text: public

text: 8464:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Surface waters free living bacterial community from station 1E

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8463:4d013819-3805-4dc3-8e27-404ebd612215

tag: Namespace:Alfred Wegener Institute for Polar and Marine Research

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Surface waters particle associated bacterial community from station EG1

text: marine pelagic biome [ENVO:01000023]

text: microbial feature [ENVO:01000007]|marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

unit: m

unit: DD

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: total depth of water column

text: water

characteristic: water environmental package


text: Alfred Wegener Institute for Polar and Marine Research

text: public

text: 8462:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Surface waters free living bacterial community from station EG1

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8461:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Free living bacterial community from station 1W below the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: total depth of water column

text: water


text: public

text: 8460:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Particle associated bacterial community from station 1W below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8459:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Free living bacterial community from station 1W at the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: title

text: water


text: public

text: 8458:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Particle associated bacterial community from station 1W at the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total depth of water column

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8457:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Surface waters free living bacterial community from station 1W

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: water

characteristic: water environmental package


text: public

text: 8456:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Particle associated bacterial community from station 1E below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8455:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Surface waters particle associated bacterial community from station 1W

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: total depth of water column

text: water


text: Alfred Wegener Institute for Polar and Marine Research

text: public

text: 8454:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Particle associated bacterial community from station N4 below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

text: microbial feature [ENVO:01000007]|marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8453:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Particle associated bacterial community from station N4 at the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: title

text: water


text: public

text: 8452:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Surface waters particle associated bacterial community from station N4

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total depth of water column

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8451:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Free living bacterial community from station N4 below the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: water

characteristic: water environmental package


text: public

text: 8450:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Free living bacterial community from station N4 at the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8449:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Surface waters free living bacterial community from station N4

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: total depth of water column

text: water


text: public

text: 8448:4d013819-3805-4dc3-8e27-404ebd612215

text: GFBIO

characteristic: collection date

text: Particle associated bacterial community from station HG1 below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine metagenome

text: Illumina MiSeq

text: true

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8447:4d013819-3805-4dc3-8e27-404ebd612215

characteristic: Submitter Id

characteristic: associated eukaryotic sample

text: GFBIO

characteristic: broker name

text: Free living bacterial community from station 1E below the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine metagenome

text: ABYSS; FRAM

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

characteristic: title

text: water


text: UNIVERSITY OF COLOGNE

text: public

tag: Namespace:UNIVERSITY OF COLOGNE

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


E-MTAB-6670:Sample 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6670:Sample 1

tag: Namespace:National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples were collected to follow growth, carbon source consumption and product formation. The yeast strain was cultivated in a DasGip system, using 4 reactors per condition. The different conditions were prepared with standard approach to grow yeast in reactors. The following conditions were used: Carbon source. (g/L) Dissolved oxygen (percentage): Glucose (30) <10%; Glucose (10) + Xylose (20) <10%; Glucose (20) 30-40%; Glucose (200) 30-40%; Xylose (20) 30-40%; Xylose (200) 30-40%; Lactose (20) 30-40%; Galactose (20) 30-40%; Cellobiose (20) 30-40% TRIzol (also known as TRI REAGENT) for the isolation of total RNA. TRIzol is a mixture of guanidine thioacyanate and phenol, which effectively dissolves DNA, RNA and protein on homogenization or lysis of tissue sample. After adding chloroform and centrifuging, the mixture separates into 3 phases with the upper clear aqueous phase containing the RNA. The next steps include transfer of the clear upper phase to 1 volume of absolute ethanol, and then transfer the mixture to an RNeasy column, following the kit instructions. TrueSeq

characteristic: description

text: wild type genotype

characteristic: genotype

text: cellobiose 20 grams per liter; 30 to 40 percent dissolved oxygen

characteristic: growth condition

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

characteristic: strain

text: Sample 1


E-MTAB-6670:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University

text: public

text: E-MTAB-6670:Sample 10

text: ArrayExpress

text: wild type genotype

text: glucose 200 grams per liter; 30 to 40 percent dissolved oxygen

text: [Candida] intermedia

characteristic: organism

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 10

characteristic: title


E-MTAB-6670:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6670:Sample 11

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 11


E-MTAB-6670:Sample 12

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6670:Sample 12

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 12


E-MTAB-6670:Sample 13

characteristic: INSDC last update

text: public

text: E-MTAB-6670:Sample 13

text: ArrayExpress

text: wild type genotype

text: glucose 30 grams per liter; less than 10 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 13


E-MTAB-6670:Sample 14

text: public

characteristic: INSDC status

text: E-MTAB-6670:Sample 14

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 14


E-MTAB-6670:Sample 15

text: public

characteristic: SRA accession

text: E-MTAB-6670:Sample 15

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 15


E-MTAB-6670:Sample 16

text: public

text: E-MTAB-6670:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: galactose 20 grams per liter; 30 to 40 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 16


E-MTAB-6670:Sample 17

text: public

text: E-MTAB-6670:Sample 17

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 17


E-MTAB-6670:Sample 18

text: public

text: E-MTAB-6670:Sample 18

text: ArrayExpress

characteristic: description

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 18


E-MTAB-6670:Sample 19

text: public

text: E-MTAB-6670:Sample 19

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: lactose 20 grams per liter; 30 to 40 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 19


E-MTAB-6670:Sample 2

text: public

text: E-MTAB-6670:Sample 2

text: ArrayExpress

text: wild type genotype

characteristic: growth condition

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 2


E-MTAB-6670:Sample 20

text: public

text: E-MTAB-6670:Sample 20

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

characteristic: strain

text: Sample 20


E-MTAB-6670:Sample 21

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6670:Sample 21

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 21


E-MTAB-6670:Sample 22

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6670:Sample 22

text: ArrayExpress

text: wild type genotype

text: xylose 20 grams per liter; 30 to 40 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 22


E-MTAB-6670:Sample 23

text: public

text: E-MTAB-6670:Sample 23

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

characteristic: organism

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 23


E-MTAB-6670:Sample 24

text: public

text: E-MTAB-6670:Sample 24

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 24

characteristic: title


E-MTAB-6670:Sample 25

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6670:Sample 25

text: ArrayExpress

text: wild type genotype

text: xylose 200 grams per liter; 30 to 40 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 25


E-MTAB-6670:Sample 26

characteristic: External Id

text: public

text: E-MTAB-6670:Sample 26

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 26


E-MTAB-6670:Sample 27

characteristic: INSDC center name

text: public

text: E-MTAB-6670:Sample 27

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 27


E-MTAB-6670:Sample 3

characteristic: INSDC first public

text: public

text: E-MTAB-6670:Sample 3

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 3


E-MTAB-6670:Sample 4

characteristic: INSDC last update

text: public

text: E-MTAB-6670:Sample 4

text: ArrayExpress

text: wild type genotype

text: glucose 10 grams per liter; xylose 20 grams per liter; less than 10 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 4


E-MTAB-6670:Sample 5

text: public

characteristic: INSDC status

text: E-MTAB-6670:Sample 5

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 5


E-MTAB-6670:Sample 6

text: public

characteristic: SRA accession

text: E-MTAB-6670:Sample 6

text: ArrayExpress

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 6


E-MTAB-6670:Sample 7

text: public

text: E-MTAB-6670:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: glucose 20 grams per liter; 30 to 40 percent dissolved oxygen

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 7


E-MTAB-6670:Sample 8

text: public

text: E-MTAB-6670:Sample 8

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 8


E-MTAB-6670:Sample 9

text: public

text: E-MTAB-6670:Sample 9

text: ArrayExpress

characteristic: description

text: wild type genotype

text: [Candida] intermedia

text: [Candida] intermedia

text: [Candida] intermedia

text: CBS 141442

text: Sample 9


text: URMITE

text: public

text: Cardiac valve

characteristic: isolation source

text: metagenome

text: metagenome

text: Human endocarditis


text: synthetic construct

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: synthetic construct

characteristic: common name

text: synthetic construct

text: synthetic construct

characteristic: subject id


text: Plasmodium falciparum

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: ACTREC, Tata Memorial Cancer Centre

text: public

tag: Namespace:ACTREC, Tata Memorial Cancer Centre

unit: year

characteristic: age

text: ArrayExpress

text: human

text: Protocols: A total of 27 fresh frozen samples (10 tumor-normal paired and 7 orphan tumors) were utilized for whole exome sequencing. An additional set of 27 FFPE samples were utilized as a validation set. Tumor-normal paired samples were collected at Tata Memorial Hospital and Advanced Centre for Treatment, Research and Education in Cancer (ACTREC), Mumbai. Sample set and (ACTREC-TMC) Internal Review Board (IRB) --IRB Project Number # 104-- approved study protocols. Formalin-fixed paraffin-embedded tissue blocks were collected from the tissue repository of Tata memorial hospital (TMH-TTR) in compliance with the guidelines. These tissues were examined for tumor content and the tumor content was in the range of 40-90%. Genomic DNA was extracted from fresh frozen samples by using Qiagen Blood and Cell culture DNA kit. The extracted DNA yield and quality were assessed using Nanodrop ND2000 (Thermo scientific). The extracted DNA (about 1µg) from the fresh-frozen tissue specimens were sent to Genotypic Technology Pvt Ltd, Bangalore for exome sequencing. Genomic DNA from FFPE blocks was extracted using Qiagen QiAmp DNA FFPE Tissue kit as per manufacturer instructions. The extracted DNA yield and quality were assessed using Nanodrop ND2000 (Thermo scientific). Exome capture and sequencing were performed as described previously 58. Briefly, Agilent Sure select in-solution (low-input capture-500ng) were used to capture ~62Mb region of human genome comprising of ~201,121 exons representing ~20,974 gene sequences, including 5’UTR, 3’UTR, microRNAs and other non-coding RNA.

text: Gallbladder Adenocarcinoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: gallbladder

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC, Tata Memorial Cancer Centre

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: Gallbladder Adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: neoplasm

text: Homo sapiens

text: female


text: ACTREC, Tata Memorial Cancer Centre

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: gallbladder carcinoma

text: peritoneal effusion

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ACTREC, Tata Memorial Cancer Centre

text: public

characteristic: age

text: ArrayExpress

text: human

text: gallbladder carcinoma

characteristic: disease

text: ascitic fluid

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: gallbladder

characteristic: organism part

text: Homo sapiens

text: male


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ACTREC, Tata Memorial Cancer Centre

characteristic: INSDC center name

text: public

text: ArrayExpress

text: NOZ

text: human

text: gallbladder carcinoma

text: ascitic fluid

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


text: ACTREC, Tata Memorial Cancer Centre

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not available

text: ArrayExpress

text: human

text: gallbladder carcinoma

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: Homo sapiens

text: not available


text: ACTREC, Tata Memorial Cancer Centre

text: public

text: not available

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: Undifferentiated Gallbladder Carcinoma

text: lymph node

characteristic: metastatic site

text: Homo sapiens

text: Homo sapiens

text: gallbladder

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL

text: public

text: UCL

characteristic: collecting institution

characteristic: collection date

text: Charlotte Houldcroft

characteristic: collector name

text: Adenovirus from immune compromised paediatric patients, sequenced with SureSelect target enrichment.

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Human adenovirus 41

characteristic: organism

text: active surveillance not initiated by an outbreak

characteristic: sample capture status

text: Human adenovirus 41

text: Adenovirus from clinical specimens

characteristic: virus identifier


text: body

text: Gouania willdenowi

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: blunt-snouted clingfish

characteristic: common name

text: Gouania willdenowi

text: Gouania willdenowi

characteristic: subject id

characteristic: title


text: head

text: Gouania willdenowi

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: blunt-snouted clingfish

text: Gouania willdenowi

text: Gouania willdenowi


text: organs

text: Gouania willdenowi

text: SC

text: public

text: blunt-snouted clingfish

text: Gouania willdenowi

characteristic: organism

text: Gouania willdenowi


text: body

text: Parambassis ranga

text: SC

text: public

text: Indian glassy fish

text: Parambassis ranga

text: Parambassis ranga


text: head

text: Denticeps clupeoides

text: SC

text: public

text: denticle herring

text: Denticeps clupeoides

text: Denticeps clupeoides


text: body

text: Denticeps clupeoides

text: SC

text: public

text: denticle herring

text: Denticeps clupeoides

text: Denticeps clupeoides


text: spleen

text: Cottoperca gobio

text: SC

text: public

text: Cottoperca gobio

text: Cottoperca gobio

text: Cottoperca gobio


text: liver

text: Erpetoichthys calabaricus

text: SC

text: public

text: reedfish

text: Erpetoichthys calabaricus

text: Erpetoichthys calabaricus


text: muscle

text: Mastacembelus armatus

text: SC

text: public

text: zig-zag eel

text: Mastacembelus armatus

text: Mastacembelus armatus


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Salmonella enterica

text: Salmonella enterica


text: Senckenberg BIK-F

text: public

tag: Namespace:Senckenberg BIK-F

text: 45.8616760, 4.8865000

characteristic: lat lon

text: Chironomus riparius

text: Chironomus riparius

text: Chironomus riparius individual genome data mapped to 'Laufer' draft genome (EMBL-EBI study PRJEB15223)


text: Senckenberg BIK-F

text: public

text: 50.1680610, 9.0819270

text: Chironomus riparius

text: Chironomus riparius


text: Senckenberg BIK-F

text: public

text: 49.1765430, 6.2156670

text: Chironomus riparius

text: Chironomus riparius


text: Senckenberg BIK-F

text: public

text: 45.4036180, 8.3473320

text: Chironomus riparius

text: Chironomus riparius


text: Senckenberg BIK-F

text: public

text: 37.3990800, -4.5267980

text: Chironomus riparius

text: Chironomus riparius


text: UNIVERSITY OF FLORENCE

text: public

tag: Namespace:UNIVERSITY OF FLORENCE

text: OEA-treated mice

characteristic: description

text: mouse gut metagenome

text: mouse gut metagenome


text: UNIVERSITY OF FLORENCE

text: public

text: vehicle-treated mice

text: mouse gut metagenome

text: mouse gut metagenome


PD 885

text: public

text: PD 885

tag: Namespace:Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

characteristic: collection date

text: Xf-CGr-IA

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: USA

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria chiloensis var. ananassa

characteristic: host scientific name

text: PD 885

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: III

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 885

characteristic: strain

text: Xanthomonas fragariae PD 885 (type strain)


PD 4314

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PD 4314

characteristic: Submitter Id

text: Xf-CGr-IA

text: A

text: USA

text: diseased

text: Fragaria chiloensis var. ananassa

text: PD 4314

text: diseased strawberry

text: III

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 4314

text: Xanthomonas fragariae PD 4314


PD 2659

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PD 2659

characteristic: collection date

text: Xf-CGr-IA

characteristic: crispr

text: A

text: USA

text: diseased

text: PD 2659

text: diseased strawberry

text: III

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: PD 2659

text: Xanthomonas fragariae PD 2659

characteristic: title


ICMP 659

text: public

text: ICMP 659

text: Xf-CGr-IA

text: A

characteristic: crispr spacer sequence

text: USA

characteristic: geographic location (country and/or sea)

text: Minesota

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Fragaria sp.

characteristic: host scientific name

text: ICMP 659

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: III

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 659

text: Xanthomonas fragariae ICMP 659


ICMP 661

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ICMP 661

text: Xf-CGr-IA

text: A

text: USA

text: Minesota

text: diseased

text: Fragaria sp.

text: ICMP 661

text: diseased strawberry

text: III

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 661

characteristic: strain

text: Xanthomonas fragariae ICMP 661


XF 61

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: XF 61

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IB

characteristic: crispr

text: B

text: Netherlands

text: diseased

text: Variety Figaro

text: XF 61

text: diseased strawberry

text: II

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: XF 61

text: Xanthomonas fragariae XF 61


text: public

text: Xf-CGr-IB

text: A

characteristic: crispr spacer sequence

text: Belgium

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria � ananassa

characteristic: host scientific name

text: diseased strawberry

text: II

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: Xanthomonas fragariae JVD-0051

characteristic: title


PD 2905

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PD 2905

text: Xf-CGr-IB

text: B

text: Portugal

text: diseased

text: Fragaria 'Cambridge vigour'

text: PD 2905

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: II

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 2905

text: Xanthomonas fragariae PD 2905


CFBP 4784

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CFBP 4784

text: Xf-CGr-IC

text: A

text: Portugal

text: diseased

text: Fragaria sp. Thulda.

text: CFBP 4784

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 4784

characteristic: strain

text: Xanthomonas fragariae CFBP 4784


ICMP 13779

text: public

characteristic: SRA accession

text: ICMP 13779

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: Italy

characteristic: geographic location (country and/or sea)

text: Matera

characteristic: geographic location (region and locality)

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 13779

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 13779

text: Xanthomonas fragariae ICMP 13779


ICMP 13780

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ICMP 13780

text: Xf-CGr-IC

text: B

text: Italy

text: Matera

text: diseased

characteristic: host health state

text: Fragaria � ananassa Duchesne

characteristic: host scientific name

text: ICMP 13780

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: ICMP 13780

text: Xanthomonas fragariae ICMP 13780

characteristic: title


PD 3160

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PD 3160

text: Xf-CGr-IC

text: A

text: Netherlands

text: diseased

text: PD 3170

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 3170

text: Xanthomonas fragariae PD 3170


CFBP 4785

text: public

characteristic: SRA accession

text: CFBP 4785

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: Portugal

text: diseased

text: Fragaria sp.

text: CFBP 4785

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 4785

characteristic: strain

text: Xanthomonas fragariae CFBP 4785


CFBP 4786

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: CFBP 4786

text: Xf-CGr-IC

text: C

text: Portugal

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria sp.

characteristic: host scientific name

text: CFBP 4786

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 4786

text: Xanthomonas fragariae CFBP 4786


CFBP 5253

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CFBP 5253

text: Xf-CGr-IC

text: A

text: France

text: diseased

text: Fragaria sp.

text: CFBP 5253

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: CFBP 5253

text: Xanthomonas fragariae CFBP 5253

characteristic: title


CFBP 5257

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CFBP 5257

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

text: A

text: France

text: diseased

text: Fragaria sp.

text: CFBP 5257

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 5257

text: Xanthomonas fragariae CFBP 5257


CFBP 5260

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: CFBP 5260

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: France

text: diseased

text: Fragaria sp.

text: CFBP 5260

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 5260

characteristic: strain

text: Xanthomonas fragariae CFBP 5260


PD 4634

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: PD 4634

text: Xf-CGr-IC

text: A

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria sp.

characteristic: host scientific name

text: PD 4634

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 4634

text: Xanthomonas fragariae PD 4634


PD 4932

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PD 4932

text: Xf-CGr-IC

text: A

text: Netherlands

text: diseased

text: Fragaria sp.

text: PD 4932

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: PD 4932

text: Xanthomonas fragariae PD 4932

characteristic: title


PD 5205

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: PD 5205

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

text: A

text: Netherlands

text: diseased

text: Fragaria sp.

text: PD 5205

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 5205

text: Xanthomonas fragariae PD 5205


PD 5365

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PD 5365

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: Netherlands

text: diseased

text: Fragaria sp.

text: PD 5365

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 5365

characteristic: strain

text: Xanthomonas fragariae PD 5365


PD 5482

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: PD 5482

text: Xf-CGr-IC

text: A

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria sp.

characteristic: host scientific name

text: PD 5482

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 5482

text: Xanthomonas fragariae PD 5482


PD 6879

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PD 6879

text: Xf-CGr-IC

text: A

text: Netherlands

text: diseased

text: Fragaria sp.

text: PD 6879

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: PD 6879

text: Xanthomonas fragariae PD 6879

characteristic: title


PD 6840

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: PD 6840

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

text: A

text: Netherlands

text: diseased

text: Fragaria sp.

text: PD 6840

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 6840

text: Xanthomonas fragariae PD 6840


PD 6880

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: PD 6880

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: Netherlands

text: diseased

text: PD 6880

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 6880

characteristic: strain

text: Xanthomonas fragariae PD 6880


PD 6881

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: PD 6881

text: Xf-CGr-IC

text: A

text: Netherlands

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: PD 6881

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 6881

text: Xanthomonas fragariae PD 6881


PD 6882

characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PD 6882

text: Xf-CGr-IC

text: A

text: Netherlands

text: diseased

text: PD 6882

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: PD 6882

text: Xanthomonas fragariae PD 6882

characteristic: title


ICMP 20572

characteristic: ENA-FIRST-PUBLIC

text: public

text: ICMP 20572

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

text: A

text: USA

text: California

characteristic: geographic location (region and locality)

text: diseased

text: Fragaria � ananassa Duchesne

characteristic: host scientific name

text: ICMP 20572

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 20572

text: Xanthomonas fragariae ICMP 20572


ICMP 20573

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ICMP 20573

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: USA

text: California

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 20573

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 20573

characteristic: strain

text: Xanthomonas fragariae ICMP 20573


ICMP 20574

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ICMP 20574

text: Xf-CGr-IC

text: E

text: USA

characteristic: geographic location (country and/or sea)

text: California

text: diseased

characteristic: host health state

text: Fragaria � ananassa Duchesne

text: ICMP 20574

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 20574

text: Xanthomonas fragariae ICMP 20574


ICMP 20575

characteristic: ENA-FIRST-PUBLIC

text: public

text: ICMP 20575

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

text: A

text: USA

text: California

characteristic: geographic location (region and locality)

text: diseased

text: Fragaria � ananassa Duchesne

characteristic: host scientific name

text: ICMP 20575

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: ICMP 20575

text: Xanthomonas fragariae ICMP 20575

characteristic: title


GBBC 2087

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBBC 2087

text: Xf-CGr-IC

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: Belgium

text: diseased

text: Fragaria � ananassa

text: GBBC 2087

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: GBBC 2087

text: Xanthomonas fragariae GBBC 2087


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Xf-CGr-IC

text: C

text: Belgium

text: diseased

text: Fragaria � ananassa

text: diseased strawberry

text: IV

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

characteristic: strain

text: Xanthomonas fragariae JVD-0046


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Xf-CGr-IC

text: A

text: Belgium

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria � ananassa

characteristic: host scientific name

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: Xanthomonas fragariae JVD-0047


GBBC 2088

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBBC 2088

text: Xf-CGr-IC

characteristic: crispr

text: D

text: Belgium

text: diseased

text: Fragaria � ananassa

text: GBBC 2088

text: diseased strawberry

text: IV

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: GBBC 2088

text: Xanthomonas fragariae GBBC 2088

characteristic: title


NCPPB 1822

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

text: NCPPB 1822

text: Xf-CGr-II

text: A

characteristic: crispr spacer sequence

text: USA

text: diseased

text: Fragaria chiloensis var. ananassa

text: NCPPB 1822

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: NCPPB 1822

text: Xanthomonas fragariae NCPPB 1822


ICMP 6269

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ICMP 6269

characteristic: Submitter Id

text: Xf-CGr-II

text: A

text: New Zealand

text: Auckland

characteristic: geographic location (region and locality)

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 6269

text: diseased strawberry

text: I

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 6269

characteristic: strain

text: Xanthomonas fragariae ICMP 6269


NCPPB 2473

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: NCPPB 2473

characteristic: collection date

text: Xf-CGr-II

text: A

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria vesca

characteristic: host scientific name

text: NCPPB 2473

text: diseased strawberry

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: NCPPB 2473

text: Xanthomonas fragariae NCPPB 2473


PD 2660

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

text: PD 2660

text: Xf-CGr-II

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: New Zealand

text: diseased

text: Fragaria sp.

text: PD 2660

text: diseased strawberry

text: I

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: PD 2660

text: Xanthomonas fragariae PD 2660

characteristic: title


ICMP 6277

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ICMP 6277

characteristic: Submitter Id

text: Xf-CGr-II

text: A

text: New Zealand

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 6277

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 6277

text: Xanthomonas fragariae ICMP 6277


ICMP 6278

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ICMP 6278

characteristic: collection date

text: Xf-CGr-II

text: A

text: New Zealand

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 6278

text: diseased strawberry

text: I

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 6278

characteristic: strain

text: Xanthomonas fragariae ICMP 6278


CFBP 1558

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC last update

text: public

text: CFBP 1558

text: Xf-CGr-II

text: A

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria sp.

characteristic: host scientific name

text: CFBP 1558

text: diseased strawberry

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 1558

text: Xanthomonas fragariae CFBP 1558


ICMP 4019

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: ICMP 4019

text: Xf-CGr-II

characteristic: crispr

text: A

characteristic: crispr spacer sequence

text: New Zealand

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 4019

text: diseased strawberry

text: I

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: ICMP 4019

text: Xanthomonas fragariae ICMP 4019

characteristic: title


CFBP 6767

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: CFBP 6767

characteristic: Submitter Id

text: Xf-CGr-II

text: A

text: Australia

text: diseased

text: Fragaria � ananassa

text: CFBP 6767

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 6767

text: Xanthomonas fragariae CFBP 6767


ICMP 6646

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC first public

text: public

text: ICMP 6646

characteristic: collection date

text: Xf-CGr-II

text: A

text: Australia

text: New South Wales, Gosford

characteristic: geographic location (region and locality)

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 6646

text: diseased strawberry

text: I

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 6646

characteristic: strain

text: Xanthomonas fragariae ICMP 6646


ICMP 6648

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ICMP 6648

text: Xf-CGr-II

characteristic: crispr

text: A

text: Australia

characteristic: geographic location (country and/or sea)

text: New South Wales, Gosford

text: diseased

characteristic: host health state

text: Fragaria � ananassa Duchesne

characteristic: host scientific name

text: ICMP 6648

text: diseased strawberry

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: ICMP 6648

text: Xanthomonas fragariae ICMP 6648


ICMP 5813

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ICMP 5813

characteristic: Submitter Id

text: Xf-CGr-II

text: B

characteristic: crispr spacer sequence

text: Brazil

text: Cambui

text: diseased

text: Fragaria � ananassa Duchesne

text: ICMP 5813

text: diseased strawberry

text: I

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: ICMP 5813

text: Xanthomonas fragariae ICMP 5813

characteristic: title


PD 2662

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC first public

text: public

text: PD 2662

characteristic: collection date

text: Xf-CGr-II

text: A

text: Greece

text: diseased

text: Fragaria sp.

text: PD 2662

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 2662

text: Xanthomonas fragariae PD 2662


CFBP 2510

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CFBP 2510

text: Xf-CGr-II

characteristic: crispr

text: A

text: Spain

text: diseased

text: Fragaria sp.

text: CFBP 2510

text: diseased strawberry

text: I

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: CFBP 2510

characteristic: strain

text: Xanthomonas fragariae CFBP 2510


NCPPB 3743

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: NCPPB 3743

text: Xf-CGr-II

text: B

text: Brazil

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Fragaria hybrid cv. Campinas

characteristic: host scientific name

text: NCPPB 3743

text: diseased strawberry

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: NCPPB 3743

text: Xanthomonas fragariae NCPPB 3743


characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

characteristic: Submitter Id

text: Xf-CGr-II

text: A

characteristic: crispr spacer sequence

text: Switzerland

text: Thurgau, Neukirch

characteristic: geographic location (region and locality)

text: diseased

text: Fragaria sp.

text: diseased strawberry

text: I

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: Xanthomonas fragariae F1-81

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Xf-CGr-II

text: A

text: Switzerland

text: Thurgau, Neukirch

text: diseased

text: Fragaria cv. Polka

characteristic: isolate

text: diseased strawberry

characteristic: isolation source

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: Xanthomonas fragariae F1-80


characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Xf-CGr-II

characteristic: crispr

text: A

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Zurich, Rudolfingen

text: diseased

text: Fragaria sp.

text: diseased strawberry

text: I

characteristic: mlva

text: Xanthomonas fragariae

text: Xanthomonas fragariae

characteristic: strain

text: Xanthomonas fragariae F2-02


PD 3145

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: PD 3145

characteristic: Submitter Id

text: Xf-CGr-II

text: A

characteristic: crispr spacer sequence

text: Spain

text: diseased

characteristic: host health state

text: Fragaria sp.

characteristic: host scientific name

text: PD 3145

text: diseased strawberry

text: I

text: Xanthomonas fragariae

text: Xanthomonas fragariae

text: PD 3145

text: Xanthomonas fragariae PD 3145


NBC 2815

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NBC 2815

text: Xf-CGr-II

text: A

text: Spain

text: diseased

text: Fragaria sp.

text: NBC 2815

text: diseased strawberry

text: I

text: Xanthomonas fragariae

characteristic: organism

text: Xanthomonas fragariae

text: NBC 2815

text: Xanthomonas fragariae NBC 2815

characteristic: title


E-MTAB-6656:Sample 10

characteristic: ENA-LAST-UPDATE

text: University of Cambridge

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6656:Sample 10

tag: Namespace:University of Cambridge

text: quarterhorse

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: E. Derm (NBL-6)

characteristic: cell line

text: fibroblast of dermis

characteristic: cell type

text: horse

characteristic: common name

text: Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by use of the RiboZero kit (Illumina). Library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing.

characteristic: description

text: Equus caballus

text: Equus caballus

text: skin

characteristic: organism part

text: Equus caballus

text: Sample 10


E-MTAB-6656:Sample 1

characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Cambridge

text: public

text: E-MTAB-6656:Sample 1

characteristic: Submitter Id

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 1


E-MTAB-6656:Sample 2

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6656:Sample 2

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 2


E-MTAB-6656:Sample 3

text: University of Cambridge

text: public

characteristic: INSDC status

text: E-MTAB-6656:Sample 3

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

characteristic: organism

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 3

characteristic: title


E-MTAB-6656:Sample 4

characteristic: ENA-LAST-UPDATE

text: University of Cambridge

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6656:Sample 4

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 4


E-MTAB-6656:Sample 5

text: University of Cambridge

text: public

text: E-MTAB-6656:Sample 5

text: quarterhorse

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: E. Derm (NBL-6)

characteristic: cell line

text: fibroblast of dermis

text: horse

text: Equus caballus

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 5


E-MTAB-6656:Sample 6

text: University of Cambridge

text: public

text: E-MTAB-6656:Sample 6

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

characteristic: cell type

text: horse

characteristic: common name

characteristic: description

text: Equus caballus

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 6


E-MTAB-6656:Sample 7

characteristic: ENA-CHECKLIST

characteristic: External Id

text: University of Cambridge

text: public

text: E-MTAB-6656:Sample 7

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

text: Equus caballus

text: skin

characteristic: organism part

text: Equus caballus

text: Sample 7


E-MTAB-6656:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: University of Cambridge

characteristic: INSDC first public

text: public

text: E-MTAB-6656:Sample 8

characteristic: Submitter Id

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 8


E-MTAB-6656:Sample 9

text: University of Cambridge

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6656:Sample 9

text: quarterhorse

text: ArrayExpress

text: E. Derm (NBL-6)

text: fibroblast of dermis

text: horse

text: Equus caballus

characteristic: organism

text: Equus caballus

text: skin

text: Equus caballus

text: Sample 9


status: KILLED

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: killed

text: sam_FOHMtest_e04a86bf-4a91-46ef-a260-7558afce718a

tag: Namespace:Public Health Agency of Sweden

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Multi-color lineage tracing from initiation to metastasis


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF CALIFORNIA - SAN FRANCISCO

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_553c9049-c84d-4785-b8bc-1678459f7b9a

text: FOHM

text: Sweden

text: Homo sapiens

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Chinese hamster ovary cells

characteristic: cell line

text: Chinese hamster

text: Inno Biologics Sdn. Bhd.

characteristic: culture collection

text: Cricetulus griseus

text: Cricetulus griseus

characteristic: sub strain

text: Chinese hamster ovary cells extracted using LIS and produced scaffold fractions


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Chinese hamster ovary cells

text: Chinese hamster

text: Inno Biologics Sdn. Bhd.

text: Cricetulus griseus

text: Cricetulus griseus

text: Chinese hamster ovary cells extracted using 2M NaCl and produced loop fractions


text: VILNIUS UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:VILNIUS UNIVERSITY

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: DATA


characteristic: ENA-LAST-UPDATE

text: UNIVERSITI KEBANGSAAN MALAYSIA

characteristic: INSDC center name

text: public

text: Chinese hamster ovary cells

text: Chinese hamster

text: Inno Biologics Sdn. Bhd.

text: Cricetulus griseus

text: Cricetulus griseus

text: Chinese hamster ovary cells extracted using LIS and produced loop fractions


text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: Chinese hamster ovary cells

text: Chinese hamster

text: Inno Biologics Sdn. Bhd.

text: Cricetulus griseus

text: Cricetulus griseus

text: Chinese hamster ovary cells extracted using 2M NaCl and produced matrix fractions


text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: HEK293 cells

text: human

text: Inno Biologics Sdn. Bhd.

text: Homo sapiens

text: Homo sapiens

text: Human embryonic kidney cells extracted using 2M NaCl and produced matrix fractions


text: Copadichromis virginalis

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Copadichromis virginalis

text: Copadichromis virginalis

text: Copadichromis virginalis

characteristic: subject id


text: Copadichromis chrysonotus

text: SC

text: public

characteristic: SRA accession

text: Copadichromis chrysonotus

text: Copadichromis chrysonotus

text: Copadichromis chrysonotus

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITI KEBANGSAAN MALAYSIA

text: public

text: human

characteristic: common name

text: Inno Biologics Sdn. Bhd.

text: Homo sapiens

text: Homo sapiens

text: Human embryonic kidney cells extracted using 2M NaCl and produced loop fractions


E-MTAB-64561524044408:ODN2, 12%, ox, r4

characteristic: External Id

text: public

unit: millimolar

characteristic: Mg2SO4 concentration

text: E-MTAB-64561524044408:ODN2, 12%, ox, r4

tag: Namespace:Department of Chemistry University of Cambridge

text: ArrayExpress

characteristic: broker name

unit: nanomolar

characteristic: dATP dilution concentration

text: Protocols: ODN 1: NNNNNNNNNNATCGAGAATCCCGGTGCCGATACCXACTCTTGYAGAANNNNNNNNNNCGTGTCAGATATATACATCCGAT (N: random ATGC, X and Y: 5hmU); The template ODN was purchased from ATDbio. The double stranded DNA was synthesized by single-extension PCR using 5'-ATCGGATGTATATATCTGACACG-as the primer. ODN 2: GCTCGCTTTGTTGGTTTCCTTGTTCTCTGTGCCCACTGCCTGACGGGCGGAAAGCAGCGCGAGCAAGCGAGACAGGACAC; The template ODN was purchased from Life Technologies. The double-stranded DNA was prepared by single-extension PCR using 5'-GTGTCCTGTCTCGCTTGCTCGCGCTGCTTT-3' as the primer where TTP (10 mM) was substituted by a mixture of TTP and 5hmdUTP (Trilink biotechnologies) in a ratio of 0:1, 1:1, 3:1, 7:1, 15:1, 1:0 to obtain fully, or partially 5hmU modified ODN pools. ODN 3: CTGTGGCTCTGCGTCCTTGTCCTNNNNNNACACAGCGCAN5NGAACGACGAGGCACAACAGAGAGCAACACCGCCGAGGA (N: random A or T or G or C, 5:5hmU); The template ODN was purchased from ATDbio. The double stranded DNA was synthesized by single-extension PCR using 5'-TCCTCGGCGGTGTTGCTCTCTGTTGTGCCT-3'as the primer. Purified by DNA Clean & Concentratorâ„¢-5 (Zymo Research). Detailed information is available in the liked publication. Briefly, the DNA was ligated with a custom adapter partially bearing Truseq LT adapter (Illumina) sequences, followed by KRuO4-mediated oxidation to oxidise 5hmU. Then single extension PCR was carried out to create libraries with and full length Truseq adapter sequence as well as information of 5hmU locations. The libraries were then amplified by PCR (6-8 cycles).

characteristic: description

text: Bst DNA Polymerase, Large Fragment

characteristic: enzyme

characteristic: oligo

text: synthetic construct

text: synthetic construct

text: ox

characteristic: oxidation treatment

characteristic: replicate

text: synthetic construct

text: ODN2, 12%, ox, r4


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Alfred Wegener Institute for Polar and Marine Research

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 8666:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: collection date

text: Surface waters Total eukaryotic community from station 1E

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

text: microbial feature [ENVO:01000007]|marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8665:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station 1E at the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: public

text: 8664:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Total eukaryotic community from station 1E below the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8663:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Surface waters Total eukaryotic community from station 1W

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


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text: public

text: 8662:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Total eukaryotic community from station 1W at the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8661:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station 1W below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: public

text: 8660:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Surface waters Total eukaryotic community from station N4

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8659:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station N4 at the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: Alfred Wegener Institute for Polar and Marine Research

text: public

text: 8658:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Total eukaryotic community from station N4 below the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8657:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Surface waters Total eukaryotic community from station HG1

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

text: microbial feature [ENVO:01000007]|marine photic zone [ENVO:00000209]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: public

text: 8656:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Total eukaryotic community from station HG1 at the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8655:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station HG1 below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: public

text: 8654:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Surface waters Total eukaryotic community from station HG4

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8653:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station HG4 at the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: public

text: 8652:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Total eukaryotic community from station HG4 below the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8651:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Surface waters Total eukaryotic community from station EG4

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: Alfred Wegener Institute for Polar and Marine Research

text: public

text: 8650:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Total eukaryotic community from station EG4 at the chl. A max

text: marine pelagic biome [ENVO:01000023]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8649:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station EG4 below the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water


characteristic: ENA-CHECKLIST

text: public

text: 8648:52931ebc-8309-42c6-ab81-1f66bb8d12c3

text: GFBIO

text: Surface waters Total eukaryotic community from station EG3

text: marine pelagic biome [ENVO:01000023]

text: microbial feature [ENVO:01000007]|marine photic zone [ENVO:00000209]

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Greenland Sea

characteristic: geographic location (region and locality)

text: mimarks-survey

characteristic: investigation type

text: marine plankton metagenome

characteristic: organism

text: ABYSS; FRAM

characteristic: project name

text: marine plankton metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 18S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 8647:52931ebc-8309-42c6-ab81-1f66bb8d12c3

characteristic: Submitter Id

characteristic: associated prokaryotic sample

text: GFBIO

characteristic: broker name

characteristic: collection date

text: Total eukaryotic community from station EG3 at the chl. A max

characteristic: description

text: marine pelagic biome [ENVO:01000023]

characteristic: environment (biome)

characteristic: environment (feature)

text: sea water [ENVO:00002149]

text: water

text: Arctic Ocean

text: Greenland Sea

text: mimarks-survey

text: marine plankton metagenome

text: ABYSS; FRAM

text: marine plankton metagenome

text: Illumina MiSeq

text: true

text: 18S rRNA

characteristic: title

text: water