characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: not collected

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: feces

text: FEMALE

text: Tanzania

text: not provided

text: not collected

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: hyrax

text: not provided

text: Procaviidae

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HYRAX

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HYRAX FECES

text: gut metagenome

characteristic: season

characteristic: seasonality

text: female

characteristic: title

text: not collected

text: not provided


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: not collected

text: Here, we examine the microbiome profile of 955 stool, hand, and environmental samples collected longitudinally for over a year from the Hadza hunter-gatherers of Tanzania. The data reveal annual cyclic reconfiguration of the microbiome, in which some taxa become undetectable only to reappear in a subsequent season.

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: not collected

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

text: not collected

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: zebra

characteristic: host common name

text: not provided

characteristic: host height

text: Equus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: ZEBRA

text: feces

text: FECES

text: ZEBRA FECES

text: gut metagenome

text: not collected

characteristic: sex

text: Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

text: not collected

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: not collected

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal proximal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: chyme

text: not collected

text: Tanzania

text: not provided

text: not collected

text: UBERON:gastrointestinal system

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: zebra

text: not provided

text: Equus sp

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: stomach metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: ZEBRA

characteristic: sample source

text: stomach content

characteristic: sample type

text: ZEBRA STOMACH_SWAB

text: stomach metagenome

characteristic: season

characteristic: seasonality

text: not collected

characteristic: title

text: not collected

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: not collected

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal proximal gut

text: anthropogenic terrestrial biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: chyme

text: not collected

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

text: not collected

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: zebra

characteristic: host common name

text: not provided

characteristic: host height

text: Equus sp

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: stomach metagenome

text: Stanford University School of Medicine

text: TRUE

text: ZEBRA

text: stomach content

text: ZEBRA STOMACH_SWAB

text: stomach metagenome

text: not collected

characteristic: sex

text: not collected

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: DEDAUKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: child

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: RIVERBED

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: DEDAUKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: child

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: RIVERBED

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: DEDAUKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: FEMALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: child

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: female

characteristic: title

text: RIVERBED

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: DEDAUKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: infant

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: RIVERBED

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: DEDAUKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: adult

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: RIVERBED

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: DEDAUKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: RIVERBED

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: GIDERU

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: adult

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: GIDERU

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: FEMALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: female

characteristic: sex

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: GIDERU

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: adult

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: GIDERU

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: FEMALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: female

characteristic: sex

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: GIDERU

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: child

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: GIDERU

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: infant

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: GIDERU

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: infant

characteristic: host life stage

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: WELL

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: not collected

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

text: not collected

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: dik-dik

characteristic: host common name

text: not provided

characteristic: host height

text: Madoqua

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: gut metagenome

text: Stanford University School of Medicine

text: TRUE

text: feces

text: FECES

text: DIK_DIK FECES

text: gut metagenome

text: male

characteristic: sex

text: not collected

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: not collected

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: animal-associated habitat

text: host-associated

text: feces

text: FEMALE

text: Tanzania

text: not provided

text: not collected

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: dik-dik

text: not provided

text: Madoqua

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: TRUE

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: DIK_DIK FECES

text: gut metagenome

characteristic: season

characteristic: seasonality

text: female

characteristic: title

text: not collected

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: years

text: HUKAMAKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: FEMALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: female

characteristic: sex

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: HUKAMAKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: FEMALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: child

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: female

characteristic: title

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: HUKAMAKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: HUKAMAKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: FEMALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: infant

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: female

characteristic: title

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: HUKAMAKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: infant

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: HUKAMAKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: adult

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: HUKAMAKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: FEMALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: child

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: female

characteristic: sex

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: HUKAMAKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: not collected

text: Tanzania

text: not provided

text: not collected

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: not collected

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: not collected

characteristic: title

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: HUKAMAKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: FEMALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: infant

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: female

characteristic: sex

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: years

characteristic: age units

text: HUKAMAKO

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

characteristic: env biome

text: human-associated habitat

text: human-gut

text: feces

text: MALE

text: Tanzania

text: not provided

text: UBERON:feces

text: not provided

characteristic: host body mass index

text: UBERON:feces

text: UBERON:feces

text: human

text: not provided

text: infant

text: Homo sapiens

text: not provided

characteristic: latitude

characteristic: longitude

text: No

text: human gut metagenome

characteristic: organism

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

characteristic: sample source

text: feces

characteristic: sample type

text: FECES

text: HUMAN FECES

text: human gut metagenome

characteristic: season

characteristic: seasonality

text: male

characteristic: title

text: STREAM

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: years

text: HUKAMAKO

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: anthropogenic terrestrial biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: MALE

characteristic: gender

text: Tanzania

characteristic: geo loc name

text: not provided

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: not provided

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

characteristic: host common name

text: not provided

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not provided

characteristic: host weight

text: No

text: human gut metagenome

text: Stanford University School of Medicine

text: FALSE

text: HUMAN

text: feces

text: FECES

text: HUMAN FECES

text: human gut metagenome

text: male

characteristic: sex

text: STREAM

text: not provided


Wsc1 mutant

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Wsc1 mutant

tag: Namespace:UNIVERSITY OF EXETER

characteristic: Submitter Id

text: Genomic DNA sequence of revertant

characteristic: description

text: Magnaporthe oryzae

characteristic: organism

text: Magnaporthe oryzae

text: Wsc1 mutant Genomic DNA sequence

characteristic: title


A

text: UNIVERSITY OF EXETER

text: public

text: A

text: Genomic DNA sequence of revertant

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Sample A Genomic DNA sequence


C

text: UNIVERSITY OF EXETER

text: public

text: C

text: Genomic DNA sequence of revertant

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Sample C Genomic DNA sequence


D

text: UNIVERSITY OF EXETER

text: public

text: D

text: Genomic DNA sequence of revertant

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Sample D Genomic DNA sequence


I

text: UNIVERSITY OF EXETER

text: public

text: I

text: Genomic DNA sequence of revertant

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Sample I Genomic DNA sequence


text: UZH

text: public

unit: year

characteristic: age

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: dysplasia

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Freshly collected tissues (32 precancerous lesions and matched normal mucosa samples) were processed to investigate both their methylome and transcriptome. Paris classification: This classification schema places polyps into visual categories ranging from Ip (pendunculated), Is (sessile), IIa (slightly raised) to III (excavated/ulcerated) reference: The Paris endoscopic classification of superficial neoplastic lesions: esophagus, stomach, and colon: November 30 to December 1, 2002.[No authors listed]. Gastrointest Endosc. 2003 Dec;58(6 Suppl):S3-43. For methylation analysis, 1µg DNA was used for library preparation according to the Roche SeqCapEpi CpGiant protocol (Roche, Rotkreutz, Switzerland; details in Supplementary Experimental Procedures). Specifically with this method, DNA libraries were bisulfite converted prior to capture with a pre-designed probe pool (Roche-NimbleGen, Madison, WI) to enrich the methylation analysis to 80.5Mb of the genome, covering ~2.7 x 106 CpG sites (intra- and intergenic CpG islands, and gene promoters were thoroughly covered by this method, while CpG shores, enhancers and gene bodies were not as thoroughly investigated).

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: KRAS mutation c.35G>A (G12D)

characteristic: kras status

text: mixed

characteristic: microscopic appearance

text: 0 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa+Is

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: BRAF mutation c.1799T>A (V600E)

text: ArrayExpress

text: dysplasia

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: mixed

text: 2 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: female

characteristic: sex


text: UZH

text: public

characteristic: age

text: normal

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adenoma

characteristic: disease

characteristic: individual

text: normal

characteristic: kras status

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: normal PARIS classification

text: normal tissue adjacent to pre-lesion

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

text: public

text: normal

text: ArrayExpress

text: human

text: adenoma

text: normal

text: normal

characteristic: microscopic appearance

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: normal PARIS classification

characteristic: paris classification

text: normal tissue adjacent to pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female


text: UZH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: normal

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: normal

text: normal

text: Homo sapiens

text: Homo sapiens

text: colon

text: normal PARIS classification

text: normal tissue adjacent to pre-lesion

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

text: normal

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: normal

characteristic: kras status

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: normal PARIS classification

text: normal tissue adjacent to pre-lesion

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

text: ArrayExpress

text: no dysplasia

characteristic: clinical information

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: KRAS mutation c.37G>C (G13R)

text: SSA/P

characteristic: microscopic appearance

text: 2 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: BRAF mutation c.1799T>A (V600E)

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: dysplasia

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

text: 4 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRAF mutation c.1799T>A (V600E)

text: ArrayExpress

text: dysplasia

characteristic: clinical information

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: wild type KRAS

characteristic: kras status

text: SSA/P

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa+IIc

text: pre-lesion

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: BRAF mutation c.1799T>A (V600E)

text: ArrayExpress

text: dysplasia

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

characteristic: microscopic appearance

text: 2 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRAF mutation c.1799T>A (V600E)

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: no dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

text: 2 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: BRAF mutation c.1799T>A (V600E)

text: ArrayExpress

text: no dysplasia

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: wild type KRAS

characteristic: kras status

text: SSA/P

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-Is

text: pre-lesion

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRAF mutation c.1799T>A (V600E)

characteristic: braf status

text: ArrayExpress

text: no dysplasia

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

characteristic: microscopic appearance

text: 3 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: BRAF mutation c.1799T>A (V600E)

text: ArrayExpress

characteristic: broker name

text: no dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

text: 3 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-Is

text: pre-lesion

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRAF mutation c.1799T>A (V600E)

characteristic: braf status

text: ArrayExpress

text: no dysplasia

text: human

text: Colon Sessile Serrated Adenoma/Polyp

characteristic: disease

characteristic: individual

text: wild type KRAS

characteristic: kras status

text: SSA/P

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: BRAF mutation c.1799T>A (V600E)

text: ArrayExpress

text: no dysplasia

text: human

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

characteristic: microscopic appearance

text: 1 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRAF mutation c.1799T>A (V600E)

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: no dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: Colon Sessile Serrated Adenoma/Polyp

text: wild type KRAS

text: SSA/P

text: 6 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-Is

text: pre-lesion

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

characteristic: disease

characteristic: individual

text: KRAS mutation c.34G>T (G12C)

characteristic: kras status

text: TA

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa+Is

text: pre-lesion

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

text: KRAS mutation c.35G>T (G12V)

text: TA

characteristic: microscopic appearance

text: 5 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

characteristic: broker name

text: low grade dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adenoma

text: KRAS mutation c.35G>T (G12V)

text: TA

text: 1 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

characteristic: disease

characteristic: individual

text: KRAS mutation c.37G>T (G13C)

characteristic: kras status

text: TA

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa+Is

text: pre-lesion

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

text: KRAS mutation c.38G>T (G13V)

text: TA

characteristic: microscopic appearance

text: 1 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-IIa

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: low grade dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adenoma

text: wild type KRAS

text: TA

text: 9 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-Is

text: pre-lesion

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

characteristic: disease

characteristic: individual

text: wild type KRAS

characteristic: kras status

text: TA

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-Is

text: pre-lesion

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

text: wild type KRAS

text: TA

characteristic: microscopic appearance

text: 2 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-Is

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

characteristic: broker name

text: low grade dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adenoma

text: wild type KRAS

text: TA

text: 1 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-Is

text: pre-lesion

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

characteristic: disease

characteristic: individual

text: wild type KRAS

characteristic: kras status

text: TA

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

text: wild type KRAS

text: TA

characteristic: microscopic appearance

text: 12 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-Is

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

characteristic: broker name

text: low grade dysplasia

characteristic: clinical information

text: human

characteristic: common name

characteristic: description

text: adenoma

text: wild type KRAS

text: TA

text: 3 lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

text: PARIS classification 0-IIa

text: pre-lesion

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UZH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: wild type BRAF

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

characteristic: disease

characteristic: individual

text: KRAS mutation c.37G>T (G13C)

characteristic: kras status

text: TVA

text: 1 lesions at study colonoscopy

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: PARIS classification 0-Ips

text: pre-lesion

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: wild type BRAF

characteristic: braf status

text: ArrayExpress

text: low grade dysplasia

text: human

text: adenoma

text: wild type KRAS

text: TVA

characteristic: microscopic appearance

text: 1 lesions at study colonoscopy

characteristic: number of lesions at study colonoscopy

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: PARIS classification 0-Ips

characteristic: paris classification

text: pre-lesion

characteristic: sampling site

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INSTITUT CURIE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUT CURIE

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: INSTITUT CURIE

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: H3.1 (input)

characteristic: title


characteristic: External Id

text: INSTITUT CURIE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: H3.3 (input)


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC last update

text: public

tag: Namespace:ROBERT KOCH-INSTITUTE

text: RKI

characteristic: collected by

characteristic: collection date

text: This sample is part of an European salmonellosis outbreak, which was associated with consumption of sesame products

characteristic: description

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: stool

characteristic: isolation source host associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: serovar

text: New Salmonella serovar associated with sesame products


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH-INSTITUTE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: RKI

text: No

text: Germany

text: diseased

text: homo sapiens

text: Yes

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

characteristic: title


text: ROBERT KOCH-INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BfR

characteristic: collected by

characteristic: collection date

characteristic: description

text: Yes

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: homo sapiens

text: Yes

text: sesame seeds

characteristic: isolation source non-host-associated

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ROBERT KOCH-INSTITUTE

text: public

text: BfR

text: Yes

text: Germany

characteristic: geographic location (longitude)

text: homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: sesame spread

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: serovar


characteristic: External Id

text: GENOSPLICE TECHNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:GENOSPLICE TECHNOLOGY

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF EXETER

characteristic: INSDC last update

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS1 genomic DNA


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS2 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS3 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS4 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS5 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS6 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TDS7 genomic DNA


text: public

tag: Namespace:CENTRE FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: human

text: High Depth Jehai Genome (JHF05)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: High depth genome sequence for JHF05


text: CENTRE FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF

text: public

text: human

text: High Depth Jehai Genome (JHM06)

text: Homo sapiens

text: Homo sapiens

text: High depth genome sequence for JHM06


text: Myeloid cells

characteristic: ArrayExpress-CellType

text: Bone marrow

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: MOUSE AML LEUKEMIA

characteristic: sample description

text: Mus musculus


text: Myeloid cells

text: Bone marrow

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: Homo sapiens

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Mouse Oesophagus

characteristic: ArrayExpress-PHENOTYPE

text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

characteristic: common name

text: Female

characteristic: gender

text: Mus musculus

characteristic: organism

text: Mouse Oesophagus

characteristic: phenotype

text: Mus musculus

characteristic: title


text: Mouse Oesophagus

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mouse Oesophagus

text: Mus musculus


text: Mouse

text: female

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mouse

text: Mus musculus


text: Mouse

text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: house mouse

text: Male

text: Mus musculus

text: Mouse

text: Mus musculus

characteristic: subject id


A-cntrl

text: public

characteristic: SRA accession

text: A-cntrl

tag: Namespace:Institute of Population Genetics, University of Veterinary Medicine, Vienna

characteristic: Submitter Id

text: Biscutella didyma Pool-Seq

characteristic: description

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq A-cntrl


SA-cntrl

characteristic: ENA-CHECKLIST

text: Institute of Population Genetics, University of Veterinary Medicine, Vienna

text: public

text: SA-cntrl

text: Biscutella didyma Pool-Seq SA-cntrl

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq SA-cntrl


M-cntrl

text: public

text: M-cntrl

text: Biscutella didyma Pool-Seq M-cntrl

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq M-cntrl


MM-cntrl

text: public

text: MM-cntrl

text: Biscutella didyma Pool-Seq MM-cntrl

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq MM-cntrl


M-dry

text: public

text: M-dry

text: Biscutella didyma Pool-Seq M-dry

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq M-dry


M-wet

text: public

text: M-wet

text: Biscutella didyma Pool-Seq M-wet

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq M-wet


SA-dry

text: public

text: SA-dry

text: Biscutella didyma Pool-Seq SA-dry

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq SA-dry


SA-wet

text: public

text: SA-wet

text: Biscutella didyma Pool-Seq SA-wet

text: Biscutella didyma

text: Biscutella didyma

text: Biscutella didyma Pool-Seq SA-wet


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mouse

text: Mus musculus


text: KYOTO UNIVERSITY

text: public

tag: Namespace:KYOTO UNIVERSITY

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus


text: public

tag: Namespace:Department of Earth and Environmental Sciences

text: Cinachyrella alloclada

text: Cinachyrella alloclada

text: Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-deth clock model

characteristic: title


HBOI 16-X-95-1-007

characteristic: ENA-FIRST-PUBLIC

text: Department of Earth and Environmental Sciences

text: public

text: HBOI 16-X-95-1-007

text: Corallistes floreana

text: Corallistes floreana


HBOI 7-VI-96-1-002

characteristic: ENA-LAST-UPDATE

text: public

text: HBOI 7-VI-96-1-002

text: Corallistes sp. HBOI 7-VI-96-1-002

text: Corallistes sp. HBOI 7-VI-96-1-002


HBOI 20-X-95-1-003

characteristic: INSDC last update

text: public

text: HBOI 20-X-95-1-003

text: Craniella wolfi

text: Craniella wolfi


HBOI 15-XII-95-1-006

text: public

text: HBOI 15-XII-95-1-006

text: Neophrissospongia sp. HBOI 15-XII-95-1-006


HBOI 31-VIII-93-4-004

text: public

text: HBOI 31-VIII-93-4-004

text: Vetulina stalactites

text: Vetulina stalactites


text: wild-type

text: hermaphrodite

characteristic: ArrayExpress-SEX

text: Caenorhabditis elegans

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Caenorhabditis elegans

text: Hermaphrodite

characteristic: gender

text: Caenorhabditis elegans

text: wild-type

characteristic: phenotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans


text: Colonised

text: female

text: Streptococcus agalactiae

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Streptococcus agalactiae

text: Female

text: Streptococcus agalactiae

text: Colonised

text: Streptococcus agalactiae

text: Streptococcus agalactiae


text: Mus musculus

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: Mus musculus


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

text: mixed culture metagenome

text: mixed culture metagenome


text: LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

text: public

text: mixed culture metagenome

characteristic: organism

text: mixed culture metagenome


text: public

text: RNA extracted from bioleaching cultures

characteristic: description

text: mixed culture metagenome

text: mixed culture metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: RNA extracted from bioleaching culture

text: mixed culture metagenome

text: mixed culture metagenome


characteristic: INSDC last update

text: public

tag: Namespace:CEES - Centre for Ecological and Evolutionary Synthesis

text: human

characteristic: common name

text: Norway

characteristic: geographic location (country and/or sea)

text: Oslo

characteristic: geographic location (region and locality)

text: Homo sapiens

text: Homo sapiens

text: Shotgun metagenomics from human tooth


characteristic: External Id

text: CEES - Centre for Ecological and Evolutionary Synthesis

text: public

text: human

text: Norway

text: Oslo

text: Homo sapiens

text: Homo sapiens

text: Shotgun metagenomics from human tooth


characteristic: INSDC center name

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: anaerobic

characteristic: oxygenation status of sample

text: forward 341f: CCTACGGGNGGCWGCAG, reverse 785r: GACTACHVGGGTATCTAAKCC

characteristic: pcr primers

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

unit: °C

characteristic: sample storage temperature

unit: mL

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rconti R4.19 11.01.2016 t=0d Exp3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco,A R4.20 11.01.2016 t=0d Exp3

characteristic: title


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco,Bi R4.21 11.01.2016 t=0d Exp3


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rconti R4.19 09.03.2016 t=58d Exp3


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco,A R4.20 09.03.2016 t=58d Exp3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco,B R4.21 09.03.2016 t=58d Exp3


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rdisco R4.19 28.07.2016 t=0d Exp2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rconti R4.20 28.07.2016 t=0d Exp2

characteristic: title


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco R4.19 20.09.2016 t=54d Exp2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rconti R4.20 20.09.2016 t=54d Exp2


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco R4.19 20.09.2016 technial replicate t=54d Exp2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rconti R4.20 20.09.2016 technical replicate t=54d Exp2


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rconti,A R4.19 17.01.2017 t=0d Exp1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rconti,B R4.20 17.01.2017 t=0d Exp1

characteristic: title


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco R4.21 17.01.2017 t=0d Exp1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rconti,B R4.20 16.03.2017 t=58d Exp1


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco R4.21 16.03.2017 t=58d Exp1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rconti,A R4.19 22.03.2017 t=64d Exp1


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rconti,B R4.20 22.03.2017 t=64d Exp1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco R4.21 22.03.2017 t=64d Exp1

characteristic: title


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

text: disco feeding

characteristic: project name

text: anaerobe

characteristic: relationship to oxygen

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rconti,B R4.20 29.03.2017 t=71d Exp1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: biogas reactor

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

text: anaerobic

text: disco feeding

text: anaerobe

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene

text: Rdisco R4.21 29.03.2017 t=71d Exp1


text: public

characteristic: collection date

text: biogas reactor

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

characteristic: organism

text: anaerobic

characteristic: oxygenation status of sample

characteristic: pcr primers

text: disco feeding

text: anaerobe

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

text: Rdisco R4.21 07.04.2017 t=80d Exp1

characteristic: title


L-Fucose

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SOUTHERN MEDICAL UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: L-Fucose

tag: Namespace:SOUTHERN MEDICAL UNIVERSITY

characteristic: Submitter Id

text: China

text: healthy

characteristic: host health state

text: mice

characteristic: host scientific name

text: cecal content

characteristic: isolate

text: cecal content

characteristic: isolation source

text: mouse gut metagenome

text: mouse gut metagenome

text: L-Fucose ameliorates high fat diet-induced obesity and hepatic steatosis in mice


text: Bacteria

text: RiboZero treatment

characteristic: ArrayExpress-IMMUNOPRECIPITATE

text: intestinal content

text: Bifidobacterium breve UCC2003

characteristic: ArrayExpress-SPECIES

text: Bifidobacterium breve UCC2003

text: SC

text: public

text: Bifidobacterium breve UCC2003

characteristic: common name

text: Bifidobacterium breve UCC2003

characteristic: organism

text: Bifidobacterium breve UCC2003

characteristic: subject id

text: Bifidobacterium breve UCC2003