text: Canis lupus familiaris

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

text: public

text: dog

characteristic: common name

text: Canis lupus familiaris

text: Canis lupus familiaris

characteristic: subject id


status: PUBLIC

text: Homo Sapiens

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


text: Epithelial cell

text: Cecum

text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

text: public

text: house mouse

text: Female

characteristic: gender

text: Mus musculus

text: Mus musculus

text: Mus musculus uninfected 4


text: Epithelial cell

text: Cecum

text: female

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus

text: Mus musculus uninfected 5


text: Epithelial cell

text: Cecum

text: female

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus

text: Mus musculus uninfected 6


text: Epithelial cell

text: Cecum

text: female

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Female

text: Mus musculus

text: Mus musculus

text: Mus musculus infected 4


text: Epithelial cell

text: Cecum

text: female

text: Mus musculus

text: SC

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: Mus musculus infected 5


text: Epithelial cell

text: Cecum

text: female

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus

text: Mus musculus infected 6


text: female

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus


text: Epithelial cell

text: Cecum

text: female

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Female

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: public

tag: Namespace:GEOMAR Helmholtz Centre for Ocean Research Kiel

characteristic: collection date

text: black hamlet

text: reef fish (hamlet) sample, part of speciation study

characteristic: description

text: Panama

characteristic: geographic location (country and/or sea)

text: Bocas del Toro

characteristic: geographic location (region and locality)

text: 09.318 N, -082.222 E

characteristic: lat lon

text: Hypoplectrus nigricans

text: Hypoplectrus nigricans

text: retina

characteristic: tissue type


text: UNIBE-IG

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: dog

text: Leonberger - male

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Leonberger

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIBE-IG

characteristic: INSDC first public

text: public

text: dog

characteristic: common name

text: Leonberger - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIBE-IG

text: public

text: dog

text: Great Pyrenees - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Great Pyrenees


text: UNIBE-IG

text: public

text: dog

text: Newfoundland - male

characteristic: description

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Newfoundland


text: UNIBE-IG

text: public

text: dog

text: St. Bernard - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: St. Bernard


text: UNIBE-IG

text: public

text: dog

text: Malinois - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Malinois


text: UNIBE-IG

text: public

text: dog

text: Hovawart - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Hovawart


text: UNIBE-IG

text: public

text: dog

text: West Highland White Terrier - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: West Highland White Terrier


text: UNIBE-IG

text: public

text: dog

text: Alaskan Malamute - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Alaskan Malamute


text: UNIBE-IG

text: public

text: dog

text: English Bulldog - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: English Bulldog


text: UNIBE-IG

text: public

text: dog

text: Curly Coated Retriever - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Curly Coated Retriever


text: UNIBE-IG

text: public

text: dog

text: Curly Coated Retriever - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Curly Coated Retriever


text: UNIBE-IG

text: public

text: dog

text: Greyhound -male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Greyhound


text: UNIBE-IG

text: public

text: dog

text: Greyhound - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Greyhound


text: UNIBE-IG

text: public

text: dog

text: Alpine Dachsbracke - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Alpine Dachsbracke


text: UNIBE-IG

text: public

text: dog

text: Chihuahua - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Chihuahua


text: EAST CAROLINA UNIVERSITY

text: public

tag: Namespace:EAST CAROLINA UNIVERSITY

text: mimic poison frog

characteristic: dev stage

text: Huallaga

characteristic: ecotype

text: Ranitomeya imitator

text: Ranitomeya imitator

text: skin


text: EAST CAROLINA UNIVERSITY

text: public

text: mimic poison frog

text: Sauce

text: Ranitomeya imitator

text: Ranitomeya imitator

text: skin

characteristic: tissue type


text: EAST CAROLINA UNIVERSITY

characteristic: INSDC center name

text: public

text: mimic poison frog

text: Tarapoto

text: Ranitomeya imitator

text: Ranitomeya imitator

text: skin


text: EAST CAROLINA UNIVERSITY

characteristic: INSDC last update

text: public

text: mimic poison frog

text: Varadero

text: Ranitomeya imitator

text: Ranitomeya imitator

text: skin


text: UCSDMI

text: public

characteristic: INSDC status

characteristic: anonymized name

text: Missing: Restricted access

characteristic: bmi

text: UBERON:respiratory system

characteristic: body habitat

text: UBERON:bodily fluid

characteristic: body product

text: UBERON:lung

characteristic: body site

text: cystic fibrosis

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

characteristic: env package

text: bodily fluid

text: USA:CA:San Diego

characteristic: geo loc name

text: Missing: Restricted access

characteristic: height

text: cm

text: UBERON:respiratory system

characteristic: host body habitat

text: Restricted access

characteristic: host body mass index

text: UBERON:bodily fluid

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

characteristic: host common name

text: Restricted access

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: patient 2

characteristic: host subject id

characteristic: host taxid

text: Restricted access

characteristic: host weight

text: cm

text: kg

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: human lung metagenome

text: UCSDMI

text: TRUE

text: TRUE

characteristic: public

text: lung tissue

characteristic: sample type

text: human lung metagenome

text: Restricted access

characteristic: sex

text: Cystic Fibrosis 3D reconstruction

text: Missing: Restricted access

characteristic: weight

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: Missing: Restricted access

characteristic: bmi

text: UBERON:respiratory system

characteristic: body habitat

text: UBERON:bodily fluid

characteristic: body product

text: UBERON:lung

characteristic: body site

characteristic: description

text: cystic fibrosis

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

characteristic: env package

text: bodily fluid

text: USA:CA:San Diego

characteristic: geo loc name

text: Missing: Restricted access

characteristic: height

text: cm

text: UBERON:respiratory system

characteristic: host body habitat

text: Restricted access

text: UBERON:bodily fluid

text: UBERON:lung

text: human

text: Restricted access

text: Homo sapiens

text: patient 2

text: Restricted access

text: cm

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text: adult

text: human lung metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: TRUE

text: lung tissue

text: human lung metagenome

text: Restricted access

characteristic: title

text: Cystic Fibrosis 3D reconstruction

text: Missing: Restricted access

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

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text: public

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text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

characteristic: host subject id

characteristic: latitude

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text: metagenome

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text: TRUE

text: TRUE

characteristic: public

text: control blank

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text: Cystic Fibrosis 3D reconstruction


text: UCSDMI

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characteristic: Submitter Id

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text: Missing: Restricted access

characteristic: bmi

text: UBERON:respiratory system

characteristic: body habitat

text: UBERON:bodily fluid

characteristic: body product

text: UBERON:lung

characteristic: body site

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text: cystic fibrosis

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

characteristic: env package

text: bodily fluid

text: USA:CA:San Diego

characteristic: geo loc name

text: Missing: Restricted access

characteristic: height

text: cm

text: UBERON:respiratory system

characteristic: host body habitat

text: Restricted access

characteristic: host body mass index

text: UBERON:bodily fluid

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

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characteristic: host height

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text: Restricted access

characteristic: host weight

text: cm

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characteristic: life stage

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text: UCSDMI

text: TRUE

text: TRUE

text: lung tissue

text: human lung metagenome

text: Restricted access

characteristic: sex

text: Cystic Fibrosis 3D reconstruction

text: Missing: Restricted access

characteristic: weight

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: Missing: Restricted access

characteristic: bmi

text: UBERON:respiratory system

characteristic: body habitat

text: UBERON:bodily fluid

characteristic: body product

text: UBERON:lung

characteristic: body site

characteristic: description

text: cystic fibrosis

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-associated

text: bodily fluid

text: USA:CA:San Diego

text: Missing: Restricted access

text: cm

text: UBERON:respiratory system

text: Restricted access

text: UBERON:bodily fluid

text: UBERON:lung

text: human

text: Restricted access

text: Homo sapiens

text: patient 3

characteristic: host subject id

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text: cm

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characteristic: latitude

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text: human lung metagenome

characteristic: organism

text: UCSDMI

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text: TRUE

characteristic: public

text: lung tissue

characteristic: sample type

text: human lung metagenome

text: Restricted access

characteristic: title

text: Cystic Fibrosis 3D reconstruction

text: Missing: Restricted access

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

text: metagenome

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text: TRUE

text: control blank

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text: Cystic Fibrosis 3D reconstruction


text: UCSDMI

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characteristic: Submitter Id

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text: Missing: Restricted access

characteristic: bmi

text: UBERON:respiratory system

characteristic: body habitat

text: UBERON:bodily fluid

characteristic: body product

text: UBERON:lung

characteristic: body site

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text: cystic fibrosis

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

text: human-associated

text: bodily fluid

text: USA:CA:San Diego

text: Missing: Restricted access

characteristic: height

text: cm

text: UBERON:respiratory system

characteristic: host body habitat

text: Restricted access

characteristic: host body mass index

text: UBERON:bodily fluid

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

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characteristic: host height

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characteristic: host scientific name

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characteristic: host subject id

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text: Restricted access

characteristic: host weight

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characteristic: latitude

text: adult

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text: human lung metagenome

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text: TRUE

text: lung tissue

text: human lung metagenome

text: Restricted access

characteristic: sex

text: Cystic Fibrosis 3D reconstruction

text: Missing: Restricted access

characteristic: weight

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UCSDMI

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text: public

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text: Missing: Restricted access

characteristic: bmi

text: UBERON:respiratory system

characteristic: body habitat

text: UBERON:bodily fluid

characteristic: body product

text: UBERON:lung

characteristic: body site

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text: cystic fibrosis

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

characteristic: env package

text: bodily fluid

text: USA:CA:San Diego

characteristic: geo loc name

text: Missing: Restricted access

text: cm

text: UBERON:respiratory system

text: Restricted access

text: UBERON:bodily fluid

text: UBERON:lung

text: human

text: Restricted access

text: Homo sapiens

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text: Restricted access

text: cm

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characteristic: organism

text: UCSDMI

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text: TRUE

characteristic: public

text: lung tissue

characteristic: sample type

text: human lung metagenome

text: Restricted access

characteristic: title

text: Cystic Fibrosis 3D reconstruction

text: Missing: Restricted access

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: control blank

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: metagenome

text: UCSDMI

text: TRUE

text: TRUE

text: control blank

text: metagenome

text: Cystic Fibrosis 3D reconstruction


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: anonymized name

text: PATIENT 4 CONTROL EMPTY

characteristic: description

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

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text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

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text: TRUE

text: TRUE

text: control blank

text: metagenome

text: Cystic Fibrosis 3D reconstruction


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

text: PATIENT 4 CONTROL EMPTY

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: TRUE

characteristic: public

text: control blank

characteristic: sample type

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text: Cystic Fibrosis 3D reconstruction

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text: UCSDMI

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: Isolate

text: TRUE

text: Free-living

text: Non-saline

text: Surface (non-saline)

text: urban biome

text: research facility

text: microbial mat/biofilm

text: biofilm material

text: USA:CA:San Diego

characteristic: host subject id

characteristic: latitude

characteristic: longitude

text: biofilm metagenome

text: UCSDMI

text: TRUE

text: TRUE

text: bacterial culture

text: biofilm metagenome

text: Cystic Fibrosis 3D reconstruction


text: UCSDMI

text: public

characteristic: Submitter Id

characteristic: anonymized name

text: Isolate

characteristic: description

text: TRUE

characteristic: elevation

text: Free-living

text: Non-saline

text: Surface (non-saline)

text: urban biome

characteristic: env biome

text: research facility

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text: microbial mat/biofilm

characteristic: env package

text: biofilm material

text: USA:CA:San Diego

characteristic: geo loc name

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text: TRUE

text: TRUE

text: bacterial culture

text: biofilm metagenome

text: Cystic Fibrosis 3D reconstruction


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF WATERL

text: public

tag: Namespace:UNIVERSITY OF WATERL

characteristic: collection date

text: soil column

characteristic: environment (biome)

text: soil column

characteristic: environment (feature)

text: artificial soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Sample

characteristic: miscellaneous parameter

text: metagenome

characteristic: organism

text: Artificial soil column

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Artificial soil

characteristic: title


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF WATERL

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: soil column

text: soil column

text: artificial soil

text: Canada

text: metagenome

text: metagenome

text: Artificial soil column

text: metagenome

text: Illumina

text: Artificial soil


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


text: KFU-TU

text: public

text: metagenome

characteristic: organism

text: metagenome


text: CNGB

text: public

text: CNSA

characteristic: broker name

characteristic: collection date

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871219E

characteristic: latitude and longitude

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871186E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871214E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

text: CNSA

characteristic: broker name

characteristic: collection date

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871212E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


text: CNGB

text: public

text: CNSA

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871169E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871230E

characteristic: latitude and longitude

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871218E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871217E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: External Id

text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871170E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

characteristic: collection date

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871192E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

text: CNSA

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871171E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871232E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871180E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871182E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

text: public

characteristic: INSDC status

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871227E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


text: CNGB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871168E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871213E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871250E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871209E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871245E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871203E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871210E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


text: CNGB

text: public

text: CNSA

characteristic: broker name

characteristic: collection date

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871181E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871199E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871238E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871205E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871251E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871215E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

text: CNSA

characteristic: broker name

characteristic: collection date

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871240E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

text: Samples from cervical mucus

characteristic: description

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871198E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871183E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871239E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871173E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871248E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

characteristic: collection date

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871244E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

text: Samples from cervical mucus

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871224E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871236E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871202E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871174E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871208E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871187E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from lower third of vagina

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871220E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871189E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871247E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871234E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871226E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871191E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871237E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871241E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871233E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871201E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871228E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871200E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871252E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871196E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from cervical mucus

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871172E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871243E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871206E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871235E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871225E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871179E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871222E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871229E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871211E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from peritoneal fluid

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871231E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871197E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871178E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871216E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871190E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from peritoneal fluid

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871249E

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from posterior fornix

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871221E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from peritoneal fluid

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871175E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871195E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871193E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871207E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871167E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from cervical mucus

characteristic: description

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871204E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: CNGB

text: public

text: CNSA

characteristic: collection date

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871246E

text: human reproductive system metagenome

text: human reproductive system metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

characteristic: geographic location

text: Homo sapiens

text: 22.5537717N, 114.0871194E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: ENA-LAST-UPDATE

text: CNGB

characteristic: INSDC first public

text: public

text: CNSA

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

characteristic: host

text: 22.5537717N, 114.0871223E

text: human reproductive system metagenome

text: human reproductive system metagenome


characteristic: External Id

text: CNGB

characteristic: INSDC last update

text: public

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871242E

text: human reproductive system metagenome

characteristic: organism

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CNSA

text: Samples from cervical mucus

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871188E

characteristic: latitude and longitude

text: human reproductive system metagenome

text: human reproductive system metagenome


text: CNGB

text: public

characteristic: Submitter Id

text: CNSA

characteristic: broker name

text: Samples from peritoneal fluid

text: Shenzhen

text: Homo sapiens

text: 22.5537717N, 114.0871253E

text: human reproductive system metagenome

characteristic: sample name

text: human reproductive system metagenome


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF LEEDS

text: public

tag: Namespace:UNIVERSITY OF LEEDS

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Real WES reads for use as probes with w-Wessim


E-MTAB-7162:BCM-300 rep1

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7162:BCM-300 rep1

tag: Namespace:Max von Pettenkofer Institute, Faculty of Medicine, LMU Munich

text: ArrayExpress

text: Protocols: H. pylori strains were grown in liquid cultures as described in: Bubendorfer, S., Krebes, J., Yang, I., Hage, E., Schulz, T.F., Bahlawane, C., Didelot, X. and Suerbaum, S. (2016) Genome-wide analysis of chromosomal import patterns after natural transformation of Helicobacter pylori. Nat. Commun., 7, 11995. For RNA extraction, 5 ml of bacterial cells grown in liquid medium were pelleted (4°C, 6000 x g, 3 110 min), snap-frozen in liquid nitrogen and stored at -80 °C. Afterwards, bacterial pellets were disrupted with a FastPrep® FP120 Cell Disrupter (Thermo Savant) using Lysing Matrix B 2 ml tubes containing 0.1 mm silica beads (MP Biomedicals, Eschwege, Germany). Isolation of RNA was performed using the RNeasy kit (Qiagen, Hilden, Germany) and on-column DNase digestion with DNase I. A second DNase treatment was carried out using the TURBO DNA-free™ Kit (Ambion, Kaufungen, Germany). Total rRNA depletion was performed prior to cDNA synthesis using a RiboZero Kit (Illumina, Germany). cDNA library was performed with random primers.

characteristic: description

text: wild type genotype

characteristic: genotype

text: cell suspension culture

characteristic: growth condition

text: Helicobacter pylori

text: Helicobacter pylori

text: wild type

characteristic: phenotype

text: Helicobacter pylori

characteristic: strain

text: BCM-300 rep1

characteristic: title


E-MTAB-7162:BCM-300 rep2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Max von Pettenkofer Institute, Faculty of Medicine, LMU Munich

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7162:BCM-300 rep2

text: ArrayExpress

text: wild type genotype

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: wild type

text: Helicobacter pylori

text: BCM-300 rep2


E-MTAB-7162:BCM-300 rep3

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7162:BCM-300 rep3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: cell suspension culture

text: Helicobacter pylori

characteristic: organism

text: Helicobacter pylori

text: wild type

text: Helicobacter pylori

text: BCM-300 rep3


E-MTAB-7162:BCM-300-mut rep1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7162:BCM-300-mut rep1

text: ArrayExpress

characteristic: broker name

text: JHP1050 mutant

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: GCGC-MTase JHP1050 mutant

text: Helicobacter pylori

text: BCM-300-mut rep1


E-MTAB-7162:BCM-300-mut rep2

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7162:BCM-300-mut rep2

text: ArrayExpress

characteristic: description

text: JHP1050 mutant

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: GCGC-MTase JHP1050 mutant

text: Helicobacter pylori

text: BCM-300-mut rep2


E-MTAB-7162:BCM-300-mut rep3

text: public

text: E-MTAB-7162:BCM-300-mut rep3

text: ArrayExpress

text: JHP1050 mutant

characteristic: genotype

text: cell suspension culture

characteristic: growth condition

text: Helicobacter pylori

text: Helicobacter pylori

text: GCGC-MTase JHP1050 mutant

text: Helicobacter pylori

text: BCM-300-mut rep3


E-MTAB-7162:J99 rep1

text: public

text: E-MTAB-7162:J99 rep1

text: ArrayExpress

text: wild type genotype

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: wild type

characteristic: phenotype

text: Helicobacter pylori

characteristic: strain

text: J99 rep1


E-MTAB-7162:J99 rep2

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7162:J99 rep2

text: ArrayExpress

text: wild type genotype

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: wild type

text: Helicobacter pylori

text: J99 rep2

characteristic: title


E-MTAB-7162:J99 rep3

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-7162:J99 rep3

text: ArrayExpress

text: wild type genotype

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: wild type

text: Helicobacter pylori

text: J99 rep3


E-MTAB-7162:J99-mut rep1

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7162:J99-mut rep1

text: ArrayExpress

text: JHP1050 mutant

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: GCGC-MTase JHP1050 mutant

text: Helicobacter pylori

text: J99-mut rep1


E-MTAB-7162:J99-mut rep2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7162:J99-mut rep2

text: ArrayExpress

text: JHP1050 mutant

text: cell suspension culture

text: Helicobacter pylori

text: Helicobacter pylori

text: GCGC-MTase JHP1050 mutant

text: Helicobacter pylori

text: J99-mut rep2


name: E-MTAB-7155:4-day broccoli sprout total RNA

text: public

tag: Namespace:Chirurgische Klinik Universitat Ruprecht-Karls-Universitat Heidelberg

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

text: field mustard

characteristic: common name

text: Protocols: Seeds of the sulforaphane-rich broccoli prototype Brassica rapa sylvestris (Megerle Online GmbH, Ubstadt-Weiher, Germany) were cultivated in a sterile beaker with distilled water at room temperature. After 4 days of germinating, the whole sprouts including the tiny roots were gently collected, minced with sterile scissors and rapidly frozen in liquid nitrogen. performing PCR amplification according to manufacturer instructions NEBNext® Small RNA Library Prep Set for Illumina® (Multiplex Compatible) (NEB, Cat No.: E7330). 94°C and 30 sec for initial denaturation，94°C and 15 sec for denaturation, 62°C and 30 sec for Annealing, 70°C and 15 sec for extension, 70°C and 5 min for final extension, followed by 4°C Hold Total RNA was extracted by Ambion® Plant RNA isolation aid, followed by isolation of miRNAs by the mirVanaTM miRNA isolation kit (both from Life Technologies GmbH, Darmstadt, Germany) according to the manufacturer’s instructions. The RNA concentration was evaluated with a NanoDrop 2000 Spectrophotometer. Libraries were prepared using the NEBNext® Small RNA Library Prep Set for Illumina® (Multiplex Compatible) (NEB, Cat No.: E7330) following manufacturer instructions and using 100 ng total RNA obtained from 4-day broccoli sprouts.

text: seedling development stage

characteristic: developmental stage

text: sylvestris

characteristic: ecotype

text: wild type genotype

text: distilled water at room temperature

text: Brassica rapa

characteristic: organism

text: Brassica rapa

text: whole organism

characteristic: organism part

text: Brassica rapa

text: 4-day broccoli sprout total RNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF BERN

text: public

tag: Namespace:UNIVERSITY OF BERN

text: cattle

text: Bos taurus

text: Bos taurus


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


text: synthetic construct

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: synthetic construct

text: synthetic construct

text: synthetic construct

characteristic: title


text: synthetic construct

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: synthetic construct

text: synthetic construct

text: synthetic construct


Galerucella calmariensis 1

text: STOCKHOLM UNIVERSITY

text: public

characteristic: SRA accession

text: Galerucella calmariensis 1

tag: Namespace:STOCKHOLM UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 12 hours treatment (infected by Asecodes parviclava), replicate 1

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

text: Differential expression of immune genes between two closely related beetle species with different immunocompetence following attack by Asecodes parviclava

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method

text: RNA-seq of Galerucella pusilla and Galerucella calmariensis after wasp infection


Galerucella calmariensis 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 2

text: Galerucella calmariensis 12 hours treatment (infected by Asecodes parviclava), replicate 2

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 3

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 3

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 12 hours control (not infected), replicate 1

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500


Galerucella calmariensis 4

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 4

text: Galerucella calmariensis 12 hours control (not infected), replicate 2

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella calmariensis 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 5

text: Galerucella calmariensis 1 hour treatment (infected by Asecodes parviclava), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 6

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 6

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 1 hour treatment (infected by Asecodes parviclava), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500


Galerucella calmariensis 7

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 7

text: Galerucella calmariensis 1 hour treatment (infected by Asecodes parviclava), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella calmariensis 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 8

text: Galerucella calmariensis 1 hour treatment (infected by Asecodes parviclava), replicate 4

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 9

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 9

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 1 hour treatment (infected by Asecodes parviclava), replicate 5

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500


Galerucella calmariensis 10

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 10

text: Galerucella calmariensis 1 hour treatment (infected by Asecodes parviclava), replicate 6

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella calmariensis 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 11

text: Galerucella calmariensis 1 hour control (not infected), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 12

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 12

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 1 hour control (not infected), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500


Galerucella calmariensis 13

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 13

text: Galerucella calmariensis 1 hour control (not infected), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella calmariensis 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 14

text: Galerucella calmariensis 1 hour control (not infected), replicate 4

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 15

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 15

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 1 hour control (not infected), replicate 5

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500


Galerucella calmariensis 16

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 16

text: Galerucella calmariensis 1 hour control (not infected), replicate 6

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella calmariensis 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 17

text: Galerucella calmariensis 4 hours treatment (infected by Asecodes parviclava), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Differential expression of immune genes between two closely related beetle species with different immunocompetence following attack by Asecodes parviclava

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 18

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 18

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 4 hours treatment (infected by Asecodes parviclava), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500

text: RNA-seq of Galerucella pusilla and Galerucella calmariensis after wasp infection


Galerucella calmariensis 19

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 19

text: Galerucella calmariensis 4 hour control (not infected), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella calmariensis 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella calmariensis 20

text: Galerucella calmariensis 4 hour control (not infected), replicate 2

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

characteristic: organism

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: title


Galerucella calmariensis 21

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella calmariensis 21

characteristic: Submitter Id

characteristic: collection date

text: Galerucella calmariensis 4 hour control (not infected), replicate 3

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella calmariensis

text: Galerucella calmariensis

text: Illumina HiSeq 2500


Galerucella calmariensis 22

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella calmariensis 22

text: Galerucella calmariensis 4 hour control (not infected), replicate 4

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella calmariensis

characteristic: project name

text: Galerucella calmariensis

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 1

text: Galerucella pusilla 12 hours treatment (infected by Asecodes parviclava), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 2

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 2

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 12 hours treatment (infected by Asecodes parviclava), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 3

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 3

text: Galerucella pusilla 12 hours treatment (infected by Asecodes parviclava), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 4

text: Galerucella pusilla 12 hourscontrol (not infected), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 5

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 5

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 12 hourscontrol (not infected), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 6

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 6

text: Galerucella pusilla 12 hourscontrol (not infected), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 7

text: Galerucella pusilla 4 hours treatment (infected by Asecodes parviclava), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 8

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 8

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 4 hours treatment (infected by Asecodes parviclava), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 9

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 9

text: Galerucella pusilla 4 hours treatment (infected by Asecodes parviclava), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 10

text: Galerucella pusilla 4 hours treatment (infected by Asecodes parviclava), replicate 4

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 11

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 11

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 1

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Differential expression of immune genes between two closely related beetle species with different immunocompetence following attack by Asecodes parviclava

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 12

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 12

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 2

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method

text: RNA-seq of Galerucella pusilla and Galerucella calmariensis after wasp infection


Galerucella pusilla 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 13

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 14

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 14

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 4

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 15

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 15

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 5

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 16

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 6

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 17

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 17

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 7

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 18

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 18

text: Galerucella pusilla 1 hours treatment (infected by Asecodes parviclava), replicate 8

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 19

text: Galerucella pusilla 1 hours control (not infected), replicate 1

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 20

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 20

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 1 hours control (not infected), replicate 2

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 21

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 21

text: Galerucella pusilla 1 hours control (not infected), replicate 3

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


Galerucella pusilla 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: STOCKHOLM UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Galerucella pusilla 22

text: Galerucella pusilla 1 hours control (not infected), replicate 4

text: Wetlands

text: Grasslands near a lake

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

characteristic: organism

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: title


Galerucella pusilla 23

text: STOCKHOLM UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Galerucella pusilla 23

characteristic: Submitter Id

characteristic: collection date

text: Galerucella pusilla 1 hours control (not infected), replicate 5

characteristic: description

text: Wetlands

characteristic: environment (biome)

text: Grasslands near a lake

characteristic: environment (feature)

text: Insect

text: Sweden

text: host-associated

text: metatranscriptome

text: Galerucella pusilla

text: Galerucella pusilla

text: Illumina HiSeq 2500


Galerucella pusilla 24

text: STOCKHOLM UNIVERSITY

text: public

text: Galerucella pusilla 24

text: Galerucella pusilla 1 hours control (not infected), replicate 6

text: Wetlands

text: Grasslands near a lake

text: Insect

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

characteristic: investigation type

text: Galerucella pusilla

characteristic: project name

text: Galerucella pusilla

text: Illumina HiSeq 2500

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERN

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: cattle

characteristic: common name

text: Bos taurus

characteristic: organism

text: Bos taurus

characteristic: title


text: gut metagenome

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gut metagenome

text: gut metagenome

text: gut metagenome

characteristic: subject id


text: public

tag: Namespace:RIVM - National Institute for Public Health and the Environment

characteristic: collection date

text: Netherlands

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: stx2f-carrying Escherchia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RIVM - National Institute for Public Health and the Environment

characteristic: INSDC center name

text: public

text: Netherlands

text: not provided

text: Human

text: feces

text: Escherichia coli

text: Escherichia coli

text: stx2f-carrying Escherchia coli


characteristic: INSDC first public

text: public

text: Netherlands

text: not provided

text: Human

text: feces

text: Escherichia albertii

characteristic: organism

text: Escherichia albertii

text: stx2f-carrying Escherchia coli

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Netherlands

text: not provided

text: Pigeon

text: feces

text: Escherichia coli

text: Escherichia coli

text: stx2f-carrying Escherchia coli


text: public

characteristic: Submitter Id

characteristic: collection date

text: Netherlands

text: not provided

text: Pigeon

text: feces

text: Escherichia albertii

text: Escherichia albertii

text: stx2f-carrying Escherchia coli


text: public

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Leafy green

text: Leafy green

text: Escherichia coli

text: Escherichia coli

text: stx2f-carrying Escherchia coli


text: public

text: Netherlands

text: Spinach

characteristic: host scientific name

text: Wash water

text: Escherichia coli

text: Escherichia coli

text: stx2f-carrying Escherchia coli


text: public

text: Netherlands

text: not provided

characteristic: host health state

text: Dairy goat

characteristic: isolate

text: feces

text: Escherichia coli

text: Escherichia coli

text: stx2f-carrying Escherchia coli


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: sam_e0b41798-f9f6-44f4-a84e-aaee07ffb6ae

tag: Namespace:University Hospital Galway

text: University Hospital Galway

characteristic: collected by

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Kentucky


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: sam_60cba0f0-0a07-4d79-a418-bf6a5ffef569

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Enteritidis


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_ff3851e3-f536-40fd-9773-2282a4e33e15

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Infantis

characteristic: organism


text: University Hospital Galway

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sam_0ce61c09-9fda-4427-b0d5-4b2909928afd

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: title


text: University Hospital Galway

text: public

characteristic: SRA accession

text: sam_db4d7ec1-0c89-4ad2-91e9-f7892e958b10

characteristic: Submitter Id

text: University Hospital Galway

characteristic: collection date

text: Ireland

text: Homo sapien


text: University Hospital Galway

text: public

text: sam_c892a98b-ce4f-4c9f-92e4-1fc103cff993

text: University Hospital Galway

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien

characteristic: host scientific name

text: Salmonella enterica subsp. enterica serovar Corvallis


characteristic: ENA checklist

text: University Hospital Galway

text: public

text: sam_39b9526d-2202-4937-b4ba-b24125fa3ebd

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: isolate


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: sam_869c2fc7-39e6-4914-ab11-16b947a59181

text: University Hospital Galway

characteristic: collected by

text: Ireland

text: Homo sapien


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: sam_7a95f9e7-e3ce-4bed-8134-3e8fe491bb33

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Derby


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: sam_a63606c4-f727-48eb-b088-e26ec07b2524

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Dublin


E-MTAB-7163:Sample 1_input

text: SHANGHAI JIAO TONG UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-7163:Sample 1_input

tag: Namespace:SHANGHAI JIAO TONG UNIVERSITY

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: All lung cancer blood samples were obtained from patients with adenocarcinoma and control blood samples were from healthy volunteers. All blood from lung cancer patients and controls (∼5 ml), was collected in tubes containing EDTA as anti-coagulant. Centrifuge blood samples for 15 min at 1500 x g, and then transfer plasma to clean tubes. The plasma was aliquoted in ~1 ml fractions to avoid multiple freeze-thaw times and stored at -80℃ until DNA extraction. The cfDNA was extracted from 1ml plasma using QIAamp Circulating Nucleic Acid kit (Qiagen, 55114) according to the manufacturer’s protocol. Qubit (Invitrogen) was used to analysis the concentration of cfDNA in the plasma. The distribution of cfDNA size was estimated by the Agilent Bioanalyzer 2100. The obtained cfDNA was performed for end repair, dA overhanging, Illumina sequencing adapter ligation to get original library. Then, the library was denatured at 95°C for 10 min, immediately ten minutes on ice, then incubated with 5-Methylcytosine (5-mC) Monoclonal Antibody (Epigentek, A-1014) that was bound on Magna ChIP Protein A+G Magnetic beads (Millipore, 16-663) for 4°C overnight, and decrosslinked subsequently. The products were amplified using Q5 High-Fidelity DNA Polymerase (NEB, M0491). The PCR reactions were then purified using AMPure XP beads (Beckman). Amplificated libraries were detected DNA fragmentation size by Agilent Bioanalyzer 2100 (Agilent Technologies) and determined concentration with the Qubit assay (Invitrogen).

characteristic: description

text: lung adenocarcinoma

characteristic: disease

text: IIA

characteristic: disease staging

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood plasma

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1_input


E-MTAB-7163:Sample 1_5-mC

characteristic: ENA-CHECKLIST

text: SHANGHAI JIAO TONG UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7163:Sample 1_5-mC

characteristic: Submitter Id

text: ArrayExpress

text: human

text: lung adenocarcinoma

text: IIA

text: Homo sapiens

text: Homo sapiens

text: blood plasma

text: Homo sapiens

text: male

text: Sample 1_5-mC

characteristic: title