text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: PNEUMONIA

text: male

text: BLOOD

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: mg/L


status: PUBLIC

text: 31003929; 34609274

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: MENINGITIS

characteristic: host status

text: female

characteristic: isolate

text: CSF

characteristic: isolation source

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain

type: AMR curated data - CABBAGE

value: chloramphenicol

value: CLSI

value: disk diffusion

value: susceptible

value: Streptococcus pneumoniae

value: tetracycline

value: resistant

value: penicillin

value: broth dilution

value: clindamycin

value: levofloxacin

value: vancomycin

value: trimethoprim-sulfamethoxazole

value: erythromycin

value: rifampin


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: BACTERAEMIA

text: male

text: BLOOD

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: MENINGITIS

text: female

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

characteristic: host status

text: female

characteristic: isolate

text: CSF

characteristic: isolation source

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain

value: intermediate


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

text: female

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: BACTERAEMIA

text: female

text: BLOOD

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

text: Homo sapiens

text: PNEUMONIA

characteristic: host status

text: female

characteristic: isolate

text: PLEURAL FLUID

characteristic: isolation source

text: internal organs and fluids

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: RUS

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Russia

characteristic: country

text: Streptococcus

text: Homo sapiens

text: meningitis

text: male

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: mm


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RUS

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Russia

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: meningitis

text: male

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: RUS

text: Streptococcus pneumoniae

text: Russia

text: Streptococcus

text: Homo sapiens

text: nasopharyngitis

characteristic: host status

text: female

characteristic: isolate

text: nasopharyngeal swab

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain

value: CLSI


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BLR

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Belarus

characteristic: country

text: Streptococcus

text: Homo sapiens

text: acute otitis media

text: male

text: middle ear fluid

text: eye and ear

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: mg/L


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: PNEUMONIA

text: female

text: BLOOD

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human

value: disk diffusion

value: susceptible


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

characteristic: host status

characteristic: isolate

text: CSF

characteristic: isolation source

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain

value: Streptococcus pneumoniae

value: tetracycline


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: PNEUMONIA

text: male

text: BLOOD

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: resistant

value: penicillin


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: MENINGITIS

text: female

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human

value: clindamycin

value: broth dilution


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

characteristic: host status

text: male

characteristic: isolate

text: CSF

characteristic: isolation source

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain

value: vancomycin

value: levofloxacin


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

text: male

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: trimethoprim-sulfamethoxazole

value: erythromycin


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: RUS

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Russia

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: meningitis

text: male

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: RUS

text: Streptococcus pneumoniae

text: Russia

text: Streptococcus

text: Homo sapiens

text: nasopharyngitis

characteristic: host status

text: female

characteristic: isolate

text: nasopharyngeal swab

characteristic: isolation source

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

text: female

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: rifampin


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: MENINGITIS

text: female

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

text: Homo sapiens

text: MENINGITIS

characteristic: host status

text: male

characteristic: isolate

text: CSF

characteristic: isolation source

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: PNEUMONIA

text: male

text: BLOOD

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: MENINGITIS

text: male

text: CSF

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: 31003929; 34609274

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Brazil

text: Streptococcus

text: Homo sapiens

text: PNEUMONIA

characteristic: host status

text: female

characteristic: isolate

text: PLEURAL FLUID

characteristic: isolation source

text: internal organs and fluids

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: 31003929; 34609274

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: BRA

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Brazil

characteristic: country

text: Streptococcus

text: Homo sapiens

text: BACTERAEMIA

text: male

text: BLOOD

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title

value: intermediate


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BLR

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Belarus

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: carriage

text: female

text: NP swab

text: respiratory tract

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human

value: chloramphenicol


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: Streptococcus pneumoniae

text: Bangladesh

text: Meningitis

characteristic: host status

text: Blood

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: Bangladesh

characteristic: country

text: IPD

text: Blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Bangladesh

text: Pneumonia

text: Blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: Streptococcus pneumoniae

text: Bangladesh

text: Meningitis

characteristic: host status

text: CSF

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

text: Bangladesh

text: Severe Pneumonia

text: Blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human

characteristic: strain

characteristic: sub strain


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Streptococcus pneumoniae

characteristic: common name

text: Bangladesh

characteristic: country

text: Sepsis

text: Blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Klebsiella pneumoniae

text: Thailand

text: not available

text: not available

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: Human


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica serovar Typhimurium str. 10433_3


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Mycolicibacterium thermoresistibile

characteristic: culture collection

text: Soil

characteristic: isolation source

text: Mycolicibacterium thermoresistibile

text: Mycolicibacterium thermoresistibile


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Actinomyces slackii

text: not available: to be reported later

characteristic: host status

text: Dental plaque

text: Actinomyces slackii

text: Actinomyces slackii

text: not available: to be reported later

characteristic: serovar

text: Bovine (Dairy Cow)

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: Rhodococcus gordoniae

characteristic: common name

text: disease

text: Blood

text: Rhodococcus gordoniae

characteristic: organism

text: Rhodococcus gordoniae

text: not available: to be reported later

text: Human

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Burkholderia oklahomensis

text: not available: to be reported later

text: not available: to be reported later

text: Burkholderia oklahomensis

text: Burkholderia oklahomensis

text: not available: to be reported later

text: not available: to be reported later


text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Staphylococcus muscae

text: Czech Republic

characteristic: country

characteristic: culture collection

text: Body surface

characteristic: isolation source

text: Staphylococcus muscae

text: Staphylococcus muscae

text: Fly


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

text: Kingella denitrificans

text: USA: Atlanta, GA

text: not available: to be reported later

characteristic: host status

text: Pharynx

text: Kingella denitrificans

text: Kingella denitrificans

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: Fusobacterium nucleatum subsp. vincentii

characteristic: common name

text: France: Lille

text: not available: to be reported later

text: Upper Jaw

characteristic: organism

text: not available: to be reported later

text: Human

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Wolinella succinogenes

text: not available: to be reported later

text: Rumen

text: Wolinella succinogenes

text: Wolinella succinogenes

text: not available: to be reported later

text: Bovine


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: collection date

text: Cutibacterium granulosum

characteristic: culture collection

text: Cutibacterium granulosum

text: Cutibacterium granulosum


text: SC

text: public

text: Legionella maceachernii

text: Evaporator

characteristic: isolation source

text: Legionella maceachernii

text: Legionella maceachernii

text: not available: to be reported later

characteristic: serovar

text: environmental

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: Legionella spiritensis

characteristic: common name

text: USA

characteristic: country

text: Lake Water

text: Legionella spiritensis

text: Legionella spiritensis


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Legionella steigerwaltii

text: Tap water

text: Legionella steigerwaltii

characteristic: organism

text: Legionella steigerwaltii

text: not available: to be reported later

text: environmental

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Legionella israelensis

text: Israel

text: Water

text: Legionella israelensis

text: Legionella israelensis

text: not available: to be reported later

text: environmental


text: SC

text: public

characteristic: collection date

text: Legionella feeleii

characteristic: culture collection

text: Grinding Machine Coolant Fluid

characteristic: isolation source

text: Legionella feeleii

text: Legionella feeleii

text: not available: to be reported later

characteristic: serovar

text: environmental

characteristic: specific host


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: Buttiauxella agrestis

characteristic: common name

text: Drinking Water

text: Buttiauxella agrestis

text: Buttiauxella agrestis

text: not available: to be reported later

text: environmental

characteristic: strain


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Sphingobacterium mizutaii

text: Ventricular fluid

text: Sphingobacterium mizutaii

characteristic: organism

text: Sphingobacterium mizutaii


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Roseomonas gilardii subsp. rosea

text: USA: Houston, TX

characteristic: country

text: disease

characteristic: host status

text: Blood

text: Roseomonas gilardii subsp. rosea

text: Roseomonas gilardii subsp. rosea

text: not available: to be reported later

text: Human

characteristic: title


text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Legionella beliardensis

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

characteristic: isolation source

text: Legionella beliardensis

text: Legionella beliardensis

text: not available: to be reported later

characteristic: serovar

text: not available: to be reported later


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

text: public

text: Suttonella ornithocola

characteristic: common name

text: not available: to be reported later

text: Lungs

text: Suttonella ornithocola

text: Suttonella ornithocola

text: not available: to be reported later

text: Bird (Coal Tit)

characteristic: specific host

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Chryseobacterium taklimakanense

text: China

text: Soil

text: Chryseobacterium taklimakanense

characteristic: organism

text: Chryseobacterium taklimakanense


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Eikenella corrodens

text: Norway

characteristic: country

text: Sputum

text: Eikenella corrodens

text: Eikenella corrodens

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: collection date

text: Mobiluncus curtisii subsp. holmesii

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: Vaginal discharge

characteristic: isolation source

text: Mobiluncus curtisii subsp. holmesii

text: Mobiluncus curtisii subsp. holmesii

text: not available: to be reported later

characteristic: serovar

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Legionella taurinensis

characteristic: common name

text: not available: to be reported later

text: not available: to be reported later

text: Legionella taurinensis

text: Legionella taurinensis

text: not available: to be reported later

text: not available: to be reported later

characteristic: specific host

characteristic: strain


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Legionella busanensis

text: not available: to be reported later

text: not available: to be reported later

text: Legionella busanensis

characteristic: organism

text: Legionella busanensis

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Clostridium perfringens

text: United Kingdom: London

characteristic: country

text: Stewed Steak

text: Clostridium perfringens

text: Clostridium perfringens

text: not available: to be reported later

text: environmental

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Rhodococcus coprophilus

text: United Kingdom: Yorkshire

characteristic: culture collection

text: Pond mud

characteristic: isolation source

text: Rhodococcus coprophilus

text: Rhodococcus coprophilus


characteristic: External Id

text: SC

text: public

text: Cardiobacterium hominis

characteristic: common name

text: disease

characteristic: host status

text: Blood culture

text: Cardiobacterium hominis

text: Cardiobacterium hominis

text: not available: to be reported later

characteristic: serovar

text: not available: to be reported later

characteristic: specific host

characteristic: strain


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: [Haemophilus] ducreyi

text: United Kingdom: Sheffield

text: not available: to be reported later

text: not available: to be reported later

text: [Haemophilus] ducreyi

characteristic: organism

text: [Haemophilus] ducreyi

text: not available: to be reported later

text: Human


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Bifidobacterium longum

text: not available: to be reported later

text: Intestine

text: Bifidobacterium longum

text: Bifidobacterium longum

text: not available: to be reported later

text: Human (adult)

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Prevotella intermedia

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

characteristic: isolation source

text: Prevotella intermedia

text: Prevotella intermedia

text: not available: to be reported later

text: not available: to be reported later


text: SC

text: public

text: Roseomonas mucosa

characteristic: common name

text: USA: Houston, TX

characteristic: country

text: disease

characteristic: host status

text: Blood

text: Roseomonas mucosa

text: Roseomonas mucosa

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Salmonella enterica subsp. enterica serovar Gallinarum

text: not available: to be reported later

text: not available: to be reported later

characteristic: organism

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus merionis

text: Germany

text: Oropharnynges

text: Streptococcus merionis

text: Streptococcus merionis

text: Mongolian Jird

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Escherichia coli

characteristic: common name

text: United Kingdom: Southend

characteristic: country

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: not available: to be reported later

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Mycoplasma salivarium

text: not available: to be reported later

characteristic: host status

text: Saliva

text: Mycoplasma salivarium

text: Mycoplasma salivarium

text: not available: to be reported later

characteristic: serovar

text: not available: to be reported later

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mycoplasma fermentans

text: not available: to be reported later

text: not available: to be reported later

text: Mycoplasma fermentans

characteristic: organism

text: Mycoplasma fermentans

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Mycoplasma bovirhinis

text: not available: to be reported later

text: Respiratory Tract

text: Mycoplasma bovirhinis

text: Mycoplasma bovirhinis

text: not available: to be reported later

text: Bovine

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Mycoplasma cynos

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: Lung

characteristic: isolation source

text: Mycoplasma cynos

text: Mycoplasma cynos

text: not available: to be reported later

text: Dog


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Mycoplasma conjunctivae

text: USA: Baltimore, MD

characteristic: country

text: not available: to be reported later

characteristic: host status

text: Eye

text: Mycoplasma conjunctivae

text: Mycoplasma conjunctivae

text: not available: to be reported later

characteristic: serovar

text: Ovine (Sheep)

characteristic: specific host

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mycoplasma putrefaciens

text: Septicemic and arthritic disease

text: not available: to be reported later

text: Mycoplasma putrefaciens

characteristic: organism

text: Mycoplasma putrefaciens

text: not available: to be reported later

text: Goat


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Mycoplasma neurolyticum

text: disease

text: Brain

text: Mycoplasma neurolyticum

text: Mycoplasma neurolyticum

text: not available: to be reported later

text: Mouse

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: Mycoplasma gallinaceum

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: Trachea

characteristic: isolation source

text: Mycoplasma gallinaceum

text: Mycoplasma gallinaceum

text: not available: to be reported later

text: Bird (Chicken)


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Mycoplasma iowae

text: not available: to be reported later

characteristic: host status

text: Air sac of a pipped embryo

text: Mycoplasma iowae

text: Mycoplasma iowae

text: not available: to be reported later

characteristic: serovar

text: Embryo

characteristic: specific host

characteristic: strain


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Listeria monocytogenes

text: not available: to be reported later

text: not available: to be reported later

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: not available: to be reported later

text: not available: to be reported later


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Raoultella planticola

text: United Kingdom

characteristic: country

text: not available: to be reported later

text: Raoultella planticola

text: Raoultella planticola

text: not available: to be reported later

text: environmental


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

text: Parabacteroides distasonis

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

characteristic: isolation source

text: Parabacteroides distasonis

text: Parabacteroides distasonis

text: not available: to be reported later

text: not available: to be reported later

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Veillonella criceti

text: not available: to be reported later

characteristic: host status

text: Mouth

text: Veillonella criceti

text: Veillonella criceti

text: not available: to be reported later

characteristic: serovar

text: Hamster

characteristic: specific host

characteristic: strain


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Escherichia coli

text: Austria: Innsbruck

text: not available: to be reported later

text: not available: to be reported later

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Cardiobacterium valvarum

text: disease

text: Blood culture

text: Cardiobacterium valvarum

text: Cardiobacterium valvarum

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Pannonibacter phragmitetus

characteristic: common name

characteristic: culture collection

text: Uprooted Reed Ribosomes

characteristic: isolation source

text: Pannonibacter phragmitetus

text: Pannonibacter phragmitetus

text: not available: to be reported later

text: environmental

characteristic: title


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 7 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: strain


text: whole genome

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous male E9.5 13 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 26 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as wildtype. However, lacZ expression detected in the sequence suggests heterozygous therefore the genotype has been altered accordingly.

text: Mus musculus


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 26 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: whole genome

text: female

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 26 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 26 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as wildtype. However, lacZ expression detected in the sequence suggests heterozygous therefore the genotype has been altered accordingly.

characteristic: sample description

text: Mus musculus

characteristic: strain


text: whole genome

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 20 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype sibling female E9.5 21 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 20 somite mouse embryo for allele Wrap53tm1b(EUCOMM)Wtsi, with heterozygous Wrap53 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 21 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 22 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 22 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 23 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: whole genome

text: female

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 23 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous female E9.5 26 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling male E9.5 26 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 24 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling male E9.5 22 somite mouse embryo for allele Elac2tm1b(EUCOMM)Wtsi, with heterozygous Elac2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: whole genome

text: female

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 25 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 26 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 23 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype sibling male E9.5 23 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 25 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Using the yolk sac the embryo gender was inconclusive, however, analysis of Xist and Y chromosome genes in the sequence data suggests male and the gender has been altered accordingly.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 23 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Using the yolk sac the embryo gender was inconclusive, however, analysis of Xist and Y chromosome genes in the sequence data suggests female and the gender has been altered accordingly.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 22 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: whole genome

text: male

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Dhodhtm1b(EUCOMM)Wtsi, with heterozygous Dhodh / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling male E9.5 24 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 24 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous male E9.5 24 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 24 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 27 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole genome

text: male

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling male E9.5 25 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: title


text: whole genome

text: female

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype sibling female E9.5 25 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus


text: whole genome

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 23 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


text: whole genome

text: male

text: Mus musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Dpm1tm1b(KOMP)Wtsi, with heterozygous Dpm1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: Burkholderia gladioli

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Burkholderia gladioli

text: Burkholderia gladioli

characteristic: organism

text: Burkholderia gladioli


text: Burkholderia vietnamiensis

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Burkholderia vietnamiensis

text: Burkholderia vietnamiensis

text: Burkholderia vietnamiensis


text: Burkholderia ambifaria

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Burkholderia ambifaria

characteristic: common name

text: Burkholderia ambifaria

text: Burkholderia ambifaria


text: Burkholderia anthina

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: Burkholderia anthina

text: Burkholderia anthina

text: Burkholderia anthina

characteristic: title


text: Burkholderia cenocepacia

text: SC

text: public

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia

text: Burkholderia cenocepacia


text: Burkholderia cepacia

text: SC

text: public

text: Burkholderia cepacia

text: Burkholderia cepacia

text: Burkholderia cepacia


text: Burkholderia phenazinium

text: SC

text: public

text: Burkholderia phenazinium

text: Paraburkholderia phenazinium

text: Paraburkholderia phenazinium


text: Burkholderia bryophila

text: SC

text: public

text: Burkholderia bryophila

text: Paraburkholderia bryophila

text: Paraburkholderia bryophila


text: Burkholderia megapolitana

text: SC

text: public

text: Burkholderia megapolitana

text: Paraburkholderia megapolitana

text: Paraburkholderia megapolitana


text: Burkholderia tropica

text: SC

text: public

text: Burkholderia tropica

text: Paraburkholderia tropica

text: Paraburkholderia tropica


text: PORTO CONTE RICERCHE SRL

text: public

tag: Namespace:PORTO CONTE RICERCHE SRL

text: mouse gut metagenome

text: Caecal content

characteristic: description

text: mouse gut metagenome

text: mouse gut metagenome

text: mouse intestinal microbiota


text: PORTO CONTE RICERCHE SRL

text: public

text: mouse gut metagenome

text: caecal content

text: mouse gut metagenome

text: mouse gut metagenome

text: mouse intestinal microbiota


text: PORTO CONTE RICERCHE SRL

text: public

text: mouse gut metagenome

text: faeces

text: mouse gut metagenome

text: mouse gut metagenome

text: mouse intestinal microbiota


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Mycolicibacter nonchromogenicus

characteristic: culture collection

text: Soil

characteristic: isolation source

text: Mycolicibacter nonchromogenicus

text: Mycolicibacter nonchromogenicus

text: not available: to be reported later

characteristic: serovar

text: environmental

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: Mycolicibacter terrae

text: Mycolicibacter terrae

characteristic: organism

text: Mycolicibacter terrae


text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Mycobacterium gadium

characteristic: common name

text: not available: to be reported later

characteristic: host status

text: Sputum

text: Mycobacterium gadium

text: Mycobacterium gadium

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: anonymized name

characteristic: collection date

text: Kurthia zopfii

text: not available: to be reported later

text: not available: to be reported later

text: Kurthia zopfii

text: Kurthia zopfii

text: not available: to be reported later

text: not available: to be reported later

characteristic: title


text: SC

text: public

text: Mobiluncus mulieris

characteristic: culture collection

text: not available: to be reported later

text: Vaginal discharge

characteristic: isolation source

text: Mobiluncus mulieris

text: Mobiluncus mulieris

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: Mycoplasma bovigenitalium

text: not available: to be reported later

text: Genital tract

text: Mycoplasma bovigenitalium

characteristic: organism

text: Mycoplasma bovigenitalium

text: not available: to be reported later

text: bovine


text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Mycoplasma dispar

characteristic: common name

text: not available: to be reported later

text: lung

text: Mycoplasma dispar

text: Mycoplasma dispar

text: not available: to be reported later

text: Calf


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: anonymized name

characteristic: collection date

text: Mycoplasma hyopneumoniae

text: Switzerland

characteristic: country

text: not available: to be reported later

characteristic: host status

text: Lung

text: Mycoplasma hyopneumoniae

text: Mycoplasma hyopneumoniae

text: not available: to be reported later

text: Pig


text: SC

text: public

text: Mycoplasma edwardii

characteristic: culture collection

text: not available: to be reported later

text: throat

characteristic: isolation source

text: Mycoplasma edwardii

text: Mycoplasma edwardii

text: not available: to be reported later

characteristic: serovar

text: Dog

characteristic: specific host

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Mycoplasma alkalescens

text: not available: to be reported later

text: nasal cavity

text: Mycoplasma alkalescens

characteristic: organism

text: Mycoplasma alkalescens

text: not available: to be reported later

text: bovine


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Mycoplasma pulmonis

characteristic: common name

text: not available: to be reported later

text: lung

text: Mycoplasma pulmonis

text: Mycoplasma pulmonis

text: not available: to be reported later

text: rat


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Mycoplasma canis

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: throat

characteristic: isolation source

text: Mycoplasma canis

text: Mycoplasma canis

text: not available: to be reported later

text: canine


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Mycoplasma ovipneumoniae

text: not available: to be reported later

text: Respiratory Tract

text: Mycoplasma ovipneumoniae

text: Mycoplasma ovipneumoniae

text: not available: to be reported later

characteristic: serovar

text: Ovine

characteristic: specific host

characteristic: strain

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Mycoplasma glycophilum

text: not available: to be reported later

text: Oviduct

text: Mycoplasma glycophilum

characteristic: organism

text: Mycoplasma glycophilum

text: not available: to be reported later

text: Chicken


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Shewanella baltica

text: Oil Brine

text: Shewanella baltica

text: Shewanella baltica

text: not available: to be reported later

text: environmental


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Vibrio metschnikovii

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

text: Vibrio metschnikovii

text: Vibrio metschnikovii

text: not available: to be reported later

text: Birds (Fowl)


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Yersinia pseudotuberculosis

text: not available: to be reported later

text: not available: to be reported later

characteristic: isolation source

text: Yersinia pseudotuberculosis

text: Yersinia pseudotuberculosis

text: not available: to be reported later

characteristic: serovar

text: Bird (Turkey)

characteristic: specific host

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Moraxella caviae

text: not available: to be reported later

text: Pharynx

text: Moraxella caviae

text: Moraxella caviae

text: not available: to be reported later

text: Guinea pig

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Comamonas testosteroni

text: Soil

text: Comamonas testosteroni

characteristic: organism

text: Comamonas testosteroni

text: not available: to be reported later

text: environmental


text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Tissierella praeacuta

characteristic: common name

text: USA: Virginia (State)

characteristic: country

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

text: Tissierella praeacuta

text: Tissierella praeacuta

text: not available: to be reported later

text: Human


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Veillonella dispar

text: not available: to be reported later

characteristic: host status

text: Mouth

characteristic: isolation source

text: Veillonella dispar

text: Veillonella dispar

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Streptococcus pyogenes

text: not available: to be reported later

text: not available: to be reported later

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: not available: to be reported later

text: not available: to be reported later

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: anonymized name

text: Enterococcus faecalis

text: USA: St. Louis, MO

text: not available: to be reported later

text: Peritoneal fluid

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: not available: to be reported later

text: not available: to be reported later


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: IZSLER

text: public

characteristic: collection date

text: Whole-genome sequencing and Phylogeographic analysis of Salmonella enterica serovar Napoli strains isolated from human cases occurred in Lombardy and Emilia-Romagna, Northern Italy (2012-2014)

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: clinical sample

characteristic: isolation source

text: 45.46420 9.18998

characteristic: lat lon

text: Salmonella enterica subsp. enterica serovar Napoli

text: Whole-genome sequencing of Salmonella enterica serovar Napoli in Lombardy and Emilia-Romagna, Italy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IZSLER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Italy

text: diseased

text: homo sapiens

text: clinical sample

text: 45.80806 9.08518

characteristic: title


characteristic: ENA-CHECKLIST

text: IZSLER

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Italy

text: diseased

text: homo sapiens

text: clinical sample

text: 44.13964 12.24643

characteristic: organism


text: IZSLER

text: public

characteristic: collection date

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

text: clinical sample

text: 45.05262 9.69298


text: IZSLER

text: public

text: Italy

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: clinical sample

characteristic: isolation source

text: 45.82060 8.82506

characteristic: lat lon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IZSLER

characteristic: INSDC center name

text: public

text: Italy

text: diseased

text: homo sapiens

text: clinical sample

text: 44.69899 10.62969


text: IZSLER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Italy

text: diseased

text: homo sapiens

text: clinical sample

text: 45.85657 9.39767

characteristic: title


characteristic: ENA-CHECKLIST

text: IZSLER

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Italy

text: diseased

text: homo sapiens

text: clinical sample

text: 44.49489 11.34262

characteristic: organism


text: IZSLER

text: public

characteristic: collection date

characteristic: description

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

text: clinical sample

text: 44.83812 11.61979


text: IZSLER

text: public

text: Italy

text: diseased

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: clinical sample

characteristic: isolation source

text: 45.30972 9.50372

characteristic: lat lon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IZSLER

characteristic: INSDC center name

text: public

text: Italy

text: diseased

text: homo sapiens

text: clinical sample

text: 45.58450 9.27445


text: IZSLER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Italy

text: diseased

text: homo sapiens

text: clinical salmple

text: 45.46420 9.18998

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF COLOGNE

characteristic: Submitter Id

text: not provided

text: not provided

characteristic: country

text: Acinetobacter pittii

characteristic: organism

text: Acinetobacter pittii


E-MTAB-6589:Zygote Control 1

text: University of Cambridge

text: public

text: E-MTAB-6589:Zygote Control 1

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: C57BL/6J primiparous females and males were mated at 2.5-3 months of age. Randomly selected dams and litters were subjected to daily 3h proximal unpredictable separation combined with unpredictable maternal stress (MSUS) from postnatal day 1 to 14 as described previously (Franklin et al 2010 Biol. Psychiatry) or left undisturbed (Controls). Cage changes took place once a week until weaning (postnatal day 21) for both MSUS and control animals. At weaning, pups were assigned to social groups (4-5 mice per cage) of the same treatment and sex, but from different dams to prevent litter effects. Mice chosen for sperm sampling did not undergo any behavioral or metabolic tests and were 2-3 months old at the time of sampling. For sperm RNA sequencing, mature sperm cells were collected from cauda epididymis and purified by counterflow centrifugal elutriation using a Beckman JE-5.0 elutriation rotor in a Sanderson chamber and a Beckman Avanti J-26 XPI elutriation centrifuge. Purity of samples was confirmed by inspecting eluted sperm cells under a light microscope. 500 ng sperm RNA pooled from 4 control or 4 MSUS males each were subjected to Agencourt AMPure XP (Beckman Coulter) following the manufacturer’s instructions. Total RNA contained in 50 ul water were mixed with 125ul AMPure XP bead solution. Mixture was incubated for 5 minutes at room temperature then placed on a magnetic stand to allow magnetic beads to bind long RNA. When the solution appeared clear, the supernatant containing small RNA was aspirated and saved for later processing. Beads with bound long RNA were washed twice with 200ul of 70% EtOH. Long RNA were eluted by addition of 100ul elution buffer. Samples were placed again on the magnetic stand to capture magnetic beads while aspirating the supernatant containing long RNA and transferring it to a new tube for subsequent processing. Small and long RNA fractions were subjected to EtOH precipitation for purification. Efficiency of size separation was determined using Agilent 2100 Bioanalyzer. 130 ul of long RNA in Tris-HCL, pH 8.0 buffer was transferred into Crimp cap Micro tubes and subsequently fragmented using a Covaris Ultrasonicator E210 containing an AFA intensifier and applying the following settings: time: 450sec, 175 Watt, 200 cycles/burst, intensity 5, duty cycle 10%, temperature 4-8°C, Power mode: frequency sweeping, degassing mode: continuous, water lever: 6. Successful fragmentation was determined using Agilent 2100 Bioanalyzer. Zygotes were collected from C57Bl6 females (Janvier, France) after superovulation (intraperitoneal injection of 5 IU pregnant mare serum gonadotropin followed by 5 IU human chorionic gonadotrophin 48h later), and mating with B6D2F1 males. 1-2 pl of 0.5 ng/μl solution of small or long RNA isolated and pooled from sperm from of 4 adult MSUS or control males dissolved in 0.5 mM Tris-HCl, pH 8.0, 5 μM EDTA were microinjected into the male pronucleus of fertilized eggs using a standard microscope and DNA microinjection method. Sperm fragmented long RNA injection followed the same protocol and used the same samples after fragmentation. This protocol aims at mimicking the amount of sperm RNA estimated to be delivered to the oocyte. Experimenter was blind to treatment. Injections were balanced across groups and all performed between 2 and 4 pm. For molecular analysis at the 4-cell stage surviving embryos were placed in KSOM medium supplemented with essential amino acids (Millipore) and cultured for 48h in 5% CO2 at 37C°.Samples were collected the day of plug detection by scratching the uterine horn. RNA was extracted using standard Trizol LS protocol. Library was prepared following the manufacturers recommendations (Truseq total RNA) without ribosomal depletion and diluting adapters 1:5 in Tris. ERCC spike ins were added at a concentration of 1:10000.

characteristic: description

text: zygote

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain

text: Zygote Control 1


E-MTAB-6589:Zygote Control 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cambridge

characteristic: INSDC center name

text: public

text: E-MTAB-6589:Zygote Control 2

text: ArrayExpress

text: house mouse

text: zygote

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zygote Control 2


E-MTAB-6589:Zygote Control 3

text: University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-6589:Zygote Control 3

text: ArrayExpress

text: house mouse

text: zygote

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zygote Control 3

characteristic: title


E-MTAB-6589:Zygote Control 4

characteristic: ENA-CHECKLIST

text: University of Cambridge

text: public

characteristic: INSDC status

text: E-MTAB-6589:Zygote Control 4

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: zygote

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zygote Control 4


E-MTAB-6589:Zygote MSUS 1

text: University of Cambridge

text: public

text: E-MTAB-6589:Zygote MSUS 1

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: zygote

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: Zygote MSUS 1


E-MTAB-6589:Zygote MSUS 2

text: University of Cambridge

text: public

text: E-MTAB-6589:Zygote MSUS 2

text: ArrayExpress

text: house mouse

characteristic: description

text: zygote

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zygote MSUS 2


E-MTAB-6589:Zygote MSUS 3

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

text: public

text: E-MTAB-6589:Zygote MSUS 3

text: ArrayExpress

text: house mouse

text: zygote

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain

text: Zygote MSUS 3


E-MTAB-6589:Zygote MSUS 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cambridge

characteristic: INSDC center name

text: public

text: E-MTAB-6589:Zygote MSUS 4

text: ArrayExpress

text: house mouse

text: zygote

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zygote MSUS 4


name: E-MTAB-6587:Embryo Control RNA fragments-inj 1

text: University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: Protocols: C57BL/6J primiparous females and males were mated at 2.5-3 months of age. Randomly selected dams and litters were subjected to daily 3h proximal unpredictable separation combined with unpredictable maternal stress (MSUS) from postnatal day 1 to 14 as described previously (Franklin et al 2010 Biol. Psychiatry) or left undisturbed (Controls). Cage changes took place once a week until weaning (postnatal day 21) for both MSUS and control animals. At weaning, pups were assigned to social groups (4-5 mice per cage) of the same treatment and sex, but from different dams to prevent litter effects. Mice chosen for sperm sampling did not undergo any behavioral or metabolic tests and were 2-3 months old at the time of sampling. For sperm RNA sequencing, mature sperm cells were collected from cauda epididymis and purified by counterflow centrifugal elutriation using a Beckman JE-5.0 elutriation rotor in a Sanderson chamber and a Beckman Avanti J-26 XPI elutriation centrifuge. Purity of samples was confirmed by inspecting eluted sperm cells under a light microscope. 500 ng sperm RNA pooled from 4 control or 4 MSUS males each were subjected to Agencourt AMPure XP (Beckman Coulter) following the manufacturer’s instructions. Total RNA contained in 50 ul water were mixed with 125ul AMPure XP bead solution. Mixture was incubated for 5 minutes at room temperature then placed on a magnetic stand to allow magnetic beads to bind long RNA. When the solution appeared clear, the supernatant containing small RNA was aspirated and saved for later processing. Beads with bound long RNA were washed twice with 200ul of 70% EtOH. Long RNA were eluted by addition of 100ul elution buffer. Samples were placed again on the magnetic stand to capture magnetic beads while aspirating the supernatant containing long RNA and transferring it to a new tube for subsequent processing. Small and long RNA fractions were subjected to EtOH precipitation for purification. Efficiency of size separation was determined using Agilent 2100 Bioanalyzer. 130 ul of long RNA in Tris-HCL, pH 8.0 buffer was transferred into Crimp cap Micro tubes and subsequently fragmented using a Covaris Ultrasonicator E210 containing an AFA intensifier and applying the following settings: time: 450sec, 175 Watt, 200 cycles/burst, intensity 5, duty cycle 10%, temperature 4-8°C, Power mode: frequency sweeping, degassing mode: continuous, water lever: 6. Successful fragmentation was determined using Agilent 2100 Bioanalyzer. Zygotes were collected from C57Bl6 females (Janvier, France) after superovulation (intraperitoneal injection of 5 IU pregnant mare serum gonadotropin followed by 5 IU human chorionic gonadotrophin 48h later), and mating with B6D2F1 males. 1-2 pl of 0.5 ng/μl solution of small or long RNA isolated and pooled from sperm from of 4 adult MSUS or control males dissolved in 0.5 mM Tris-HCl, pH 8.0, 5 μM EDTA were microinjected into the male pronucleus of fertilized eggs using a standard microscope and DNA microinjection method. Sperm fragmented long RNA injection followed the same protocol and used the same samples after fragmentation. This protocol aims at mimicking the amount of sperm RNA estimated to be delivered to the oocyte. Experimenter was blind to treatment. Injections were balanced across groups and all performed between 2 and 4 pm. For molecular analysis at the 4-cell stage surviving embryos were placed in KSOM medium supplemented with essential amino acids (Millipore) and cultured for 48h in 5% CO2 at 37C°. Embryos were collected by a mouth pipet and dispensed directly into Trizol. RNA was extracted using the standard Trizol extraction protocol. Library was prepared following the manufacturers recommendations (Truseq total RNA) without ribosomal depletion and diluting adapters 1:6 in Tris.

text: 4-cell embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo Control RNA fragments-inj 1


name: E-MTAB-6587:Embryo Control RNA fragments-inj 2

characteristic: ENA-CHECKLIST

text: University of Cambridge

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: 4-cell embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo Control RNA fragments-inj 2

characteristic: title


name: E-MTAB-6587:Embryo Control RNA fragments-inj 3

text: University of Cambridge

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: 4-cell embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo Control RNA fragments-inj 3


name: E-MTAB-6587:Embryo Control RNA fragments-inj 4

text: University of Cambridge

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: 4-cell embryo

characteristic: developmental stage

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo Control RNA fragments-inj 4


name: E-MTAB-6587:Embryo MSUS RNA fragments-inj 1

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

text: public

text: ArrayExpress

text: house mouse

text: 4-cell embryo

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo MSUS RNA fragments-inj 1


name: E-MTAB-6587:Embryo MSUS RNA fragments-inj 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Cambridge

text: public

text: ArrayExpress

text: house mouse

text: 4-cell embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

characteristic: strain

text: Embryo MSUS RNA fragments-inj 2


name: E-MTAB-6587:Embryo MSUS RNA fragments-inj 3

text: University of Cambridge

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: 4-cell embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo MSUS RNA fragments-inj 3


name: E-MTAB-6587:Embryo MSUS RNA fragments-inj 4

characteristic: ENA-CHECKLIST

text: University of Cambridge

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: 4-cell embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: C57BL/6 x B6D2F1

text: Embryo MSUS RNA fragments-inj 4


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Acinetobacter baumannii

text: Acinetobacter baumannii

characteristic: title


text: public

tag: Namespace:WASHINGTON UNIVERSITY  SCHOOL OF MEDICINE

text: house mouse

characteristic: common name

characteristic: description

text: B6 no abx

characteristic: mouse+treatment

text: Mus musculus

characteristic: organism

text: Mus musculus

text: distal ileum

characteristic: tissue type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WASHINGTON UNIVERSITY SCHOOL OF MEDICINE

text: public

text: house mouse

text: B6 no abx

text: Mus musculus

text: Mus musculus

text: distal ileum


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: B6 + abx

text: Mus musculus

text: Mus musculus

text: distal ileum


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: house mouse

text: B6 no abx

text: Mus musculus

text: Mus musculus

text: proximal colon


text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: B6 + abx

text: Mus musculus

text: Mus musculus

text: proximal colon


text: TRINITY COLLEGE DUBLIN

text: public

tag: Namespace:TRINITY COLLEGE DUBLIN

characteristic: Submitter Id

text: goat

text: Goat from Acem Hoyok, a Bronze Age Central Anatolian Site.

text: Turkey

characteristic: geographic location (country and/or sea)

text: Central Turkey

characteristic: geographic location (region and locality)

text: Capra hircus

text: Capra hircus

text: Petrous Bone


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Listeria monocytogenes

characteristic: common name

characteristic: culture collection

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Rabbit

characteristic: specific host

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Escherichia coli

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

characteristic: isolation source

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: not available: to be reported later

characteristic: serovar

text: not available: to be reported later


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Escherichia coli

text: not available: to be reported later

text: not available: to be reported later

text: Escherichia coli

text: Escherichia coli

text: O124 : k72(b17) : h-

text: not available: to be reported later


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: [Clostridium] sphenoides

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

text: [Clostridium] sphenoides

text: [Clostridium] sphenoides

text: not available: to be reported later

text: not available: to be reported later

characteristic: specific host


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Mycobacterium peregrinum

text: not available: to be reported later

text: Bronchial aspirate

text: Mycobacterium peregrinum

text: Mycobacterium peregrinum

text: not available: to be reported later

text: Human (Child)

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

text: Mycobacterium vaccae

text: not available: to be reported later

characteristic: host status

text: Bovine milk

characteristic: isolation source

text: Mycobacterium vaccae

characteristic: organism

text: Mycobacterium vaccae

text: not available: to be reported later

characteristic: serovar

text: not available: to be reported later


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rothia dentocariosa

text: disease

text: Carious teeth

text: Rothia dentocariosa

text: Rothia dentocariosa

text: not available: to be reported later

text: not available: to be reported later


text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Blautia coccoides

characteristic: common name

text: Japan

characteristic: country

characteristic: culture collection

text: not available: to be reported later

text: Faeces

text: Blautia coccoides

text: Blautia coccoides

text: not available: to be reported later

text: Mouse


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Actinomyces denticolens

text: United Kingdom: London

text: not available: to be reported later

text: Dental plaque

text: Actinomyces denticolens

text: Actinomyces denticolens

text: not available: to be reported later

text: Cow

characteristic: specific host

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

text: public

text: Actinomyces howellii

text: not available: to be reported later

characteristic: host status

text: Dental plaque

characteristic: isolation source

text: Actinomyces howellii

characteristic: organism

text: Actinomyces howellii

text: not available: to be reported later

characteristic: serovar

text: Dairy cow


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Staphylococcus saccharolyticus

text: not available: to be reported later

text: not available: to be reported later

text: Staphylococcus saccharolyticus

text: Staphylococcus saccharolyticus

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: collection date

text: Slackia heliotrinireducens

characteristic: common name

text: Australia

characteristic: country

characteristic: culture collection

text: not available: to be reported later

text: Rumen

text: Slackia heliotrinireducens

text: Slackia heliotrinireducens

text: not available: to be reported later

text: Sheep


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Nocardia asteroides

text: not available: to be reported later

text: not available: to be reported later

text: Nocardia asteroides

text: Nocardia asteroides

text: not available: to be reported later

text: not available: to be reported later

characteristic: specific host

characteristic: strain

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Anaerococcus prevotii

text: disease

characteristic: host status

text: Human Plasma

characteristic: isolation source

text: Anaerococcus prevotii

characteristic: organism

text: Anaerococcus prevotii

text: not available: to be reported later

characteristic: serovar

text: human


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Bifidobacterium longum subsp. infantis

text: not available: to be reported later

text: Intestine

text: Bifidobacterium longum subsp. infantis

text: Bifidobacterium longum subsp. infantis

text: not available: to be reported later

text: Human (Infant)


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

characteristic: collection date

text: Mobiluncus mulieris

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: Vagina

text: Mobiluncus mulieris

text: Mobiluncus mulieris

text: not available: to be reported later

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lactobacillus brevis

text: not available: to be reported later

text: not available: to be reported later

text: Lactobacillus brevis

text: Lactobacillus brevis

text: not available: to be reported later

text: not available: to be reported later

characteristic: specific host

characteristic: strain

characteristic: title


text: SC

characteristic: INSDC last update

text: public

text: Psychrobacter phenylpyruvicus

text: USA: Atlanta

characteristic: country

text: disease

characteristic: host status

text: Blood

characteristic: isolation source

text: Psychrobacter phenylpyruvicus

characteristic: organism

text: Psychrobacter phenylpyruvicus

text: not available: to be reported later

characteristic: serovar

text: Human


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Legionella pneumophila subsp. pascullei

text: Water from Shower Head

text: Legionella pneumophila subsp. pascullei

text: Legionella pneumophila subsp. pascullei

text: not available: to be reported later

text: environmental


characteristic: ENA-CHECKLIST

characteristic: External Id

text: TRINITY COLLEGE DUBLIN

characteristic: INSDC center name

text: public

text: wild goat

characteristic: common name

text: Wild goat from Direkli Cave, Turkey (Epipaleolithic).

characteristic: description

text: Capra aegagrus

text: Capra aegagrus


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Legionella birminghamensis

text: USA: Alabama (State)

characteristic: culture collection

text: not available: to be reported later

text: Lung Biopsy

text: Legionella birminghamensis

text: Legionella birminghamensis

text: not available: to be reported later

text: not available: to be reported later

characteristic: specific host

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: TRINITY COLLEGE DUBLIN

text: public

text: wild goat

text: Epipaleolithic Bezoar from Direkli Cave, Turkey.

text: Capra aegagrus

characteristic: organism

text: Capra aegagrus


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bartonella grahamii

text: United Kingdom

characteristic: country

text: disease

characteristic: host status

text: Blood

characteristic: isolation source

text: Bartonella grahamii

text: Bartonella grahamii

text: not available: to be reported later

characteristic: serovar

text: Bank Vole


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: anonymized name

text: Phocoenobacter uteri

characteristic: common name

text: not available: to be reported later

text: Uterus

text: Phocoenobacter uteri

text: Phocoenobacter uteri

text: not available: to be reported later

text: Harbour Porpoise