text: Institute of Molecular Biology (IMB)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_G305A_rep3

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: late embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Biology (IMB)

characteristic: INSDC center name

text: public

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_G331C_rep1

tag: Namespace:Institute of Molecular Biology (IMB)

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Media from cells growing in a 6-well tissue culture plate was replaced with 1 ml cold PBS and the plate was put on ice. Next, the cells were irradiated once with 150 mJ/cm2 in a Stratalinker 2400 at 254 nm. Then the cells were harvested by scraping and collected by centrifugation at 400xg for 1 min at 4 °C. The supernatant was subsequently removed and the cell pellets were either snap-frozen and stored or immediately subjected to immunoprecipitation. One well of a 6-well tissue culture with 90% confluent cells were each transfected with 2 µg of a the RON wildtype minigene one day prior to harvesting using 20 µg polyethylenimine MW ~ 2500 transfection reagent (Polysciences, Inc.). The RON minigene was cloned into the pcDNA 3.1 (+) vector (Invitrogen). The minigene construct contains a sequence of the MST1R gene including exon 11 together with the complete flanking introns and the constitutive exons 10 and 12 (chr3: 49,933,098 - 49,933,837, GRCh37/hg19). The RON minigene library comprises of approximately 6,000 minigenes with three to four mutations on average per minigene. For the iCLIP experiments, however, we transfected individual minigene variants (a wild type minigene and point mutation plasmids). One well of a 6-well tissue culture with 90% confluent cells were each transfected with 2 µg of a a G305A Mutant RON minigene one day prior to harvesting using 20 µg polyethylenimine MW ~ 2500 transfection reagent (Polysciences, Inc.). Protein-RNA complexes were immunoprecipitated by using 7.5 µg of a polyclonal rabbit anti-HNRNPH antibody from Abcam (AB10374). Then, RNase digestion was performed by adding 10 µl of 1/100 diluted RNase I (Ambion) to each sample. Further processing of the sample including RNA extraction was performed according to a previously published protocol (Sutandy F.R., Hildebrandt A., König J., 2016). cDNA synthesis was carried out using the Superscript III (Life Technologies) reverse transcriptase according to the manufacturer’s protocol. Subsequently, the cDNA was gel-purified and circularized according to a previously published protocol (Sutandy F.R., Hildebrandt A., König J., 2016). Next, the cDNA was PCR-amplified and the products were purified using the MinElute PCR Purification Kit from Qiagen. Finally, DNA fragments of length 150 - 225 bp were isolated using the DNA 500 LabChip Kit from Perkin Elmer according to the manufacturer’s instructions.

characteristic: description

text: late embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: MST1R G331C point mutant minigene construct

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

characteristic: title


text: Institute of Molecular Biology (IMB)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_G331C_rep2

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: late embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Biology (IMB)

characteristic: INSDC center name

text: public

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_G348C_rep1

text: ArrayExpress

text: epithelial cell

text: human

text: late embryo

text: normal

text: MST1R G348C point mutant minigene construct

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


text: Institute of Molecular Biology (IMB)

text: public

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_G348C_rep2

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: late embryo

text: normal

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


text: Institute of Molecular Biology (IMB)

text: public

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_WT_rep1

text: ArrayExpress

text: epithelial cell

text: human

text: late embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: MST1R wild type minigene construct

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens


text: Institute of Molecular Biology (IMB)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_WT_rep2

text: ArrayExpress

text: epithelial cell

text: human

text: late embryo

text: normal

text: MST1R wild type minigene construct

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Biology (IMB)

text: public

text: E-MTAB-62211526894886:iCLIP_hnRNPH_RON_WT_rep3

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: late embryo

text: normal

text: MST1R wild type minigene construct

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens


text: Liver

characteristic: ArrayExpress-PHENOTYPE

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

text: public

text: house mouse

characteristic: common name

text: Male

characteristic: gender

text: Mus musculus

text: Liver

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: Skin

text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

text: Male

text: Mus musculus

characteristic: organism

text: Skin

text: Mus musculus


text: Liver

text: female

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Female

text: Mus musculus

text: Liver

text: Mus musculus

characteristic: title


text: Skin

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Female

text: Mus musculus

text: Skin

text: Mus musculus


text: Tail

characteristic: ArrayExpress-PHENOTYPE

text: female

text: Mus musculus

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Female

text: Mus musculus

text: Tail

text: Mus musculus


text: Spleen

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: Spleen

text: Mus musculus


text: UCC

text: public

characteristic: collection date

text: Comparison of In Situ and Ex Situ microbial biogas upgrading communities, with hydrogen (IS, ES) and CO2 (ES) injection

characteristic: description

text: anaerobic bioreactor

characteristic: environment (biome)

text: gas-fed thermophilic stirred tank

characteristic: environment (feature)

text: grass digestate / digestate liquor

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: biogas fermenter metagenome

text: in situ v. ex situ biogas upgrading

characteristic: project name

text: biogas fermenter metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: in situ v. ex situ


text: synthetic construct

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: synthetic construct

characteristic: common name

text: synthetic construct

characteristic: organism

text: synthetic construct

characteristic: subject id

characteristic: title


text: IZSLER

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: Whole-genome sequencing and Phylogeographic analysis of Salmonella enterica serovar Napoli strains isolated from human cases occurred in Lombardy and Emilia-Romagna, Northern Italy (2012-2014)

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: clinical

characteristic: isolation source

text: 46°10′N 09°52′E

characteristic: lat lon

text: Salmonella enterica subsp. enterica serovar Napoli

text: napoli

characteristic: serovar

text: Whole-genome sequencing of Salmonella enterica serovar Napoli in Lombardy and Emilia-Romagna, Italy


text: Haemonchus contortus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: barber pole worm

text: Haemonchus contortus

text: Haemonchus contortus

text: Haemonchus contortus


text: UL-LS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Lettuce bacterial community

text: bacterium

characteristic: organism

text: bacterium

text: Lettuce

characteristic: title


text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Cells were harvested in TRIzol (Life Technologies) for RNA purification. Cells were maintained on gelatin-coated culture vessels in 2i/LIF, consisting of DMEM:F-12 and Neurobasal media (1:1, Invitrogen) supplemented with N2 (in-house) and B27 (Gibco), L-glutamine and beta-mercaptoethanol, 3μM CHIR99021 and 1μM PD0325901 inhibitors, plus 10ng/ml LIF. Translocation of Mbd3b protein to the nucleus was induced with 4-hydroxytamoxifen added directly to the culture media to a final concentration of 0.4nM for varying times as indicated. RNA was extracted with TRIzol (Life Technologies). Libraries were prepared using the NEXTflex Rapid Directional RNA-seq kit (Bioo Scientific).

characteristic: description

text: embryo

characteristic: developmental stage

text: Mbd3 inducible

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cambridge

text: public

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Protocols: Cells were harvested, washed in ice cold PBS and resuspended in ice cold lysis buffer (10mM Tris-HCl pH7.4, 10mM NaCl, 3mM MgCl2, 0.5% IGEPAL, 150mM spermine and 500mM spermidine) at a concentration of 10^6 cells/ml. 1ml aliquots were centrifuged at 300 × g for 10 min at 4°C and pellets washed in 1ml digestion buffer (10mM Tris-HCl pH7.4, 15mM NaCl, 60mM KCl, 150mM spermine and 500mM spermidine). Cells were maintained on gelatin-coated culture vessels in Glasgow’s modified Eagle’s medium (GMEM) supplemented with 10% fetal calf serum, L-glutamine, sodium pyruvate, beta-mercaptoethanol and 10ng/ml LIF. Translocation of Mbd3b protein to the nucleus was induced with 4-hydroxytamoxifen added directly to the culture media to a final concentration of 0.4nM for varying times as indicated. MNase digestion was carried out in 100ul digestion buffer containing 1mM CaCl and 2000U/ml micrococcal nuclease (New England Biolabs) at 24°C for 15min with shaking. The reaction was terminated using an equal volume of stop buffer (digestion buffer containing 20mM EDTA, 2mM EGTA) before RNase and Proteinase K treatment. Monosomal DNA was isolated by phenol chloroform extraction followed by gel purification. Libraries were prepared using the NEXTflex Rapid DNA-seq kit (Bioo Scientific).

text: Mbd3 inducible

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Protocols: Cells were maintained on gelatin-coated culture vessels in 2i/LIF, consisting of DMEM:F-12 and Neurobasal media (1:1, Invitrogen) supplemented with N2 (in-house) and B27 (Gibco), L-glutamine and beta-mercaptoethanol, 3μM CHIR99021 and 1μM PD0325901 inhibitors, plus 10ng/ml LIF. Translocation of Mbd3b protein to the nucleus was induced with 4-hydroxytamoxifen added directly to the culture media to a final concentration of 0.4nM for varying times as indicated. Fixation was carried out using 1% formaldehyde 10 minutes at room temperature and quenched with 150 mM glycine. DNA was fragmented in the presence of 0.4% SDS using a Bioruptor sonication instrument (Diagenode) producing a size range of between 200 and 300 bp. Libraries were prepared using the NEXTflex Rapid DNA-seq kit.

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: University of Cambridge

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: Mbd3 inducible

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


text: University of Cambridge

text: public

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


text: The University of Heidelberg

text: public

text: E-MTAB-6798:2495sTS.Mouse.Heart.10.5.Male

tag: Namespace:The University of Heidelberg

unit: day

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6798:2581sTS.Mouse.Heart.10.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female


text: The University of Heidelberg

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:2647sTS.Mouse.Heart.10.5.Female

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: male

characteristic: title


text: The University of Heidelberg

text: public

text: E-MTAB-6798:3460sTS.Mouse.Heart.10.5.Female

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:2496sTS.Mouse.Liver.10.5.Male

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6798:2583sTS.Mouse.Liver.10.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female


text: The University of Heidelberg

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:2648sTS.Mouse.Liver.10.5.Female

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


text: The University of Heidelberg

text: public

text: E-MTAB-6798:3461sTS.Mouse.Liver.10.5.Female

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:3248sTS.Mouse.Ovary.10.5.Female

text: ArrayExpress

text: house mouse

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: ovary

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6798:3251sTS.Mouse.Ovary.10.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ovary

text: Mus musculus

text: female

characteristic: strain


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:3279sTS.Mouse.Testis.10.5.Male

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


text: The University of Heidelberg

text: public

text: E-MTAB-6798:3368sTS.Mouse.Testis.10.5.Male

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:2579sTS.Mouse.Brain.10.5.Male

text: ArrayExpress

text: house mouse

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6798:2580sTS.Mouse.Brain.10.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: sex


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:3459sTS.Mouse.Brain.10.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: female

characteristic: strain


text: The University of Heidelberg

text: public

text: E-MTAB-6798:2622sTS.Mouse.Heart.11.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:2938sTS.Mouse.Heart.11.5.Female

text: ArrayExpress

text: house mouse

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6798:2944sTS.Mouse.Heart.11.5.Male

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

characteristic: title


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:3031sTS.Mouse.Heart.11.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female

characteristic: sex


text: The University of Heidelberg

text: public

text: E-MTAB-6798:3360sTS.Mouse.Kidney.11.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male

characteristic: strain


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:3362sTS.Mouse.Kidney.11.5.Male

text: ArrayExpress

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: kidney

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6798:3364sTS.Mouse.Kidney.11.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: kidney

characteristic: organism part

text: Mus musculus

text: female


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:3366sTS.Mouse.Kidney.11.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: female

characteristic: title


text: The University of Heidelberg

text: public

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text: ArrayExpress

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text: The University of Heidelberg

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text: E-MTAB-6798:2626sTS.Mouse.Liver.11.5.Male

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text: house mouse

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text: The University of Heidelberg

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text: E-MTAB-6798:3034sTS.Mouse.Liver.11.5.Male

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text: house mouse

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text: Mus musculus

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text: The University of Heidelberg

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text: E-MTAB-6798:5603sTS.Mouse.Liver.11.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

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text: Mus musculus

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:3365sTS.Mouse.Ovary.11.5.Female

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text: house mouse

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text: Mus musculus

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:3367sTS.Mouse.Ovary.11.5.Female

text: ArrayExpress

text: house mouse

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text: female

characteristic: strain


text: The University of Heidelberg

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text: E-MTAB-6798:3361sTS.Mouse.Testis.11.5.Male

text: ArrayExpress

text: house mouse

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text: Mus musculus

characteristic: organism

text: Mus musculus

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text: The University of Heidelberg

text: public

text: E-MTAB-6798:3363sTS.Mouse.Testis.11.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

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text: embryo

text: wild type genotype

text: Mus musculus

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characteristic: organism part

text: Mus musculus

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:2621sTS.Mouse.Brain.11.5.Male

text: ArrayExpress

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

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text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

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text: E-MTAB-6798:2624sTS.Mouse.Brain.11.5.Male

text: ArrayExpress

text: house mouse

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text: Mus musculus

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characteristic: sex


text: The University of Heidelberg

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characteristic: SRA accession

text: E-MTAB-6798:2937sTS.Mouse.Brain.11.5.Female

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

text: wild type genotype

text: Mus musculus

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text: female

characteristic: strain


text: The University of Heidelberg

text: public

text: E-MTAB-6798:3096sTS.Mouse.Brain.11.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:3036sTS.Mouse.Heart.12.5.Male

text: ArrayExpress

text: house mouse

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6798:3041sTS.Mouse.Heart.12.5.Male

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

characteristic: title


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:3502sTS.Mouse.Heart.12.5.Female

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

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text: Mus musculus

text: female

characteristic: sex


text: The University of Heidelberg

text: public

text: E-MTAB-6798:5027sTS.Mouse.Heart.12.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: Mus musculus

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text: Mus musculus

text: female

characteristic: strain


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:3280sTS.Mouse.Kidney.12.5.Male

text: ArrayExpress

text: house mouse

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text: embryo

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text: wild type genotype

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text: Mus musculus

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text: Mus musculus

text: kidney

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:3282sTS.Mouse.Kidney.12.5.Female

text: ArrayExpress

text: house mouse

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text: Mus musculus

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text: kidney

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text: Mus musculus

text: female


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:3284sTS.Mouse.Kidney.12.5.Male

text: ArrayExpress

text: house mouse

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text: wild type genotype

text: Mus musculus

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text: kidney

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text: male

characteristic: title


text: The University of Heidelberg

text: public

text: E-MTAB-6798:3286sTS.Mouse.Kidney.12.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

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text: wild type genotype

text: Mus musculus

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text: Mus musculus

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characteristic: sex


characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:3037sTS.Mouse.Liver.12.5.Male

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:3039sTS.Mouse.Liver.12.5.Female

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text: house mouse

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text: The University of Heidelberg

characteristic: INSDC first public

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text: E-MTAB-6798:3042sTS.Mouse.Liver.12.5.Male

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text: house mouse

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characteristic: organism part

text: Mus musculus

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text: The University of Heidelberg

text: public

text: E-MTAB-6798:3044sTS.Mouse.Liver.12.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

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text: house mouse

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text: Mus musculus

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:3283sTS.Mouse.Ovary.12.5.Female

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text: house mouse

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characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:3287sTS.Mouse.Ovary.12.5.Female

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text: house mouse

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text: The University of Heidelberg

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text: E-MTAB-6798:3281sTS.Mouse.Testis.12.5.Male

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characteristic: organism

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text: E-MTAB-6798:3285sTS.Mouse.Testis.12.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: house mouse

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: ArrayExpress

text: house mouse

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characteristic: sex


text: The University of Heidelberg

characteristic: INSDC first public

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text: public

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characteristic: SRA accession

text: E-MTAB-6798:3040sTS.Mouse.Brain.12.5.Male

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text: house mouse

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text: wild type genotype

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characteristic: strain


text: The University of Heidelberg

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text: E-MTAB-6798:3043sTS.Mouse.Brain.12.5.Female

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text: house mouse

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:2813sTS.Mouse.Brain.13.5.Female

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text: E-MTAB-6798:2829sTS.Mouse.Brain.13.5.Female

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text: house mouse

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text: E-MTAB-6798:2837sTS.Mouse.Brain.13.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

text: public

text: E-MTAB-6798:2815sTS.Mouse.Heart.13.5.Female

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:2823sTS.Mouse.Heart.13.5.Male

text: ArrayExpress

text: house mouse

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text: Mus musculus

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text: The University of Heidelberg

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6798:2831sTS.Mouse.Heart.13.5.Female

text: ArrayExpress

text: house mouse

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text: The University of Heidelberg

text: public

text: E-MTAB-6798:2839sTS.Mouse.Heart.13.5.Male

characteristic: Submitter Id

characteristic: age

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characteristic: broker name

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:2814sTS.Mouse.Cerebellum.13.5.Female

text: ArrayExpress

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:2822sTS.Mouse.Cerebellum.13.5.Male

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text: E-MTAB-6798:2830sTS.Mouse.Cerebellum.13.5.Female

text: ArrayExpress

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text: E-MTAB-6798:2838sTS.Mouse.Cerebellum.13.5.Male

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characteristic: age

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characteristic: ENA-CHECKLIST

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text: public

text: E-MTAB-6798:2817sTS.Mouse.Kidney.13.5.Female

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

characteristic: description

text: embryo

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6798:2833sTS.Mouse.Kidney.13.5.Female

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text: house mouse

text: embryo

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text: kidney

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text: female

characteristic: strain


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text: public

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characteristic: SRA accession

text: E-MTAB-6798:2841sTS.Mouse.Kidney.13.5.Male

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text: house mouse

text: embryo

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characteristic: organism

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text: public

text: E-MTAB-6798:5359sTS.Mouse.Kidney.13.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

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text: E-MTAB-6798:2816sTS.Mouse.Liver.13.5.Female

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characteristic: External Id

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text: E-MTAB-6798:3916sTS.Mouse.Liver.13.5.Male

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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text: E-MTAB-6798:2818sTS.Mouse.Ovary.13.5.Female

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text: Mus musculus

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characteristic: sex


text: The University of Heidelberg

text: public

text: E-MTAB-6798:2826sTS.Mouse.Testis.13.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: Mus musculus

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:2842sTS.Mouse.Testis.13.5.Male

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text: house mouse

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text: Mus musculus

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: public

text: E-MTAB-6798:2223sTS.Mouse.Brain.14.5.Male

text: ArrayExpress

text: house mouse

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text: Mus musculus

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text: Mus musculus

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text: The University of Heidelberg

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text: E-MTAB-6798:2227sTS.Mouse.Brain.14.5.Female

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text: house mouse

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text: Mus musculus

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text: forebrain

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characteristic: title


text: The University of Heidelberg

text: public

text: E-MTAB-6798:2237sTS.Mouse.Brain.14.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: Mus musculus

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text: forebrain

text: Mus musculus

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:2243sTS.Mouse.Brain.14.5.Female

text: ArrayExpress

text: house mouse

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text: Mus musculus

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text: The University of Heidelberg

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text: E-MTAB-6798:2459sTS.Mouse.Heart.14.5.Male

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

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text: E-MTAB-6798:2487sTS.Mouse.Heart.14.5.Female

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text: ArrayExpress

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text: house mouse

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text: Mus musculus

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characteristic: ENA-CHECKLIST

text: The University of Heidelberg

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text: E-MTAB-6798:2224sTS.Mouse.Cerebellum.14.5.Male

text: ArrayExpress

text: house mouse

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characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:2228sTS.Mouse.Cerebellum.14.5.Female

text: ArrayExpress

text: house mouse

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characteristic: strain


text: The University of Heidelberg

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text: E-MTAB-6798:2238sTS.Mouse.Cerebellum.14.5.Male

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text: E-MTAB-6798:2244sTS.Mouse.Cerebellum.14.5.Female

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text: ArrayExpress

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text: E-MTAB-6798:2460sTS.Mouse.Kidney.14.5.Male

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text: ArrayExpress

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text: E-MTAB-6798:2488sTS.Mouse.Kidney.14.5.Female

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text: The University of Heidelberg

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text: E-MTAB-6798:2225sTS.Mouse.Liver.14.5.Male

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characteristic: age

text: ArrayExpress

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text: E-MTAB-6798:2229sTS.Mouse.Liver.14.5.Female

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text: E-MTAB-6798:2239sTS.Mouse.Liver.14.5.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:2230sTS.Mouse.Ovary.14.5.Female

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text: E-MTAB-6798:2246sTS.Mouse.Ovary.14.5.Female

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text: E-MTAB-6798:2226sTS.Mouse.Testis.14.5.Male

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text: ArrayExpress

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

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text: The University of Heidelberg

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text: E-MTAB-6798:2185sTS.Mouse.Brain.15.5.Male

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text: ArrayExpress

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text: The University of Heidelberg

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text: E-MTAB-6798:2189sTS.Mouse.Brain.15.5.Female

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characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:2193sTS.Mouse.Brain.15.5.Male

text: ArrayExpress

text: house mouse

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text: The University of Heidelberg

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text: E-MTAB-6798:2504sTS.Mouse.Heart.15.5.Male

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text: E-MTAB-6798:2186sTS.Mouse.Cerebellum.15.5.Male

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text: E-MTAB-6798:2190sTS.Mouse.Cerebellum.15.5.Female

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text: The University of Heidelberg

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text: E-MTAB-6798:2505sTS.Mouse.Kidney.15.5.Male

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text: ArrayExpress

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text: E-MTAB-6798:2188sTS.Mouse.Liver.15.5.Male

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

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text: house mouse

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text: wild type genotype

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text: Mus musculus

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characteristic: strain


text: The University of Heidelberg

text: public

text: E-MTAB-6798:2255sTS.Mouse.Cerebellum.16.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

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characteristic: ENA-CHECKLIST

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text: E-MTAB-6798:2258sTS.Mouse.Cerebellum.16.5.Male

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

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text: E-MTAB-6798:2274sTS.Mouse.Cerebellum.16.5.Female

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text: E-MTAB-6798:2277sTS.Mouse.Cerebellum.16.5.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:2513sTS.Mouse.Kidney.16.5.Male

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characteristic: age

text: ArrayExpress

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text: E-MTAB-6798:2515sTS.Mouse.Kidney.16.5.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:2586sTS.Mouse.Kidney.16.5.Female

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text: The University of Heidelberg

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text: E-MTAB-6798:2588sTS.Mouse.Kidney.16.5.Female

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text: The University of Heidelberg

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text: E-MTAB-6798:2256sTS.Mouse.Liver.16.5.Female

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text: E-MTAB-6798:2272sTS.Mouse.Liver.16.5.Male

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text: E-MTAB-6798:2275sTS.Mouse.Liver.16.5.Female

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text: E-MTAB-6798:2279sTS.Mouse.Liver.16.5.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:2269sTS.Mouse.Ovary.16.5.Female

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text: E-MTAB-6798:2270sTS.Mouse.Testis.16.5.Male

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text: E-MTAB-6798:2278sTS.Mouse.Testis.16.5.Male

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text: E-MTAB-6798:2157sTS.Mouse.Brain.17.5.Male

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characteristic: age

text: ArrayExpress

characteristic: broker name

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text: E-MTAB-6798:2160sTS.Mouse.Brain.17.5.Male

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text: E-MTAB-6798:2163sTS.Mouse.Brain.17.5.Female

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

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text: female

characteristic: sex


text: The University of Heidelberg

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text: public

characteristic: INSDC status

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text: E-MTAB-6798:2165sTS.Mouse.Brain.17.5.Female

text: ArrayExpress

text: house mouse

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text: forebrain

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characteristic: strain


text: The University of Heidelberg

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text: E-MTAB-6798:2589sTS.Mouse.Heart.17.5.Male

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characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryo

text: wild type genotype

text: Mus musculus

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text: Mus musculus

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characteristic: ENA-CHECKLIST

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text: E-MTAB-6798:2591sTS.Mouse.Heart.17.5.Male

text: ArrayExpress

text: house mouse

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text: Mus musculus

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text: E-MTAB-6798:2593sTS.Mouse.Heart.17.5.Female

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text: E-MTAB-6798:2595sTS.Mouse.Heart.17.5.Female

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text: E-MTAB-6798:2158sTS.Mouse.Cerebellum.17.5.Male

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text: E-MTAB-6798:2164sTS.Mouse.Cerebellum.17.5.Female

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text: E-MTAB-6798:2590sTS.Mouse.Kidney.17.5.Male

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characteristic: age

text: ArrayExpress

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text: house mouse

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text: E-MTAB-6798:2118sTS.Mouse.Liver.17.5.Male

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characteristic: age

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

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text: The University of Heidelberg

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text: E-MTAB-6798:2168sTS.Mouse.Ovary.17.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

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