E-MTAB-6998:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6998:Sample 18

text: ArrayExpress

text: human

text: normal

text: wild type genotype

text: poly(ethylene glycol) hydrogel

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: serum-free media control

text: Sample 18

characteristic: title


E-MTAB-6998:Sample 24

status: PUBLIC

tag: attribute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6998:Sample 24

tag: Namespace:Biotech Research & Innovation Centre (BRIC), University of Copenhagen

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: mesenchymal stem cell of the bone marrow

characteristic: cell type

text: human

characteristic: common name

text: Protocols: To retrieve cells, hydrogels were degraded in 0.5 mg/mL collagenase A (Sigma, 11088793001) at 37 °C for 60 min. Human bone marrow-derived mesenchymal stromal cells (MSCs) were isolated as described previously (https://www.ncbi.nlm.nih.gov/pubmed/25020062) from bone marrow aspirates of healthy donors (n = 4) obtained during orthopedic surgical procedures after informed consent and in accordance with the local ethical committee (University Hospital Basel; Prof. Dr. Kummer; approval date 26/03/2007 Ref Number 78/07). MSCs are primary, wild type cells. MSCs were maintained in MEM alpha (with nucleosides, Gibco) supplemented with Fetal Bovine Serum (FBS) (10%, Gibco), penicillin (100 U ml-1, Gibco), streptomycin (100 µg ml-1, Gibco), and FGF-2 (5 ng ml-1, PeproTech) at 37°C in a humidified atmosphere at 5% CO2. Mesenchymal stem cells were grown in PEG hydrogels for 7 days in the presence of 2% serum plus serum-free media or a breast cancer cell secretome. Total RNA was isolated from cells using the RNeasy Micro Kit following the manufacturer’s instructions (Qiagen, 74004). We used NEBNext Ultra RNA Library Prep Kit with PolyA selection for library preparation. A detailed protocol can be found here https://www.neb.com/-/media/catalog/Datacards%20or%20Manuals/manualE7530.pdf.

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: poly(ethylene glycol) hydrogel

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: serum-free media control

characteristic: stimulus

text: Sample 24


E-MTAB-6998:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Biotech Research & Innovation Centre (BRIC), University of Copenhagen

text: public

text: E-MTAB-6998:Sample 6

text: ArrayExpress

text: human

text: normal

text: wild type genotype

text: poly(ethylene glycol) hydrogel

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: serum-free media control

text: Sample 6

characteristic: title


text: STATENS SERUM INSTITUT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:STATENS SERUM INSTITUT

text: Luxembourg

text: Escherichia coli

text: Escherichia coli


text: STATENS SERUM INSTITUT

text: public

characteristic: Submitter Id

text: Belgium

characteristic: description

text: Escherichia coli

text: Escherichia coli


text: STATENS SERUM INSTITUT

text: public

text: Denmark

text: Escherichia coli

text: Escherichia coli


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: 9 to 16

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: dexamethasone

characteristic: compound

text: Protocols: Male and female Reverb alpha global knockout mice and their wild-type littermate controls, aged between 9-16 weeks, were housed on a 12hr:12hr light:dark cycle, with ad libitum access to food and water. Mice were injected at ZT6 or ZT18 with 1mg/kg dexamethasone (Sigma) i.p.. One hour later, mice were culled by cervical dislocation, and livers harvested and flash frozen. ChIP was performed using the ChIP-IT High Sensitivity kit (Active Motif) according to manufacturer instructions. A TissueRuptor (Qiagen) was used for 45s at maximum speed to disrupt liver tissue, followed by dounce homogenising for 70 strokes to release cell nuclei. Nuclear sonication was conducted with the EpiShear probe sonicator (Active Motif, 3.5mm probe) for 8 rounds of 2 minutes per sample, at 37% amplitude. 15ug sheared chromatin was incubated with anti-H3K27Ac antibody (Active Motif, Lot No: 31814008). Antibody was pulled down with magnetic protein G agarose microspheres (ReSyn Biosciences). After elution and de-crosslinking ChIP DNA was purified as per ChIP-IT High Sensitivity kit instructions. 5-10ng ChIP DNA was submitted to the University of Manchester Genomics Facility for library preparation and paired-end sequencing on the Illumina HiSeq 4000 platform.

unit: milligram per kilogram

characteristic: dose

text: Nr1d1 homozygous knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: 9 to 16

text: ArrayExpress

text: house mouse

text: dexamethasone

text: Nr1d1 homozygous knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9 to 16

text: ArrayExpress

text: house mouse

text: dexamethasone

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


text: UNIVERSITY OF MANCHESTER

text: public

characteristic: Submitter Id

text: 9 to 16

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: dexamethasone

characteristic: compound

characteristic: description

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBENS

text: public

text: thale cress

characteristic: ecotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: Mix Kolf, Yemz, Vass

text: plated EB

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: human

text: Homo sapiens

characteristic: organism

text: plated EB

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Pontificia Universidad Catolica de Chile

characteristic: collection date

text: human

text: Human gut

characteristic: environment (biome)

text: fecal

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: ENN

characteristic: project name

text: Homo sapiens

text: Miseq

characteristic: sequencing method

text: Placebo Consumption

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Pontificia Universidad Catolica de Chile

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Human gut

text: fecal

text: fecal

text: Chile

text: human-gut

text: metagenome

text: Homo sapiens

characteristic: organism

text: ENN

text: Homo sapiens

text: Miseq

text: Placebo Consumption


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: human

text: Human gut

characteristic: environment (biome)

text: fecal

characteristic: environment (feature)

text: fecal

characteristic: environment (material)

text: Chile

text: human-gut

text: metagenome

text: Homo sapiens

text: ENN

text: Homo sapiens

text: Miseq

text: Placebo &Sucralose Consumption


text: public

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCES

text: foxtail millet

text: 24 gb

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: 3-4 leaf seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: diploidy

characteristic: ploidy

text: Setaria italica

text: RNAseq of sistl2 mutant and corelated wildtype

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: foxtail millet

characteristic: common name

text: 24 gb

text: China

text: Setaria italica

characteristic: organism

text: 3-4 leaf seedling

text: soil

text: leaf

text: diploidy

text: Setaria italica


text: SMU

text: public

characteristic: SRA accession

text: feces metagenome

text: feces metagenome

text: feces metagenome


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: public

characteristic: collection date

text: Nigeria

characteristic: country

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

text: Nigeria

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: Homo sapiens

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: CEES

text: public

text: Spanish sparrow

text: Spanish sparrow, F, Tenerife

characteristic: description

text: Passer hispaniolensis

text: Passer hispaniolensis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CEES

text: public

text: Spanish sparrow

text: Spanish sparrow, J, Tenerife

text: Passer hispaniolensis

text: Passer hispaniolensis


text: CEES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Spanish sparrow

text: Spanish sparrow, M, Tenerife

text: Passer hispaniolensis

text: Passer hispaniolensis


text: CEES

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Spanish sparrow

text: Spanish sparrow, M, Cape_Verde

text: Passer hispaniolensis

text: Passer hispaniolensis


text: CEES

text: public

characteristic: Submitter Id

text: Italian sparrow

characteristic: common name

text: Italian sparrow, M, Crotone_Italy

text: Passer italiae

text: Passer italiae


text: CEES

text: public

characteristic: SRA accession

text: House sparrow

text: House sparrow, F, Sales_France

text: Passer domesticus

characteristic: organism

text: Passer domesticus


text: CEES

text: public

text: House sparrow

text: House sparrow, M, Sales_France

text: Passer domesticus

text: Passer domesticus


text: CEES

text: public

text: Spanish sparrow

text: Spanish sparrow, F, Lesina_Italy

text: Passer hispaniolensis

text: Passer hispaniolensis


text: CEES

text: public

text: Spanish sparrow

text: Spanish sparrow, M, Chokpak, Kazahkstan

text: Passer hispaniolensis

text: Passer hispaniolensis


text: CEES

text: public

text: Bactrianus sparrow, M, Chokpak, Kazahkstan

text: Passer domesticus bactrianus

text: Passer domesticus bactrianus


text: CEES

text: public

text: House sparrow

text: House sparrow, M, Oslo_Norway

text: Passer domesticus

text: Passer domesticus


text: CEES

text: public

text: Bactrianus sparrow, M, Golestan_Iran

text: Passer domesticus bactrianus

text: Passer domesticus bactrianus


text: CEES

text: public

text: Bactrianus sparrow, M, Kardeh_Iran

text: Passer domesticus bactrianus

text: Passer domesticus bactrianus


text: CEES

text: public

text: Italian sparrow

text: Italian sparrow, M, Rimini_Italy

text: Passer italiae

text: Passer italiae


text: CEES

text: public

text: Spanish sparrow

text: Spanish sparrow, M, Sardinia

text: Passer hispaniolensis

text: Passer hispaniolensis


text: CEES

text: public

text: Eurasian tree sparrow

text: Tree sparrow, U, Malta

text: Passer montanus

text: Passer montanus


text: CEES

text: public

text: Eurasian tree sparrow

text: Tree sparrow, U, Naxos, Italy

text: Passer montanus

text: Passer montanus


text: CEES

text: public

text: Eurasian tree sparrow

text: Tree sparrow, U, Corsica, Italy

text: Passer montanus

text: Passer montanus


text: CEES

text: public

text: Italian sparrow

text: Italian sparrow, F, Lesina_Italy

text: Passer italiae

text: Passer italiae


text: CEES

text: public

text: House sparrow

text: House sparrow, M, Aldra, Norway

text: Passer domesticus

text: Passer domesticus


text: public

tag: Namespace:Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa str. 5486


text: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae str. 980


text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae str. 920


text: wild-type

characteristic: ArrayExpress-PHENOTYPE

text: hermaphrodite

characteristic: ArrayExpress-SEX

text: Caenorhabditis elegans

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Caenorhabditis elegans

text: Hermaphrodite

characteristic: gender

text: Caenorhabditis elegans

text: wild-type

characteristic: phenotype

text: Caenorhabditis elegans

characteristic: subject id

text: Caenorhabditis elegans


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO75

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO73


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO60


text: public

characteristic: SRA accession

tag: Namespace:Department of Plant Sciences, University of Cambridge

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Suitable farms were selected by KALRO extension officers, spaced at least 10km apart, with emphasis placed on getting samples from a wide geographic area. Leaf tissue was detached using clean tweezers, submerged in RNA later (Ambion) and stored on dry ice until a -40 freezer was reached. Sampled maize plants were grown outside, and infected naturally in farmers fields Symptomatic plants were selected from farmers fields under natural infection conditions RNA was extracted using Trizol (Ambion). RNA treated using Ribo-Zero Magnetic Kit (Plant Leaf-Epicentre). Indexed stranded libraries were constructed using Scriptseq V2 RNA-Seq Library Preparation kits and Scriptseq Index PCR primers (Epicentre). Purification steps were performed using Agencourt AMPure XP beads. Library quantity and quality were checked using Qubit (Life Technologies) and on a Bioanalyzer High Sensitivity DNA Chip (Agilent Technologies).

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: Maize lethal necrosis

characteristic: disease

text: wild type genotype

characteristic: genotype

text: field study

characteristic: growth condition

text: Maize chlorotic mottle virus, sugarcane mosaic virus

characteristic: infect

text: Zea mays

text: Zea mays

text: leaf

characteristic: organism part

characteristic: sampling site

text: Zea mays


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Department of Plant Sciences, University of Cambridge

text: public

text: ArrayExpress

text: leaf production stage

text: Maize lethal necrosis

text: wild type genotype

text: field study

text: Zea mays

characteristic: organism

text: Zea mays

text: leaf

text: Zea mays

characteristic: title


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: leaf production stage

text: Maize lethal necrosis

text: wild type genotype

text: field study

text: Zea mays

text: Zea mays

text: leaf

text: N752.680, E3842.362

text: Zea mays


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: Maize lethal necrosis

text: wild type genotype

text: field study

text: Zea mays

text: Zea mays

text: leaf

text: Global plant clinic, Northern Province, Rwanda

text: Zea mays

text: FERARWANDA


text: public

text: ArrayExpress

text: FL.02 1/2 of flowers open stage

text: Maize lethal necrosis

characteristic: disease

text: wild type genotype

characteristic: genotype

text: field study

characteristic: growth condition

characteristic: infect

text: Zea mays

text: Zea mays

text: leaf

characteristic: organism part

text: S00.26013, E036.10894

text: Zea mays


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: whole plant fruit ripening stage

text: Maize lethal necrosis

text: wild type genotype

text: field study

text: Zea mays

characteristic: organism

text: Zea mays

text: leaf

characteristic: sampling site

text: Zea mays


text: gut metagenome

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: gut metagenome

characteristic: common name

text: gut metagenome

text: gut metagenome

characteristic: subject id

characteristic: title


Farmer

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Farmer

tag: Namespace:NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: Submitter Id

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Human

characteristic: host scientific name

text: MRSA

characteristic: isolate

text: Skin

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: MRSA Dairy farm


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: Sweden

text: Cattle

text: MRSA

text: Groin

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: MRSA Dairy faram 2012


characteristic: External Id

text: NATIONAL VETERINARY INSTITUTE (SVA)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sweden

text: Cattle

text: MRSA

text: Bulk milk

text: Staphylococcus aureus

text: Staphylococcus aureus

text: MRSA Dairy faram 2012


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: INSDC status

text: Sweden

text: Bulk Milk

text: MRSA

text: Milk

text: Staphylococcus aureus

text: Staphylococcus aureus

text: MRSA Dairy faram 2012

characteristic: title


text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Sweden

text: Cattle

text: MRSA

text: Milk

text: Staphylococcus aureus

text: Staphylococcus aureus

text: MRSA Dairy faram 2012


IndexM

text: NATIONAL VETERINARY INSTITUTE (SVA)

text: public

text: IndexM

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: diseased

text: Cattle

text: MRSA

text: Milk

text: Staphylococcus aureus

text: Staphylococcus aureus

text: MRSA Dairy faram 2012


text: Cornell University

text: public

tag: Namespace:Cornell University

text: soil metagenome

characteristic: common name

text: biomass removed annually

characteristic: corn biomass management

characteristic: day

characteristic: description

text: temperate

characteristic: environment (biome)

text: agriculture- continuous corn

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: moisture

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: plot

text: Synthetic eDNA degradation across soil gradients

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

text: no-till

characteristic: tillage management

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

text: biomass removed annually

characteristic: corn biomass management

characteristic: day

characteristic: description

text: temperate

text: agriculture- continuous corn

text: soil

text: USA

characteristic: geographic location (country and/or sea)

text: temperature

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: 16S rRNA gene

text: no-till

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

text: soil metagenome

text: biomass removed annually

text: temperate

characteristic: environment (biome)

text: agriculture- continuous corn

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: management

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: plot

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

text: no-till

characteristic: tillage management

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

text: biomass returned annually

characteristic: corn biomass management

characteristic: day

characteristic: description

text: temperate

text: agriculture- continuous corn

text: soil

text: USA

characteristic: geographic location (country and/or sea)

text: management

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: 16S rRNA gene

text: no-till

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

text: soil metagenome

text: biomass removed annually

text: temperate

characteristic: environment (biome)

text: agriculture- continuous corn

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: management

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: plot

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

text: conventional tillage

characteristic: tillage management

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

text: biomass returned annually

characteristic: corn biomass management

characteristic: day

characteristic: description

text: temperate

text: agriculture- continuous corn

text: soil

text: USA

characteristic: geographic location (country and/or sea)

text: management

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: 16S rRNA gene

text: conventional tillage

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

text: soil metagenome

text: temperate

characteristic: environment (biome)

text: agriculture

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: habitat

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: plot

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil metagenome

characteristic: common name

characteristic: day

characteristic: description

text: temperate

text: forest

text: soil

text: USA

characteristic: geographic location (country and/or sea)

text: habitat

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina

text: soil

text: 16S rRNA gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Cornell University

text: public

text: soil metagenome

text: temperate

characteristic: environment (biome)

text: meadow

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: habitat

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: plot

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

characteristic: timepoint


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Translational Research Center for Gastrointestinal Disorders (TARGID) Department of Chronic Diseases, Metabolism and Ageing KU Leuven Belgium

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: FACS sorting experiments for gene expression analyses were performed on a BD Aria III (BD Biosciences). Cells were immediately sorted in RLT plus lysis buffer (Qiagen) with beta-mercaptoethanol and placed on dry ice. RNA was isolated using the RNeasy Plus Micro Kit (Qiagen) according to instructions by the manufacturer. cDNA libraries were prepared SMART-Seq v4 Ultra Low Input RNA kit (Clonentech) following the manufacturer's protocol.

characteristic: description

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lamina propria of small intestine

characteristic: organism part

text: YFP negative

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Translational Research Center for Gastrointestinal Disorders (TARGID) Department of Chronic Diseases, Metabolism and Ageing KU Leuven Belgium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: lamina propria of small intestine

text: YFP negative

text: Mus musculus

text: female

text: tamoxifen


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lamina propria of small intestine

text: YFP positive

text: Mus musculus

text: female

text: tamoxifen


text: public

text: ArrayExpress

text: macrophage

text: house mouse

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: muscularis externa layer of small intestine

characteristic: organism part

text: YFP negative

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: tamoxifen

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: macrophage

text: house mouse

text: Mus musculus

text: Mus musculus

text: YFP positive

text: Mus musculus

text: female

text: tamoxifen


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: foxtail millet

characteristic: common name

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Setaria italica

text: genome sequences of yugu1 and sistl1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ABERDEEN

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF ABERDEEN

text: rice

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: QTL-seq study LD24 pooled sample

characteristic: title


VialoneNano

text: UNIVERSITY OF ABERDEEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: VialoneNano

characteristic: Submitter Id

text: rice

characteristic: common name

text: Oryza sativa

text: Oryza sativa

text: QTL-seq study Vialone Nano pooled sample


KPM

text: UNIVERSITY OF ABERDEEN

text: public

text: KPM

text: rice

text: Oryza sativa

text: Oryza sativa

text: QTL-seq study Khao Pahk Maw pooled sample


text: UNIVERSITY OF ABERDEEN

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: QTL-seq study F2 resistant pooled sample from the cross LD24 vs Vialone Nano


text: UNIVERSITY OF ABERDEEN

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: QTL-seq study F2 susceptible pooled sample from the cross LD24 vs Vialone Nano


text: UNIVERSITY OF ABERDEEN

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: QTL-seq study F2 resistant pooled sample from the cross Khao Pahk Maw vs Vialone Nano


text: UNIVERSITY OF ABERDEEN

text: public

text: rice

text: Oryza sativa

text: Oryza sativa

text: QTL-seq study F2 susceptible pooled sample from the cross Khao Pahk Maw vs Vialone Nano


text: public

tag: Namespace:INSTITUTE FOR MOLECULAR INFECTION BIOLOGY

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: Trypanosoma brucei Lister 427 strain genome assembly


text: UNIVERSITY OF EAST ANGLIA, UK

text: public

tag: Namespace:UNIVERSITY OF EAST ANGLIA, UK

characteristic: collection date

text: Australia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: PA01 ATCC15692

characteristic: isolate

text: Human

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: MinION sequencing of P. aeruginosa


PAn_nfxC mutant

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF EAST ANGLIA, UK

text: public

text: PAn_nfxC mutant

text: nfxC mutant engineered from PA_parent

characteristic: description

text: Australia

text: diseased

text: Homo sapiens

text: PA01 ATCC15692

text: Human

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: MinION sequencing of P. aeruginosa


PAdelta

characteristic: External Id

text: UNIVERSITY OF EAST ANGLIA, UK

characteristic: INSDC center name

text: public

text: PAdelta

text: Mutant selected for on ciprofloxacin media

text: Australia

text: diseased

text: Homo sapiens

text: PA01 ATCC15692

text: Human

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: MinION sequencing of P. aeruginosa

characteristic: title


PacBio WGS

text: MAINZ

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PacBio WGS

text: adult

characteristic: dev stage

text: Chironomus riparius

text: Chironomus riparius

text: female

characteristic: sex

text: Chironomus riparius WGS


text: mixed

text: mixed

text: population

text: wild-type

characteristic: ArrayExpress-PHENOTYPE

text: mixed

characteristic: ArrayExpress-SEX

text: Caenorhabditis brenneri

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: Caenorhabditis brenneri

characteristic: common name

text: Mixed

characteristic: gender

text: Caenorhabditis brenneri

text: wild-type

characteristic: phenotype

text: Caenorhabditis brenneri

characteristic: subject id

text: Caenorhabditis brenneri


E-MTAB-6976:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6976:Sample 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

text: Protocols: Self-maintaining macrophages were sorted on a BD AriaIII (BD Biosciences) in DMEM containing 30% FBS before being pelleted and resuspended in PBS with 0.04% BSA. FACS isolated cells were immediately counted by a Luna-FL Dual Fluorescence Cell Counter (Logos Biosystems). Single cell suspensions were converted to barcoded Drop-seq libraries by using the Chromium Single Cell 3â€™ Library, Gel Bead & Multiplex Kit and Chip Kit (10X Genomics; Pleasanton, California, USA). Samples were processed using kits pertaining to the V2 barcoding chemistry of 10X Genomics.

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lamina propria of large intestine

characteristic: organism part

text: YFP+ CD64+

text: Mus musculus

text: female

text: tamoxifen

characteristic: stimulus

characteristic: strain

text: Sample 1


text: Klebsiella pneumoniae

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Alfred-Wegener-Institute, Helmholtz-Centre for Polar and Marine Research

text: ArrayExpress

text: Protocols: RNA sampling - Cultures of T. hyalina and N. frigida (n≥3) were concentrated by gentle vacuum filtration over 10 and 2 µm polycarbonate filters (Millipore), respectively. The concentrated samples were transferred to 2 ml reaction tubes and centrifuged at 4000 g for 10 min at 2°C in a microcentrifuge (Hettich; Bäch, Switzerland). The supernatant was removed, the cell pellet was flash frozen in liquid nitrogen and reaction tubes were stored at −80°C. Cultivation - Cells of T. hyalina (isolated in Svalbard in 2014, Norway by Klara Wolf) and N. frigida (isolated at Barrow, Alaska in May 2011 by Andrew Juhl), were grown in Arctic seawater that was supplemented with vitamins and trace metals according to the F/2 recipe (Guillard & Ryther, 1962) as well as macronutrients (~100 µmol L-1 nitrate; ~6 µmol L-1 phosphate). Media pCO2 was adjusted by aeration and checked with a handheld pH-meter (pH926 with an Aquatrode plus; Metrohm). In these media, cells were acclimated for >10 generations to the low-light regime of 20 µmol photons m-2 s-1. After this time, cells were sampled (t0) and light intensity was increased to 380 µmol photons m-2 s-1, resembling an upwelling event or ice break-up event, respectively. Cultures were sampled over the course of the following days after 2h, 24h and 120h, the last point reflecting a putative re-acclimated state. Differential gene expression (DGE) - Total RNA was extracted from samples (n≥3) after bead lysis of cells and on-column digestion of genomic DNA (DNAse I, 7 units, 30 min at room temperature) using the RNEasy Mini Kit (Macherey Nagel). Integrity and concentration of total RNA were verified using RNA6000 Lab Chips (Agilent). 1 µg of RNA was used for cDNA library preparation (TruSeq HT paired end kit, Illumina) and the success of library preparation was verified with a LabChip GX electrophoresis (Perkin Elmer). Libraries were adjusted in concentrations and pooled, yielding a 4 pM pool. The pool was spiked with PhiX standard as benchmark control, according to manufacturer´s protocol and the mixture was submitted for sequencing in an High Output FlowCell V2 (Illumina) using a NextSeq 500 sequencer (Illumina).

text: wild type genotype

text: High pCO2

characteristic: growth condition

text: Nitzschia frigida

text: Nitzschia frigida

text: Barrow, Alaska (2011)

characteristic: sampling site

text: Nitzschia frigida


text: Alfred-Wegener-Institute, Helmholtz-Centre for Polar and Marine Research

text: public

text: ArrayExpress

characteristic: broker name

characteristic: description

text: wild type genotype

characteristic: genotype

text: High pCO2

text: Nitzschia frigida

text: Nitzschia frigida

text: Barrow, Alaska (2011)

text: Nitzschia frigida


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: wild type genotype

text: Low pCO2

text: Nitzschia frigida

text: Nitzschia frigida

text: Barrow, Alaska (2011)

text: Nitzschia frigida


text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: wild type genotype

text: High pCO2

text: Thalassiosira hyalina

text: Thalassiosira hyalina

text: Svalbard, Norway (2014)

text: Thalassiosira hyalina


text: public

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Low pCO2

text: Thalassiosira hyalina

text: Thalassiosira hyalina

text: Svalbard, Norway (2014)

text: Thalassiosira hyalina


text: public

tag: Namespace:Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology Academy of Sciences of the Czech Republic

text: ArrayExpress

text: Protocols: 25 ml cells from the indicated growth phases were quickly cooled on ice, pelleted and immediately frozen. M. smegmatis mc2 155 strains were grown at 37°C in Middlebrook 7H9 medium with 0.2% glycerol and 0.05% Tween 80 and harvested in exponential phase (OD600 ∼0.5) or after 24 hours in stationary phase (OD600 ∼2.5-3). In Ms1 deletion strain, Ms1 gene is replaced by hygromycine antibiotic resistance (LK1611). The pellet was then suspended in 240 ul TE (pH 8.0) plus 60 ul lysis buffer (50 mM Tris-HCl pH 8.0, 500 mM LiCl, 50 mM EDTA pH 8.0, 5% SDS) and 600 ul acidic phenol (pH~3):chloroform (1:1). Lysates were sonicated in a fume hood, centrifuged, the aqueous phase extracted two more times with acidic phenol (pH~3): chloroform and precipitated with ethanol. RNA was dissolved in water and DNase treated (TURBO DNA-free Kit, Ambion) two times. Five micrograms of total RNA were rRNA depleted with RiboZero Magnetic Kit, Gram positive Bacteria (Epicentre) and strand specific libraries prepared with Illumina compatible NEXTflex Rapid Directional RNA-Seq Kit (Bioo Scientific) according to manufactuer´s instructions.

text: Ms1 deletion

text: logarithmic phase culture

text: Mycolicibacterium smegmatis

characteristic: organism

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: MC2 155

characteristic: strain


characteristic: ENA-CHECKLIST

text: Laboratory of Microbial Genetics and Gene Expression, Institute of Microbiology Academy of Sciences of the Czech Republic

text: public

text: ArrayExpress

text: Ms1 deletion

text: logarithmic phase culture

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: MC2 155

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: wild type genotype

text: logarithmic phase culture

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: MC2 155


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: Ms1 deletion

text: stationary phase culture

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: MC2 155


text: public

text: ArrayExpress

text: wild type genotype

text: stationary phase culture

characteristic: growth condition

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: MC2 155


text: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO6


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO217


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO148


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO143


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. TO124


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. 7215


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. 3426


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. 1639


text: public

text: Citrobacter freundii

text: Citrobacter freundii

text: Citrobacter freundii str. U2785


text: public

text: Citrobacter freundii

text: Citrobacter freundii

text: Citrobacter freundii str. E2614


text: public

text: Acinetobacter calcoaceticus

text: Acinetobacter calcoaceticus

text: Acinetobacter calcoaceticus str. 2117


text: CBM

text: public

text: Complete nucleotide sequence of the sporulation inhibiting plasmid p576 from Bacillus pumilus NRS576

text: Bacillus pumilus

text: Bacillus pumilus

text: Bacillus pumilus plasmid p576


text: all cell types

text: whole synchronised population

text: wild-type

characteristic: ArrayExpress-PHENOTYPE

text: hermaphrodite

characteristic: ArrayExpress-SEX

text: Caenorhabditis elegans

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Caenorhabditis elegans

characteristic: common name

text: Hermaphrodite

characteristic: gender

text: Caenorhabditis elegans

text: wild-type

characteristic: phenotype

text: Caenorhabditis elegans

characteristic: subject id

text: Caenorhabditis elegans


text: ETH ZURICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ETH ZURICH

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Fungus and nematode co-cultivated in microfluidics in triplicates at 20 C and RNA was extracted at indicated time points. The mycelium was harvested and flash frozen in liquid nitrogen. After lyophilizing the mycelium the cells were lyzed using a FastPrep device with glass beads. RNA was extracted using Norgen RNA extraction kit according to the manufacturer's protocol RNA libraries were prepared for sequencing using standard Illumina protocols

characteristic: description

text: predation by nematode Aphelenchus avenae

characteristic: environmental stress

text: microfluidics device

text: Coprinopsis cinerea

text: Coprinopsis cinerea

text: mycelium

characteristic: organism part

text: Coprinopsis cinerea


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH

characteristic: INSDC center name

text: public

text: ArrayExpress

text: microfluidics device

characteristic: growth condition

text: Coprinopsis cinerea

characteristic: organism

text: Coprinopsis cinerea

text: mycelium

text: Coprinopsis cinerea

characteristic: title


text: CCMAR

characteristic: INSDC first public

text: public

text: 4 bacterial organisms bloom

text: synthetic metagenome

text: synthetic metagenome

text: Syntetic metagenome 2-2


text: CCMAR

characteristic: INSDC last update

text: public

text: M1 duplicate with annotation

text: synthetic metagenome

text: synthetic metagenome

text: Syntetic metagenome 5-2


text: Lawrence Berkeley National Laboratory

text: public

characteristic: INSDC status

tag: Namespace:Lawrence Berkeley National Laboratory

text: MGRAST

characteristic: collection date

characteristic: collection time

text: FG2 Taxonomy ID:256318

text: biome

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bodily fluid

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 4650 Essen Lane I-10 Baton Rouge, Lousiana

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Passalid Beetle2

characteristic: project name

characteristic: sample name

text: metagenome

text: illumina

characteristic: sequencing method

text: FG2 Taxonomy ID:256318


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lawrence Berkeley National Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

text: PHG2 Taxonomy ID:256318

characteristic: description

text: biome

text: microbial feature

text: bodily fluid

text: host-associated

text: USA

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: Passalid Beetle2

text: metagenome

text: illumina

text: PHG2 Taxonomy ID:256318

characteristic: title


text: Lawrence Berkeley National Laboratory

text: public

characteristic: INSDC status

text: MGRAST

characteristic: collection date

characteristic: collection time

text: AHG2 Taxonomy ID:256318

text: biome

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bodily fluid

characteristic: environment (material)

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Passalid Beetle2

text: metagenome

text: illumina

text: AHG2 Taxonomy ID:256318


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lawrence Berkeley National Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

text: MG2 Taxonomy ID:256318

text: biome

text: microbial feature

text: bodily fluid

text: host-associated

text: USA

text: host-associated

text: metagenome

text: metagenome

text: Passalid Beetle2

characteristic: project name

characteristic: sample name

text: metagenome

text: illumina

characteristic: sequencing method

text: MG2 Taxonomy ID:256318


text: UCSDMI

text: public

characteristic: INSDC status

text: Unspecified

text: No

characteristic: acne medication

text: No

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: age cat

characteristic: age years

text: Yes

characteristic: alcohol consumption

text: Occasionally (1-2 times/week)

text: Unspecified

text: Yes

text: Yes

text: No

text: Yes

text: No

text: Yes

text: Yes

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: I have not taken antibiotics in the past year.

text: Yes

text: Unspecified

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Obese

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: One

text: I tend to have normal formed stool - Type 3 and 4

text: No

text: Unspecified

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Unspecified

text: Yes

characteristic: chickenpox

characteristic: clinical condition

characteristic: collection date

text: May

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 05/07/2013 19:00

text: No

text: No

characteristic: contraceptive

text: Never

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Unspecified

text: No

text: I use an antiperspirant

text: I do not have this condition

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: Yes

text: I am right handed

text: City

text: Unspecified

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Indoors

text: Primarily breast milk

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: 6 months

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:Unspecified

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: human

text: 135c61f75b4b5b71594dba80c2de085402bdc8f91c63836ea078f42e8f8c493396e966069bea064ce971083c4c25489e19fc51432833bb3db108e12a330af305

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: I have lived in my current state of residence for more than a year.

text: 6 months

text: Unspecified

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: Unspecified

text: No

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Occasionally (1-2 times/week)

text: Never

text: Yes

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Occasionally (1-2 times/week)

text: human gut metagenome

text: Yes

text: Unspecified

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Yes

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: True

text: True

text: False

text: True

text: False

text: True

text: Rarely (less than once/week)

text: Daily

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: Unspecified

text: Regularly (3-5 times/week)

text: Never

text: Occasionally (1-2 times/week)

text: Unspecified

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Unspecified

text: No

characteristic: acne medication

text: No

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: Yes

characteristic: alcohol consumption

text: Daily

text: Unspecified

text: No

text: Yes

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: 6 months

text: No

text: Unspecified

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Four

text: No

text: Unspecified

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: South

text: Yes

text: Unspecified

text: March

text: Spring

text: 03/15/2017 14:00

text: Yes

text: No

text: Daily

text: USA

text: Germany

text: Unspecified

text: No

text: I use an antiperspirant

text: I do not have this condition

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: Yes

text: I am right handed

text: City

text: Unspecified

text: Southeast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: Primarily infant formula

text: Daily

text: Occasionally (1-2 times/week)

text: I have not gotten the flu vaccine in the past year.

text: Rarely (less than once/week)

text: Rarely (less than once/week)

text: I do not have this condition

text: USA:GA

text: No

text: centimeters

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: human

text: 56bae6f9429bc6531b3c3a20b2afc22259fe5822562b9c1abef062bcae5ceac1fc111d26da7183bbfac24fb940cbbb6fda000d326e527ca3fb03db94ac1e8586

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: No

text: 1 year

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Never

text: Yes

text: No

text: Unspecified

text: No

text: Yes

text: Yes

text: Yes

text: No

text: No

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: Yes

text: Unspecified

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Never

text: Yes

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: One

text: No

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: Yes

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: GA

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: Unspecified

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Unspecified

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Unspecified

text: No

text: No

text: Self-diagnosed

text: Yes

text: Regularly (3-5 times/week)

text: Unspecified

text: Yes

text: Yes

text: No

text: No

text: No

text: No

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

text: Month

text: No

text: Unspecified

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Obese

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: No

text: Unspecified

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: South

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: May

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 05/02/2018 14:05

text: Yes

text: No

characteristic: contraceptive

text: Never

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: Unspecified

text: No

text: I use an antiperspirant

text: I do not have this condition

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: Yes

text: I am right handed

text: City

text: Unspecified

text: Southeast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Both

text: Not sure

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Year

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: USA:NC

text: No

text: centimeters

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: human

text: e3fec9892c9baf4df0f834eb40da5bde3e69fa0ea39717150616b419816d00ab865d8d3758efb70155aee7465195f255ccf3cd3b2c5fb36f4e01de82062fba3d

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: 3 months

text: Bachelor's degree

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: Daily

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Daily

text: No

text: No

text: Unspecified

text: No

text: No

text: Yes

text: Yes

text: No

text: No

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: Yes

text: Unspecified

text: UCSDMI

text: Yes

text: I do not have this condition

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: No

text: Regularly (3-5 times/week)

text: Never

text: Yes

text: Caucasian

text: Never

text: Regularly (3-5 times/week)

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: Yes

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: NC

text: True

text: False

text: False

text: True

text: False

text: True

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: Unspecified

text: Daily

text: Never

text: Never

text: Unspecified

text: Increased more than 10 pounds

text: kilograms

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Unspecified

text: No

characteristic: acne medication

text: No

characteristic: age cat

characteristic: age years

text: No

characteristic: alcohol consumption

text: Never

text: Unspecified

text: No

text: No

text: No

text: No

text: Yes

text: No

text: Yes

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: Yes

text: Unspecified

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Less than one

text: I tend to have diarrhea (watery stool) - Type 5, 6 and 7

text: No

text: Unspecified

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: West

text: Yes

text: I do not have this condition

text: September

text: Fall

text: 09/15/2016 10:00

text: Yes

text: No

text: Never

text: USA

text: United States

text: Unspecified

text: No

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: Bottled

text: Unspecified

text: Far West

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Outdoors

text: Primarily infant formula

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: 6 months

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: USA:CA

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Daily

text: human

text: 93fd0e15bdcb08bc3b0648b54d7b8a0c6ad64e63e8d6502b23a864e9f6235524d5f1d7baf1f296b5edcade227f92e9b5bc5c55d002291e960a128fd6ddd6207e

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: I have not been outside of my country of residence in the past year.

text: Some college or technical school

text: I do not have this condition

text: No

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Unspecified

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Rarely (less than once/week)

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Occasionally (1-2 times/week)

text: Daily

text: human gut metagenome

text: No

text: Unspecified

text: UCSDMI

text: Yes

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Yes

text: Caucasian

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: male

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: CA

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: American Gut Project

text: No

text: Unspecified

text: Regularly (3-5 times/week)

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: Yes

text: Regularly (3-5 times/week)

text: Unspecified

text: Yes

text: Yes

text: No

text: Yes

text: No

text: Yes

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Year

text: No

text: Never

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: Unspecified

text: No

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Northeast

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: May

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 05/07/2018 09:25

text: No

text: No

characteristic: contraceptive

text: Rarely (a few times/month)

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: United States

text: No

text: I use deodorant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: Filtered

text: Mideast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Indoors

text: Not sure

text: Occasionally (1-2 times/week)

text: Daily

text: Year

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: Self-diagnosed

text: USA:NY

text: No

text: centimeters

text: Rarely (less than once/week)

text: Never

text: human

text: eea063601141e19954cac48cbb0999b9637eb3b2d225f165e165ca8832591230ecbd6b64d08e1e19afe1093b776f7adbfcb94f8c7012d8467f2a430e415b5272

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: 1 year

text: Bachelor's degree

text: I do not have this condition

text: Not sure

text: Unspecified

text: Regularly (3-5 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Daily

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Unspecified

text: Occasionally (1-2 times/week)

text: No

text: Daily

text: Occasionally (1-2 times/week)

text: Yes

text: Other

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: NY

text: True

text: False

text: True

text: True

text: False

text: True

text: Never

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Never

text: Occasionally (1-2 times/week)

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: No

characteristic: acne medication

text: No

text: I do not have this condition

text: Unspecified

characteristic: age cat

text: Unspecified

characteristic: age years

text: Unspecified

text: Yes

characteristic: alcohol consumption

text: Rarely (a few times/month)

text: Unspecified

text: No

text: Yes

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: Year

text: No

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

text: Unspecified

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: No

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: West

text: Yes

text: I do not have this condition

text: May

text: Spring

text: 05/04/2018 08:00

text: Not sure

text: No

text: Occasionally (1-2 times/week)

text: USA

text: United States

text: United States

text: No

text: I use an antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Vegetarian

text: Yes

text: Yes

text: I am right handed

text: City

text: Far West

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Both

text: Not sure

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Year

text: Never

text: Daily

text: I do not have this condition

text: USA:HI

text: No

text: centimeters

text: Never

text: Daily

text: human

text: 994e0fb6673e402bdde977f613ddf36e89138f250e394bc76831fd871716ec6f5d030d26f8fd65f972c862d1c14063dbc8f1350caa038ee1e93361ab48d86fe3

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Within the past year

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: Unspecified

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Daily

text: Yes

text: No

text: Unspecified

text: No

text: No

text: Yes

text: No

text: No

text: No

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Never

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Never

text: Never

text: No

text: Never

text: Stool

text: human gut metagenome

text: Never

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: HI

text: False

text: False

text: True

text: True

text: False

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Daily

text: Daily

text: Daily

text: Never

text: Remained stable

text: kilograms

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: No

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: Yes

text: Unspecified

text: No

text: Never

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Unspecified

text: Unspecified

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Two

text: No

text: Unspecified

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: South

text: Yes

characteristic: chickenpox

text: Unspecified

characteristic: clinical condition

characteristic: collection date

text: June

characteristic: collection month

text: Summer

characteristic: collection season

characteristic: collection time

text: 06/06/2018 13:30

text: No

text: No

characteristic: contraceptive

text: Never

text: USA

characteristic: country

text: United States

characteristic: country of birth

text: United States

text: Unspecified

text: I do not use deodorant or an antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore but do not eat red meat

text: Yes

text: No

text: I am right handed

text: Filtered

text: Unspecified

text: Southeast

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Indoors

text: A mixture of breast milk and formula

text: Occasionally (1-2 times/week)

text: Daily

text: 6 months

text: Rarely (less than once/week)

text: Daily

text: USA:AL

text: No

text: centimeters

text: Never

text: Daily

text: human

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text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: No

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: Unspecified

text: Unspecified

text: Unspecified

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Self-diagnosed

text: Daily

text: Daily

text: Yes

text: Unspecified

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Occasionally (1-2 times/week)

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Unspecified

text: Regularly (3-5 times/week)

text: No

text: Rarely (less than once/week)

text: Daily

text: Yes

text: Caucasian

text: Never

text: Never

text: One

text: No

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: male

text: I do not have this condition

text: Unspecified

text: 6-7 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: AL

text: True

text: True

text: False

text: True

text: False

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: Yes

text: 6 to 10

text: Daily

text: Daily

text: Daily

text: Unspecified

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Daily


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: No

characteristic: acne medication

text: No

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: No

characteristic: alcohol consumption

text: Never

text: Unspecified

text: No

text: No

text: No

text: No

text: Yes

text: No

text: Yes

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: Year

text: No

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: I do not have this condition

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Normal

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Unspecified

text: No

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: West

text: Yes

text: I do not have this condition

text: May

text: Spring

text: 05/14/2018 07:00

text: Not sure

text: No

text: Never

text: USA

text: United Kingdom

text: United States

text: No

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: City

text: I don't drink

text: Far West

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Outdoors

text: Primarily infant formula

text: Never

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: USA:CA

text: No

text: centimeters

text: Unspecified

text: Daily

text: human

text: 1960d75a2f8f899fa9892feb67828d630e99422fee56d73fe1f34c2cb94d9ce9e76effbbba707988775d04207fddc3613917eca47f59c0b189d1b0dfa07b92cb

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: 1 year

text: Graduate or Professional degree

text: I do not have this condition

text: Yes

text: Unspecified

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Yes

text: Unspecified

text: No

text: Yes

text: No

text: Yes

text: No

text: No

text: Yes

text: No

text: Daily

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text: No

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Regularly (3-5 times/week)

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Rarely (less than once/week)

text: No

text: Rarely (less than once/week)

text: Rarely (a few times/month)

text: Yes

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: CA

text: True

text: False

text: True

text: True

text: False

text: True

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: Yes

text: 6 to 10

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Yes

text: Yes

text: No

text: No

text: No

text: Yes

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

text: No

text: Never

text: I do not have this condition

text: Yes

text: Normal

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: One

text: No

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Unspecified

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

characteristic: collection date

text: April

characteristic: collection month

text: Spring

characteristic: collection season

characteristic: collection time

text: 04/24/2018 11:30

text: Not sure

text: No

characteristic: contraceptive

text: Regularly (3-5 times/week)

text: United Kingdom

characteristic: country

text: United Kingdom

characteristic: country of birth

text: United Kingdom

text: No

text: Not sure, but I use some form of deodorant/antiperspirant

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: Filtered

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Both

text: Not sure

text: Rarely (less than once/week)

text: Rarely (a few times/month)

text: Rarely (less than once/week)

text: Unspecified

text: I do not have this condition

text: United Kingdom:Unspecified

text: No

text: centimeters

text: Rarely (less than once/week)

text: Daily

text: human

text: 237f914463b13d55bb0e769d623435469ee1d7808dd69e48be895f19106723a16b07f408d0ed0a136769d427efd51a237cd3e66d7129ffa5ec293d93c041ec60

text: I do not have this condition

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Unspecified

text: Graduate or Professional degree

text: I do not have this condition

text: Not sure

text: Unspecified

text: Unspecified

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Yes

text: Unspecified

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Yes

text: Caucasian

text: Never

text: Rarely (less than once/week)

text: No

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Regularly (3-5 times/week)

text: Yes

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Unspecified

text: True

text: True

text: True

text: True

text: True

text: True

text: Never

text: Rarely (less than once/week)

text: Daily

text: American Gut Project

text: No

text: 21 to 30

text: Regularly (3-5 times/week)

text: Never

text: Daily

text: Occasionally (1-2 times/week)

text: Increased more than 10 pounds

text: kilograms

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: No

characteristic: acne medication

text: No

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: Yes

characteristic: alcohol consumption

text: Regularly (3-5 times/week)

text: Unspecified

text: Yes

text: Yes

text: No

text: No

text: No

text: Yes

text: Yes

characteristic: allergic to i have no food allergies that i know of

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: I do not have this condition

characteristic: alzheimers

characteristic: anonymized name

text: I have not taken antibiotics in the past year.

text: No

text: Never

text: I do not have this condition

characteristic: asd

text: Yes

text: Diagnosed by a medical professional (doctor, physician assistant)

characteristic: autoimmune

characteristic: birth year

characteristic: bmi

text: Overweight

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Five or more

text: No

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: Unspecified

text: Yes

text: April

text: Spring

text: 04/17/2018 06:20

text: Not sure

text: No

text: Never

text: United Kingdom

text: United Kingdom

text: United Kingdom

text: No

text: Unspecified

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: Filtered

text: Unspecified

text: Unspecified

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Indoors

text: A mixture of breast milk and formula

text: Daily

text: Regularly (3-5 times/week)

text: Never

text: Daily

text: I do not have this condition

text: United Kingdom:England

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Daily

text: human

text: 10d7832a4b3a595af64bdecf62671e909ede821964be8affdfef83915752e4f9245d5d402add696d3585d526c11c3ba2d5f98405b92a0a738dbf89640e54c2c9

text: Unspecified

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: Yes

text: 3 months

text: Some college or technical school

text: I do not have this condition

text: Yes

text: No

text: I do not have this condition

text: Daily

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: No

text: No

text: Yes

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Daily

text: No

text: No

text: Unspecified

text: No

text: No

text: No

text: No

text: No

text: Yes

text: Daily

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: No

text: Never

text: Daily

text: Yes

text: Caucasian

text: Never

text: Regularly (3-5 times/week)

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: No

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: Unspecified

text: England

text: True

text: True

text: True

text: True

text: False

text: False

text: Never

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: More than 30

text: Daily

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Daily