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tag: Namespace:University of Florida Whitney Laboratory for Marine Bioscience

text: We collected RNAseq data from coral larvae exposed to different environmental treatments

text: Pocillopora damicornis

text: Pocillopora damicornis

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text: Nanyang Technological University Food Technology Centre

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characteristic: External Id

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value: mg/L

value: norfloxacin

value: trimethoprim

value: CLSI

value: gentamicin

value: ampicillin

value: resistant

value: ceftriaxone


text: public

text: SGP

characteristic: SRA accession

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Duck rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: amikacin

value: susceptible

value: Escherichia coli

value: chloramphenicol

value: disk diffusion

value: meropenem

value: tigecycline

value: ofloxacin

value: cefepime

value: piperacillin-tazobactam

value: trimethoprim-sulfamethoxazole


text: public

text: SGP

characteristic: Submitter Id

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Duck rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: colistin

value: EUCAST

value: broth dilution

value: mg/L

value: tetracycline

value: ceftazidime

value: nitrofurantoin

value: cefuroxime

value: ciprofloxacin

value: moxifloxacin


text: public

text: SGP

text: Escherichia

characteristic: genus

text: Singapore

text: other (non-clinical isolate)

text: Duck rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: susceptible

value: Escherichia coli

value: norfloxacin

value: aztreonam

value: CLSI

value: disk diffusion

value: piperacillin

value: amoxicillin-clavulanic acid

value: gentamicin

value: ceftriaxone

value: chloramphenicol

value: resistant


text: public

text: SGP

text: Escherichia

text: Singapore

characteristic: geographic location (country and/or sea)

text: other (non-clinical isolate)

text: Soy-sauced chicken drumsticks

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: trimethoprim

value: broth dilution

value: mg/L

value: amikacin

value: EUCAST

value: tigecycline

value: trimethoprim-sulfamethoxazole

value: fosfomycin

value: tobramycin


text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

characteristic: host

text: Chicken nasi briyani

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: ciprofloxacin

value: susceptible

value: Escherichia coli

value: CLSI

value: piperacillin-tazobactam

value: cefepime

value: ertapenem

value: tetracycline

value: nalidixic acid

value: ampicillin

value: cefotaxime


text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

characteristic: isolate

text: Duck rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: disk diffusion

value: amikacin

value: broth dilution

value: mg/L

value: nitrofurantoin

value: cefoxitin

value: cefuroxime

value: gentamicin

value: imipenem

value: colistin

value: resistant

value: chloramphenicol


text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Chicken nasi briyani

text: Escherichia coli

characteristic: receipt date

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: CLSI

value: susceptible

value: Escherichia coli

value: EUCAST

value: amoxicillin-clavulanic acid

value: levofloxacin

value: ceftazidime

value: ertapenem

value: norfloxacin

value: meropenem


text: public

text: SGP

text: Escherichia

text: Singapore

text: Chicken wing

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: trimethoprim-sulfamethoxazole

value: broth dilution

value: mg/L

value: tetracycline

value: disk diffusion

value: cefotaxime

value: tigecycline

value: nalidixic acid

value: aztreonam

value: ceftriaxone


characteristic: ENA-CHECKLIST

text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Chicken kebab

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: ciprofloxacin

value: EUCAST

value: susceptible

value: Escherichia coli

value: gentamicin

value: ampicillin-sulbactam

value: chloramphenicol

value: CLSI

value: amikacin

value: resistant

value: tobramycin

value: intermediate

value: colistin

value: ampicillin


characteristic: ENA-LAST-UPDATE

text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Chicken rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: broth dilution

value: mg/L

value: nitrofurantoin

value: cefuroxime

value: levofloxacin

value: trimethoprim-sulfamethoxazole

value: disk diffusion

value: amoxicillin-clavulanic acid

value: piperacillin

value: trimethoprim

value: cefepime

value: imipenem


characteristic: External Id

text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Duck rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: chloramphenicol

value: EUCAST

value: resistant

value: Escherichia coli

value: susceptible

value: gentamicin

value: CLSI

value: tetracycline

value: cefotaxime

value: aztreonam


characteristic: INSDC center name

text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Chicken rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: cefoxitin

value: broth dilution

value: mg/L

value: trimethoprim-sulfamethoxazole

value: meropenem

value: nalidixic acid

value: intermediate

value: ofloxacin

value: ciprofloxacin

value: tobramycin

value: ertapenem

value: colistin

value: levofloxacin

value: fosfomycin


characteristic: INSDC first public

text: public

text: SGP

text: Escherichia

text: Singapore

text: other (non-clinical isolate)

text: Chicken rice

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli from ready-to-eat food

value: tigecycline

value: EUCAST

value: susceptible

value: Escherichia coli

value: chloramphenicol

value: CLSI

value: disk diffusion

value: piperacillin

value: trimethoprim

value: amikacin

value: gentamicin

value: cefuroxime

value: ampicillin-sulbactam

value: amoxicillin-clavulanic acid


text: IPK-Gatersleben

characteristic: INSDC last update

text: public

text: Crocus cartwrightianus

characteristic: common name

text: Crocus cartwrightianus

characteristic: description

text: Crocus cartwrightianus

text: Crocus cartwrightianus

characteristic: strain

text: genotyping-by-sequecing C.sativus group


characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Crocus oreocreticus

text: Crocus oreocreticus

text: Crocus oreocreticus

text: Crocus oreocreticus

text: genotyping-by-sequecing C.sativus group

characteristic: title


text: IPK-Gatersleben

text: public

characteristic: Submitter Id

text: Crocus hadriaticus

text: Crocus hadriaticus

text: Crocus hadriaticus

text: Crocus hadriaticus

text: genotyping-by-sequecing C.sativus group


text: IPK-Gatersleben

text: public

text: Crocus sativus

text: Crocus sativus

text: Crocus sativus

text: Crocus sativus

text: genotyping-by-sequecing C.sativus group


text: public

tag: Namespace:Center for Hematology and Regenerative Medicine

text: human

text: Homo sapiens

text: Homo sapiens


text: Center for Hematology and Regenerative Medicine

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: EJM.RNAseq


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: EJM.Input


text: wild isolate

characteristic: ArrayExpress-PHENOTYPE

text: hermaphrodite

characteristic: ArrayExpress-SEX

text: Caenorhabditis elegans

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Caenorhabditis elegans

text: Hermaphrodite

characteristic: gender

text: Caenorhabditis elegans

text: wild isolate

characteristic: phenotype

text: Caenorhabditis elegans

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vaiomer

characteristic: INSDC center name

text: public

text: house mouse

text: Mouse Fe-4 injected with Exendin-4

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Feces

characteristic: tissue

text: Mouse Fe-4 injected with Exendin-4


characteristic: ENA-FIRST-PUBLIC

text: Vaiomer

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: house mouse

characteristic: common name

text: Mouse Fe-6 injected with Exendin-4

characteristic: description

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-6 injected with Exendin-4


text: Vaiomer

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mouse Fe-8 injected with Exendin-4

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-8 injected with Exendin-4

characteristic: title


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-15 injected with Exendin-4

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-15 injected with Exendin-4


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-17 injected with Exendin-4

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-17 injected with Exendin-4


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-21 injected with Exendin-4

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-21 injected with Exendin-4


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-22 injected with Exendin-4

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-22 injected with Exendin-4


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-24 injected with Exendin-4

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-24 injected with Exendin-4


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-1 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-1 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-9 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-9 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-10 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-10 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-12 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-12 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-14 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-14 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-16 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-16 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-20 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-20 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-23 injected with Liraglutide

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-23 injected with Liraglutide


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-2 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-2 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-3 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-3 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-5 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-5 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-7 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-7 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-11 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-11 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-13 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-13 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-18 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-18 injected with PBS


text: Vaiomer

text: public

text: house mouse

text: Mouse Fe-19 injected with PBS

text: Mus musculus

text: Mus musculus

text: Feces

text: Mouse Fe-19 injected with PBS


text: ROBERT KOCH INSTITUT

text: public

tag: Namespace:ROBERT KOCH INSTITUT

characteristic: collection date

text: isolate obtained from a human listeriosis case in Germany

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: human listeriosis

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes

text: IVb

characteristic: serovar

text: clinical isolate of L. monocytogenes

characteristic: strain

text: clinical isolate of L. monocytogenes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ROBERT KOCH INSTITUT

characteristic: INSDC center name

text: public

text: isolate obtained from a food sample

text: Germany

text: Listeria monocytogenes

text: food

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: IVb

text: food isolate of. L. monocytogenes

text: food isolate of. L. monocytogenes


text: UNIVERSITY OF BASEL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BASEL

text: sample from before treatment, timepoint 0

characteristic: description

text: Daphnia magna

text: Daphnia magna


text: UNIVERSITY OF BASEL

text: public

characteristic: Submitter Id

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t1.0

characteristic: title


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t2.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t3.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t4.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t5.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t6.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t7.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t8.0


text: UNIVERSITY OF BASEL

text: public

text: fed animal

text: Daphnia magna

text: Daphnia magna

text: fed, t9.0


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t0.5


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t1.0


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t1.5


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t2.0


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t2.5


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t3.0


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t3.5


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t4.0


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t4.5


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t5.0


text: UNIVERSITY OF BASEL

text: public

text: starving animal

text: Daphnia magna

text: Daphnia magna

text: starving, t5.5


text: UNIVERSITY OF BASEL

text: public

text: dead animal, timepoint relative to point of death (dt)

text: Daphnia magna

text: Daphnia magna

text: dead, dt0.0


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt0.5


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt1.0


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt1.5


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt2.0


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt2.5


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt3.0


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt3.5


text: UNIVERSITY OF BASEL

text: public

text: Daphnia magna

text: Daphnia magna

text: dead, dt4.0


text: UNIVERSITY OF BASEL

text: public

text: extraction blank

text: Daphnia magna

text: Daphnia magna

text: control


text: UNIVERSITY OF BASEL

text: public

text: pcr blank

text: Daphnia magna

text: Daphnia magna

text: control


text: UNIVERSITY OF BASEL

text: public

text: mock sample, consisting of five cultured bacterial species identified through Sanger sequencing

text: Daphnia magna

text: Daphnia magna

text: control


text: UNIVERSITY OF BASEL

text: public

text: mock sample, consisting of 76 cultured bacterial isolates of unknown genetic diversity

text: Daphnia magna

text: Daphnia magna

text: control


E-MTAB-6778:Sample 4

text: public

text: E-MTAB-6778:Sample 4

tag: Namespace:Department of Allergy and Rheumatology, Graduate School of Medicine, The University of Tokyo

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD4-positive helper T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The full-length mRNA of mouse Klf1(NM-010635) was cloned into the pMIG retroviral vector, which contains an IRES-GFP cassette. Splenocytes from C57BL/6 mice were cultured for 48 h in the presence of Concanavalin A (ConA) (10 μg/mL) and IL-2 (50 μg/mL), and gene transduction was conducted. CD4+ T cells that were transfected with retroviral vectors were divided into 3 fractions according to GFP fluorescence (strongly positive, weakly positive and negative) using a FACSVantage flow cytometer. Total RNA was extracted using ｍRNA extraction kit(RNeasy Micro Kit, QIAGEN) Sequence libraries were prepared according to standard methods using Smart-seq2 (Illumina)

text: normal

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Klf1 overexpression; high GFP expression

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: Sample 4


E-MTAB-6778:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Allergy and Rheumatology, Graduate School of Medicine, The University of Tokyo

characteristic: INSDC center name

text: public

text: E-MTAB-6778:Sample 10

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Mus musculus

text: female

characteristic: strain

text: Sample 10


E-MTAB-6778:Sample 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6778:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

characteristic: description

text: normal

text: Mus musculus

text: Mus musculus

text: spleen

text: Klf1 overexpression; low GFP expression

text: Mus musculus

text: female

text: Sample 5

characteristic: title


E-MTAB-6778:Sample 11

text: public

text: E-MTAB-6778:Sample 11

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD4-positive helper T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: normal

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: Klf1 overexpression; low GFP expression

text: Mus musculus

text: female

text: Sample 11


E-MTAB-6778:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6778:Sample 12

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

text: Mus musculus

text: Mus musculus

text: spleen

text: Klf1 overexpression; no GFP expression

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: Sample 12


E-MTAB-6778:Sample 6

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6778:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: Klf1 overexpression; no GFP expression

text: Mus musculus

text: female

characteristic: strain

text: Sample 6


E-MTAB-6778:Sample 1

text: public

text: E-MTAB-6778:Sample 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD4-positive helper T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: Mus musculus

text: Mus musculus

text: spleen

text: empty vector; high GFP expression

text: Mus musculus

text: female

text: Sample 1

characteristic: title


E-MTAB-6778:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6778:Sample 7

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: empty vector; high GFP expression

text: Mus musculus

text: female

text: Sample 7


E-MTAB-6778:Sample 2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6778:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

text: Mus musculus

text: Mus musculus

text: spleen

text: empty vector; low GFP expression

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: Sample 2


E-MTAB-6778:Sample 8

text: public

text: E-MTAB-6778:Sample 8

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD4-positive helper T cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: empty vector; low GFP expression

text: Mus musculus

text: female

characteristic: strain

text: Sample 8


E-MTAB-6778:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6778:Sample 3

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

characteristic: disease

text: Mus musculus

text: Mus musculus

text: spleen

text: empty vector; no GFP expression

text: Mus musculus

text: female

text: Sample 3

characteristic: title


E-MTAB-6778:Sample 9

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6778:Sample 9

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive helper T cell

text: house mouse

text: normal

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: empty vector; no GFP expression

text: Mus musculus

text: female

text: Sample 9


text: JUSTUS LIEBIG UNIVERSITAT

text: public

tag: Namespace:JUSTUS LIEBIG UNIVERSITAT

text: ESBL-producing Enterobacteriaceae from Ghana, isolated from chicken and humans

characteristic: description

text: Ghana

characteristic: geographic location (country and/or sea)

text: human

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: Ghana

text: human

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: ESBL-producing Enterobacteriaceae from Ghana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: JUSTUS LIEBIG UNIVERSITAT

text: public

text: Ghana

text: chicken

text: Escherichia coli

text: Escherichia coli


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Dept of Forest Mycology and Plant Pathology

characteristic: collection date

text: Mountainous beech forest; Beech forest; Hemiboreal, nemoral, coniferous, mixed broadleaved_�� coniferous forest; Boreal forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: needles

characteristic: environment (material)

text: Finland

text: 62.6� N, 29.9� E

characteristic: geographic location (latitude)

text: 62.6� N, 29.9� E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: fungus metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Fungal microbiome of spruce needles

characteristic: project name

text: fungus metagenome

text: pyrosequencing

characteristic: sequencing method

text: Foliar fungal communities of Norway spruce


text: Dept of Forest Mycology and Plant Pathology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: forest

text: needles

text: Finland

characteristic: geographic location (country and/or sea)

text: 62.6� N, 29.9� E

text: 62.6� N, 29.9� E

text: metagenome

text: fungus metagenome

text: plant-associated

text: Fungal microbiome of spruce needles

text: fungus metagenome

text: pyrosequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: collection date

text: forest

text: needles

text: Germany

text: 51.1� N, 10.5� E

text: 51.1� N, 10.5� E

text: metagenome

text: fungus metagenome

characteristic: organism

text: plant-associated

text: Fungal microbiome of spruce needles

text: fungus metagenome

text: pyrosequencing


text: public

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: needles

characteristic: environment (material)

text: Romania

text: 47.3� N, 26.0� E

characteristic: geographic location (latitude)

text: 47.3� N, 26.0� E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: fungus metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Fungal microbiome of spruce needles

text: fungus metagenome

text: pyrosequencing


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: forest

text: needles

text: Poland

text: 52.7� N, 23.9� E

text: 52.7� N, 23.9� E

text: metagenome

text: fungus metagenome

text: plant-associated

text: Fungal microbiome of spruce needles

characteristic: project name

text: fungus metagenome

text: pyrosequencing

characteristic: sequencing method


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id

characteristic: title


Lang-F

text: ED

text: public

text: Lang-F

characteristic: collection date

text: roach minnow

text: Rutilus rutilus

characteristic: organism

text: Rutilus rutilus

text: female

characteristic: sex

text: fin

characteristic: tissue type

text: RADseq library


Lang-M

text: ED

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Lang-M

text: roach minnow

text: Rutilus rutilus

text: Rutilus rutilus

text: male

text: fin

text: RADseq library


York-F

text: ED

text: public

text: York-F

characteristic: Submitter Id

text: roach minnow

text: Rutilus rutilus

text: Rutilus rutilus

text: female

text: fin

text: RADseq library


York-M

characteristic: ENA-CHECKLIST

text: ED

text: public

text: York-M

text: roach minnow

text: Rutilus rutilus

text: Rutilus rutilus

text: male

text: fin

text: RADseq library


text: synthetic construct

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: synthetic construct

text: synthetic construct

text: synthetic construct


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Unilever

text: public

characteristic: description

text: metagenome

text: metagenome


text: GSC

characteristic: INSDC center name

text: public

characteristic: clone

text: Musa schizocarpa

text: Musa schizocarpa


text: EESC/USP

text: public

characteristic: collection date

text: denitrifying microorganisms were adapted and enriched to the synthetic substrate with the addition of ethanol and nitrate. TDH: 8 hours

text: bioreactor

characteristic: environment (biome)

text: denitrifying bioreactor

characteristic: environment (feature)

text: biomass attached in the support material

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: denitrifying bioreactor treating laundry wastewater

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EESC/USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: denitrifying microorganisms were adapted and enriched to the synthetic substrate with the addition of ethanol and nitrate. TDH: 12 hours

text: bioreactor

text: denitrifying bioreactor

text: Brazil

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: wastewater/sludge


characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

text: public

characteristic: collection date

text: synthetic substrate with the addition of ethanol, nitrate and laundry wastewater. TDH: 8 hours

characteristic: description

text: bioreactor

characteristic: environment (biome)

text: denitrifying bioreactor

characteristic: environment (feature)

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: EESC/USP

text: public

text: synthetic substrate with the addition of ethanol, nitrate and laundry wastewater. TDH: 12 hours

text: bioreactor

text: denitrifying bioreactor

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EESC/USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: synthetic substrate with the addition of ethanol, nitrate reduced and laundry wastewater.TDH: 8 hours

text: bioreactor

text: denitrifying bioreactor

text: Brazil

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: wastewater/sludge


characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

text: public

characteristic: collection date

text: synthetic substrate with the addition of ethanol, nitrate reduced and laundry wastewater.TDH: 12 hours

characteristic: description

text: bioreactor

characteristic: environment (biome)

text: denitrifying bioreactor

characteristic: environment (feature)

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: EESC/USP

text: public

text: nitrate and laundry wastewater.TDH: 8 hours

text: bioreactor

text: denitrifying bioreactor

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EESC/USP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: nitrate and laundry wastewater. TDH: 12 hours

text: bioreactor

text: denitrifying bioreactor

text: Brazil

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina

text: wastewater/sludge


characteristic: External Id

text: EESC/USP

characteristic: INSDC center name

text: public

characteristic: collection date

text: ethanol and laundry wastewater. TDH: 8 hours

characteristic: description

text: bioreactor

characteristic: environment (biome)

text: denitrifying bioreactor

characteristic: environment (feature)

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: metagenome

text: Illumina

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: EESC/USP

text: public

text: ethanol and laundry wastewater TDH: 12 hours

text: bioreactor

text: denitrifying bioreactor

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

characteristic: title

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


Iron-oxidizing bioreactor

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: VTT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Iron-oxidizing bioreactor

characteristic: Submitter Id

text: Bacterial community in the effluent from an iron-oxidizing bioreactor, Tampere, Finland.

text: uncultured bacterium

characteristic: organism

text: uncultured bacterium

text: Lixiviant


characteristic: External Id

text: VTT

characteristic: INSDC center name

text: public

unit: mg/L

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: Bacterial community in saline water pond from the Rudna mine, Poland.

characteristic: description

text: mine water

characteristic: environment (biome)

text: pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

characteristic: geographic location (altitude)

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: Polkowice

characteristic: geographic location (region and locality)

text: mimarks-survey

text: uncultured bacterium

text: CCTACGGGNGGCWGCAG, GACTACHVGGGTATCTAATCC

characteristic: pcr primers

characteristic: ph

text: BiomoreII

unit: mL

characteristic: sample volume or weight for DNA extraction

text: uncultured bacterium

text: Iontorrent

unit: ºC

characteristic: temperature

text: Rudna mine water

text: water

characteristic: water environmental package


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id

characteristic: title


text: public

tag: Namespace:CENTRE FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF DENMARK

text: human

text: Homo sapiens

text: Homo sapiens

text: The First Horse Herders and the Impact of Early Bronze Age Steppe Expansions into Asia


text: CENTRE FOR GEOGENETICS, NATURAL HISTORY MUSEUM OF DENMARK

text: public

text: human

text: Homo sapiens

text: Homo sapiens


Sidelkino

text: public

text: Sidelkino

text: human

text: Homo sapiens

text: Homo sapiens


Yamnaya

text: public

text: Yamnaya

text: human

text: Homo sapiens

text: Homo sapiens


E-MTAB-6762:Sample 1

text: public

text: E-MTAB-6762:Sample 1

tag: Namespace:Senior Investigator Andes Biotechnologies SpA Fundacion Ciencia & Vida

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mammary epithelial cell

characteristic: cell type

text: human

text: Protocols: 50,000 MDA-MB-231 cells per well seeded into 12-well plates and transfected the next day with ASO-1537S using lipofectamine2000 for 24 hours. Total RNA was purified with TriZOL and RNA quality was assessed using an Agilent RNA 6000 Nano chip and only samples with a RIN value >7 were used. Small RNA libraries were prepared using the TruSeq Stranded Small RNA Library Prep Kit (Illumina).

characteristic: description

text: breast adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-6762:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Senior Investigator Andes Biotechnologies SpA Fundacion Ciencia & Vida

text: public

text: E-MTAB-6762:Sample 2

text: ArrayExpress

text: mammary epithelial cell

text: human

text: Protocols: 50,000 MDA-MB-231 cells per well seeded into 12-well plates and transfected the next day with ASO-C using lipofectamine2000 for 24 hours. Total RNA was purified with TriZOL and RNA quality was assessed using an Agilent RNA 6000 Nano chip and only samples with a RIN value >7 were used. Small RNA libraries were prepared using the TruSeq Stranded Small RNA Library Prep Kit (Illumina).

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 2


E-MTAB-6762:Sample 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6762:Sample 3

text: ArrayExpress

text: mammary epithelial cell

text: human

text: Protocols: 50,000 MDA-MB-231 cells per well seeded into 12-well plates and left untreated for 24 hours. Total RNA was purified with TriZOL and RNA quality was assessed using an Agilent RNA 6000 Nano chip and only samples with a RIN value >7 were used. Small RNA libraries were prepared using the TruSeq Stranded Small RNA Library Prep Kit (Illumina).

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 3


E-MTAB-6768:Sample 1

text: public

characteristic: SRA accession

text: E-MTAB-6768:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: mammary epithelial cell

text: human

characteristic: common name

text: Protocols: 50,000 MDA-MB-231 cells per well seeded into 12-well plates and transfected the next day with ASO-1537S using lipofectamine2000, for 24 hours. Total RNA was purified with TriZOL and RNA quality was assessed using an Agilent RNA 6000 Nano chip and only samples with a RIN value >7 were used. Small RNA libraries were prepared using the NEBNext multiplex small RNA kit (New England Biolabs), following standard manufacturer's protocols.

text: breast adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 1


E-MTAB-6768:Sample 2

text: public

text: E-MTAB-6768:Sample 2

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mammary epithelial cell

text: human

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-6768:Sample 3

text: public

text: E-MTAB-6768:Sample 3

text: ArrayExpress

text: mammary epithelial cell

characteristic: cell type

text: human

characteristic: description

text: breast adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 3


E-MTAB-6768:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6768:Sample 4

text: ArrayExpress

text: mammary epithelial cell

text: human

text: Protocols: 50,000 MDA-MB-231 cells per well seeded into 12-well plates and transfected the next day with ASO-C using lipofectamine2000 for 24 hours. Total RNA was purified with TriZOL and RNA quality was assessed using an Agilent RNA 6000 Nano chip and only samples with a RIN value >7 were used. Small RNA libraries were prepared using the NEBNext multiplex small RNA kit (New England Biolabs), following standard manufacturer's protocols.

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens

text: Sample 4


E-MTAB-6768:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6768:Sample 5

text: ArrayExpress

text: mammary epithelial cell

text: human

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 5


E-MTAB-6768:Sample 6

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6768:Sample 6

text: ArrayExpress

text: mammary epithelial cell

text: human

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 6


E-MTAB-6768:Sample 7

text: public

characteristic: SRA accession

text: E-MTAB-6768:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: mammary epithelial cell

text: human

characteristic: common name

text: Protocols: 50,000 MDA-MB-231 cells per well seeded into 12-well plates and left untreated for 24 hours. Total RNA was purified with TriZOL and RNA quality was assessed using an Agilent RNA 6000 Nano chip and only samples with a RIN value >7 were used. Small RNA libraries were prepared using the NEBNext multiplex small RNA kit (New England Biolabs), following standard manufacturer's protocols.

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 7


E-MTAB-6768:Sample 8

text: public

text: E-MTAB-6768:Sample 8

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: mammary epithelial cell

text: human

text: breast adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 8


E-MTAB-6768:Sample 9

text: public

text: E-MTAB-6768:Sample 9

text: ArrayExpress

text: mammary epithelial cell

characteristic: cell type

text: human

characteristic: description

text: breast adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens

text: Sample 9

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Lab of stem cell and tissue regeneration, College of life sciences and biotechnology, Korea university

text: ArrayExpress

text: myoblast

text: house mouse

text: Protocols: Control and Flag-tagged TAZ-expressing C2C12 myoblasts were seeded and incubated for 24h in growing media (20% FBS-containing DMEM). Then cells were treated with 0.75% formaldehyde to cross-link proteins to DNA and quenched by 125 nM glycine. After rinse with PBS, cells were harvested and sonicated in RIPA buffer supplemented with protease inhibitor cocktail for chromatin fragmentation. After checking the fragment size by gel electrophoresis, chromatin samples were used for ChIP. Chromatin samples were immunoprecipitated with FLAG antibody-conjugated beads (Sigma, A2220). After washing, captured complexes were eluted and reverse cross-linking was performed to release DNA from protein-DNA complexes. Then, eluted DNA was purified by using DNA purification kit (Thermo scientific, K0832). Library preparation was performed with Illumina TruSeq ChIP sample preparation kit according to the manufacturer's instructions. Simply, After clean up of immunoprecipitated DNA using sample purification bead, the DNA was end-repaired at 30 °C for 30 min. A single ‘A’ nucleotide was added to the 3’ ends of the blunt fragments using a-tailing mix reagent by incubation at 37 °C for 30 min, and then at 70 °C for 5 min. Indexing adapters were ligated to the ends of the DNA fragments using ligation mix 2 reagent at 30 °C for 10 min, followed by a gel size-selection for 250-350 bp of insert size. PCR was performed to enrich those DNA fragments that have adapter molecules on both ends. Thermocycler conditions were as follows: 98°C for 30 s, 18 cycles of 98°C for 10 s, 60°C for 30 s, and 72°C for 30 min, with a final extension at 72°C for 5 min. Finally, quality and band size of libraries were assessed using Agilent 2100 bioanalyzer (Agilent). Libraries were quantified by qPCR using CFX96 Real Time System (Biorad).

text: normal

characteristic: disease

text: pBabe puro vector

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: muscle

text: empty vector

characteristic: phenotype

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lab of stem cell and tissue regeneration, College of life sciences and biotechnology, Korea university

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: myoblast

text: house mouse

text: normal

text: pBp-mTAZ-FLAG

text: Mus musculus

text: Mus musculus

text: muscle

characteristic: organism part

text: mTAZ overexpression

text: Mus musculus


text: CBMSO

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: T2.30D-1.1 is a Rhizobium strain that have been isolated from the deep subsurface of the Iberian Pyrite Belt (SW Spain) in strict anaerobic conditions. The sample was taken from a drill core obtained at 538.5 meters below surface, during the Iberian Pyrite Belt Subsurface Life Detection project (IPBSL). It was isolated from a denitrifying enrichment culture respectively in a H2:CO2 (80:20) atmosphere. A genome and one plasmid were sequenced.

text: Rhizobium selenitireducens ATCC BAA-1503

text: Rhizobium sp. strain T2.30D-1.1 IPBSL


text: brain

text: male

characteristic: ArrayExpress-SEX

text: Chaenocephalus aceratus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: blackfin icefish

characteristic: common name

text: Male

characteristic: gender

text: Chaenocephalus aceratus

characteristic: organism

text: Chaenocephalus aceratus

characteristic: subject id


text: gonads

text: male

text: Chaenocephalus aceratus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: blackfin icefish

text: Male

text: Chaenocephalus aceratus

text: Chaenocephalus aceratus

characteristic: title


text: muscle

text: male

text: Chaenocephalus aceratus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: blackfin icefish

text: Male

text: Chaenocephalus aceratus

text: Chaenocephalus aceratus


text: brain

text: female

text: Chaenocephalus aceratus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: blackfin icefish

text: Female

text: Chaenocephalus aceratus

text: Chaenocephalus aceratus


text: gonads

text: female

text: Chaenocephalus aceratus

text: SC

characteristic: INSDC last update

text: public

text: blackfin icefish

text: Female

text: Chaenocephalus aceratus

text: Chaenocephalus aceratus


text: muscle

text: female

text: Chaenocephalus aceratus

text: SC

text: public

characteristic: INSDC status

text: blackfin icefish

text: Female

text: Chaenocephalus aceratus

text: Chaenocephalus aceratus


text: brain

text: male

text: Champsocephalus gunnari

text: SC

text: public

characteristic: SRA accession

text: mackerel icefish

text: Male

text: Champsocephalus gunnari

text: Champsocephalus gunnari


text: gonads

text: male

text: Champsocephalus gunnari

text: SC

text: public

characteristic: Submitter Id

text: mackerel icefish

text: Male

text: Champsocephalus gunnari

text: Champsocephalus gunnari


text: muscle

text: male

characteristic: ArrayExpress-SEX

text: Champsocephalus gunnari

text: SC

text: public

text: mackerel icefish

text: Male

text: Champsocephalus gunnari

text: Champsocephalus gunnari


text: gonads

text: male

text: Chaenodraco wilsoni

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Chaenodraco wilsoni

text: Male

text: Chaenodraco wilsoni

text: Chaenodraco wilsoni


text: brain

text: male

text: Chionodraco rastrospinosus

text: SC

text: public

text: ocellated icefish

characteristic: common name

text: Male

text: Chionodraco rastrospinosus

text: Chionodraco rastrospinosus


text: gonads

text: male

text: Chionodraco rastrospinosus

text: SC

text: public

text: ocellated icefish

text: Male

characteristic: gender

text: Chionodraco rastrospinosus

text: Chionodraco rastrospinosus


text: muscle

text: male

text: Chionodraco rastrospinosus

text: SC

text: public

text: ocellated icefish

text: Male

text: Chionodraco rastrospinosus

characteristic: organism

text: Chionodraco rastrospinosus


text: gonads

text: female

text: Chionodraco rastrospinosus

text: SC

text: public

text: ocellated icefish

text: Female

text: Chionodraco rastrospinosus

text: Chionodraco rastrospinosus

characteristic: subject id


text: brain

text: male

text: Gobionotothen gibberifrons

characteristic: ENA-CHECKLIST

text: SC

text: public

text: humped rockcod

text: Male

text: Gobionotothen gibberifrons

text: Gobionotothen gibberifrons


text: gonads

text: male

text: Gobionotothen gibberifrons

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: humped rockcod

text: Male

text: Gobionotothen gibberifrons

text: Gobionotothen gibberifrons


text: muscle

text: male

text: Gobionotothen gibberifrons

text: SC

text: public

text: humped rockcod

text: Male

text: Gobionotothen gibberifrons

text: Gobionotothen gibberifrons

characteristic: title


text: brain

text: female

text: Gobionotothen gibberifrons

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: humped rockcod

text: Female

text: Gobionotothen gibberifrons

text: Gobionotothen gibberifrons


text: gonads

text: female

text: Gobionotothen gibberifrons

characteristic: External Id

text: SC

text: public

text: humped rockcod

text: Female

text: Gobionotothen gibberifrons

text: Gobionotothen gibberifrons


text: muscle

text: female

text: Gobionotothen gibberifrons

text: SC

characteristic: INSDC center name

text: public

text: humped rockcod

text: Female

text: Gobionotothen gibberifrons

text: Gobionotothen gibberifrons


text: brain

text: male

text: Lepidonotothen larseni

text: SC

characteristic: INSDC first public

text: public

text: painted notie

text: Male

text: Lepidonotothen larseni

text: Lepidonotothen larseni


text: gonads

text: male

text: Lepidonotothen larseni

text: SC

characteristic: INSDC last update

text: public

text: painted notie

text: Male

text: Lepidonotothen larseni

text: Lepidonotothen larseni


text: brain

text: female

text: Trematomus scotti

text: SC

text: public

characteristic: INSDC status

text: blackfin notothen

text: Female

text: Trematomus scotti

text: Trematomus scotti


text: gonads

text: female

text: Trematomus scotti

text: SC

text: public

characteristic: SRA accession

text: blackfin notothen

text: Female

text: Trematomus scotti

text: Trematomus scotti


text: muscle

text: female

text: Trematomus scotti

text: SC

text: public

characteristic: Submitter Id

text: blackfin notothen

text: Female

text: Trematomus scotti

text: Trematomus scotti


text: gonads

text: male

characteristic: ArrayExpress-SEX

text: Trematomus scotti

text: SC

text: public

text: blackfin notothen

text: Male

text: Trematomus scotti

text: Trematomus scotti


text: brain

text: male

text: Chaenodraco wilsoni

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Chaenodraco wilsoni

text: Male

text: Chaenodraco wilsoni

text: Chaenodraco wilsoni


text: muscle

text: male

text: Lepidonotothen larseni

text: SC

text: public

text: painted notie

characteristic: common name

text: Male

text: Lepidonotothen larseni

text: Lepidonotothen larseni


text: brain

text: male

text: Lepidonotothen nudifrons

text: SC

text: public

text: yellowfin notie

text: Male

characteristic: gender

text: Lepidonotothen nudifrons

text: Lepidonotothen nudifrons


text: gonads

text: male

text: Lepidonotothen nudifrons

text: SC

text: public

text: yellowfin notie

text: Male

text: Lepidonotothen nudifrons

characteristic: organism

text: Lepidonotothen nudifrons


text: muscle

text: male

text: Lepidonotothen nudifrons

text: SC

text: public

text: yellowfin notie

text: Male

text: Lepidonotothen nudifrons

text: Lepidonotothen nudifrons

characteristic: subject id


text: gonads

text: female

text: Lepidonotothen nudifrons

characteristic: ENA-CHECKLIST

text: SC

text: public

text: yellowfin notie

text: Female

text: Lepidonotothen nudifrons

text: Lepidonotothen nudifrons


text: gonads

text: male

text: Notothenia coriiceps

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: black rockcod

text: Male

text: Notothenia coriiceps

text: Notothenia coriiceps


text: brain

text: female

text: Notothenia coriiceps

text: SC

text: public

text: black rockcod

text: Female

text: Notothenia coriiceps

text: Notothenia coriiceps

characteristic: title


text: gonads

text: female

text: Notothenia coriiceps

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: black rockcod

text: Female

text: Notothenia coriiceps

text: Notothenia coriiceps


text: muscle

text: female

text: Notothenia coriiceps

characteristic: External Id

text: SC

text: public

text: black rockcod

text: Female

text: Notothenia coriiceps

text: Notothenia coriiceps


text: brain

text: male

text: Notothenia rossii

text: SC

characteristic: INSDC center name

text: public

text: marbled rockcod

text: Male

text: Notothenia rossii

text: Notothenia rossii


text: gonads

text: male

text: Notothenia rossii

text: SC

characteristic: INSDC first public

text: public

text: marbled rockcod

text: Male

text: Notothenia rossii

text: Notothenia rossii


text: muscle

text: male

text: Notothenia rossii

text: SC

characteristic: INSDC last update

text: public

text: marbled rockcod

text: Male

text: Notothenia rossii

text: Notothenia rossii


text: brain

text: female

text: Notothenia rossii

text: SC

text: public

characteristic: INSDC status

text: marbled rockcod

text: Female

text: Notothenia rossii

text: Notothenia rossii


text: gonads

text: female

text: Notothenia rossii

text: SC

text: public

characteristic: SRA accession

text: marbled rockcod

text: Female

text: Notothenia rossii

text: Notothenia rossii


text: muscle

text: female

text: Notothenia rossii

text: SC

text: public

characteristic: Submitter Id

text: marbled rockcod

text: Female

text: Notothenia rossii

text: Notothenia rossii


text: brain

text: female

characteristic: ArrayExpress-SEX

text: Trematomus hansoni

text: SC

text: public

text: striped rockcod

text: Female

text: Trematomus hansoni

text: Trematomus hansoni


text: gonads

text: female

text: Trematomus hansoni

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: striped rockcod

text: Female

text: Trematomus hansoni

text: Trematomus hansoni


text: muscle

text: female

text: Trematomus hansoni

text: SC

text: public

text: striped rockcod

characteristic: common name

text: Female

text: Trematomus hansoni

text: Trematomus hansoni


text: brain

text: female

text: Trematomus loennbergii

text: SC

text: public

text: deepwater notothen

text: Female

characteristic: gender

text: Trematomus loennbergii

text: Trematomus loennbergii


text: gonads

text: female

text: Trematomus loennbergii

text: SC

text: public

text: deepwater notothen

text: Female

text: Trematomus loennbergii

characteristic: organism

text: Trematomus loennbergii


text: muscle

text: female

text: Trematomus loennbergii

text: SC

text: public

text: deepwater notothen

text: Female

text: Trematomus loennbergii

text: Trematomus loennbergii

characteristic: subject id


text: gonads

text: male

text: Trematomus loennbergii

characteristic: ENA-CHECKLIST

text: SC

text: public

text: deepwater notothen

text: Male

text: Trematomus loennbergii

text: Trematomus loennbergii


characteristic: ENA-FIRST-PUBLIC

text: CBMSO

text: public

text: T2.26MG-112.2 is a Rhizobium strain that has been isolated from the deep subsurface of the Iberian Pyrite Belt (SW Spain) in strict anaerobic conditions. The sample was taken from a drill core obtained at 492.6 meters below surface, during the Iberian Pyrite Belt Subsurface Life Detection project (IPBSL). It was isolated from a methanogenic enrichment culture in a H2:CO2 (80:20) atmosphere. A genome and one plasmid were sequenced

characteristic: description

text: Rhizobium naphthalenivorans

text: Rhizobium naphthalenivorans

text: Rhizobium sp. strain T2.26MG-112.2 IPBSL


text: Streptococcus agalactiae

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: title


characteristic: External Id

text: UCD Conway Institute

characteristic: INSDC center name

text: public

tag: Namespace:UCD Conway Institute

text: Zygosaccharomyces pseudobailii strain MT15

text: China

characteristic: geographic location (country and/or sea)

text: Maotai liquor fermentation

characteristic: isolation source

text: Zygosaccharomyces pseudobailii

text: Zygosaccharomyces pseudobailii


text: UCSF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: human

text: 16S rRNA(V1-V3) profiling of skin microbial communities in psoriasis skin compare to healthy skin

text: skin

characteristic: environment (biome)

text: Arm

characteristic: environment (feature)

text: skin swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Healthy

characteristic: host phenotype

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

text: Profiling cutaneous microbiome community by 16S rRNA (V1-V3) in psoriasis patients

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq PE300

characteristic: sequencing method

text: Psoriasis associated skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: skin

text: Arm

text: skin swab

text: USA

characteristic: geographic location (country and/or sea)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina MiSeq PE301

text: Psoriasis associated skin microbiome

characteristic: title


text: UCSF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: human

text: skin

characteristic: environment (biome)

text: Arm

characteristic: environment (feature)

text: skin swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

text: Homo sapiens

text: Illumina MiSeq PE302

text: Psoriasis associated skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

characteristic: INSDC center name

text: public

text: human

text: skin

text: Arm

text: skin swab

text: USA

text: Healthy

characteristic: host phenotype

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq PE303

characteristic: sequencing method

text: Psoriasis associated skin microbiome


text: UCSF

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: skin

text: Arm

text: skin swab

text: USA

characteristic: geographic location (country and/or sea)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina MiSeq PE304

text: Psoriasis associated skin microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: collection date

text: human

text: skin

characteristic: environment (biome)

text: Arm

characteristic: environment (feature)

text: skin swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

text: Homo sapiens

text: Illumina MiSeq PE305

text: Psoriasis associated skin microbiome


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: skin

text: Arm

text: skin swab

text: USA

text: Healthy

characteristic: host phenotype

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq PE306

characteristic: sequencing method

text: Psoriasis associated skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: skin

text: Arm

text: skin swab

text: USA

characteristic: geographic location (country and/or sea)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina MiSeq PE307

text: Psoriasis associated skin microbiome

characteristic: title


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: human

text: skin

characteristic: environment (biome)

text: Arm

characteristic: environment (feature)

text: skin swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

text: Homo sapiens

text: Illumina MiSeq PE308

text: Psoriasis associated skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: SRA accession

text: human

text: skin

text: Arm

text: skin swab

text: USA

text: Healthy

characteristic: host phenotype

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq PE309

characteristic: sequencing method

text: Psoriasis associated skin microbiome


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: skin

text: Arm

text: skin swab

text: USA

characteristic: geographic location (country and/or sea)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina MiSeq PE310

text: Psoriasis associated skin microbiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: collection date

text: human

text: skin

characteristic: environment (biome)

text: Arm

characteristic: environment (feature)

text: skin swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

text: Homo sapiens

text: Illumina MiSeq PE311

text: Psoriasis associated skin microbiome


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: skin

text: Arm

text: skin swab

text: USA

text: Healthy

characteristic: host phenotype

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq PE312

characteristic: sequencing method

text: Psoriasis associated skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: Submitter Id

text: human

characteristic: common name

characteristic: description

text: skin

text: Arm

text: skin swab

text: USA

characteristic: geographic location (country and/or sea)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina MiSeq PE313

text: Psoriasis associated skin microbiome

characteristic: title


text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: human

text: skin

characteristic: environment (biome)

text: Arm

characteristic: environment (feature)

text: skin swab

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Healthy

text: human-skin

text: mimarks-survey

text: Homo sapiens

text: Homo sapiens

text: Illumina MiSeq PE314

text: Psoriasis associated skin microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSF

text: public

characteristic: SRA accession

text: human

text: skin

text: Arm

text: skin swab

text: USA

text: Healthy

characteristic: host phenotype

text: human-skin

characteristic: human skin environmental package

text: mimarks-survey

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina MiSeq PE315

characteristic: sequencing method

text: Psoriasis associated skin microbiome