text: PUBLIC HEALTH ENGLAND

text: public

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: not provided

text: culture

text: Laboratory

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Mei 254 mutant 7


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:PUBLIC HEALTH ENGLAND

characteristic: Submitter Id

text: Ceftazidime-avibactam selected

characteristic: description

text: United Kingdom

text: not provided

text: not provided

characteristic: host scientific name

text: culture

characteristic: isolate

text: Laboratory

characteristic: isolation source

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Mei 254 mutant 14

characteristic: title


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: not provided

text: culture

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: LN01028 Parent strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: LN01028 mutant 1


characteristic: External Id

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: LN01028 mutant 2


text: PUBLIC HEALTH ENGLAND

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: LN01028 mutant 4


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: Submitter Id

text: TEM-10 producer

characteristic: description

text: United Kingdom

text: not provided

text: not provided

characteristic: host scientific name

text: culture

text: Escherichia coli

text: Escherichia coli

text: NCTC 13352 Parent strain


text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

characteristic: isolate

text: Laboratory

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: NCTC 13352 mutant 9


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: NCTC 13352 mutant 10

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

text: public

text: Chromosomal AmpC

text: United Kingdom

text: not provided

characteristic: host health state

text: not provided

text: culture

text: Enterobacter cloacae

text: Enterobacter cloacae

text: LN07047 Parent strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Enterobacter cloacae

text: Enterobacter cloacae

text: LN07047 mutant 4


text: PUBLIC HEALTH ENGLAND

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Enterobacter cloacae

text: Enterobacter cloacae

text: LN07047 mutant 7


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Ceftazidime-avibactam selected

characteristic: description

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Enterobacter cloacae

text: Enterobacter cloacae

text: LN07047 mutant 15


text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

characteristic: host scientific name

text: culture

characteristic: isolate

text: Laboratory

characteristic: isolation source

text: Enterobacter cloacae

text: Enterobacter cloacae

text: LN07047 mutant 19


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: culture

text: Laboratory

text: Enterobacter cloacae

characteristic: organism

text: Enterobacter cloacae

text: LN07047 mutant 24


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

text: public

text: Chromosomal AmpC

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Citrobacter freundii

text: Citrobacter freundii

text: SE01073 Parent strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

characteristic: host health state

text: not provided

text: culture

text: Laboratory

text: Citrobacter freundii

text: Citrobacter freundii

text: SE01073 mutant 5


text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Citrobacter freundii

text: Citrobacter freundii

text: SE01073 mutant 8


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Citrobacter freundii

text: Citrobacter freundii

text: SE01073 mutant 9


text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

characteristic: description

text: United Kingdom

text: not provided

text: not provided

characteristic: host scientific name

text: culture

characteristic: isolate

text: Laboratory

text: Citrobacter freundii

text: Citrobacter freundii

text: SE01073 mutant 12


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: culture

text: Laboratory

characteristic: isolation source

text: Citrobacter freundii

text: Citrobacter freundii

text: SE01073 mutant 22


PS1843 RNA 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PS1843 RNA 2

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: RNA of Pristionchus pacificus strain PS1843

text: Pristionchus pacificus

characteristic: organism

text: Pristionchus pacificus

text: RNA of P. pacificus strain PS1843 2


PS312 RNA

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: PS312 RNA

text: RNA of Pristionchus pacificus strain PS312

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain PS312

characteristic: title


RS5188 RNA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: RS5188 RNA

text: RNA of Pristionchus pacificus strain RS5188

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5188


RS5195 RNA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RS5195 RNA

text: RNA of Pristionchus pacificus strain RS5195

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5195


RS5197 RNA

text: public

characteristic: SRA accession

text: RS5197 RNA

characteristic: Submitter Id

text: RNA of Pristionchus pacificus strain RS5197

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5197


RS5202 RNA

text: public

text: RS5202 RNA

text: RNA of Pristionchus pacificus strain RS5202

characteristic: description

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5202


RS5215 RNA

text: public

text: RS5215 RNA

text: RNA of Pristionchus pacificus strain RS5215

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5215


RS5217 RNA

text: public

text: RS5217 RNA

text: RNA of Pristionchus pacificus strain RS5217

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5217


RS5270 RNA

text: public

text: RS5270 RNA

text: RNA of Pristionchus pacificus strain RS5270

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5270


RS5271 RNA

text: public

text: RS5271 RNA

text: RNA of Pristionchus pacificus strain RS5271

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5271


RS5295 RNA

text: public

text: RS5295 RNA

text: RNA of Pristionchus pacificus strain RS5295

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5295


RS5297 RNA 2

text: public

text: RS5297 RNA 2

text: RNA of Pristionchus pacificus strain RS5297

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5297 2


RS5406 RNA

text: public

text: RS5406 RNA

text: RNA of Pristionchus pacificus strain RS5406

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5406


RS5409 RNA

text: public

text: RS5409 RNA

text: RNA of Pristionchus pacificus strain RS5409

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5409


RS5412 RNA

text: public

text: RS5412 RNA

text: RNA of Pristionchus pacificus strain RS5412

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5412


RS5419 RNA

text: public

text: RS5419 RNA

text: RNA of Pristionchus pacificus strain RS5419

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5419


RS5421 RNA

text: public

text: RS5421 RNA

text: RNA of Pristionchus pacificus strain RS5421

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5421


RS5424 RNA

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: RS5424 RNA

text: RNA of Pristionchus pacificus strain RS5424

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5424


RS5427 RNA

text: public

text: RS5427 RNA

text: RNA of Pristionchus pacificus strain RS5427

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RS5427


RS5522 RNA

text: public

text: RS5522 RNA

text: RNA of Pristionchus exspectatus strain RS5522

text: Pristionchus exspectatus

text: Pristionchus exspectatus

text: RNA of P. exspectatus strain RS5522


RSA041 RNA

text: public

text: RSA041 RNA

text: RNA of Pristionchus pacificus strain RSA041

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA041


RSA053 RNA

text: public

text: RSA053 RNA

text: RNA of Pristionchus pacificus strain RSA053

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA053


RSA086 RNA

text: public

text: RSA086 RNA

text: RNA of Pristionchus pacificus strain RSA086

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA086


RSA098 RNA

text: public

text: RSA098 RNA

text: RNA of Pristionchus pacificus strain RSA098

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA098


RSA100 RNA

text: public

text: RSA100 RNA

text: RNA of Pristionchus pacificus strain RSA100

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA100


RSA618 RNA

text: public

text: RSA618 RNA

text: RNA of Pristionchus pacificus strain RSA618

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA618


RSA620 RNA

text: public

text: RSA620 RNA

text: RNA of Pristionchus pacificus strain RSA620

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA620


RSA621 RNA

text: public

text: RSA621 RNA

text: RNA of Pristionchus pacificus strain RSA621

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA621


RSA642 RNA

text: public

text: RSA642 RNA

text: RNA of Pristionchus pacificus strain RSA642

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA642


RSA643 RNA

text: public

text: RSA643 RNA

text: RNA of Pristionchus pacificus strain RSA643

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSA643


RSB035 RNA

text: public

text: RSB035 RNA

text: RNA of Pristionchus pacificus strain RSB035

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSB035


RSB037 RNA

text: public

text: RSB037 RNA

text: RNA of Pristionchus pacificus strain RSB037

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSB037


RSB072 RNA

text: public

text: RSB072 RNA

text: RNA of Pristionchus pacificus strain RSB072

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSB072


RSC002 RNA

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: RSC002 RNA

text: RNA of Pristionchus pacificus strain RSC002

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC002


RSC006 RNA

text: public

text: RSC006 RNA

text: RNA of Pristionchus pacificus strain RSC006

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC006


RSC007 RNA

text: public

text: RSC007 RNA

text: RNA of Pristionchus pacificus strain RSC007

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC007


RSC009 RNA

text: public

text: RSC009 RNA

text: RNA of Pristionchus pacificus strain RSC009

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC009


RSC013 RNA

text: public

text: RSC013 RNA

text: RNA of Pristionchus pacificus strain RSC013

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC013


RSC034 RNA

text: public

text: RSC034 RNA

text: RNA of Pristionchus pacificus strain RSC034

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC034


RSC041 RNA

text: public

text: RSC041 RNA

text: RNA of Pristionchus pacificus strain RSC041

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC041


RSC045 RNA

text: public

text: RSC045 RNA

text: RNA of Pristionchus pacificus strain RSC045

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC045


RSC066 RNA

text: public

text: RSC066 RNA

text: RNA of Pristionchus pacificus strain RSC066

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC066


RSC088 RNA

text: public

text: RSC088 RNA

text: RNA of Pristionchus pacificus strain RSC088

text: Pristionchus pacificus

text: Pristionchus pacificus

text: RNA of P. pacificus strain RSC088


text: INSTITUTE OF CANCER RESEARCH

text: public

tag: Namespace:INSTITUTE OF CANCER RESEARCH

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: MMR study for mCRPC


1 megagametophyte

text: UNIVERSITE LAVAL

text: public

text: 1 megagametophyte

tag: Namespace:UNIVERSITE LAVAL

characteristic: collection date

characteristic: estimated size

text: Poland

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: isolation and growth condition

characteristic: number of replicons

text: Picea abies var. abies

text: needles

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: needles

characteristic: plant structure

text: Picea abies var. abies

text: megagametophyte


text: Mix Kolf, Yemz, Vass

text: plated EB

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

characteristic: organism

text: plated EB

characteristic: phenotype

text: Homo sapiens

characteristic: subject id

characteristic: title


text: STATENS SERUM INSTITUT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:STATENS SERUM INSTITUT

characteristic: Submitter Id

text: United Kingdom

characteristic: description

text: Escherichia coli

text: Escherichia coli


text: STATENS SERUM INSTITUT

text: public

text: Denmark

text: Escherichia coli

text: Escherichia coli


text: STATENS SERUM INSTITUT

text: public

text: Sweden

text: Escherichia coli

text: Escherichia coli


E-MTAB-6899:Sample 1

text: public

text: E-MTAB-6899:Sample 1

tag: Namespace:Masaryk University, Central European Institute for Technology

text: ArrayExpress

characteristic: broker name

text: development of acute myeloid leukemia

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Peripheral blood was taken into EDTA tube DNA was extracted by 101MagCore Genomic DNA Whole Blood Kit (RBC Bioscience) according to manufacturer instructions SeqCap EZ Library SR (NimbleGen)

text: adult

characteristic: developmental stage

text: myelodysplastic syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: collection date

text: USA

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human

characteristic: isolation source

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


characteristic: ENA-CHECKLIST

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

characteristic: Submitter Id

text: Canada

text: diseased

text: Homo sapiens

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

text: Brazil

text: diseased

text: Homo sapiens

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: External Id

text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: INSDC center name

text: public

text: BRA

text: Mycobacterium

characteristic: genus

text: Brazil

text: Homo sapiens

characteristic: host

text: diseased

text: Homo sapiens

text: human

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

type: AMR curated data - CABBAGE

value: kanamycin

value: susceptible

value: Mycobacterium tuberculosis


text: mixed

text: mixed

text: population

text: wild-type

characteristic: ArrayExpress-PHENOTYPE

text: mixed

characteristic: ArrayExpress-SEX

text: Caenorhabditis brenneri

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Caenorhabditis brenneri

characteristic: common name

text: Mixed

characteristic: gender

text: Caenorhabditis brenneri

characteristic: organism

text: wild-type

characteristic: phenotype

text: Caenorhabditis brenneri

characteristic: subject id

text: Caenorhabditis brenneri


text: Human Gut Bacteria

text: Clostridioides difficile

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Clostridioides difficile

text: Clostridioides difficile

text: Human Gut Bacteria

text: Clostridioides difficile

characteristic: title


E-MTAB-6872:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6872:Sample 1

tag: Namespace:University of Heidelberg  Biochemistry Center (BZH)

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: endothelial cell

characteristic: cell type

text: house mouse

text: Protocols: This dataset was generated by RNA sequencing of whole tibiae of C57Bl/6 mice. For young mice; tibiae from 6-weeks-old mice were used and for aged mice tibiae from 70-weeks-old mice were used. The control, radiation, and chemotherapy samples were generated using 14-weeks-old mice. For radiation treatment; mice were exposed to sublethal irradiation while for chemotherapy samples mice were treated with carboplatin and tibiae were collected. Adult C57BL/6J wild-type mice were whole-body irradiated with a single dose of 900 rads (Gammacell irradiator) and euthanized 5 days later. For chemotherapy, adult C57BL/6J mice were treated with carboplatin or cisplatin as indicated. Both carboplatin and cisplatin were prepared fresh in saline. Carboplatin was injected in traperitoneally 30 mg/kg/mouse thrice each week for six doses. Qiagen RNeasy Plus Micro Kit Illumina TruSeq RNA Library Preparation Kit v2 with RiboZero

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-6872:Sample 2

characteristic: ENA-CHECKLIST

text: University of Heidelberg Biochemistry Center (BZH)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6872:Sample 2

text: ArrayExpress

text: endothelial cell

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 2


E-MTAB-6872:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-6872:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: endothelial cell

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 3

characteristic: title


E-MTAB-6872:Sample 4

characteristic: INSDC center name

text: public

text: E-MTAB-6872:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: endothelial cell

characteristic: cell type

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 4


E-MTAB-6872:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-6872:Sample 5

text: ArrayExpress

text: endothelial cell

text: house mouse

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 5


E-MTAB-6872:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6872:Sample 6

text: ArrayExpress

text: endothelial cell

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 6


E-MTAB-6872:Sample 7

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6872:Sample 7

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: endothelial cell

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 7

characteristic: title


E-MTAB-6872:Sample 8

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: E-MTAB-6872:Sample 8

text: ArrayExpress

characteristic: broker name

text: endothelial cell

characteristic: cell type

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 8


E-MTAB-6872:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6872:Sample 9

text: ArrayExpress

text: endothelial cell

text: house mouse

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 9


E-MTAB-6872:Sample 10

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6872:Sample 10

text: ArrayExpress

text: endothelial cell

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 10


E-MTAB-6872:Sample 11

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-6872:Sample 11

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: endothelial cell

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 11

characteristic: title


E-MTAB-6872:Sample 12

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6872:Sample 12

text: ArrayExpress

characteristic: broker name

text: endothelial cell

characteristic: cell type

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 12


E-MTAB-6872:Sample 13

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6872:Sample 13

text: ArrayExpress

text: endothelial cell

text: house mouse

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 13


E-MTAB-6872:Sample 14

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6872:Sample 14

text: ArrayExpress

text: endothelial cell

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

text: female

text: Sample 14


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ErasmusMC Hematology

text: public

characteristic: SRA accession

tag: Namespace:ErasmusMC Hematology

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: B6.129P2(Cg)-Rorctm2Litt/J (Ror gamma t-GFP) mice were crossed to Lgr5-GFP-IRES-creERT2 (Lgr5-GFP) mice to generate a Ror gamma t-deficient Lgr5 reporter strain. Lgr5GFP/WT x Ror gamma tGFP/GFP (Ror gamma t-deficient) and Lgr5GFP/WT x Ror gamma t+/+ (Ror gamma t-sufficient) mice received two i.p. injections with Methotrexate (MTX) to induce small intestinal damage. Dosages were: day -1: 120 mg/kg, day 0 60 mg/kg. Mice were terminated at days 1 and 4 after the last MTX injection. Mice used: B6.129P2-Lgr5tm1(cre/ERT2)Cle/J; B6.129P2(Cg)-Rorctm2Litt/J or B6.129P2-Lgr5tm1(cre/ERT2)Cle/J. Isolated small intestines were opened longitudinally and washed with cold PBS. 5 mm pieces were washed with cold PBS, incubated in EDTA (2 mM) at 4°C for 30 min and resuspended in PBS. Crypt-enriched sediments were passed through a 70 μm cell strainer and centrifuged at 200 g for 2 min to separate the crypts from single cells. Crypts were incubated with 1 ml of TrypLE Express (Gibco) + Dnase I (Merk Millipore) at 37°C for 10-15 min until crypt dissociation was observed. Single cell suspensions were filtered through 40 μm cell strainer and labeled with conjugated antibodies. EpCAM1+Lgr5-GFPhi crypt cells were sorted to purity on a FACS AriaIII. cDNA was prepared using SMARTer Ultra Low RNA kit (Clontech Laboratories) for Illumina Sequencing following the manufacturer’s protocol. The Agilent 2100 Bio-analyzer and the High Sensitivity DNA kit were applied to determine the quantity and quality of the cDNA production.

text: Rorc(t)-EGFP; Lgr5-GFP-IRES-creERT2

text: Mus musculus

text: Mus musculus

text: crypt of Lieberkuhn

text: Rorc homozygous knockout

characteristic: phenotype

text: Mus musculus

text: male

characteristic: title


characteristic: External Id

text: ErasmusMC Hematology

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Rorc(t)-EGFP; Lgr5-GFP-IRES-creERT2

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: crypt of Lieberkuhn

text: Rorc homozygous knockout

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

text: ErasmusMC Hematology

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: Protocols: 150 µg anti-IL-22 antibody (8E11, Genentech, South San Francisco, CA) or mouse IgG1 isotype control (MOPC-21, BioXCell) were administered i.p to Lgr5-GFP-IRES-creERT2 (Lgr5GFP/WT) mice every 2 days, starting 4 days before the first MTX dose, until day of the last MTX injection. MTX dosages were: day -1: 120 mg/kg, day 0 60 mg/kg. Mice were terminated at day 1 after the last MTX injection. Mice used: B6.129P2-Lgr5tm1(cre/ERT2)Cle/J; B6.129P2(Cg)-Rorctm2Litt/J or B6.129P2-Lgr5tm1(cre/ERT2)Cle/J. Isolated small intestines were opened longitudinally and washed with cold PBS. 5 mm pieces were washed with cold PBS, incubated in EDTA (2 mM) at 4°C for 30 min and resuspended in PBS. Crypt-enriched sediments were passed through a 70 μm cell strainer and centrifuged at 200 g for 2 min to separate the crypts from single cells. Crypts were incubated with 1 ml of TrypLE Express (Gibco) + Dnase I (Merk Millipore) at 37°C for 10-15 min until crypt dissociation was observed. Single cell suspensions were filtered through 40 μm cell strainer and labeled with conjugated antibodies. EpCAM1+Lgr5-GFPhi crypt cells were sorted to purity on a FACS AriaIII. cDNA was prepared using SMARTer Ultra Low RNA kit (Clontech Laboratories) for Illumina Sequencing following the manufacturer’s protocol. The Agilent 2100 Bio-analyzer and the High Sensitivity DNA kit were applied to determine the quantity and quality of the cDNA production.

text: Mus musculus

text: Mus musculus

text: crypt of Lieberkuhn

characteristic: organism part

text: wild type phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: ErasmusMC Hematology

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: crypt of Lieberkuhn

text: wild type phenotype

text: Mus musculus

text: male


characteristic: ENA-LAST-UPDATE

text: ErasmusMC Hematology

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: crypt of Lieberkuhn

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: female


characteristic: External Id

text: ErasmusMC Hematology

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: crypt of Lieberkuhn

text: wild type phenotype

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: NOR

tag: Namespace:Department of Medical Microbiology, Stavanger University Hospital

characteristic: collection date

text: Klebsiella

characteristic: genus

text: Norway

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Urine

characteristic: isolation source

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

value: trimethoprim-sulfamethoxazole

value: EUCAST

value: resistant

value: Klebsiella pneumoniae

value: cefotaxime

value: ceftazidime

value: ciprofloxacin

value: gentamicin

value: meropenem


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Medical Microbiology, Stavanger University Hospital

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Norway

text: diseased

text: Homo sapiens

text: Urine

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

type: Other BioSample


text: Tasmanian devil

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Tasmanian devil

characteristic: common name

text: Sarcophilus harrisii

text: Sarcophilus harrisii

characteristic: subject id

characteristic: title


text: female

characteristic: ArrayExpress-SEX

text: Tasmanian devil

text: SC

characteristic: INSDC first public

text: public

text: Tasmanian devil

text: Female

characteristic: gender

text: Sarcophilus harrisii

text: Sarcophilus harrisii


text: male

text: Tasmanian devil

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Tasmanian devil

text: Male

text: Sarcophilus harrisii

text: Sarcophilus harrisii


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mouse

characteristic: phenotype

text: Mus musculus


E-MTAB-6781:Sample 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6781:Sample 1

tag: Namespace:Wellcome Trust and MRC Cambridge Stem Cell Institute, Department of Surgery, University of Cambridge, UK.

text: ArrayExpress

characteristic: broker name

text: hepatocyte

characteristic: cell type

text: human

text: Protocols: Cells in a 12-well plate were washed once with PBS and then lysed with 350uL/well of RNA lysis buffer provided in the RNA extraction kit (Sigma, Cat No. RTN350-1KT). hIPSC-derived hepatocytes were differentiated to day 35 as outlined in the publication of Hannan et al., Nature Protocols, 2013. More details on the derivation of the hiPSC lines can be found in the protocol text from this publication: Yusa K, Rashid ST, Strick-Marchand H, Varela I, Liu PQ, Paschon DE, Miranda E, Ordóñez A, Hannan NR, Rouhani FJ, Darche S, Alexander G, Marciniak SJ, Fusaki N, Hasegawa M, Holmes MC, Di Santo JP, Lomas DA, Bradley A, Vallier L. Targeted gene correction of α1-antitrypsin deficiency in induced pluripotent stem cells. Nature. 2011 Oct 12;478(7369):391-4. The protocol for RNA extraction followed the manufacturer's manual (Sigma, Cat No. RTN350-1KT). Numerical assessment of the integrity of RNA samples on the Bioanalyzer (Agilent Technologies) revealed very good quality of all samples submitted (RNA integrity numbers = 10). 550ng of total RNA was used for library preparation with the Illumina TruSeq RNA Samples Preparation V2 assay. Total RNA underwent a poly-A-pull down, fragmentation into the desired length (~300bp) and cDNA synthesis through reverse transcription using random primers. cDNA went into end repair, adapter ligation, and a small PCR reaction. The completed samples were non-strand specific, barcoded RNA-seq library, which were checked for quality on the MiSeq (paired-end, 150bp sequencing).

characteristic: description

text: Alpha-1-antitrypsin deficiency

characteristic: disease

text: alpha-1-antitrypsin Z deficiency allele (342GluLys)

characteristic: genotype

text: patient 1

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: not available

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: Sample 1


E-MTAB-6781:Sample 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Wellcome Trust and MRC Cambridge Stem Cell Institute, Department of Surgery, University of Cambridge, UK.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6781:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: human

characteristic: common name

text: Alpha-1-antitrypsin deficiency

text: patient 1

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: not available

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-6781:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6781:Sample 3

text: ArrayExpress

text: hepatocyte

text: human

text: Alpha-1-antitrypsin deficiency

text: patient 1

text: Homo sapiens

text: Homo sapiens

text: not available

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 3


E-MTAB-6781:Sample 4

text: public

text: E-MTAB-6781:Sample 4

text: ArrayExpress

characteristic: broker name

text: hepatocyte

characteristic: cell type

text: human

text: Protocols: Cells in a 12-well plate were washed once with PBS and then lysed with 350uL/well of RNA lysis buffer provided in the RNA extraction kit (Sigma, Cat No. RTN350-1KT). hIPSC-derived hepatocytes were differentiated to day 35 as outlined in the publication of Hannan et al., Nature Protocols, 2013. More details on the derivation of the hiPSC lines can be found in the protocol text from this publication: Yusa K, Rashid ST, Strick-Marchand H, Varela I, Liu PQ, Paschon DE, Miranda E, Ordóñez A, Hannan NR, Rouhani FJ, Darche S, Alexander G, Marciniak SJ, Fusaki N, Hasegawa M, Holmes MC, Di Santo JP, Lomas DA, Bradley A, Vallier L. Targeted gene correction of α1-antitrypsin deficiency in induced pluripotent stem cells. Nature. 2011 Oct 12;478(7369):391-4. The correction of the mutation was done by a combination of zinc finger nucleases and piggyBac. The protocol for RNA extraction followed the manufacturer's manual (Sigma, Cat No. RTN350-1KT). Numerical assessment of the integrity of RNA samples on the Bioanalyzer (Agilent Technologies) revealed very good quality of all samples submitted (RNA integrity numbers = 10). 550ng of total RNA was used for library preparation with the Illumina TruSeq RNA Samples Preparation V2 assay. Total RNA underwent a poly-A-pull down, fragmentation into the desired length (~300bp) and cDNA synthesis through reverse transcription using random primers. cDNA went into end repair, adapter ligation, and a small PCR reaction. The completed samples were non-strand specific, barcoded RNA-seq library, which were checked for quality on the MiSeq (paired-end, 150bp sequencing).

characteristic: description

text: Alpha-1-antitrypsin deficiency

characteristic: disease

text: wild type alpha-1-antitrypsin; corrected in vitro

characteristic: genotype

text: patient 1

text: Homo sapiens

text: Homo sapiens

text: not available

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 4


E-MTAB-6781:Sample 5

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-6781:Sample 5

text: ArrayExpress

text: hepatocyte

text: human

text: Alpha-1-antitrypsin deficiency

text: patient 1

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: not available

characteristic: organism part

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens

text: Sample 5


E-MTAB-6781:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6781:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: human

characteristic: common name

text: Alpha-1-antitrypsin deficiency

text: patient 1

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: not available

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 6


E-MTAB-6781:Sample 7

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6781:Sample 7

text: ArrayExpress

text: hepatocyte

text: human

text: Protocols: Cells in a 12-well plate were washed once with PBS and then lysed with 350uL/well of RNA lysis buffer provided in the RNA extraction kit (Sigma, Cat No. RTN350-1KT). Hepatocytes were isolated through classical collagenase perfusion of the tissue. More details can be found here: Li AP, Roque MA, Beck DJ, Kaminski DL. Isolation and culturing of hepatocytes from human livers. J Tissue Cult Meth. 1992;14:139-146. The protocol for RNA extraction followed the manufacturer's manual (Sigma, Cat No. RTN350-1KT). Numerical assessment of the integrity of RNA samples on the Bioanalyzer (Agilent Technologies) revealed very good quality of all samples submitted (RNA integrity numbers = 10). 550ng of total RNA was used for library preparation with the Illumina TruSeq RNA Samples Preparation V2 assay. Total RNA underwent a poly-A-pull down, fragmentation into the desired length (~300bp) and cDNA synthesis through reverse transcription using random primers. cDNA went into end repair, adapter ligation, and a small PCR reaction. The completed samples were non-strand specific, barcoded RNA-seq library, which were checked for quality on the MiSeq (paired-end, 150bp sequencing).

text: normal

text: wild type alpha-1-antitrypsin

text: normal 1

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 7

characteristic: title


E-MTAB-6781:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-6781:Sample 8

text: ArrayExpress

characteristic: broker name

text: hepatocyte

characteristic: cell type

text: human

characteristic: description

text: Alpha-1-antitrypsin deficiency

characteristic: disease

text: patient 2

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: Sample 8


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Postdoc, EMBL-EBI

text: public

tag: Namespace:Postdoc, EMBL-EBI

characteristic: age

text: ArrayExpress

text: T-helper 2 cell

text: house mouse

text: Protocols: In vitro differentiated and restimulated T helper 2 (Th2) cells (4m8c treated and untreated) were washed with PBS and the cell pellets were used for RNA extraction. Spleens from 6-12 weeks old C57BL/6 mice were used as a source of naive T cells. Splenic naive T helper cells were purified with the CD4+CD62L+T Cell Isolation Kit II (Miltenyi Biotec) and polarized in vitro toward differentiated Th2 subtype as described before in (Mahata et al., 2014). In brief, naive cells were seeded into anti-CD3e (2 μg/ml, clone 145-2C11, eBioscience) and anti-CD28 (5 μg/ml, clone 37.51, eBioscience) antibody coated 96-well round bottom plates. The medium contained the following cytokines and/or antibodies for Th2 subtype: recombinant murine IL-2 (10 ng/ml, R&D Systems), recombinant murine IL-4 (10 ng/ml, R&D Systems) and neutralizing anti-IFN-g (5μg/ml, cloneXMG1.2eBioscience). The cells were removed from the activation plate on day 4 (72 hours). Th2 cells were cultured for another two days in the absence of anti-CD3 and CD28 stimulation. Then, cells were restimulated by anti-CD3e/CD28 coated plate for 6 hrs. For flow cytometric detection cells were treated with monensin (2μM, eBioscience) for the last 3 hours. Negatively selected splenic naïve T helper cells were activated by TCR activation in the anti-CD3e/CD28 coated plates under Th2 differentiation condition for 72 hours, rested 42 hours and restimulated by TCR activation using anti-CD3e/CD28 coated plates. 15uM 4m8c was added to the culture media RNA was purified using the Qiagen RNEasy Plus Mini Kit automated using a QIAcube Samples were processed using the TruSeq RNA Sample Prep v2 kit (Illumina) according to the manufacturers instructions with an alteration to use KAPA Hifi polymerase for PCR amplification instead of the one supplied with the kit.

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: naive T cell

text: Mus musculus

text: male

characteristic: sex

text: TCR activation

characteristic: stimulus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Postdoc, EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: naive T cell

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: male


text: Yeast

characteristic: ArrayExpress-Phenotype

text: Saccharomyces cerevisiae

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: title


characteristic: External Id

text: LINNAEUS UNIVERSITY

text: public

unit: practical salinity unit

characteristic: Salinity Sensor

tag: Namespace:LINNAEUS UNIVERSITY

unit: m

characteristic: depth

text: Impact of eukaryote metabolism on associated bacterial metagenome

characteristic: description

text: water

characteristic: environment (biome)

text: brackish water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: latitude start

characteristic: longitude start

text: Baltic Sea

characteristic: marine region

text: marine metagenome

text: Föglö coastal metabolism

characteristic: project name

text: DNA

characteristic: protocol label

text: Föglö nitrogen

characteristic: sampling campaign

text: Boat

characteristic: sampling platform

text: Lill�ng�

characteristic: sampling station

text: marine metagenome

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

unit: ºC

characteristic: temperature

text: Metagenome Baltic Sea


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LINNAEUS UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

characteristic: description

text: water

text: water

text: water

text: water

text: Baltic Sea

text: marine metagenome

characteristic: organism

text: Föglö coastal metabolism

text: DNA

text: Föglö nitrogen

text: Boat

text: Lill�ng�

text: marine metagenome

text: Metagenome Baltic Sea

characteristic: title


E-MTAB-6923:Sample 1

text: public

text: E-MTAB-6923:Sample 1

tag: Namespace:Nara Institute of Science and Technology

text: ArrayExpress

characteristic: broker name

text: baker's yeast

characteristic: common name

text: Protocols: Cells were collected from liquid culture by centrifugation (1,500 xg; 1min) Yeast cells were shaken in standard synthetic dextrose (SD) medium at 30 C (starting OD600 0.3). Culture was continued for 8 hours, and cells reached the diauxic-shift phase. Total RNA was extracted for yeast cells using standard hot phenol method. Residual DNA was digested using DNase I (Takara). Library construction and sequencing for the Illumina HiSeq 2500 was provided as a custom service of Eurofins Genomics K. K. (Tokyo, Japan). The polyA fraction (mRNA) was isolated from total RNA, followed by its fragmentation. Then double-stranded (ds) cDNA was reverse transcribed from fragmented mRNA. The ds cDNA fragments were processed for adaptor ligation, size selection (for 200 bp inserts) and amplification to generate strand-specific cDNA libraries.

text: wild type genotype

characteristic: genotype

text: synthetic dextrose medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: Sample 1


E-MTAB-6923:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nara Institute of Science and Technology

text: public

text: E-MTAB-6923:Sample 2

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: synthetic dextrose medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 2


E-MTAB-6923:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6923:Sample 5

text: ArrayExpress

text: baker's yeast

text: Protocols: Cells were collected from liquid culture by centrifugation (1,500 xg; 1min) Yeast cells were shaken in standard synthetic dextrose (SD) medium at 30 C (starting OD600 0.3). Tunicamycin (2ug/ml final concentration) was added to exponentially growing cultures, which were further incubated for 1 hour. Total RNA was extracted for yeast cells using standard hot phenol method. Residual DNA was digested using DNase I (Takara). Library construction and sequencing for the Illumina HiSeq 2500 was provided as a custom service of Eurofins Genomics K. K. (Tokyo, Japan). The polyA fraction (mRNA) was isolated from total RNA, followed by its fragmentation. Then double-stranded (ds) cDNA was reverse transcribed from fragmented mRNA. The ds cDNA fragments were processed for adaptor ligation, size selection (for 200 bp inserts) and amplification to generate strand-specific cDNA libraries.

text: wild type genotype

text: synthetic dextrose medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 5


E-MTAB-6923:Sample 6

text: public

characteristic: SRA accession

text: E-MTAB-6923:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: baker's yeast

text: wild type genotype

text: synthetic dextrose medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 6


E-MTAB-6923:Sample 3

text: public

text: E-MTAB-6923:Sample 3

text: ArrayExpress

text: baker's yeast

characteristic: description

text: synthetic dextrose medium

text: Saccharomyces cerevisiae

characteristic: organism

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 3


E-MTAB-6923:Sample 4

text: public

text: E-MTAB-6923:Sample 4

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: synthetic dextrose medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 4

characteristic: title


E-MTAB-6923:Sample 7

text: public

text: E-MTAB-6923:Sample 7

text: ArrayExpress

text: baker's yeast

characteristic: common name

characteristic: genotype

text: synthetic dextrose medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Sample 7


E-MTAB-6923:Sample 8

text: public

text: E-MTAB-6923:Sample 8

text: ArrayExpress

text: baker's yeast

text: synthetic dextrose medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

characteristic: strain

text: Sample 8


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF EXETER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF EXETER

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: 76.3 genomic sequence


text: UNIVERSITY OF EXETER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: 82.0835 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

characteristic: organism

text: Magnaporthe oryzae

text: 87.120.2 genomic sequence

characteristic: title


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: 90.4.1 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: GLHN3 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: GLHN4 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Guy11 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: Ina168 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Pyricularia pennisetigena

text: Pyricularia pennisetigena

text: PM1 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TH3 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: VO104 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: VO108 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: VO113 genomic sequence


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe grisea

text: Magnaporthe grisea

text: VO107 genomic sequence


text: LSHTM

text: public

text: gDNA isolation from pit latrine faeces

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: latrine detail

text: manure metagenome

text: manure metagenome

text: 16S sequencing of pit latrine sample


text: LSHTM

text: public

text: gDNA isolation from pit latrine faeces

text: Tanzania

text: blank

text: manure metagenome

text: manure metagenome

text: 16S sequencing of pit latrine sample


text: UNIVERSITY OF BIRMINGHAM

text: public

tag: Namespace:UNIVERSITY OF BIRMINGHAM

text: Escherichia coli ATCC 25922

characteristic: common name

text: Selection-free continuous culture at day 1; gDNA extracted from overnight culture

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch3 D1 CL


tag: attribute

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli ATCC 25922

text: Levofloxacin-selection continuous culture at day 14; gDNA extracted from overnight culture

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch1 D14 CL


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli ATCC 25922

text: New biocide-selection continuous culture at day 14; gDNA extracted from 4°C sample

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch2 D14 4°C


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli ATCC 25922

text: Selection-free continuous culture at day 14; gDNA extracted from overnight culture

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch3 D14 CL


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli ATCC 25922

text: Levofloxacin-selection continuous culture at day 20; gDNA extracted from overnight culture

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch1 D20 CL


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli ATCC 25922

text: New biocide-selection continuous culture at day 20; gDNA extracted from overnight culture

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch2 D20 CL


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli ATCC 25922

text: Selection-free continuous culture at day 20; gDNA extracted from overnight culture

text: Escherichia coli ATCC 25922

text: Escherichia coli ATCC 25922

text: Ch3 D20 CL


text: LSHTM

text: public

text: gDNA isolation from pit latrine faeces

text: Tanzania

text: manure metagenome

text: manure metagenome

text: Methanogen sequencing of pit latrine sample


text: UNAM

text: public

text: Transcriptome analysis of the venom gland of Paravaejovis schwenkmeyeri by RNA-seq

text: Paravaejovis schwenkmeyeri

text: Paravaejovis schwenkmeyeri


R. schineideri mucous gland

text: public

text: R. schineideri mucous gland

tag: Namespace:School of Pharmaceutical Sciences of Ribeirao Pret

text: Cururu toad

text: Rhinella schineideri mucous gland analyzed by RNA-seq

text: adult

characteristic: dev stage

text: Brazil

text: Rhinella schneideri

text: Rhinella schneideri

text: male

characteristic: sex

text: mucous gland

characteristic: tissue type

text: R. schineideri mucous gland (transcriptome)


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Mouse

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: FUNCTIONAL GENOMICS CENTER ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:FUNCTIONAL GENOMICS CENTER ZURICH

characteristic: Submitter Id

text: cassava

text: Manihot esculenta

characteristic: organism

text: Manihot esculenta

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: STATENS SERUM INSTITUT

text: public

characteristic: description

text: Illumina MiSeq

characteristic: instrument model

text: Campylobacter jejuni

characteristic: read length

text: Campylobacter jejuni


characteristic: ENA-LAST-UPDATE

text: STATENS SERUM INSTITUT

text: public

text: NextSeq 500

text: Campylobacter jejuni

text: Campylobacter jejuni


text: T regulatory cell

text: male

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

text: human

characteristic: common name

text: Male

characteristic: gender

text: Homo sapiens

text: Homo sapiens


text: T regulatory cell

text: Homo sapiens

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: T regulatory cell

text: female

text: Homo sapiens

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Female

text: Homo sapiens

characteristic: organism

text: Homo sapiens


text: male

text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Male

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: Homo sapiens

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: female

characteristic: ArrayExpress-SEX

text: Homo sapiens

text: SC

text: public

text: human

text: Female

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:Centre for Genome Enabled Biology and Medicine University of Aberdeen

text: 25 to 26

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mice culled by anaesthetizing with isofluorane followed by cervical dislocation. Brain removed by cutting coronally at approximately bregma -0.1 and -3.0. The slice was orientated with the caudal side face up and a hypothalamic punch of 3 mm in diameter was taken from the ventral aspect. Punches were transferred to a microfuge tube immediately and frozen on dry ice. Tissue was stored at -70 degrees Celsius until processed. Sixteen wild type C57BL/6J mice, 3-4 weeks old (Harlan), singly housed and acclimatized (12:12 light:dark) on low fat diet (10% fat) for two weeks. Eight mice then switched to high fat diet (60% fat) and eight mice remain on low fat diet (10% fat). Diets continued for 20 weeks. RNA was extracted from the whole hypothalamic block using Machery-Nagel RNA isolation kit as per manufacturer's instructions. Libraries were prepared for sequencing using the Illumina TruSeq Stranded mRNA kit.

characteristic: description

text: high fat diet

characteristic: diet

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hypothalamus

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: External Id

text: Centre for Genome Enabled Biology and Medicine University of Aberdeen

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 25 to 26

text: ArrayExpress

text: house mouse

characteristic: common name

text: high fat diet

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

text: 25 to 26

text: ArrayExpress

text: house mouse

text: low fat diet

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: male

characteristic: title


text: STATENS SERUM INSTITUT

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: STATENS SERUM INSTITUT

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: STATENS SERUM INSTITUT

text: public

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: LINNAEUS UNIVERSITY

text: public

characteristic: Salinity Sensor

characteristic: depth

text: Metatranscripts from Euk and Pro fraction of Föglö study

characteristic: description

text: water

characteristic: environment (biome)

text: water

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: latitude start

characteristic: longitude start

text: Baltic Sea

characteristic: marine region

text: marine metagenome

characteristic: project name

text: Metatranscriptome

characteristic: protocol label

text: Föglö

characteristic: sampling campaign

text: Boat

characteristic: sampling platform

text: Lill�ng�

characteristic: sampling station

text: marine metagenome

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

characteristic: temperature


E-MTAB-6932:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6932:Sample 2

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: spermatid

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Spermatogenic cell populations were isolated from adult mouse testes as described in Ernst et al. (2016). In brief, the albuginea was removed and tissue was incubated in dissociation buffer containing 25mg/ml Collagenase A, 25mg/ml Dispase II and 2.5mg/ml DNase I for 30 minutes at 37C. Enzymatic digestion was quenched with Dulbecco’s Modified Eagle Medium (DMEM, Gibco) supplemented with 10% Fetal calf serum (FCS, 10270106, Gibco). Cells were resuspended at a concentration of 1 million cells per ml and stained with Hoechst 33342 (H3570, ThermoFisher Scientific) at a final concentration of 5ug/ml for 45 minutes at 37C. Cells were resuspended in PBS containing 1% FCS and 2mM EDTA and propidium iodide was added to a final concentration of 1ug/ml prior to sorting. Cells were sorted on an Aria IIu cell sorter (Becton Dickinson) using a 100um nozzle. Hoechst was excited with a UV laser at 355nm and fluorescence was recorded with a 424/44 filter (Hoechst blue) and 675LP filter (Hoechst red). Primary spermatocytes (4N) and round spermatids (1N) were sorted and collected in PBS containing 1% FCS and 2mM EDTA. Cells were spun down at 600g for 3 minutes in swinging-bucket rotor and washed twice with 1.5 mL Wash buffer (20mM HEPES-KOH (pH 7.5), 150 mM NaCl, 0.5mM Spermidine and 1X cOmplete™ EDTA-free protease inhibitor cocktail (Roche)). During the cell washes, concanavalin A-coated magnetic beads (Bangs Laboratories, cat. No BP531) (10 ul per condition) were washed twice in 1.5 mL Binding Buffer (20mM HEPES-KOH (pH 7.5), 10mM KCl, 1mM CaCl, 1mM MnCl2) and resuspended in 10 ul Binding Buffer per condition. Cells were then mixed with beads and rotated for 10 minutes at room temperature (RT) and samples were split into aliquots according to number of antibodies profiled per cell type. We used 20.000-30.000 spermatocytes and 40.000-60.000 spermatids per chromatin mark. Cells were then collected on magnetic beads and resuspended in 50ul Antibody Buffer (Wash buffer with 0.05% Digitonin and 2 mM EDTA) containing one of the following antibodies in 1:100 dilution: H3K4me3 (Millipore 05-1339 CMA304, Lot2780484), H3K27ac (Abcam, ab4729, Lot GR3187598-1) and H3K9me3 (Abcam, ab8898, Lot GR306402-1). Cells were incubated with antibodies for 10 minutes at RT and then washed once with 1mL Digitonin buffer (Wash buffer with 0.05% Digitonin). For the mouse anti-H3K4me3 antibody, samples were incubated with a 1:100 dilution in Digitonin buffer of secondary rabbit anti-mouse antibody (Invitrogen, A27033, Lot RG240909) for 10 minutes at RT and then washed once with 1 mL Digitonin buffer. Samples were then incubated with 700 ng/ml Protein A-MNase fusion protein (kindly provided by Steven Henikoff) for 10 minutes at room temperature followed by two washes with 1mL Digitonin buffer. Cells were resuspended in 100ul Digitonin buffer and cooled down to 4C before addition of CaCl2 to a final concentration of 2mM. Targeted digestion was performed for 30 minutes on ice until 100ul of 2X STOP buffer (340mM NaCl, 20mM EDTA, 4mM EGTA, 0.02% Digitonin, 250mg RNase A, 250ug Glycogen, 15pg/ml yeast spike-in DNA(kindly provided by Steven Henikoff)) were added. Cells were then incubated at 37C for 10 minutes to release cleaved chromatin fragments, spun down for 5 minutes at 16,000g at 4C and collected on magnet. Supernatant containing the cleaved chromatin fragments were then transferred and cleaned up using the Zymo Clean & Concentrator Kit. Library preparation was performed using the ThruPLEX DNA-Seq Library Preparation Kit with a modified Library Amplification programme: Extension and cleavage for 3 minutes at 72C followed by 2 minutes at 85C, denaturation for 2 minutes at 98C followed by four cycles of 20 seconds 98C, 20 seconds 67C and 40 seconds 72C for the addition of indexes. Amplification was then performed for 12-14 cycles of 20 seconds 98C and 15 seconds 72C. Average library size was tested using an Agilent Tapestation DNA1000 High Sensitivity Screentape and quantification was performed using the KAPA Library Quantification Kit.

characteristic: description

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 2

characteristic: title


E-MTAB-6932:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6932:Sample 4

text: ArrayExpress

text: spermatid

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: Sample 4


E-MTAB-6932:Sample 6

text: EMBL-European Bioinformatics Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6932:Sample 6

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: spermatid

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: Sample 6


E-MTAB-6932:Sample 8

text: EMBL-European Bioinformatics Institute

text: public

text: E-MTAB-6932:Sample 8

text: ArrayExpress

text: spermatid

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: Sample 8


E-MTAB-6932:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-European Bioinformatics Institute

text: public

text: E-MTAB-6932:Sample 1

text: ArrayExpress

text: spermatocyte

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-6932:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-European Bioinformatics Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6932:Sample 3

text: ArrayExpress

text: spermatocyte

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: Sample 3


E-MTAB-6932:Sample 5

text: EMBL-European Bioinformatics Institute

text: public

characteristic: SRA accession

text: E-MTAB-6932:Sample 5

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: spermatocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: Sample 5


E-MTAB-6932:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EMBL-European Bioinformatics Institute

text: public

text: E-MTAB-6932:Sample 7

text: ArrayExpress

text: spermatocyte

text: house mouse

characteristic: description

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: Sample 7


text: Vibrio cholerae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

characteristic: subject id

characteristic: title


text: UNIVERSITY OF BIRMINGHAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Escherichia coli

text: Selection-free continuous culture at day 1

text: Escherichia coli

text: Escherichia coli

text: Ch3 D1


text: UNIVERSITY OF BIRMINGHAM

text: public

characteristic: Submitter Id

text: Escherichia coli

characteristic: common name

text: Levofloxacin-selection continious culture at day 14

text: Escherichia coli

text: Escherichia coli

text: Ch1 D14


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli

text: New biocide-selection continious culture at day 14

text: Escherichia coli

text: Escherichia coli

text: Ch2 D14


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli

text: Selection-free continuous culture at day 14

characteristic: description

text: Escherichia coli

text: Escherichia coli

text: Ch3 D14


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli

text: Levofloxacin-selection continious culture at day 20

text: Escherichia coli

text: Escherichia coli

text: Ch1 D20


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli

text: New biocide-selection continious culture at day 20

text: Escherichia coli

text: Escherichia coli

text: Ch2 D20


text: UNIVERSITY OF BIRMINGHAM

text: public

text: Escherichia coli

text: Selection-free continuous culture at day 20

text: Escherichia coli

text: Escherichia coli

text: Ch3 D20


text: Universite Cote d'Azur, Inserm, CNRS

text: public

tag: Namespace:Universite Cote d'Azur, Inserm, CNRS

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in solution.

text: L1.3 retrotransposon

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

characteristic: replicate

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universite Cote d'Azur, Inserm, CNRS

text: public

text: ArrayExpress

text: human

text: Protocols: Cells were transfected with a plasmid-borne L1.3 element carrying a NeoR-based retrotransposition cassette and selected by G418 for 10 days. Genomic DNA was extracted using a QiaAmp DNA Blood mini kit (Qiagen) ATLAS-seq-neo libraries were prepared by random mechanical fragmentation of the genomic DNA to ensure high-coverage, ligation of adapter sequences, and suppression PCR-amplification of the 3' end L1 junction with its flanking genomic sequence. The primers used for suppression PCR specifically targets the engineered element and not endogenous copies as in the original ATLAS-seq protocol (Philippe et al. eLife 2016), and are fused to Ion Torrent-specific A and trP1 primers. Libraries are oriented with reads directed from the flanking sequence to the L1 3' end (reads have the following structure: 5'-A-barcode-linker-flank-poly(dT)-L1-trP1-3'). This library construction protocol used suppression PCR reactions performed in emulsion using a QX200 (Bio-Rad) droplet generator.

text: L1.3 retrotransposon

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


text: EMBL-European Bioinformatics Institute

characteristic: INSDC center name

text: public

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: Testes from prepubertal C57/BL6J mice ranging between postnatal day 6 and 35 were flash frozen or directly used for RNA extraction using Trizol (Thermo Fisher, 15596026) following manufacturer’s instructions. Purified RNA was DNase-treated using the TURBO DNA-free Kit according to manufacturer’s instructions (Thermo Fisher, AM1907) and RNA quality was assessed using the Agilent Tapestation RNA Screentape. 800ng of DNA-depleted RNA were used for RNA-Seq library preparation using the TruSeq Stranded Total RNA Library Kit with Ribo-Zero Gold for cytoplasmic and mitochondrial ribosomal RNA removal according to manufacturer’s instructions (Illumina, RS-122-2303).

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


text: CEH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: metagenome

characteristic: common name

text: A field-based mesocosm experiment to investigate how plant communities moderate belowground response top drought. Treatments consisted of different dominant species and levels of evenness of four common grassland species, which were subjected to a drought. Drought and control responses of plant communities, soil microbial communities, and ecosystem processes were sampled over time (before drought, at the end of the drought, one week recovery, two months recovery).

text: yes

characteristic: drought

text: Terrestrial

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: time point

text: Grassland drought experiment sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

characteristic: description

text: no

text: Terrestrial

text: Grassland

text: Soil

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq

text: soil

text: Grassland drought experiment sample

characteristic: title


text: synthetic construct

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: synthetic construct

characteristic: common name

text: synthetic construct

text: synthetic construct

characteristic: subject id


text: public

tag: Namespace:Heinrich Pette Institute, Leibniz Institute for Experimental Virology

text: Rhesus monkey

text: Primary rhesus fibroblasts infected with Japanese Macaque Rhadinovirus (JMRV, taxid 272551). Small RNAs isolated from transfected cultures were sequenced and mapped against the viral genome (accession AY528864.1) or the human transcriptome (ENSEMBL release-91 GRCh38 cDNA and non-coding RNA sequences; note that, for simplicity, we used the same transcriptome reference as for HEK293 cells transfected with our miDGE libraries).

text: Macaca mulatta

text: Macaca mulatta

text: JMRV-infected primary rhesus fibroblasts


text: Heinrich Pette Institute, Leibniz Institute for Experimental Virology

text: public

text: human

text: HEK293 cells transfected with a miDGE library generated from a cosmid containing nts 83,148 to 119,569 of Japanese Macaque Rhadinovirus (JMRV, taxid 272551). Small RNAs isolated from transfected cultures were sequenced and mapped against the viral genome (accession AY528864.1) or the host transcriptome (ENSEMBL release-91 GRCh38 cDNA and non-coding RNA sequences).

text: Homo sapiens

text: Homo sapiens

text: HEK293 cells transfected with JMRV mIDGE library


text: public

text: human

text: HEK293 cells transfected with miDGE libraries representing 113 papillomavirus and two positive control polyomavirus genomes. Small RNAs isolated from transfected cultures were sequenced and mapped against the viral genomes (see accession numbers below) or the host transcriptome (ENSEMBL release-91 GRCh38 cDNA and non-coding RNA sequences). Viral genome accesion numbers: CdPV1 (NC_015267.1), CdPV2 (NC_015268.1), DdPV (GU117620.1), EHPV1 (FJ379293.1), FcPV1 (NC_004068.1), FdPV1 (NC_004765.1), HPV1 (NC_001356.1), HPV2 (NC_001352.1), HPV3 (X74462.1), HPV4 (NC_001457.1), HPV5 (NC_001531.1), HPV6b (NC_001355.1), HPV7 (NC_001595.1), HPV8 (M12737.1), HPV9 (NC_001596.1), HPV10 (NC_001576.1), HPV11 (M14119.1), HPV12 (X74466.1), HPV13 (X62843.1), HPV15 (X74468.1), HPV16 (NC_001526.2), HPV17 (X74469.1), HPV18 (NC_001357.1), HPV19 (X74470.1), HPV20 (U31778.1), HPV21 (U31779.1), HPV22 (U31780.1), HPV23 (U31781.1), HPV24 (U31782.1), HPV26 (NC_001583.1), HPV27 (X74473.1), HPV28 (U31783.1), HPV29 (U31784.1), HPV30 (X74474.1), HPV31 (J04353.1), HPV32 (NC_001586.1), HPV33 (M12732.1), HPV34 (NC_001587.1), HPV36 (U31785.1), HPV37 (U31786.1), HPV38 (U31787.1), HPV39 (M62849.1), HPV40 (X74478.1), HPV41 (NC_001354.1), HPV42 (GQ472847.1), HPV45 (X74479.1), HPV47 (M32305.1), HPV48 (NC_001690.1), HPV49 (NC_001591.1), HPV50 (NC_001691.1), HPV51 (M62877.1), HPV52 (X74481.1), HPV53 (NC_001593.1), HPV54 (NC_001676.1), HPV57 (X55965.1), HPV58 (D90400.1), HPV59 (X77858.1), HPV63 (NC_001458.1), HPV65 (X70829.1), HPV66 (U31794.1), HPV67 (D21208.1), HPV68a (DQ080079.1), HPV69 (AB027020.1), HPV70 (U21941.1), HPV71 (AB040456.1), HPV72 (X94164.1), HPV74 (AF436130.1), HPV75 (Y15173.1), HPV76 (Y15174.1), HPV81 (AJ620209.1), HPV82 (AB027021.1), HPV92 (NC_004500.1), HPV93 (AY382778.1), HPV94 (AJ620211.1), HPV96 (NC_005134.2), HPV98 (FM955837.2), HPV99 (FM955838.1), HPV100 (FM955839.1), HPV104 (FM955840.1), HPV105 (FM955841.1), HPV107 (EF422221.1), HPV108 (NC_012213.1), HPV109 (NC_012485.1), HPV110 (EU410348.1), HPV111 (EU410349.1), HPV112 (NC_012486.1), HPV113 (FM955842.1), HPV117 (GQ246950.1), HPV118 (GQ246951.1), HPV125 (FN547152.2), HPV127 (HM011570.1), HPV128 (NC_014952.1), HPV129 (NC_014953.1), HPV130 (GU117630.1), HPV131 (NC_014954.1), HPV132 (NC_014955.1), HPV133 (GU117633.1), HPV134 (NC_014956.1), HPV148 (GU129016.1), HPV149 (GU117629.1), HPV14D (X74467.1), HPV150 (FN677755.1), HPV151 (FN677756.1), LrPV1 (AY904722.1), PePV (AF420235.1), PlpPV1 (AY904724.1), PpPV1 (NC_018074.1), RhPV1 (NC_001678.1), RnPV1 (GQ180114.1), SsPV1 (EF395819.1), TtPV1 (NC_011109.1), UmPV1 (NC_010739.1), UuPV1 (DQ180494.1), MCPyV (NC_010277.1), SV40 (NC_001669.1).

text: Homo sapiens

text: Homo sapiens

text: HEK293 cells transfected with papillomavirus mIDGE library


text: Plasmodium falciparum

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: INSTITUT PASTEUR DE PARIS

text: public

tag: Namespace:INSTITUT PASTEUR DE PARIS

characteristic: collection date

text: Bacterial culture

text: Tunisia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: nasopharynx

characteristic: isolation source

text: Whooping cough Nat. Ref. Center, Institut Pasteur, Paris

characteristic: lab host

text: Bordetella pertussis

text: Bordetella pertussis

text: Bordetella pertussis strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STPH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: MTBC


text: Auckland University of Technology

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Auckland University of Technology

characteristic: Submitter Id

text: 16S rRNA gene amplicon from envrionmental DNA extracted from soil sample, Spaulding Pond, Taylor Valley, Antarctica

characteristic: description

text: Yes

characteristic: environmental sample

text: Antarctica

text: Spaulding Pond, Taylor Valley, McMurdo Dry Valleys

characteristic: geographic location (region and locality)

text: uncultured prokaryote

characteristic: organism

text: uncultured prokaryote

text: Antarctic hyporheic zone

characteristic: title


text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles funestus

text: Anopheles funestus

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CEH

text: public

characteristic: collection date

text: metagenome

text: ITS amplicons from a field-based mesocosm experiment to investigate how plant communities moderate belowground response top drought. Treatments consisted of different dominant species and levels of evenness of four common grassland species, which were subjected to a drought. Drought and control responses of plant communities, soil microbial communities, and ecosystem processes were sampled over time (before drought, at the end of the drought, one week recovery, two months recovery).

text: yes

characteristic: drought

text: Terrestrial

characteristic: environment (biome)

text: Grassland

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: time point

text: Grassland drought experiment sample, ITS amplicon


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: metagenome

characteristic: common name

characteristic: description

text: no

text: Terrestrial

text: Grassland

text: Soil

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq

text: soil

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Postdoc

text: public

text: ArrayExpress

characteristic: broker name

text: baker's yeast

text: Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean & Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean & Concentrator -5 Kit).

text: Ribosome protected fragments 25-34nt

characteristic: fraction

characteristic: genotype

text: synthetic drop-out medium

characteristic: growth condition

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: eEF3 depletion driven by methionine repressible MET25 promoter

characteristic: phenotype

text: Ribo-Seq

characteristic: protocol

text: Saccharomyces cerevisiae


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFREMER

characteristic: INSDC center name

text: public

text: Oysters contamination

text: Norovirus 02/2010/Nanjing

text: Norovirus 02/2010/Nanjing

text: bioacc-exp


text: Postdoc

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: baker's yeast

text: rRNA-depleted total RNA

text: synthetic drop-out medium

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae

text: RNA-Seq

text: Saccharomyces cerevisiae


text: UNIVERSITY OF EXETER

text: public

characteristic: Submitter Id

text: Rice blast fungus isolated in Egypt

characteristic: description

text: Magnaporthe oryzae

characteristic: organism

text: Magnaporthe oryzae

text: EG308 genomic DNA


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE002 genomic DNA

characteristic: title


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE016 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE017 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE019 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE021 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE029 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Burkina Faso

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: BF5 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: BF17 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: BF32 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: BF48 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Benin

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: BN0293 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Control strain from U.S.A.

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: JUM1 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE041 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE210 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE255 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Nigeria

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: NG0104 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Nigeria

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: NG0110 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Nigeria

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: NG0135 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Nigeria

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: NG0153 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Togo

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TG004 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Tanzania

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: TZ090 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Uganda

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: UG08 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE332 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE415 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE443 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE473 genomic DNA


text: UNIVERSITY OF EXETER

text: public

text: Rice blast fungus isolated in Kenya

text: Magnaporthe oryzae

text: Magnaporthe oryzae

text: KE491 genomic DNA