variant ECC2 (240 generations)

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Evolved strain


characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant ECA5 (70 generations)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant ECB5 (180 generations)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant ECC5 (240 generations)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved derivative of EC1118 grown on unselective YPD medium for 300 generations

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: Plasmodium falciparum

characteristic: ArrayExpress-Species

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: 20 weeks

characteristic: ArrayExpress-Age

text: OMP-GFP (+/-)

characteristic: ArrayExpress-Genotype

text: Olfactory epithelium

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: library from single OSNs

characteristic: sample description

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS (IVIA)

text: sweet orange

text: open flower

characteristic: description

text: Citrus sinensis

text: Citrus sinensis

text: Navelina open flower

characteristic: title


text: INRA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: baker's yeast

characteristic: common name

text: Experimentally evolved variant for 200 generations, evolution (a)

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Evolved strain


characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant for 250 generations, evolution (a)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant for 300 generations, evolution (a)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant for 200 generations, evolution (b)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant for 250 generations, evolution (b)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: Experimentally evolved variant for 300 generations, evolution (b)

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Evolved strain


text: INRA

text: public

text: baker's yeast

text: The twenty most glycerol producing segregants [K300.1(b) spores]

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: High glycerol producing variants


text: INRA

text: public

text: baker's yeast

text: The twenty least glycerol producing segregants [K300.1(b) spores]

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Low glycerol producing variants


text: University of Manchester

text: public

tag: Namespace:University of Manchester

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: Protocols: Rex1GFPd2 mouse ES cells were maintained in NDiff N2B27 media in the presence of CHIR99021 and PD0325901 as described in Yang et al., 2012. For time series of differentiation, the media containing inhibitor was removed and replaced with NDiff N2B27 media as time lindicated. ES cells were cross-linked as described in Lee et al., 2006. Yang SH, Kalkan T, Morrisroe C, Smith A, Sharrocks AD. (2012) PLoS Genet. 2012;8(12):e1003112. A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell differentiation. Lee TI, Johnstone SE, Young RA. (2006) Nat Protoc. 1(2):729-48. Chromatin immunoprecipitation and microarray-based analysis of protein location. ChIP-seq was performed as described in Lee et al., 2006, with the following modifications. The crosslinked material was sheared by water bath sonication using bio-rupter for 16 mins, at high level, 30 secs on/ 30 secs off, 4 ⁰C. The size of sheared DNA fragments was between 100 bp to 500 bp, with median size around 300 bp. Immunoprecipitation was performed by incubating 1.5×107cells with 2.5 µg of Otx2 antibodies (ProteinTech Group, Inc; 13497-1-AP) cross-linked to dynabeads protein A (Invitrogen), overnight at 4 ⁰C. Lee TI, Johnstone SE, Young RA. (2006) Nat Protoc. 1(2):729-48. Chromatin immunoprecipitation and microarray-based analysis of protein location.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male

characteristic: sex

type: has member


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Manchester

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Protocols: Rex1GFPd2 mouse ES cells were maintained in NDiff N2B27 media in the presence of CHIR99021 and PD0325901 as described in Yang et al., 2012. For time series of differentiation, the media containing inhibitor was removed and replaced with NDiff N2B27 media as time lindicated. ES cells were cross-linked as described in Lee et al., 2006. Yang SH, Kalkan T, Morrisroe C, Smith A, Sharrocks AD. (2012) PLoS Genet. 2012;8(12):e1003112. A genome-wide RNAi screen reveals MAP kinase phosphatases as key ERK pathway regulators during embryonic stem cell differentiation. Lee TI, Johnstone SE, Young RA. (2006) Nat Protoc. 1(2):729-48. Chromatin immunoprecipitation and microarray-based analysis of protein location. ChIP-seq was performed as described in Lee et al., 2006, with the following modifications. The crosslinked material was sheared by water bath sonication using bio-rupter for 45 mins, at high level, 30 secs on/ 30 secs off, 4 ⁰C. The size of sheared DNA fragments was between 100 bp to 600 bp, with median size around 300 bp. Immunoprecipitation was performed by incubating 0.75×107cells with 10 µg of H3K27Ac and H3K4me1 antibodies (Abcam; ab8895 and ab4729), respectively, cross-linked to dynabeads protein A (Invitrogen), overnight at 4 ⁰C. Lee TI, Johnstone SE, Young RA. (2006) Nat Protoc. 1(2):729-48. Chromatin immunoprecipitation and microarray-based analysis of protein location.

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: male


text: adult

characteristic: ArrayExpress-DevelopmentalStage

text: earclip

characteristic: ArrayExpress-OrganismPart

text: mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: genomic DNA from earclips

characteristic: sample description

text: Mus musculus

characteristic: strain


text: plasmodium falciparum

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Entomology, Nanjing Agricultural University

text: 1 day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: two-spotted spider mite

text: Protocols: Mites used in this study were reared on a leafleaves of the common bean (Phaseolus vulgaris L.) placed on a water-saturated sponge mat in Petri dishes (dia. 9) at 25 degree Celsius, 60 percent relative humility. and under L16-D8 conditions. Both Wolbachia infected and uninfected Wolbachia lines were established. RNA was extracted using the Trizol protocol A total amount of 3 microgramme total RNA per sample was used as input material for the small RNA library. Sequencing libraries were generated using TruSeq small RNA Sample Pre Kit (Illumina) following manufacturer's recommendations and index codes were added to attribute sequences to each sample. Briefly, 3' ends adaptor and 5' ends adaptor were successively ligated to 3' end and 5' end of the RNA sample. Reverse transcription followed by PCR is used to create cDNA constructs based on the small RNA ligated with 3? and 5? adapters. PCR products were purified on a 6% polyacrylamide gel (145V, 60 min). DNA fragments corresponding to 130~160 bp (the length of small noncoding RNA plus the 3' and 5' adaptors) were recovered and dissolved in 8 microlitre elution buffer. At last, library quality was assessed on the Agilent Bioanalyzer 2100 system using DNA High Sensitivity Chips. The clustering of the index-coded samples was performed on a cBot Cluster Generation System using TruSeq SR Cluster Kit v3-cBot-HS (Illumia) according to the manufacturer's instructions. After cluster generation, the library preparations were sequenced on an Illumina Hiseq 2000 platform and 50bp single-end reads were generated (Novogene Experimental Department).

characteristic: description

text: adult

characteristic: developmental stage

text: uninfected

characteristic: infect

text: Tetranychus urticae

characteristic: organism

text: Tetranychus urticae

text: Normal

characteristic: phenotype

text: Tetranychus urticae

text: male

characteristic: sex

text: fresh specimen

characteristic: specimen with known storage state

text: MU

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Entomology, Nanjing Agricultural University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 1 to 3 day

text: ArrayExpress

text: two-spotted spider mite

text: adult

text: uninfected

text: Tetranychus urticae

text: Tetranychus urticae

text: Normal

text: Tetranychus urticae

text: female

text: fresh specimen

text: FU


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 1 to 3 day

text: ArrayExpress

text: two-spotted spider mite

characteristic: common name

text: adult

text: Wolbachia infected

text: Tetranychus urticae

text: Tetranychus urticae

text: Fecundity increase

text: Tetranychus urticae

text: female

text: fresh specimen

text: FI


characteristic: ENA-LAST-UPDATE

text: public

text: 1 day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: two-spotted spider mite

characteristic: description

text: adult

characteristic: developmental stage

text: Wolbachia infected

text: Tetranychus urticae

text: Tetranychus urticae

text: Infected male mated with uninfected female can induce cytoplasmic incompatibility

text: Tetranychus urticae

text: male

text: fresh specimen

text: MI


text: EpiSC

characteristic: ArrayExpress-CellType

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: RNA from EpiSC

characteristic: sample description

text: Mus musculus


E-MTAB-2696:Foxc1 IIBA IP

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Manchester

text: public

text: E-MTAB-2696:Foxc1 IIBA IP

text: ArrayExpress

text: house mouse

text: Protocols: The preparation of the material was as described in Kutejova et al., 2008. Second branchial arches are dissected (the whole tissue), crosslinked and frozen in order to pool enough for ChIP. Kutejova E, Engist B, Self M, Oliver G, Kirilenko P, Bobola N. Six2 functions redundantly immediately downstream of Hoxa2. Development. 2008. 135(8):1463-70. PMID: 18321982. MinElute PCR purification kit (Qiagen) ChIP-seq was performed as described in Donaldson et al., 2012, using 20 ug of Foxc1 antibody (Abcam). Donaldson I, Amin S, Hensman J, Kutejova E, Rattray M, Lawrence N, Hayes A, Ward C and Bobola N. Genome-wide occupancy links Hoxa2 to Wnt-beta-catenin signaling in mouse embryonic development. Nucleic Acids Res. 2012. 40(9):3990-4001.

text: embryonic day 11.5

text: Mus musculus

text: Mus musculus

text: second branchial arch

characteristic: organism part

text: Mus musculus

text: mixed sex

characteristic: sex

text: Foxc1 IIBA IP

characteristic: title


E-MTAB-2696:Foxc1 IIBA input

text: University of Manchester

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-2696:Foxc1 IIBA input

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 11.5

text: Mus musculus

text: Mus musculus

text: second branchial arch

text: Mus musculus

text: mixed sex

text: Foxc1 IIBA input


text: 10 weeks

characteristic: ArrayExpress-Age

text: Brain Tissue mainly neuronal

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: gDNA from hippocampus BS treated replicate 1

text: Mus musculus

characteristic: strain


text: 10 weeks

text: Brain Tissue mainly neuronal

characteristic: ArrayExpress-CellType

text: Adult

text: Wildtype

text: Brain

text: wildtype

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: gDNA from cortex BS treated replicate 1

characteristic: sample description

text: Mus musculus


text: 10 weeks

characteristic: ArrayExpress-Age

text: Brain Tissue mainly neuronal

text: Adult

text: Wildtype

text: Brain

text: wildtype

text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: gDNA from cerebellum BS treated replicate 1

text: Mus musculus


text: 10 weeks

text: Brain Tissue mainly neuronal

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: gDNA from hippocampus BS treated replicate 2

text: Mus musculus


text: 10 weeks

text: Brain Tissue mainly neuronal

characteristic: ArrayExpress-CellType

text: Adult

text: Wildtype

text: Brain

text: wildtype

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: gDNA from cortex BS treated replicate 2

text: Mus musculus

characteristic: strain


text: 10 weeks

characteristic: ArrayExpress-Age

text: Brain Tissue mainly neuronal

text: Adult

text: Wildtype

text: Brain

text: wildtype

text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

characteristic: organism

text: gDNA from cerebellum BS treated replicate 2

characteristic: sample description

text: Mus musculus


text: 10 weeks

text: Brain Tissue mainly neuronal

text: Adult

characteristic: ArrayExpress-DevelopmentalStage

text: Wildtype

characteristic: ArrayExpress-Genotype

text: Brain

characteristic: ArrayExpress-OrganismPart

text: wildtype

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: gDNA from hippocampus BS treated replicate 3

text: Mus musculus


text: 10 weeks

text: Brain Tissue mainly neuronal

characteristic: ArrayExpress-CellType

text: Adult

text: Wildtype

text: Brain

text: wildtype

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: gDNA from cortex BS treated replicate 3

text: Mus musculus


text: 10 weeks

characteristic: ArrayExpress-Age

text: Brain Tissue mainly neuronal

text: Adult

text: Wildtype

text: Brain

text: wildtype

text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: common name

text: Mus musculus

text: gDNA from cerebellum BS treated replicate 3

text: Mus musculus

characteristic: strain


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


name: E-MTAB-2682:PolyA Selected U2AF1 ab siRNA Depletion Replicate 1

text: University of Southampton

text: public

characteristic: SRA accession

tag: Namespace:University of Southampton

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: Cell lines were grown under standard conditions in DMEM supplemented with 10% (v/v) bovine calf serum (Gibco BRL) Transfections of small interfering RNAs (siRNAs) were carried out in 6- or 12- well plates using jetPRIME (Polyplus) according to manufacturer's recommendations. The cells received treatment with siRNA twice - 24h post seeding, and 48h post seeding when splitting into a new plate. PolyA library selection was performed using NEBNext poly(A) mRNA magnetic isolation module (E7490L) according to the manufacturer's specifications.

characteristic: description

text: PolyA+

characteristic: library selection

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


name: E-MTAB-2682:Ribosomal depletion U2AF1 a siRNA Depleted Replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Southampton

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: Protocols: Cell lines were grown under standard conditions in DMEM supplemented with 10% (v/v) bovine calf serum (Gibco BRL) Transfections of small interfering RNAs (siRNAs) were carried out in 6- or 12- well plates using jetPRIME (Polyplus) according to manufacturer's recommendations. The cells received treatment with siRNA twice - 24h post seeding, and 48h post seeding when splitting into a new plate. A human/mouse/rat Ribo-Zero rRNA Removal Kit (Cambio/Epicentre) was used according to the manufacturer's specifications.

text: Ribosomal Depletion

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:Ribosomal depletion U2AF1 b siRNA Depleted Replicate 2

characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: Ribosomal Depletion

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:Ribosomal depletion U2AF1 a SSO Depleted Replicate 1

text: University of Southampton

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Cell lines were grown under standard conditions in DMEM supplemented with 10% (v/v) bovine calf serum (Gibco BRL) Transfections of splice-switching oligonucletides (SSOs) targeting mutually exclusive U2AF1 exons were carried out in 6- or 12- well plates using jetPRIME (Polyplus) according to manufacturer's recommendations. The cells received treatment with SSO twice - 24h post seeding, and 48h post seeding when splitting into a new plate. A human/mouse/rat Ribo-Zero rRNA Removal Kit (Cambio/Epicentre) was used according to the manufacturer's specifications.

text: Ribosomal Depletion

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:Ribosomal depletion Control Replicate 2

text: University of Southampton

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

text: Protocols: Cell lines were grown under standard conditions in DMEM supplemented with 10% (v/v) bovine calf serum (Gibco BRL) A human/mouse/rat Ribo-Zero rRNA Removal Kit (Cambio/Epicentre) was used according to the manufacturer's specifications.

text: Ribosomal Depletion

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

text: Ribosomal depletion Control Replicate 2


name: E-MTAB-2682:PolyA Selected U2AF1 a siRNA Depletion Replicate 1

text: University of Southampton

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: PolyA+

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:Ribosomal depletion U2AF1 a siRNA Depleted Replicate 2

text: University of Southampton

text: public

text: ArrayExpress

text: human

characteristic: description

text: Ribosomal Depletion

characteristic: library selection

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:Ribosomal depletion Control Replicate 1

text: University of Southampton

text: public

text: ArrayExpress

text: human

text: Ribosomal Depletion

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Ribosomal depletion Control Replicate 1

characteristic: title


name: E-MTAB-2682:PolyA Selected U2AF1 b siRNA Depletion Replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: ArrayExpress

text: human

text: PolyA+

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:PolyA Selected U2AF1 b siRNA Depletion Replicate 2

characteristic: ENA-LAST-UPDATE

text: University of Southampton

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

text: PolyA+

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:PolyA Selected Control Replicate 2

characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

text: Protocols: Cell lines were grown under standard conditions in DMEM supplemented with 10% (v/v) bovine calf serum (Gibco BRL) PolyA library selection was performed using NEBNext poly(A) mRNA magnetic isolation module (E7490L) according to the manufacturer's specifications.

text: PolyA+

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: PolyA Selected Control Replicate 2


name: E-MTAB-2682:PolyA Selected U2AF1 ab siRNA Depletion Replicate 2

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: PolyA+

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:PolyA Selected Control Replicate 1

text: University of Southampton

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: common name

text: PolyA+

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: PolyA Selected Control Replicate 1


name: E-MTAB-2682:Ribosomal depletion U2AF1 b siRNA Depleted Replicate 1

text: University of Southampton

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

text: Ribosomal Depletion

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:Ribosomal depletion U2AF1 b SSO Depleted Replicate 1

text: University of Southampton

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Ribosomal Depletion

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


name: E-MTAB-2682:PolyA Selected U2AF1 a siRNA Depletion Replicate 2

text: University of Southampton

text: public

text: ArrayExpress

text: human

characteristic: description

text: PolyA+

characteristic: library selection

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


text: public

tag: Namespace:Department of Biochemistry, University of Cambridge, UK

text: ArrayExpress

text: fission yeast

text: Protocols: Cells were grown in EMM (Moreno et al., 1991, Methods Enzymol. 194, 795-823) at 32C, pelleted at 4C and frozen in liquid N2 RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27, and polyadenylated RNA was ourified using oligo(dT) magnetic beads (Life Technologies) following the manufacturer's protocol. Total RNA was fragmented by mixing 20 ul of RNA with 20 ul of 2X alkaline fragmentation buffer (2 mM EDTA, 100 mM Na2CO3) followed by incubation for 15 minutes at 95C. Samples were run on 15% TBE-urea gels (Life Technologies), and fragments of around 28 nucleotides were extracted from the gel. RNA samples were purified using Purelink RNA microcolumns (Life Technologies) as described by the manufacturer, except that the samples were initially passed through the column in the presence of 70% ethanol (to favour binding of small RNAs). Samples were then treated with poly nucleotide kinase (PNK, Fermentas) and polyadenylated using 12 units of poly-(A) polymerase (NEB) at 37C for 45 minutes. Reverse transcription reactions were performed using custom primers containing an anchored oligo(dT), 4 nucleotides of known sequence used for multiplexing, and 5 random nucleotides that serve as unique molecular identifiers. Reverse transcription products were gel-purified and circularised using CircLigase II (Epicentre), and amplified by PCR with custom library primers for 12 or 15 cycles.

characteristic: genotype

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Biochemistry, University of Cambridge, UK

text: public

text: ArrayExpress

text: fission yeast

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe

text: Schizosaccharomyces pombe


text: Trophoblast stem cell

characteristic: ArrayExpress-CellType

characteristic: ArrayExpress-GrowthCondition

text: Normal

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

text: Fgf4 depdendent

characteristic: ArrayExpress-Treatment

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: RNA from cell culture

characteristic: sample description

text: Mus musculus


characteristic: External Id

text: University of Manchester

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: osteosarcoma

characteristic: cell type

text: human

characteristic: common name

text: Protocols: After reverse cross-link and protein digestion with Proteinase K (Roche), DNA was purified using Qiaquick, PCR purification kit (Qiagen) following the manufacturer's instructions. The stable cell lines were grown in DMEM supplement with 10% foetal bovine serum. Media contained 100 micro-g/ml of Hygromycin. Expression of ZMYM2(WT) or ZMYM2(SIM2mut) was induced by treating the cells for 48 hours with 100 ng/ml [for ZMYM2(WT)] or 50 ng/ml [for ZMYM2(SIM2mut)] doxycycline (Sigma). Expression of FOXO3 was induced by treating the cells for 48 hours with 1 ng/ml doxycycline (Sigma). Cells were double cross-linked with dimethyl adipimidate (DMA) for 20 minutes and subsequently with Formaldehyde for 10 minutes. ChIP-seq was performed as described in Schmidt et al., 2009, using 60 x 106 U2OS-ZMYM2(WT) or U2OS-ZMYM2(SIM2mut). Immuno-precipitation was performed overnight at 4 degrees C by incubating the shared DNA-protein complex with 6 ug of anti-Flag (Sigma) or control IgG (Millipore) antibodies previously coupled to Dynabeads protein G (Invitrogen). Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT. (2009) ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48: 240-248. Note: paired-end sequencing libraires were created in this experiment but only the forward (R1) reads are available in this submission. The 'LIBRARY_LAYOUT' attribute is therefore set to be 'SINGLE' rather than 'PAIRED'.

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex


text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with Poly I:C (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: S1_WT_E14_Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with LPS (Toll-like receptor agonist)LPS

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with CpG (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with Tri-Dap (Toll-like receptor agonist) + LPS 1ng/ml

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with IFNg (cytokine) 5 days

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with IL-4 5 day

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Unstimulated Wild type Embryonic Stem Cell Derived Macrophages 4hr

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with Salmonella moi 50 4 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with Influenza 4 hr

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Wild type Embryonic Stem Cell Derived Macrophages stimulated with Influenza 24 hr

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Poly I:C (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with LPS (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with CpG (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Tri-Dap (Toll-like receptor agonist) + LPS 1ng/ml

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with IFNg (cytokine) 5 days

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with IL-4 5 days

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Unstimulated IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages 4 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Salmonella moi 50 4 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 IRAK-1 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Influenza 4 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Influenza 24 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Poly I:C (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with LPS (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with CpG (Toll-like receptor agonist)

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Tri-Dap (Toll-like receptor agonist) + LPS 1ng/ml

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with IFNg (cytokine) 5 days

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with IL-4 5 days

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1 Unstimulated TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages 4 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Salmonella moi 50 4 hours

text: Mus musculus


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Screen 1TRAF-2 Knock-out Embryonic Stem Cell Derived Macrophages stimulated with Influenza 4 hours

text: Mus musculus


text: 12.4 weeks

characteristic: ArrayExpress-Age

text: HEMI

characteristic: ArrayExpress-Genotype

text: Lin- bone marrow cells

characteristic: ArrayExpress-OrganismPart

text: wt

characteristic: ArrayExpress-Phenotype

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Lin- bone marrow cells

text: Mus musculus


text: 12.4 weeks

text: Wildtype

text: Lin- bone marrow cells

text: wt

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Lin- bone marrow cells

characteristic: sample description

text: Mus musculus


text: 12.2 weeks

text: HEMI

text: Lin- bone marrow cells

text: wt

text: male

text: Mus Musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Lin- bone marrow cells

text: Mus musculus


text: 12.2 weeks

text: Wildtype

text: Lin- bone marrow cells

text: wt

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Lin- bone marrow cells

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: TGAC

text: public

text: TGAC

characteristic: broker name

text: rape

text: Oilseed rape line 'POSH MC 169'

characteristic: description

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line F1 Tapidor x Ningyou 7

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line TN145 from Tapidor x Ningyou 7

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Yudal'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Drakkar'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Grizzly'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Lesira'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Shen-Li Jutsaj'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Brutor'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Chembere Dzagumhana'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Cubs Root'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Evvin'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Fido'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Global'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Helios'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Janetzkis Schlesicher'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Kromerska'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Aberdeenshire Prize'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Mestnij'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Michinoko'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Sarepta'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Surpass 400-024'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Brauner Schnittkohl'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Tequila x Aragon'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Tribune'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Victor'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Couve nabica'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Devon Champion'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Fortin Family'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Groene Groninger Snijmoes'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Guelzower'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Jaune a Collet Vert'

text: Brassica napus

text: Brassica napus


text: TGAC

text: public

text: TGAC

text: rape

text: Oilseed rape line 'Judzae'

text: Brassica napus

text: Brassica napus


E-MTAB-2717:P16V Input

text: EBI

text: public

text: E-MTAB-2717:P16V Input

text: ArrayExpress

text: baker's yeast

text: Protocols: Yeast cells were grown at 30 degrees C, shaking at 200 rpm to exponential phase in YPD medium (1 % yeast extract (Difco), 1 % bactopeptone supplemented with 2 % glucose). Cells were grown overnight in 5 ml cultures before dilution to 0.2 OD600 (0.5 x 107 cells/ml) in the appropriate volume of fresh media. Cells were harvested during exponential growth at 0.5 OD600 (1.25 x 107 cells/ml) by centrifugation (3000 rpm, 5 min). Cells grown to OD600 0.5 in 50 ml of appropriate media were fixed with 1 % formaldehyde in 45 ml PBS for 30 min at 22 degrees C followed by addition of glycine to 125 mM for 5 min. Cell pellets were collected by centrifugation (3000 rpm, 5 min) before washing twice with 10 ml cold PBS. Cells were resuspended in 500 ul cold FA-150 buffer (10 mM HEPES pH 7.9, 150 mM NaCl, 0.1 % SDS, 0.1 % sodium deoxycholate, 1 % Triton X-100) and broken using 1 ml glass beads on a MagnaLyser (Roche) at 4 degrees C. Sample volume was increased to 2 ml with FA-150 buffer before shearing of the fixed chromatin by sonication using a biorupter (Diagenode, 30 min, 1 min on, 20s off, medium setting). Chromatin was cleared by centrifugation (10 000 rpm, 15 min, 4 degrees C) and incubated with antibody (H3 Millipore/07-690 1:40 dilution, H3K4me3 Millipore/05-745R 1:40 dilution) in 1.5 ml siliconised Eppendorf tubes for 15-20 h rotating at 4 degrees C. Bound chromatin was immunoprecipitated for 90 min at 22 degrees C with 50 ul protein A-Sepharose pre-blocked with sonicated salmon sperm DNA. Beads and attached chromatin were pelleted by centrifugation (2600 rpm, 1 min) and washed with TSE-150 buffer (20 mM Tris-Cl pH 8.0, 150 mM NaCl, 2 mM EDTA, 0.1 % SDS, 1 % Triton X-100) for 3 min, TSE-500 buffer (20 mM Tris-Cl pH 8.0, 500 mM NaCl, 2 mM EDTA, 0.1 % SDS, 1 % Triton X-100) for 3 min, LiCl buffer (0.25 M LiCl, 10 mM Tris-Cl pH 8.0, 1 mM EDTA, 1 % dioxycholate, 1 % NP-40) for 15 min and twice with TE, all at 22 degrees C. After washing, chromatin was eluted from the beads for 30 min at 65 degrees C with elution buffer (0.1 M NaHCO3, 1 % SDS). Addition of 350 mM NaCl and incubation for 3 h at 65 degrees C reversed the cross-links before treatment of samples with RNase A for 1 h at 37 degrees C and proteinase K overnight at 65 degrees C. DNA was purified using a PCR-purification kit (Qiagen). ChIP DNA was prepared for sequencing by blunting the DNA with a mixture of T4 DNA polymerase, Klenow DNA polymerase, and T4 PNK (NEB) according to the manufacturer's instructions. dA overhangs were then added and Illumina adapters ligated. Adapter-ligated DNA was subject to 18 cycles of PCR before size selection by agarose gel electrophoresis. Amplified DNA was purified using the Qiaquick gel extraction kit (Qiagen). The purified DNA was quantified both with an Agilent Bioanalyzer and Invitrogen Qubit.

text: MATa his3-delta200 leu2-delta0 lys2-delta0 trp1-delta63 ura3-delta0 met15-delta0 can1::MFA1pr-HIS3 hht1-hhf1::NatMX4 hht2-hhf2::[HHTS P16V-HHFS-KanMX6]-URA3

characteristic: genotype

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: P16V Input

characteristic: title


E-MTAB-2717:Wild-type H3 levels

characteristic: ENA-LAST-UPDATE

text: EBI

text: public

text: E-MTAB-2717:Wild-type H3 levels

text: ArrayExpress

text: baker's yeast

text: MATa his3-delta200 leu2-delta0 lys2-delta0 trp1-delta63 ura3-delta0 met15-delta0 can1::MFA1pr-HIS3 hht1-hhf1::NatMX4 hht2-hhf2::[HHTS-HHFS]-URA3

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Wild-type H3 levels


E-MTAB-2717:Wild-type H3K4me3 levels

characteristic: External Id

text: EBI

text: public

text: E-MTAB-2717:Wild-type H3K4me3 levels

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Wild-type H3K4me3 levels


E-MTAB-2717:P16V H3K4me3 levels

text: EBI

characteristic: INSDC center name

text: public

text: E-MTAB-2717:P16V H3K4me3 levels

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: P16V H3K4me3 levels


E-MTAB-2717:P16V H3 levels

text: EBI

text: public

text: E-MTAB-2717:P16V H3 levels

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: P16V H3 levels


E-MTAB-2717:Wild-type Input

text: EBI

text: public

text: E-MTAB-2717:Wild-type Input

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Wild-type Input


E-MTAB-2717:K14A H3K4me3 levels

text: EBI

text: public

text: E-MTAB-2717:K14A H3K4me3 levels

text: ArrayExpress

text: baker's yeast

text: MATa his3-delta200 leu2-delta0 lys2-delta0 trp1-delta63 ura3-delta0 met15-delta0 can1::MFA1pr-HIS3 hht1-hhf1::NatMX4 hht2-hhf2::[HHTS K14A-HHFS]-URA3

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K14A H3K4me3 levels


E-MTAB-2717:K14A H3 levels

text: EBI

text: public

text: E-MTAB-2717:K14A H3 levels

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K14A H3 levels


E-MTAB-2717:K14A Input

text: EBI

text: public

text: E-MTAB-2717:K14A Input

text: ArrayExpress

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: K14A Input


text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: mESC

characteristic: sample description

text: Mus musculus


text: Plasmodium falciparum

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Danio rerio

text: mixed

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ZMP_phenotype_58_1_phenotypic_1-sc-2011425

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TGCTGATA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed

characteristic: strain


text: Danio rerio

text: mixed

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_2-sc-2011426

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TAGACGGA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_3-sc-2011427

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TGTGAAGA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_4-sc-2011428

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TCTCTTCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_5-sc-2011429

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TTGTTCCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_6-sc-2011430

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TGAAGCCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_7-sc-2011431

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TACCACCA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_8-sc-2011432

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (TGCGTGAA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_9-sc-2011433

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GGTGAGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_10-sc-2011434

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GATCTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_11-sc-2011435

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GTGTCCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_phenotypic_12-sc-2011436

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GACGGATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_1-sc-2011437

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_2-sc-2011438

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GGTCGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_3-sc-2011439

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_4-sc-2011440

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_5-sc-2011441

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_6-sc-2011442

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_7-sc-2011443

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_8-sc-2011444

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_9-sc-2011445

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_10-sc-2011446

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_11-sc-2011447

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_58_1_non_phenotypic_12-sc-2011448

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 58 clutch 1. A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph58

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_1-sc-2011449

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (CGATGTTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_2-sc-2011450

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TTAGGCAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_3-sc-2011451

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGACCACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_4-sc-2011452

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (GCCAATGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_5-sc-2011453

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (CAGATCTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_6-sc-2011454

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (ACTTGATG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_7-sc-2011455

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TAGCTTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_8-sc-2011456

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (GGCTACAG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_9-sc-2011457

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (CTTGTACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_10-sc-2011458

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGGTTGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_11-sc-2011459

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TCTCGGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_phenotypic_12-sc-2011460

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically abnormal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TAAGCGTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_1-sc-2011461

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TCCGTCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_2-sc-2011462

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGTACCTT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_3-sc-2011463

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TCTGCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_4-sc-2011464

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGATACGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_5-sc-2011465

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGCATAGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_6-sc-2011466

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TTGACTCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_7-sc-2011467

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGCGATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_8-sc-2011468

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TTCCTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_9-sc-2011469

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TAGTGACT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_10-sc-2011470

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TACAGGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_11-sc-2011471

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TCCTCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: ZMP_phenotype_69_1_non_phenotypic_12-sc-2011472

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from a single phenotypically normal embryo from ZMP phenotype 69 clutch 1. A 8 base indexing sequence (TGTGGTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph69

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GCAACATT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GGTCGTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GAATCTGT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GTACATCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped heterozygous embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GAGGTGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped heterozygous embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GCATGGCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped heterozygous embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GTTAGCCT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped heterozygous embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GTCGCTAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped wild type embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GGAATGAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped wild type embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GAGCCAAT) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped wild type embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GCTCCTTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped wild type embryo for dnmt8, allele sa3105,ZMP phenotype 87 clutch 1. A 8 base indexing sequence (GTAAGGTG) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph87

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TGTCTATC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TATGTGGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TTACTCGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TCGTTAGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TACCGAGC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TGTTCTCC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TTCGCACC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TTGCGTAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TCTACGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TGACAGAC) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped homozygous mutant embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TCATCCTA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed


text: Danio rerio

text: mixed

text: SC

text: public

text: zebrafish

text: Danio rerio

text: 3' end enriched mRNA from single genotyped wild type embryo for dnmt4, allele sa15458,ZMP phenotype 88 clutch 1. A 8 base indexing sequence (TGCTGATA) is bases 13 to 20 of read 1 followed by CG and polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph88

text: Danio rerio

text: mixed