characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

text: public

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: USA

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mediterrean

characteristic: environment (biome)

text: soil [ENVO:00001998]

characteristic: environment (feature)

text: soil [ENVO:00001998]

characteristic: environment (material)

text: Iran

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

text: metagenome

text: soil metagenome

characteristic: organism

text: 16S metabarcoding data of global soil samples

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

text: public

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: Brazil

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: Cameroon

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

text: public

characteristic: environment (biome)

text: soil [ENVO:00001998]

characteristic: environment (feature)

text: soil [ENVO:00001998]

characteristic: environment (material)

text: Argentina

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: Sri Lanka

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: Czech Republic

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: environment (biome)

text: soil [ENVO:00001998]

characteristic: environment (feature)

text: soil [ENVO:00001998]

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

text: public

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: Iran

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: New Zealand

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

text: public

text: Savannas

characteristic: environment (biome)

text: soil [ENVO:00001998]

characteristic: environment (feature)

text: soil [ENVO:00001998]

characteristic: environment (material)

text: Zimbabwe

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: India

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil [ENVO:00001998]

text: soil [ENVO:00001998]

text: Finland

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: environment (biome)

text: soil [ENVO:00001998]

characteristic: environment (feature)

text: soil [ENVO:00001998]

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: soil sample

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: URMITE

text: public

text: flower

characteristic: isolation source

text: Asaia bogorensis

text: Asaia bogorensis

characteristic: strain

text: Asaia bogorensis strain IPC-01 genome


BARAN1 MAG

text: AALBORG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BARAN1 MAG

tag: Namespace:AALBORG UNIVERSITY

text: Anaerobic digester microbiome

text: mesophilic sludge digester

text: Anaerobic digester biomass

text: Denmark

text: 56.47 N

characteristic: geographic location (latitude)

text: 10.04 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Candidatus Acetothermia bacterium Ran1

text: Normigas

characteristic: project name

text: Candidatus Acetothermia bacterium Ran1

text: Illumina and Nanopore

characteristic: sequencing method

text: Candidatus Bipolaricaulis anaerobius RAN1 MAG

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Agroscope

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: These files contain paired-end sequence information from a MiSeq (run #11) containing maize ITS and 16S amplicons. The respective publications contain the sample descriptions, barcode assignments, primer sequences and bioinformatic scripts. Filenames: p1617-3554-01_S1_L001_R1_001.fastq.gz & p1617-3554-01_S1_L001_R2_001.fastq.gz

characteristic: description

text: agricultural field

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil, root and rhizosphere

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

text: metagenome

text: Zea mays

text: plant-associated

characteristic: plant-associated environmental package

text: maize soil feedback microbiome fungi

text: Zea mays

text: MiSeq

text: Hu et al 2018; maize soil feedback microbiota fungi


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Whole body

characteristic: isolation source

text: Asaia bogorensis

characteristic: organism

text: Asaia bogorensis

characteristic: strain

text: Asaia bogorensis strain GD-01 genome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: forest soil [ENVO:00002261]

text: surface soil [ENVO:02000059]

text: soil [ENVO:00001998]

text: Estonia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: Estonian forest and grassland topsoil samples

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: soil sample


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: forest soil [ENVO:00002261]

characteristic: environment (biome)

text: surface soil [ENVO:02000059]

characteristic: environment (feature)

text: soil [ENVO:00001998]

characteristic: environment (material)

text: Latvia

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Illumina

text: soil

text: soil sample


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: CIB, CAS

text: public

characteristic: SRA accession

tag: Namespace:CIB, CAS

characteristic: Submitter Id

characteristic: collection date

text: mountain

text: top soil

text: soil

text: China

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

characteristic: organism

text: Co-occurrence networks

text: metagenome

text: Miseq Amplicon

text: soil

text: co-occurrence patterns for soil bacteria and fungi along an altitudinal gradient in Gongga Mountain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Department of Biomedical Sciences, City University of Hong Kong

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: All specimens were snap-frozen in liquid nitrogen and stored at -80°C. Frozen sections of 5 µm were stained with haematoxylin and eosin (HE) and examined by two independent pathologists to confirm diagnosis and assess tumor cell percentage. PDAC samples that contained less than 30% tumor cells after macrodissection were excluded from further processing, with the exception of cases from which patient-derived xenografts were established. For RNA isolation, 30 sections of 20 µm were cut, and RNA was isolated using RNABee (Bio-Connect, Huissen, the Netherlands) and the RNeasy Mini kit (Qiagen, Hilden, Germany) according to manufacturer’s instructions. Samples were DNAse-treated. RNA was amplified using the Total Prep RNA Amplification kit (Illumina, San Diego, CA). Poly-A enriched libraries were synthesized using TruSeq RNA Library Prep kit.

characteristic: description

text: poor

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: disease

characteristic: individual

characteristic: lymph node metastasis ratio

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: dead

characteristic: organism status

unit: month

characteristic: overall survival

text: R0-microscopically radical,marge >=1mm

characteristic: radicality

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Department of Biomedical Sciences, City University of Hong Kong

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: moderate

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: dead

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: dead

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: human

text: poor

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: individual

characteristic: lymph node metastasis ratio

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: dead

characteristic: organism status

characteristic: overall survival

text: R0-microscopically radical,marge >=1mm

characteristic: radicality

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: moderate

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: alive

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: poor

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: dead

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: poor

text: pancreatic ductal adenocarcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: dead

characteristic: organism status

characteristic: overall survival

text: R0-microscopically radical,marge >=1mm

characteristic: radicality

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: moderate

text: pancreatic ductal adenocarcinoma

characteristic: lymph node metastasis ratio

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: dead

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: alive

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: well

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: dead

characteristic: organism status

characteristic: overall survival

text: R0-microscopically radical,marge >=1mm

characteristic: radicality

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: well

text: pancreatic ductal adenocarcinoma

characteristic: lymph node metastasis ratio

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: alive

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: moderate

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: alive

text: R0-microscopically radical,marge >=1mm

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: poor

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: dead

characteristic: organism status

characteristic: overall survival

text: R0-microscopically radical,marge >=1mm

characteristic: radicality

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: moderate

text: pancreatic ductal adenocarcinoma

characteristic: lymph node metastasis ratio

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: dead

text: R1-microscopically irradical, marge <1 mm or tumor in resection margin

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: poor

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: dead

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: poor

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: dead

characteristic: organism status

characteristic: overall survival

characteristic: radicality

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

characteristic: lymph node metastasis ratio

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: dead

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: moderate

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: dead

text: Homo sapiens

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: moderate

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: alive

characteristic: organism status

characteristic: overall survival

characteristic: radicality

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: well

text: pancreatic ductal adenocarcinoma

characteristic: lymph node metastasis ratio

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: dead

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: well

text: pancreatic ductal adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: dead

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: poor

characteristic: differentiation grade

text: pancreatic ductal adenocarcinoma

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: alive

characteristic: organism status

characteristic: overall survival

characteristic: radicality

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: pancreatic ductal adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title

text: pancreatic cancer cells grown in nude mouse

characteristic: xenograft


E-MTAB-6832:BR.1N control

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6832:BR.1N control

tag: Namespace:Medical University of Gdansk Department of Biology and Pharmaceutical Botany

text: ArrayExpress

characteristic: broker name

text: HaCaT

characteristic: cell line

text: keratinocyte

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cultured keratinocytes (HaCaT) and fibroblasts (46BR.1N) for RNAseq analysis were trypsynised, washed, and snap frozen for transcriptomic analysis. The pellets were stored in - 70ºC prior to RNA isolation. Immortalized human keratinocytes (HaCaT, (DKFZ Heidelberg, Germany) and human, dermal fibroblasts (46BR.1N, Sigma-Aldrich) were grown in DMEM-HG (Sigma-Aldrich, D6429) supplemented with 10% of fetal bovine serum (FBS), 100 units/mL of penicillin, and 100 μg/mL of streptomycin. The cells were routinely cultured under a humidified atmosphere with 5% CO2 at 37°C. For zebularine stimulation, the medium was exchanged for DMEM supplemented with 2% FBS, 16 μM thymidine, and zebularine (1 μg/mL). After 48 h, medium was exchanged and cells were stimulated with zebularine for a second time. After another 48 h of incubation, cells were detached, counted, washed in PBS, centrifuged and stored as pellets at -80°C. Three independent cell culture experiments were performed for each cell line. Total RNA was isolated from cultured keratinocytes (HaCaT) and fibroblasts (46BR.1N) using miRNeasy Mini Kit (Qiagen) according to the manufacturer’s instruction except for that 1-bromo-3-chloropropan was used for extraction. RNAs extracted from cell culture replicates were pooled in equal concentrations. The measured RIN values were >8.0. Ribosome reduction kit (Arraystar Inc, Rockville, USA) and SureSelect Strand Specific mRNA library kit (Agilent, Santa Clara, USA) were used according to standard procedure. The cDNA libraries were quantitated using qPCR in a Roche LightCycler 480 with the Kapa Library Quantification Kit for Illumina (Kapa Biosystems, Woburn, USA).

characteristic: description

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: BR.1N control


E-MTAB-6832:HaCaT control

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Medical University of Gdansk Department of Biology and Pharmaceutical Botany

characteristic: INSDC last update

text: public

text: E-MTAB-6832:HaCaT control

text: ArrayExpress

text: fibroblast

text: human

text: hypogammaglobulinemia

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: HaCaT control


E-MTAB-6832:BR.1N zebularine

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6832:BR.1N zebularine

characteristic: Submitter Id

text: ArrayExpress

text: HaCaT

text: keratinocyte

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: BR.1N zebularine


E-MTAB-6832:HaCaT zebularine

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6832:HaCaT zebularine

text: ArrayExpress

text: fibroblast

text: human

text: hypogammaglobulinemia

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: HaCaT zebularine

characteristic: title


text: The Children's Hospital of Philadelphia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:The Children's Hospital of Philadelphia

text: ArrayExpress

characteristic: broker name

text: osteoblast

text: human

text: Protocols: Primary bone-marrow derived human MSCs isolated from healthy donors were plated in osteogenic media at 15,000 cells/cm2 and the next day stimulated with recombinant human BMP2 in serum-free osteogenic media. Cells were harvested at 72 hours following BMP2 treatment. Total RNA was isolated from differentiating osteoblasts using TRIzol reagent by following manufacturer instructions. Total RNA was depleted of rRNA utilizing the Ribo-Zero rRNA Removal Kit (Illumina). The depleted RNA was then made into RNA-seq libraries using NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (NEB).

text: normal

text: osteogenic differentiation medium with BMP2

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: mesenchymal stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

tag: Namespace:UNIVERSITY MEDICAL CENTER UTRECHT

text: Blood

characteristic: bio material

text: University Medical Centre Utrecht

characteristic: collected by

characteristic: collection date

text: Colistin resistant Escherichia coli isolate obtained from a positive bloodculture

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Hospital; patient

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Blood

text: University Medical Centre Utrecht

text: Netherlands

text: diseased

text: Homo sapiens

text: Hospital; patient

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Colistin resistant Escherichia coli isolate

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY MEDICAL CENTER UTRECHT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Blood

characteristic: bio material

text: University Medical Centre Utrecht

characteristic: collected by

text: Colistin resistant Escherichia albertii isolate obtained from a positive bloodculture

text: Netherlands

text: diseased

text: Homo sapiens

text: Hospital; patient

text: Escherichia albertii

text: Escherichia albertii


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: Blood

text: University Medical Centre Utrecht

characteristic: collection date

text: Colistin susceptible Escherichia coli isolate obtained from a positive bloodculture

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Hospital; patient

text: Escherichia coli

text: Escherichia coli


E-MTAB-6862:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Children's Hospital of Philadelphia

text: public

text: E-MTAB-6862:Sample 1

text: ArrayExpress

characteristic: broker name

text: osteoblast

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Primary bone-marrow derived human MSCs isolated from healthy donors were plated in osteogenic media at 15,000 cells/cm2 and the next day stimulated with recombinant human BMP2 in serum-free osteogenic media. Cells were harvested at 72 hours following BMP2 treatment. The initial 3C libraries were generated following a previously published protocol (Hughes et al., Nature genetics, 2014). The DNA was digested using DpnII, then re-ligated together using T4 DNA ligase, and finally isolated by phenol/chloroform extraction. The 3C libraries were sonicated to an average size of 300bp. Agilent SureSelect library capture protocol was then applied with capture probes targeting both ends of DpnII restriction fragments that overlap promoters of protein-coding, noncoding, antisense, snRNA, miRNA, snoRNA and lincRNA transcripts, totaling 36,691 RNA baited fragments. The bait list is provided in the file baits_1frag.bed.

text: normal

characteristic: disease

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: mesenchymal stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: Sample 1


E-MTAB-6862:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: The Children's Hospital of Philadelphia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6862:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: osteoblast

text: human

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: mesenchymal stem cell

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-6862:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Children's Hospital of Philadelphia

text: public

text: E-MTAB-6862:Sample 3

text: ArrayExpress

characteristic: broker name

text: osteoblast

text: human

characteristic: description

text: normal

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: mesenchymal stem cell

text: Homo sapiens

text: Sample 3


text: The Children's Hospital of Philadelphia

text: public

text: ArrayExpress

text: mesenchymal stem cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Primary bone-marrow derived human MSCs isolated from 4 healthy donors were plated in osteogenic media at 15,000 cells/cm2 and stimulated the next day with recombinant human BMP2 in serum-free osteogenic media. Cells were harvested at 72 hours following BMP2 treatment. The ATAC-seq libraries were generated following a previously published protocol (Buenrostro et al., Nature Methods, 2013). The nuclei were isolated from the 100,000 cells. The isolated nuclei were treated with Tn5 Transposes from Nextera DNA Sample Preparation Kit and the transposed DNA was purified using a Qiagen MinElute Kit. The transposed DNA libraries were amplified by PCR for 12 cycles and isolated by Ampure XP beads.

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

characteristic: replicate

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Institute for Research in Biomedicine

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Institute for Research in Biomedicine

text: undisturbed

text: metagenome

text: metagenome

text: coelomic P. lividus microbiota


text: Institute for Research in Biomedicine

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: disturbed

text: metagenome

text: metagenome

text: coelomic P. lividus microbiota


text: University of Heidelberg

text: public

text: E-MTAB-6833:5180sTS.Opossum.Brain.13.5.Female

tag: Namespace:University of Heidelberg

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: forebrain

characteristic: organism part

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5184sTS.Opossum.Brain.13.5.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:5186sTS.Opossum.Heart.13.5.Male

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5191sTS.Opossum.Heart.13.5.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

text: E-MTAB-6833:5219sTS.Opossum.Heart.13.5.Female

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: heart

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5181sTS.Opossum.Cerebellum.13.5.Female

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5185sTS.Opossum.Cerebellum.13.5.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:5295sTS.Opossum.Cerebellum.13.5.Female

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5183sTS.Opossum.Liver.13.5.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:5192sTS.Opossum.Liver.13.5.Male

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: liver

characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5336sTS.Opossum.Liver.13.5.Female

text: ArrayExpress

text: gray short-tailed opossum

text: embryo

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4805sTS.Opossum.Brain.0dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:4807sTS.Opossum.Brain.0dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5293sTS.Opossum.Brain.0dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:5039sTS.Opossum.Heart.0dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: heart

characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5139sTS.Opossum.Heart.0dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5214sTS.Opossum.Heart.0dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:4806sTS.Opossum.Cerebellum.0dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5294sTS.Opossum.Cerebellum.0dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:5040sTS.Opossum.Liver.0dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: liver

characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5041sTS.Opossum.Liver.0dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4809sTS.Opossum.Brain.10dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:4811sTS.Opossum.Brain.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:4813sTS.Opossum.Brain.10dpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

text: E-MTAB-6833:5587sTS.Opossum.Brain.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: forebrain

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5042sTS.Opossum.Heart.10dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5045sTS.Opossum.Heart.10dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:5048sTS.Opossum.Heart.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5590sTS.Opossum.Heart.10dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:4810sTS.Opossum.Cerebellum.10dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: hindbrain

characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4812sTS.Opossum.Cerebellum.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5588sTS.Opossum.Cerebellum.10dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:5043sTS.Opossum.Kidney.10dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5046sTS.Opossum.Kidney.10dpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

text: E-MTAB-6833:5049sTS.Opossum.Kidney.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: kidney

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5591sTS.Opossum.Kidney.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5044sTS.Opossum.Liver.10dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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text: Monodelphis domestica

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

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text: E-MTAB-6833:5047sTS.Opossum.Liver.10dpb.Male

text: ArrayExpress

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text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5050sTS.Opossum.Liver.10dpb.Female

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characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

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text: University of Heidelberg

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text: E-MTAB-6833:5589sTS.Opossum.Liver.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

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text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

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text: E-MTAB-6833:5324sTS.Opossum.Ovary.10dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

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text: Monodelphis domestica

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characteristic: sex

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text: University of Heidelberg

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text: ArrayExpress

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

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text: E-MTAB-6833:5332sTS.Opossum.Testis.10dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

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text: Monodelphis domestica

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text: University of Heidelberg

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characteristic: INSDC status

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text: E-MTAB-6833:5601sTS.Opossum.Testis.10dpb.Male

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characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

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text: Monodelphis domestica

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text: Monodelphis domestica

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text: University of Heidelberg

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text: E-MTAB-6833:4599sTS.Opossum.Brain.120dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4624sTS.Opossum.Brain.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: female

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5852sTS.Opossum.Brain.120dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

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text: Monodelphis domestica

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text: forebrain

text: Monodelphis domestica

text: female


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:4468sTS.Opossum.Heart.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:4634sTS.Opossum.Heart.120dpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

text: E-MTAB-6833:5855sTS.Opossum.Heart.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: heart

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4626sTS.Opossum.Cerebellum.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4628sTS.Opossum.Cerebellum.120dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

characteristic: description

text: postnatal

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

text: E-MTAB-6833:5857sTS.Opossum.Cerebellum.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

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text: wild type genotype

text: Monodelphis domestica

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text: hindbrain

text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:4600sTS.Opossum.Kidney.120dpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

text: E-MTAB-6833:4710sTS.Opossum.Kidney.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: kidney

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4469sTS.Opossum.Liver.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4601sTS.Opossum.Liver.120dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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characteristic: INSDC last update

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text: E-MTAB-6833:5856sTS.Opossum.Liver.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

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text: University of Heidelberg

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characteristic: INSDC status

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text: E-MTAB-6833:4471sTS.Opossum.Ovary.120dpb.Female

characteristic: Submitter Id

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text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: ovary

text: Monodelphis domestica

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text: E-MTAB-6833:5853sTS.Opossum.Ovary.120dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

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text: E-MTAB-6833:5854sTS.Opossum.Testis.120dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: male

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4698sTS.Opossum.Brain.14dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

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text: public

text: E-MTAB-6833:4702sTS.Opossum.Brain.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

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text: forebrain

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5876sTS.Opossum.Brain.14dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: forebrain

text: Monodelphis domestica

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text: University of Heidelberg

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text: E-MTAB-6833:4766sTS.Opossum.Heart.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

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text: E-MTAB-6833:4769sTS.Opossum.Heart.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

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text: wild type genotype

text: Monodelphis domestica

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text: female

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4772sTS.Opossum.Heart.14dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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text: public

text: E-MTAB-6833:4775sTS.Opossum.Heart.14dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:4699sTS.Opossum.Cerebellum.14dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:4701sTS.Opossum.Cerebellum.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: hindbrain

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4703sTS.Opossum.Cerebellum.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4767sTS.Opossum.Kidney.14dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

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text: Monodelphis domestica

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characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC last update

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text: ArrayExpress

text: gray short-tailed opossum

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characteristic: INSDC status

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text: E-MTAB-6833:4773sTS.Opossum.Kidney.14dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

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text: University of Heidelberg

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text: E-MTAB-6833:4776sTS.Opossum.Kidney.14dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

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text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

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text: University of Heidelberg

text: public

text: E-MTAB-6833:4768sTS.Opossum.Liver.14dpb.Female

text: ArrayExpress

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characteristic: sex

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text: University of Heidelberg

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text: E-MTAB-6833:4771sTS.Opossum.Liver.14dpb.Female

text: ArrayExpress

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characteristic: ENA-FIRST-PUBLIC

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text: E-MTAB-6833:4774sTS.Opossum.Liver.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

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text: University of Heidelberg

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characteristic: INSDC status

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text: E-MTAB-6833:4777sTS.Opossum.Liver.14dpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

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text: University of Heidelberg

text: public

text: E-MTAB-6833:4952sTS.Opossum.Ovary.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

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characteristic: developmental stage

text: wild type genotype

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text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

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text: University of Heidelberg

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text: E-MTAB-6833:4953sTS.Opossum.Ovary.14dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: ovary

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4954sTS.Opossum.Testis.14dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

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characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC center name

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characteristic: INSDC last update

text: public

text: E-MTAB-6833:5877sTS.Opossum.Testis.14dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: testis

text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:4622sTS.Opossum.Brain.150dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:4623sTS.Opossum.Brain.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

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text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

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text: University of Heidelberg

text: public

text: E-MTAB-6833:5858sTS.Opossum.Brain.150dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4209sTS.Opossum.Heart.150dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: heart

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text: female


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:4213sTS.Opossum.Heart.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5861sTS.Opossum.Heart.150dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:4682sTS.Opossum.Cerebellum.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: hindbrain

characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5859sTS.Opossum.Cerebellum.150dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:4210sTS.Opossum.Kidney.150dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

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text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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text: public

text: E-MTAB-6833:4214sTS.Opossum.Kidney.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5862sTS.Opossum.Kidney.150dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

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text: University of Heidelberg

text: public

text: E-MTAB-6833:4211sTS.Opossum.Liver.150dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: liver

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4215sTS.Opossum.Liver.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5863sTS.Opossum.Liver.150dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: female


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6833:4208sTS.Opossum.Ovary.150dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: ovary

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5860sTS.Opossum.Ovary.150dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: ovary

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:4212sTS.Opossum.Testis.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: testis

characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:4320sTS.Opossum.Testis.150dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: testis

text: Monodelphis domestica

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:3951sTS.Opossum.Brain.180dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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characteristic: description

text: postnatal

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text: Monodelphis domestica

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text: forebrain

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

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characteristic: INSDC last update

text: public

text: E-MTAB-6833:3957sTS.Opossum.Brain.180dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

text: wild type genotype

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text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5972sTS.Opossum.Brain.14mpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: forebrain

text: Monodelphis domestica

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text: University of Heidelberg

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text: E-MTAB-6833:5974sTS.Opossum.Brain.14mpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

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text: Monodelphis domestica

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text: Monodelphis domestica

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characteristic: organism part

text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:3953sTS.Opossum.Heart.180dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:3959sTS.Opossum.Heart.180dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

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text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

text: E-MTAB-6833:3990sTS.Opossum.Heart.180dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:3996sTS.Opossum.Heart.180dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

text: E-MTAB-6833:5975sTS.Opossum.Cerebellum.4mpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: hindbrain

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text: Monodelphis domestica

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5976sTS.Opossum.Cerebellum.6mpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: male

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5977sTS.Opossum.Cerebellum.4mpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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text: postnatal

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text: Monodelphis domestica

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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text: public

text: E-MTAB-6833:3954sTS.Opossum.Kidney.180dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: kidney

text: Monodelphis domestica

text: male


text: University of Heidelberg

text: public

characteristic: INSDC status

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text: E-MTAB-6833:3960sTS.Opossum.Kidney.180dpb.Female

characteristic: Submitter Id

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text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: kidney

text: Monodelphis domestica

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text: University of Heidelberg

text: public

text: E-MTAB-6833:3998sTS.Opossum.Kidney.180dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: kidney

characteristic: organism part

text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:3955sTS.Opossum.Liver.180dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:3961sTS.Opossum.Liver.180dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

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text: postnatal

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

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text: E-MTAB-6833:3991sTS.Opossum.Liver.180dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

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text: wild type genotype

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text: University of Heidelberg

text: public

characteristic: INSDC status

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text: E-MTAB-6833:3997sTS.Opossum.Liver.180dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

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text: University of Heidelberg

text: public

text: E-MTAB-6833:3999sTS.Opossum.Ovary.180dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: Protocols: The organs were dissected from 15 developmental stages (starting at e13.6 until P180). The dissected ‘brain’ samples correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ P4) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

characteristic: developmental stage

text: wild type genotype

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text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: ovary

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

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text: University of Heidelberg

text: public

text: E-MTAB-6833:5978sTS.Opossum.Ovary.20mpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: ovary

text: Monodelphis domestica

text: female

characteristic: sex

characteristic: title


characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:3956sTS.Opossum.Testis.180dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

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text: Monodelphis domestica

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text: testis

text: Monodelphis domestica

text: male


characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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text: public

text: E-MTAB-6833:3993sTS.Opossum.Testis.180dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: testis

text: Monodelphis domestica

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text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5178sTS.Opossum.Brain.2dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: forebrain

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text: University of Heidelberg

text: public

text: E-MTAB-6833:5287sTS.Opossum.Brain.2dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: forebrain

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text: Monodelphis domestica

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characteristic: ENA-CHECKLIST

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text: University of Heidelberg

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text: E-MTAB-6833:5289sTS.Opossum.Brain.2dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: forebrain

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characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5291sTS.Opossum.Brain.2dpb.Male

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

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text: Monodelphis domestica

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text: forebrain

text: Monodelphis domestica

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characteristic: ENA-FIRST-PUBLIC

text: University of Heidelberg

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

text: E-MTAB-6833:5210sTS.Opossum.Heart.2dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

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text: heart

text: Monodelphis domestica

text: female


text: University of Heidelberg

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6833:5212sTS.Opossum.Heart.2dpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

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text: University of Heidelberg

text: public

text: E-MTAB-6833:5337sTS.Opossum.Heart.2dpb.Female

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: heart

characteristic: organism part

text: Monodelphis domestica

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

text: E-MTAB-6833:5339sTS.Opossum.Heart.2dpb.Male

text: ArrayExpress

text: gray short-tailed opossum

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: heart

text: Monodelphis domestica

text: male

characteristic: sex

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characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6833:5179sTS.Opossum.Cerebellum.2dpb.Female

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

characteristic: description

text: postnatal

text: wild type genotype

text: Monodelphis domestica

text: Monodelphis domestica

text: hindbrain

text: Monodelphis domestica

text: female