characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Cornell University

characteristic: INSDC center name

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characteristic: co

characteristic: collection date

text: soil metagenome

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characteristic: cumc

characteristic: description

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: gmoist

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: A

text: soil metagenome

text: Illumina

text: Woods

text: soil

text: ITS2 region

text: post

text: control


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Cornell University

characteristic: Submitter Id

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characteristic: ba

characteristic: be

text: soil metagenome

text: forest

text: forest

text: soil

characteristic: fe

text: USA

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

text: mimarks-survey

characteristic: k

characteristic: li

characteristic: mg

characteristic: mn

characteristic: mo

characteristic: ni

text: soil metagenome

characteristic: organism

characteristic: p

characteristic: pb

characteristic: ph

text: C

characteristic: plot

text: Short- and Long-term Effects of Liming on Forest Soil Decomposers

characteristic: project name

text: soil metagenome

text: Illumina

text: Woods

text: soil

text: ITS2 region

text: post

text: control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

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characteristic: description

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: gmoist

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: A

text: soil metagenome

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text: ITS2 region

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text: limed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: al

characteristic: as

characteristic: b

characteristic: ba

characteristic: be

text: soil metagenome

text: forest

text: forest

text: soil

characteristic: fe

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

characteristic: k

characteristic: li

characteristic: mg

characteristic: mn

characteristic: mo

characteristic: ni

text: soil metagenome

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characteristic: p

characteristic: pb

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text: B

characteristic: plot

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characteristic: sequencing method

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text: soil

text: ITS2 region

text: post

text: limed


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

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text: public

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characteristic: al

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characteristic: be

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characteristic: collection date

text: soil metagenome

characteristic: common name

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characteristic: cu

characteristic: cumc

characteristic: description

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

characteristic: fe

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: gmoist

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: C

text: soil metagenome

text: Illumina

text: Woods

text: soil

text: ITS2 region

text: post

text: limed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

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characteristic: Submitter Id

characteristic: al

characteristic: as

characteristic: b

characteristic: ba

characteristic: be

characteristic: ca

characteristic: cd

characteristic: co

characteristic: collection date

text: soil metagenome

text: forest

text: forest

text: soil

text: USA

text: mimarks-survey

characteristic: k

characteristic: li

characteristic: mg

characteristic: mn

characteristic: mo

characteristic: ni

text: soil metagenome

characteristic: organism

characteristic: p

characteristic: pb

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characteristic: plot

characteristic: project name

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text: soil metagenome

characteristic: se

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characteristic: sequencing method

text: Woods

text: soil

text: ITS2 region

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: al

characteristic: as

characteristic: b

characteristic: ba

characteristic: be

characteristic: ca

characteristic: cd

characteristic: co

characteristic: collection date

text: soil metagenome

characteristic: common name

characteristic: cr

characteristic: cu

characteristic: cumc

characteristic: description

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

characteristic: fe

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: gmoist

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: E

text: soil metagenome

text: Illumina

text: Woods

text: soil

text: ITS2 region

text: post

text: limed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

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characteristic: Submitter Id

characteristic: al

characteristic: as

characteristic: b

characteristic: ba

characteristic: be

characteristic: ca

characteristic: cd

characteristic: co

characteristic: collection date

text: soil metagenome

text: forest

text: forest

text: soil

text: USA

text: mimarks-survey

characteristic: k

characteristic: li

characteristic: mg

characteristic: mn

characteristic: mo

characteristic: ni

text: soil metagenome

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characteristic: pb

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characteristic: plot

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characteristic: sequencing method

text: Woods

text: soil

text: ITS2 region

text: post

text: control


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: al

characteristic: as

characteristic: b

characteristic: ba

characteristic: be

characteristic: ca

characteristic: cd

characteristic: co

characteristic: collection date

text: soil metagenome

characteristic: common name

characteristic: cr

characteristic: cu

characteristic: cumc

characteristic: description

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

characteristic: fe

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: gmoist

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: E

text: soil metagenome

text: Illumina

text: Woods

text: soil

text: ITS2 region

text: post

text: control


BSG1_L Testes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Massachusetts, Lowell

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: BSG1_L Testes

tag: Namespace:University of Massachusetts, Lowell

characteristic: Submitter Id

text: three-spined stickleback

text: Gonadal tissue from three threespine stickleback males (GPS-01,GPS-04,GPS-07) caught during May 2010 in the lake Grosser Ploener See was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

characteristic: lat lon

text: Gasterosteus aculeatus

characteristic: organism

text: Gasterosteus aculeatus

text: Male

characteristic: sex

text: Testes

characteristic: tissue type

text: BSG1_L Testes

characteristic: title


BSG1_L Ovaries

text: University of Massachusetts, Lowell

text: public

text: BSG1_L Ovaries

text: three-spined stickleback

characteristic: common name

text: Gonadal tissue from three threespine stickleback females (BS02,BS08,BS10) caught during May 2010 in the lake Grosser Ploener See was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Female

text: Ovaries

text: BSG1_L Ovaries


BSG1_R Testes

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Massachusetts, Lowell

text: public

text: BSG1_R Testes

text: three-spined stickleback

text: Gonadal tissue from three threespine stickleback males (BS03,BS05,BS09) caught during May 2010 in the river Malenter Au was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Male

text: Testes

text: BSG1_R Testes


BSG1_R Ovaries

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Massachusetts, Lowell

text: public

text: BSG1_R Ovaries

text: three-spined stickleback

text: Gonadal tissue from three threespine stickleback females (BS01,BS07,BS11) caught during May 2010 in the river Malenter Au was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Female

text: Ovaries

text: BSG1_R Ovaries


BSG2_L Testes

text: University of Massachusetts, Lowell

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: BSG2_L Testes

text: three-spined stickleback

text: Gonadal tissue from one threespine stickleback male (BS16) caught during May 2010 in the lake Westensee was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Male

text: Testes

text: BSG2_L Testes


BSG2_L Ovaries

text: University of Massachusetts, Lowell

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: BSG2_L Ovaries

text: three-spined stickleback

text: Gonadal tissue from three threespine stickleback females (BS14,BS20,BS24) caught during May 2010 in the lake Westensee was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Female

text: Ovaries

text: BSG2_L Ovaries


BSG2_R Testes

text: University of Massachusetts, Lowell

text: public

characteristic: SRA accession

text: BSG2_R Testes

characteristic: Submitter Id

text: three-spined stickleback

text: Gonadal tissue from three threespine stickleback males (BS13,BS17,BS21) caught during May 2010 in the river Eider was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Male

text: Testes

text: BSG2_R Testes


BSG2_R Ovaries

text: University of Massachusetts, Lowell

text: public

text: BSG2_R Ovaries

text: three-spined stickleback

text: Gonadal tissue from two threespine stickleback females (BS19,BS23) caught during May 2010 in the river Eider was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Germany

characteristic: lat lon

text: Gasterosteus aculeatus

characteristic: organism

text: Gasterosteus aculeatus

text: Female

text: Ovaries

text: BSG2_R Ovaries


BSCa_L Testes

text: University of Massachusetts, Lowell

text: public

text: BSCa_L Testes

text: three-spined stickleback

text: Gonadal tissue from one threespine stickleback male (BS48) caught during September 2010 in Misty Lake was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Canada

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Male

characteristic: sex

text: Testes

characteristic: tissue type

text: BSCa_L Testes


BSCa_L Ovaries

text: University of Massachusetts, Lowell

text: public

text: BSCa_L Ovaries

text: three-spined stickleback

characteristic: common name

text: Gonadal tissue from two threespine stickleback females (BS46,BS54) caught during September 2010 in Misty Lake was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Canada

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Female

text: Ovaries

text: BSCa_L Ovaries

characteristic: title


BSCa_R Testes

text: University of Massachusetts, Lowell

text: public

text: BSCa_R Testes

text: three-spined stickleback

text: Gonadal tissue from two threespine stickleback males (BS43,BS51) caught during September 2010 in an inlet stream to Misty Lake was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

characteristic: description

text: Canada

characteristic: geographic location (country and/or sea)

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Male

text: Testes

text: BSCa_R Testes


BSCa_R Ovaries

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Massachusetts, Lowell

text: public

text: BSCa_R Ovaries

text: three-spined stickleback

text: Gonadal tissue from three threespine stickleback females (BS45,BS49,BS53) caught during September 2010 in an inlet stream to Misty Lake was used for RNA extraction using a Qiagen Omniscript RT kit following the manufacturer's protocol.

text: Canada

text: Gasterosteus aculeatus

text: Gasterosteus aculeatus

text: Female

text: Ovaries

text: BSCa_R Ovaries


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SYDNEY

text: public

tag: Namespace:UNIVERSITY OF SYDNEY

text: koala

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: Resequenced koala genome for immune study


text: Philipps University Marburg

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Philipps University Marburg

characteristic: collection date

text: Norway spruce

text: Germany

text: Bavarian Forest National Park

characteristic: geographic location (region and locality)

characteristic: isolate

text: 49.094607 13.290166

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ortet tree 65


text: Philipps University Marburg

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Norway spruce

text: Germany

text: Bavarian Forest National Park

text: 49.094607 13.290166

characteristic: lat lon

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ortet tree 67


text: Philipps University Marburg

text: public

text: Norway spruce

characteristic: common name

text: Germany

text: Bavarian Forest National Park

text: 49.094607 13.290166

text: Picea abies

characteristic: organism

text: Picea abies

text: Needle

characteristic: tissue type

text: Needles of the ortet tree 68

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Philipps University Marburg

text: public

text: Norway spruce

text: Germany

characteristic: geographic location (country and/or sea)

text: Bavarian Forest National Park

text: 49.094607 13.290166

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ortet tree 72


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Philipps University Marburg

characteristic: INSDC center name

text: public

text: Norway spruce

text: Germany

text: Uebersee

text: 47.83361 12.4575

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ramet tree 65


text: Philipps University Marburg

characteristic: INSDC first public

text: public

characteristic: collection date

text: Norway spruce

text: Germany

text: Uebersee

characteristic: geographic location (region and locality)

text: 47.83361 12.4575

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ramet tree 67


text: Philipps University Marburg

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Norway spruce

text: Germany

text: Uebersee

characteristic: isolate

text: 47.83361 12.4575

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ramet tree 68


text: Philipps University Marburg

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Norway spruce

text: Germany

text: Uebersee

text: 47.83361 12.4575

characteristic: lat lon

text: Picea abies

text: Picea abies

text: Needle

text: Needles of the ramet tree 72


text: UOM

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Barrett's oesophagus biopsies were collected from routine endoscopies and placed into PBS on ice. Biopsies were minced with a scalpel and lysed in ATAC lysis buffer and Tn5 reactions were performed as described in Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. 2013. Jason D. Buenrostro, Paul G. Giresi, Lisa C. Zaba, Howard Y. Chang and William J. Greenleaf. doi:10.1038/nmeth.2688 Libraries were constructed by amplifying transposed DNA with Illumina Nextera adapters

characteristic: description

text: Barrett's esophagus

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: esophagus

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:1. Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom.  2. Molecular Biology of Malaria and Opportunistic Parasites Research Unit, Department of Parasitology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.

text: ArrayExpress

text: Ubon Ratchathani

characteristic: cohort

text: human

text: Protocols: Patients were recruited from malaria endemic areas in Thailand (Ubon Ratchathani and Yala). Patients were confirmed infected with P. vivax through microscopic examination and molecular approach. Blood specimen was preserved in RNALater until processed. Five hundred micro litre of each blood specimen preserved in RNALater® was processed individually using a QIAamp RNA blood mini kit. RNA samples were treated with DNase, followed by Epicentre Globin-Zero Gold kit to deplete rRNA and globin transcript. RNA-seq libraries were prepared using the NEBNext Ultra Directional protocol.

text: Plasmodium vivax malaria

text: Plasmodium vivax

characteristic: infection

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


text: 1. Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom. 2. Molecular Biology of Malaria and Opportunistic Parasites Research Unit, Department of Parasitology, Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Ubon Ratchathani

text: human

text: Plasmodium vivax malaria

text: Plasmodium vivax

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


text: public

text: ArrayExpress

characteristic: broker name

text: Yala

text: human

characteristic: common name

characteristic: description

text: Plasmodium vivax malaria

characteristic: disease

text: Plasmodium vivax

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: UCL

text: public

text: Female P. wingei captive population

text: Poecilia wingei

characteristic: organism

text: Poecilia wingei

text: Female

characteristic: sex

text: 293_15 Female P. wingei


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCL

text: public

text: Male P. wingei captive population

text: Poecilia wingei

text: Poecilia wingei

text: Male

text: 295_6 Male P. wingei


text: UCL

characteristic: INSDC center name

text: public

text: Male P. wingei captive population

text: Poecilia wingei

text: Poecilia wingei

text: Male

text: 296_7 Male P. wingei


text: DTU-GE

text: public

text: DTU Bioinformatics

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU Bioinformatics

characteristic: broker name

text: NIPH-NIH

text: No

text: Poland

text: not provided

text: unidentified

text: Yes

text: Food

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ayelet

characteristic: INSDC center name

text: public

text: PBMCs

characteristic: bio material

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Naive B-Cell repertoire

characteristic: title


text: DTU-GE

text: public

text: DTU Bioinformatics

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella_enterica_subsp_enterica_1,4,5,12:i:-_130-13

characteristic: isolate

text: Human

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU Bioinformatics

characteristic: broker name

text: NIPH-NIH

text: No

text: Poland

text: not provided

text: unidentified

text: Yes

text: Salmonella_enterica_subsp_enterica_1,4,5,12:i:-_169-13

text: Food

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU Bioinformatics

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: unidentified

text: Yes

text: Salmonella_enterica_subsp_enterica_1,4,5,12:i:-_295-13

text: Human

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU Bioinformatics

text: NIPH-NIH

text: No

text: Poland

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella_enterica_subsp_enterica_1,4,5,12:i:-_357-13

characteristic: isolate

text: Human

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU Bioinformatics

characteristic: broker name

text: NIPH-NIH

text: No

text: Poland

text: not provided

text: unidentified

text: Yes

text: Salmonella_enterica_subsp_enterica_1,4,5,12:i:-_372-13

text: Human

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU Bioinformatics

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

text: unidentified

text: Yes

text: Salmonella_enterica_subsp_enterica_1,4,5,12:i:-_358-13

text: Human

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU Bioinformatics

text: NIPH-NIH

text: No

text: Poland

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

characteristic: isolation source host associated

text: Escherichia coli

text: Escherichia coli


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:SEOUL NATIONAL UNIVERSITY COLLEGE OF MEDICINE

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Prenatal diagnosis of multiple X-linked diseases

characteristic: title


characteristic: External Id

text: SEOUL NATIONAL UNIVERSITY COLLEGE OF MEDICINE

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCL

text: public

text: Female P. wingei captive population

characteristic: description

text: Poecilia wingei

text: Poecilia wingei

text: 291_13 Female P. wingei


characteristic: ENA-LAST-UPDATE

text: UCL

text: public

text: Female P. wingei captive population

text: Poecilia wingei

text: Poecilia wingei

text: 292_14 Female P. wingei


text: UCL

text: public

text: Male P. wingei captive population

text: Poecilia wingei

text: Poecilia wingei

text: Male

characteristic: sex

text: 294_5 Male P. wingei


text: UNIVERSITY OF COPENHAGEN

text: public

tag: Namespace:UNIVERSITY OF COPENHAGEN

text: MRSA isolated from human

text: Staphylococcus aureus

text: Staphylococcus aureus


text: UNIVERSITY OF COPENHAGEN

text: public

text: MRSA isolated from pig

text: Staphylococcus aureus

text: Staphylococcus aureus


text: DTU-GE

text: public

text: DTU Bioinformatics

characteristic: broker name

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not provided

characteristic: host health state

text: unidentified

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Human

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU Bioinformatics

text: NIPH-NIH

text: No

text: Poland

text: not provided

text: unidentified

text: Yes

text: Food

characteristic: isolation source host associated

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Sassari

text: public

tag: Namespace:University of Sassari

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: US306_2 Taxonomy ID:256318

characteristic: description

text: anthropogenic environment

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: sediment

characteristic: environmental package

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: Sassari

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

characteristic: mgrast id

text: metagenome

characteristic: project name

characteristic: sample name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: illumina

characteristic: sequencing method

text: US306_2 Taxonomy ID:256318

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Sassari

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection date

characteristic: collection time

text: US306_1 Taxonomy ID:256318

characteristic: description

text: anthropogenic environment

text: organic feature

text: sediment

text: sediment

text: Italy

characteristic: geographic location (longitude)

text: Sassari

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: illumina

text: US306_1 Taxonomy ID:256318


text: Wellcome Trust Sanger Institute

text: public

tag: Namespace:Wellcome Trust Sanger Institute

unit: week

characteristic: age

text: ArrayExpress

text: splenocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The spleen from a C57BL/6Jax mouse was mashed by a 2-ml syringe plunger through a 70 μm cell strainer (Fisher Scientific 10788201) into 30 ml 1X DPBS (ThermoFisher 14190169) supplied with 2 mM EDTA and 0.5% (w/v) BSA (Sigma A9418). Cells were centrifuged down, supernatant was removed, and the cell pellet was briefly vortexed. 5 ml 1X RBC lysis buffer (ThermoFisher 00-4300-54) was used to resuspend the cell pellet, and the cell suspension was vortexed again, and left on bench for 5 minutes to lyse red blood cells. Then 45 ml 1X DPBS was added, and cells were centrifuged down. 30 ml 1X DPBS were used to resuspend the cell pellet. The cell suspension was passed through a Miltenyi 30 μm Pre-Separation Filter (Miltenyi 130-041-407), and the cell number was determined using C-chip counting chamber (VWR DHC-N01). All centrifugations were done at 500 g, 4 °C, 5 minutes. After tagmentation, DAPI was added at a final concentration of 1 ug/ml. Then DAPI positive nuclei were sorted into 384-well plate using BD-INFLUX sorter. The nuclei sorting was performed at the Flow Cytometry facility at the Wellcome Trust Sanger Institute. Nuclei prepration and ATAC-seq procedure are performed simultaneously, i.e. Fast-ATAC protocol was used (Corces et al. Nature Genetics, 48, 1193-1203, 2016). Briefly, 50,000 cells were pelleted down at 500 g, 4 degree for 5 minutes. Then cell pellet was resuspended in 50 ul tagmentation mix containing 33 mM Tris-acetate, pH7.8, 66 mM potassium acetate, 10 mM magnesium acetate, 16% (v/v) dimethylformamide, 0.01% digitonin, 5 ul Tn5 transposes (Nextera kit, Illumina Cat No. FC-121-1030). The tagmentation reaction was put on a thermomixer, with 37 degree for 30 minutes. Then reaction was stopped by adding 50 ul 20 mM EDTA pH 8.0. After tagmentation, DAPI was added at a final concentration of 1 ug/ml. Then DAPI positive nuclei were sorted into 384-well plate using BD-INFLUX sorter. The nuclei sorting was performed at the Flow Cytometry facility at the Wellcome Trust Sanger Institute. DNA was purified first by Qiagen minElute PCR purification kit according to the manufacturer's instruction, then by AmupureXP beads with 0.5X upper cutoff and a 1.2X lower cutoff according to manufacturer's instruction. Libraries were constructed in the Illumina Nextera DNA Library preparation kit.

text: wild type genotype

characteristic: genotype

text: mouse 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: splenocyte

text: house mouse

text: wild type genotype

text: mouse 2

text: Mus musculus

text: Mus musculus

text: spleen

text: fail

text: Mus musculus

text: male


text: Wellcome Trust Sanger Institute

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: splenocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

characteristic: genotype

text: mouse 1

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: pass

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

text: ArrayExpress

text: splenocyte

text: house mouse

text: wild type genotype

text: mouse 2

characteristic: individual

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: splenocyte

text: house mouse

text: wild type genotype

text: mouse 1

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: male


text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: splenocyte

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse 2

text: Mus musculus

text: Mus musculus

text: spleen

text: Mus musculus

text: male


ACRNAN

characteristic: ENA-CHECKLIST

text: UNIVERSITY COLLEGE LONDON

text: public

text: ACRNAN

tag: Namespace:UNIVERSITY COLLEGE LONDON

text: Genome sequence (v.1) of the parthenogenetic cephalobid nematode Acrobeloides nanus.

text: Acrobeloides nanus

characteristic: organism

text: Acrobeloides nanus

text: female

characteristic: sex

text: The A. nanus genome


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: Alyssum argenteum

text: Alyssum argenteum

text: Alyssum argenteum genomic DNA sample for illumina sequencing


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:National Institute of Public Health - National Institute of Hygiene

characteristic: Submitter Id

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Poland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Homo sapiens

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feaces

characteristic: isolation source host associated

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

text: Salmonella


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: National Institute of Public Health - National Institute of Hygiene

characteristic: INSDC center name

text: public

text: NIPH-NIH

text: No

text: Poland

text: Homo sapiens

text: Yes

text: Feaces

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Stanleyville

text: Salmonella

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NIPH-NIH

characteristic: collected by

characteristic: collection date

text: No

text: Poland

text: Food

text: No

text: Food

text: Salmonella enterica

text: Salmonella enterica

text: Derby

text: Salmonella


text: T cell

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: Balb/c

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: T cell

characteristic: phenotype

text: Mus musculus

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF OXFORD

text: public

tag: Namespace:UNIVERSITY OF OXFORD

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: human patient

characteristic: isolation source

text: 51.752022, -1.257677

characteristic: lat lon

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


characteristic: External Id

text: UNIVERSITY OF OXFORD

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: United Kingdom

text: diseased

text: Homo sapien

text: human patient

text: 51.75 N 1.25 W

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: Aurinia saxatilis

text: Aurinia saxatilis

text: Alyssum saxatile genomic DNA sample for illumina sequencing


characteristic: ENA-LAST-UPDATE

text: public

text: Anastatica hierochuntica

text: Anastatica hierochuntica

text: Anastatica hierochuntica genomic DNA sample for illumina sequencing


text: public

text: Biscutella auriculata

text: Biscutella auriculata

text: Biscutella auriculata genomic DNA sample for illumina sequencing


text: public

text: Boechera puberula

text: Boechera puberula

text: Boechera puberula genomic DNA sample for illumina sequencing


text: public

text: Cochlearia officinalis

text: Cochlearia officinalis

text: Cochlearia officinalis genomic DNA sample for illumina sequencing


text: public

text: Conringia planisiliqua

text: Conringia planisiliqua

text: Conringia planisiliqua genomic DNA sample for illumina sequencing


text: public

text: Erucastrum elatum

text: Erucastrum elatum

text: Erucastrum elatum genomic DNA sample for illumina sequencing


text: public

text: Erysimum cheiri

text: Erysimum cheiri

text: Erysimum cheiri genomic DNA sample for illumina sequencing


text: public

text: Heliophila coronopifolia

text: Heliophila coronopifolia

text: Heliophila coronopifolia genomic DNA sample for illumina sequencing


text: public

text: Iberis amara

text: Iberis amara

text: Iberis amara genomic DNA sample for illumina sequencing


text: public

text: Iberis pinnata

text: Iberis pinnata

text: Iberis pinnata genomic DNA sample for illumina sequencing


text: public

text: Isatis lusitanica

text: Isatis lusitanica

text: Isatis lusitanica genomic DNA sample for illumina sequencing


text: public

text: Isatis tinctoria

text: Isatis tinctoria

text: Isatis tinctoria genomic DNA sample for illumina sequencing


text: public

text: Kernera saxatilis

text: Kernera saxatilis

text: Kernera saxatilis genomic DNA sample for illumina sequencing


text: public

text: Lepidium africanum

text: Lepidium africanum

text: Lepidium africanum genomic DNA sample for illumina sequencing


text: public

text: Macropodium nivale

text: Macropodium nivale

text: Macropodium nivale genomic DNA sample for illumina sequencing


text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: Nasturtium officinale

text: Nasturtium officinale

text: Nasturtium officinale genomic DNA sample for illumina sequencing


text: public

text: Noccaea caerulescens

text: Noccaea caerulescens

text: Noccaea caerulescens genomic DNA sample for illumina sequencing


text: public

text: Noccaea goesingensis

text: Noccaea goesingensis

text: Noccaea goesingensis genomic DNA sample for illumina sequencing


text: public

text: Physaria acutifolia

text: Physaria acutifolia

text: Physaria acutifolia genomic DNA sample for illumina sequencing


text: public

text: Fendler's bladderpod

characteristic: common name

text: Physaria fendleri

text: Physaria fendleri

text: Physaria fendleri genomic DNA sample for illumina sequencing


text: public

text: Pseudoturritis turrita

text: Pseudoturritis turrita

text: Pseudoturritis turrita genomic DNA sample for illumina sequencing


text: public

text: Sisymbrium altissimum

text: Sisymbrium altissimum

text: Sisymbrium altissimum genomic DNA sample for illumina sequencing


text: public

text: tower rockcress

text: Turritis glabra

text: Turritis glabra

text: Turritis glabra genomic DNA sample for illumina sequencing


text: public

text: Thlaspi bulbosum

text: Thlaspi bulbosum

text: Raparia bulbosa genomic DNA sample for illumina sequencing


text: public

text: Physaria ovalifolia

text: Physaria ovalifolia

text: Physaria ovalifolia genomic DNA sample for illumina sequencing


text: public

text: Lepidium aucheri

text: Lepidium aucheri

text: Lepidium aucheri genomic DNA sample for illumina sequencing


text: public

text: Erysimum pusillum

text: Erysimum pusillum

text: Erysimum pusillum genomic DNA sample for illumina sequencing


text: UOM

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: Cells were cultured in 37deg incubator with 5% CO2. RNA was collected using Qiagen RNeasy kit. Cells were lysed directly in the plate. RNA-seq libraries were constructed using Illumina TruSeq Stranded mRNA kit.

characteristic: description

text: esophageal carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: esophagus

characteristic: organism part

text: Homo sapiens


E-MTAB-6757:Aplysina control 1h rep1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Aplysina control 1h rep1

tag: Namespace:GEOMAR Helmholtz Centre for Ocean Research

text: ArrayExpress

text: Protocols: Specimens of the Mediterranean sponge species Aplysina aerophoba and Dysidea avara were collected via SCUBA diving at the coast of Girona (Spain) in March 2015 (42.29408 N, 3.28944 E and 42.1145863 N, 3.168486 E; respectively). Collection was performed in a way that a part of the sponge remained in the substrate, allowing the regeneration of the individual. Sponges were then transported to the Experimental Aquaria Zone (ZAE) located at the Institute of Marine Science (ICM-CSIC) in Barcelona (Spain). Sponges were placed in separated 2 L aquaria in a flow-through system with direct intake of seawater and a circadian cycle of 12 h light/12 h dark using artificial light sources. Sponges were maintained at these conditions during a week for acclimation. Same experimental design was applied to each sponge species and experiments were conducted consecutively. Before the experiments, sponges were kept overnight in 1µm-filtered seawater and an additional 0.1 µm-filter was applied for 3h before the experiments. The flow-through was stopped during the experiment and small aquarium pumps were applied to ensure mixing of the water in the aquarium. Sponges were randomly assigned to each treatment (n = 5 individuals per treatment). In MAMP treatment, sponges were injected with lipopolysaccharide (LPS, source: Escherichia coli O55:B5, Sigma L2880) and peptidoglycan (source: Staphylococcus aureus, Sigma 77140) (500 µL of a final concentration 1 mg/mL in sterile artificial seawater, 1:1); whereas sponges in control treatment were injected sterile artificial seawater (500 µL). Treatments were applied by 3-5 injections in different spots. Pumping was assessed visually (i.e., open oscula). For each individual, tissue samples in the vicinities of the injection spots were collected at 1h, 3h and 5h after injection and placed in RNAlater, maintained at 4°C overnight and stored at -80°C until processed. For further analysis, 3 samples per time point and treatment were randomly selected. Eukaryotic RNA was enriched by total RNA extraction and oligodT-based poly enrichment. Briefly, cells were mechanically lysed and total RNA was extracted using the AllPrep DNA/RNA kit (Qiagen, Germany). Contaminating genomic DNA was removed using the RQ1 RNase-free DNase (Promega, USA). RNA quantity and integrity were analyzed using InvitrogenTM QubitTM fluorometer and Experion System (Bio-Rad, USA). Sponge mRNA was isolated from ca. 100 µg of total RNA (obtained from pooling 6-10 extractions from the same biological replicate) using a Poly(A) Purist MAG kit (Ambion, USA) with two round of poly(A) purification. mRNA was used as starting material. Library preparation was performed at the IKMB Kiel (Germany). The cDNA libraries were prepared using the Illumina TruSeq stranded mRNA kit following manufacturer' protocol.

text: 42.29408 N, 3.28944 E

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

characteristic: growth condition

characteristic: individual

text: Aplysina aerophoba

text: Aplysina aerophoba

characteristic: sample id

text: Aplysina aerophoba

text: Aplysina control 1h rep1


E-MTAB-6757:Aplysina control 1h rep2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GEOMAR Helmholtz Centre for Ocean Research

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6757:Aplysina control 1h rep2

characteristic: Submitter Id

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

characteristic: organism

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 1h rep2

characteristic: title


E-MTAB-6757:Aplysina control 1h rep3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6757:Aplysina control 1h rep3

text: ArrayExpress

characteristic: broker name

characteristic: description

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 1h rep3


E-MTAB-6757:Aplysina control 3h rep1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Aplysina control 3h rep1

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 3h rep1


E-MTAB-6757:Aplysina control 3h rep2

text: public

text: E-MTAB-6757:Aplysina control 3h rep2

text: ArrayExpress

text: 42.29408 N, 3.28944 E

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

characteristic: growth condition

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 3h rep2


E-MTAB-6757:Aplysina control 3h rep3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6757:Aplysina control 3h rep3

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

characteristic: individual

text: Aplysina aerophoba

text: Aplysina aerophoba

characteristic: sample id

text: Aplysina aerophoba

text: Aplysina control 3h rep3


E-MTAB-6757:Aplysina control 5h rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6757:Aplysina control 5h rep1

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 5h rep1


E-MTAB-6757:Aplysina control 5h rep2

text: public

characteristic: SRA accession

text: E-MTAB-6757:Aplysina control 5h rep2

characteristic: Submitter Id

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

characteristic: organism

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 5h rep2


E-MTAB-6757:Aplysina control 5h rep3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6757:Aplysina control 5h rep3

text: ArrayExpress

characteristic: broker name

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina control 5h rep3

characteristic: title


E-MTAB-6757:Dysidea control 1h rep1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6757:Dysidea control 1h rep1

text: ArrayExpress

characteristic: description

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 1h rep1


E-MTAB-6757:Dysidea control 1h rep2

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Dysidea control 1h rep2

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 1h rep2


E-MTAB-6757:Dysidea control 1h rep3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6757:Dysidea control 1h rep3

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

characteristic: growth condition

characteristic: individual

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 1h rep3


E-MTAB-6757:Dysidea control 3h rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6757:Dysidea control 3h rep1

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

characteristic: sample id

text: Dysidea avara

text: Dysidea control 3h rep1


E-MTAB-6757:Dysidea control 3h rep2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6757:Dysidea control 3h rep2

characteristic: Submitter Id

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 3h rep2


E-MTAB-6757:Dysidea control 3h rep3

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6757:Dysidea control 3h rep3

text: ArrayExpress

characteristic: broker name

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

characteristic: organism

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 3h rep3


E-MTAB-6757:Dysidea control 5h rep1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6757:Dysidea control 5h rep1

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 5h rep1

characteristic: title


E-MTAB-6757:Dysidea control 5h rep2

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Dysidea control 5h rep2

text: ArrayExpress

characteristic: description

text: 42.1145863 N, 3.168486 E

characteristic: environmental history

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 5h rep2


E-MTAB-6757:Dysidea control 5h rep3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6757:Dysidea control 5h rep3

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

characteristic: growth condition

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea control 5h rep3


E-MTAB-6757:Aplysina MAMPs 1h rep1

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6757:Aplysina MAMPs 1h rep1

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

characteristic: individual

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: lipopolysaccharide 1 milligram per milliliter; peptidoglycan 1 milligram per milliliter

characteristic: stimulus

text: Aplysina MAMPs 1h rep1


E-MTAB-6757:Aplysina MAMPs 1h rep2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6757:Aplysina MAMPs 1h rep2

characteristic: Submitter Id

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

characteristic: sample id

text: Aplysina aerophoba

text: Aplysina MAMPs 1h rep2


E-MTAB-6757:Aplysina MAMPs 1h rep3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6757:Aplysina MAMPs 1h rep3

text: ArrayExpress

characteristic: broker name

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

characteristic: organism

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina MAMPs 1h rep3


E-MTAB-6757:Aplysina MAMPs 3h rep1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Aplysina MAMPs 3h rep1

text: ArrayExpress

characteristic: description

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina MAMPs 3h rep1

characteristic: title


E-MTAB-6757:Aplysina MAMPs 3h rep2

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6757:Aplysina MAMPs 3h rep2

text: ArrayExpress

text: 42.29408 N, 3.28944 E

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

characteristic: growth condition

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina MAMPs 3h rep2


E-MTAB-6757:Aplysina MAMPs 3h rep3

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6757:Aplysina MAMPs 3h rep3

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

characteristic: individual

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

characteristic: stimulus

text: Aplysina MAMPs 3h rep3


E-MTAB-6757:Aplysina MAMPs 5h rep1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6757:Aplysina MAMPs 5h rep1

characteristic: Submitter Id

text: ArrayExpress

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

characteristic: sample id

text: Aplysina aerophoba

text: Aplysina MAMPs 5h rep1


E-MTAB-6757:Aplysina MAMPs 5h rep2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6757:Aplysina MAMPs 5h rep2

text: ArrayExpress

characteristic: broker name

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

characteristic: organism

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina MAMPs 5h rep2


E-MTAB-6757:Aplysina MAMPs 5h rep3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Aplysina MAMPs 5h rep3

text: ArrayExpress

characteristic: description

text: 42.29408 N, 3.28944 E

text: wild type genotype

text: sterile artificial seawater

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina aerophoba

text: Aplysina MAMPs 5h rep3

characteristic: title


E-MTAB-6757:Dysidea MAMPs 1h rep1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6757:Dysidea MAMPs 1h rep1

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

characteristic: growth condition

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea MAMPs 1h rep1


E-MTAB-6757:Dysidea MAMPs 1h rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6757:Dysidea MAMPs 1h rep2

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

characteristic: individual

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

characteristic: stimulus

text: Dysidea MAMPs 1h rep2


E-MTAB-6757:Dysidea MAMPs 3h rep1

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6757:Dysidea MAMPs 3h rep1

characteristic: Submitter Id

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

characteristic: sample id

text: Dysidea avara

text: Dysidea MAMPs 3h rep1


E-MTAB-6757:Dysidea MAMPs 3h rep2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6757:Dysidea MAMPs 3h rep2

text: ArrayExpress

characteristic: broker name

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

characteristic: organism

text: Dysidea avara

text: Dysidea avara

text: Dysidea MAMPs 3h rep2


E-MTAB-6757:Dysidea MAMPs 3h rep3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6757:Dysidea MAMPs 3h rep3

text: ArrayExpress

characteristic: description

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea MAMPs 3h rep3

characteristic: title


E-MTAB-6757:Dysidea MAMPs 5h rep1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6757:Dysidea MAMPs 5h rep1

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

characteristic: environmental history

text: wild type genotype

characteristic: genotype

text: sterile artificial seawater

characteristic: growth condition

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

text: Dysidea MAMPs 5h rep1


E-MTAB-6757:Dysidea MAMPs 5h rep2

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6757:Dysidea MAMPs 5h rep2

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

characteristic: individual

text: Dysidea avara

text: Dysidea avara

text: Dysidea avara

characteristic: stimulus

text: Dysidea MAMPs 5h rep2


E-MTAB-6757:Dysidea MAMPs 5h rep3

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6757:Dysidea MAMPs 5h rep3

characteristic: Submitter Id

text: ArrayExpress

text: 42.1145863 N, 3.168486 E

text: wild type genotype

text: sterile artificial seawater

text: Dysidea avara

text: Dysidea avara

characteristic: sample id

text: Dysidea avara

text: Dysidea MAMPs 5h rep3


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UQAM

text: public

characteristic: collection date

text: Terrestrial subsurface

characteristic: environment (biome)

text: Carbonate aquifer

characteristic: environment (feature)

text: Groundwater

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: unidentified

characteristic: organism

characteristic: pcr primers

text: unidentified

text: 16S rRNA

characteristic: target gene

text: 16S rRNA

characteristic: target subfragment

text: Bacterial diversity


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UQAM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Terrestrial subsurface

text: Carbonate aquifer

text: Rock fracture surface

text: Yes

text: Germany

text: unidentified

text: unidentified

text: 16S rRNA

text: 16S rRNA

text: Bacterial diversity

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UQAM

text: public

characteristic: Submitter Id

characteristic: collection date

text: Terrestrial subsurface

characteristic: environment (biome)

text: Carbonate aquifer

characteristic: environment (feature)

text: Rock

characteristic: environment (material)

text: Yes

text: Germany

text: unidentified

text: unidentified

text: 16S rRNA

text: 16S rRNA

text: Bacterial diversity


text: UNIVERSITY OF OXFORD

text: public

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: human patient

characteristic: isolation source

text: 51.752022, -1.257677

characteristic: lat lon

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Lawrence Berkeley National Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Lawrence Berkeley National Laboratory

text: MGRAST

characteristic: broker name

characteristic: collection time

text: AHG1 Taxonomy ID:256318

characteristic: description

text: biome

text: microbial feature

text: bodily fluid

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: 4650 Essen Lane I-10 Baton Rouge, Lousiana

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Passalid Beetle

characteristic: project name

characteristic: sample name

text: metagenome

text: illumina

characteristic: sequencing method

text: AHG1 Taxonomy ID:256318


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lawrence Berkeley National Laboratory

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: collection date

text: MG1 Taxonomy ID:256318

text: biome

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bodily fluid

characteristic: environment (material)

text: host-associated

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: Passalid Beetle

text: metagenome

text: illumina

text: MG1 Taxonomy ID:256318

characteristic: title


text: Lawrence Berkeley National Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: MGRAST

characteristic: broker name

characteristic: collection time

text: FG1 Taxonomy ID:256318

characteristic: description

text: biome

text: microbial feature

text: bodily fluid

text: host-associated

characteristic: environmental package

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: geographic location (region and locality)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Passalid Beetle

text: metagenome

text: illumina

text: FG1 Taxonomy ID:256318


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lawrence Berkeley National Laboratory

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: collection date

text: PHG1 Taxonomy ID:256318

text: biome

characteristic: environment (biome)

text: microbial feature

characteristic: environment (feature)

text: bodily fluid

characteristic: environment (material)

text: host-associated

text: USA

text: host-associated

text: metagenome

text: metagenome

text: Passalid Beetle

characteristic: project name

characteristic: sample name

text: metagenome

text: illumina

characteristic: sequencing method

text: PHG1 Taxonomy ID:256318


name: E-MTAB-6705:uninjected control pooled RNA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Texas Health Science Center at Houston School of Dentistry

unit: hour

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

characteristic: common name

text: Protocols: Fifty crispld2-MO injected and fifty uninjected zebrafish embryos were collected at the 15-somite stage (16 hpf) and the yolk was removed. The anterior third of each embryo was isolated, pooled into injected and uninjected samples, and total RNA was isolated. RNA extraction completed using Qiagen RNeasy Midi Kit Total RNA was submitted for comparative RNA-seq analysis using Cuffdiff (LC Sciences, Houston, TX, USA).

characteristic: description

text: segmentation 14-19 somites

characteristic: developmental stage

text: Danio rerio

characteristic: organism

text: Danio rerio

text: head

characteristic: organism part

text: Danio rerio

text: uninjected control pooled RNA

characteristic: title


E-MTAB-6705:zcrispld2-MO pooled RNA

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Texas Health Science Center at Houston School of Dentistry

text: public

characteristic: SRA accession

text: E-MTAB-6705:zcrispld2-MO pooled RNA

characteristic: Submitter Id

text: ArrayExpress

text: zebrafish

text: segmentation 14-19 somites

text: Danio rerio

text: Danio rerio

text: head

text: Danio rerio

text: zcrispld2-MO pooled RNA


E-MTAB-6755:Kas-2 rep 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6755:Kas-2 rep 1

tag: Namespace:Department of Biology, Healthcare & Environment. Section of Plant Physiology. Faculty of Pharmacy and Food Sciences. University of Barcelona.

text: ArrayExpress

text: thale cress

text: Protocols: Total RNA was extracted from leaves of 5-week old sulki1-8, Kas-2 and Ler/Kas-2 NIL plants grown at 14- 16 ºC. Plants were grown on soil at indicated temperatures under 12 h dark /12 h light cycles and 70 % relative humidity and 120 µmol m-2 s-1 of light intensity. Three biological replicates from at least three independent plants were collected for RNA extraction using TriZol (ThermoFischer). Libraries were prepared using the Illumina TruSeq Sample Preparation Kit according to manufacturer’s instructions.

text: rosette growth stage

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: compatible

characteristic: phenotype

text: Arabidopsis thaliana

text: Kas-2 rep 1


E-MTAB-6755:Kas-2 rep 2

text: Department of Biology, Healthcare & Environment. Section of Plant Physiology. Faculty of Pharmacy and Food Sciences. University of Barcelona.

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6755:Kas-2 rep 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: common name

text: rosette growth stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: compatible

text: Arabidopsis thaliana

text: Kas-2 rep 2


E-MTAB-6755:Kas-2 rep 3

text: public

text: E-MTAB-6755:Kas-2 rep 3

text: ArrayExpress

text: thale cress

characteristic: description

text: rosette growth stage

characteristic: developmental stage

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: compatible

text: Arabidopsis thaliana

text: Kas-2 rep 3

characteristic: title


E-MTAB-6755:NIL rep 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-6755:NIL rep 1

text: ArrayExpress

text: thale cress

text: rosette growth stage

text: Ler/Kas-2 hybrid

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: incompatible

text: Arabidopsis thaliana

text: NIL rep 1


E-MTAB-6755:NIL rep 2

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6755:NIL rep 2

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: rosette growth stage

text: Ler/Kas-2 hybrid

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: incompatible

text: Arabidopsis thaliana

text: NIL rep 2


E-MTAB-6755:NIL rep 3

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6755:NIL rep 3

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: rosette growth stage

text: Ler/Kas-2 hybrid

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: incompatible

characteristic: phenotype

text: Arabidopsis thaliana

text: NIL rep 3


E-MTAB-6755:sulki1 rep 1

text: public

text: E-MTAB-6755:sulki1 rep 1

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: rosette growth stage

characteristic: developmental stage

text: Ler/Kas-2 hybrid

text: chemically induced mutation

characteristic: genetic modification

text: sulki1-8 mutant

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: rosette leaf

characteristic: organism part

text: compatible

text: Arabidopsis thaliana

text: sulki1 rep 1


E-MTAB-6755:sulki1 rep 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-6755:sulki1 rep 2

text: ArrayExpress

text: thale cress

text: rosette growth stage

text: Ler/Kas-2 hybrid

text: chemically induced mutation

text: sulki1-8 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: compatible

text: Arabidopsis thaliana

text: sulki1 rep 2

characteristic: title


E-MTAB-6755:sulki1 rep 3

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6755:sulki1 rep 3

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: rosette growth stage

text: Ler/Kas-2 hybrid

characteristic: ecotype

text: chemically induced mutation

text: sulki1-8 mutant

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: rosette leaf

text: compatible

text: Arabidopsis thaliana

text: sulki1 rep 3


nifH gene

text: public

characteristic: INSDC status

text: nifH gene

text: metagenome

text: metagenome

text: nifH gene


text: TUM

text: public

text: DNA from pure culture of Paenibacillus polymyxa DSM292

characteristic: description

text: Paenibacillus polymyxa

text: Paenibacillus polymyxa

characteristic: strain

text: Paenibacillus polymyxa DSM292 culture


text: UNIVERSITY OF OXFORD

text: public

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapien

characteristic: host scientific name

characteristic: isolate

text: human patient

characteristic: isolation source

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHE

text: public

characteristic: SRA accession

text: invasive GBS isolate from adult patient

text: Streptococcus agalactiae

text: Streptococcus agalactiae

characteristic: title


text: TUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Normal diet

characteristic: mouse id

text: Mus musculus

characteristic: sampling time

text: Mus musculus

text: Diet-Obesity


text: TUM

text: public

characteristic: INSDC status

text: house mouse

text: High-fat diet

characteristic: description

text: Mus musculus

text: Mus musculus

text: Diet-Obesity


text: TUM

text: public

text: house mouse

text: High-fat diet and probiotic treatment

text: Mus musculus

text: Mus musculus

text: Diet-Obesity


text: TUM

text: public

text: house mouse

text: High-fat diet and prebiotic treatment

text: Mus musculus

text: Mus musculus

text: Diet-Obesity


text: TUM

text: public

text: house mouse

text: High-fat diet and synbiotic treatment

text: Mus musculus

text: Mus musculus

text: Diet-Obesity


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


text: Escherichia coli

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

characteristic: organism

text: Escherichia coli


L. donovani OE screen - DDD001000971

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Dundee

text: public

text: L. donovani OE screen - DDD001000971

tag: Namespace:University of Dundee

text: Leishmania donovani

text: Leishmania donovani

text: L. donovani OE screen - DDD00100097


status: KILLED

characteristic: External Id

text: Public Health Agency of Sweden

text: killed

characteristic: SRA accession

text: sam_FOHMtest_85397040-5643-4021-b7f9-62165dbcd53b

tag: Namespace:Public Health Agency of Sweden

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Hospital General Universitario Gregorio Maranon

characteristic: Submitter Id

text: Mycobacterium chimaera

text: Mycobacterium chimaera

characteristic: title


text: Hospital General Universitario Gregorio Maranon

text: public

characteristic: INSDC status

text: Mycobacterium chimaera

text: Mycobacterium chimaera


text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

text: public

text: tower rockcress

characteristic: common name

text: Turritis glabra

text: Turritis glabra

text: Turritis glabra DNA sample for PacBio sequencing


text: public

text: Pseudoturritis turrita

text: Pseudoturritis turrita

text: Pseudoturritis turrita DNA sample for PacBio sequencing


text: public

text: Biscutella laevigata subsp. laevigata

text: Biscutella laevigata subsp. laevigata

text: Biscutella longifolia DNA sample for Illumina sequencing


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

tag: Namespace:NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: collection date

characteristic: description

text: urban biome

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: Fecal

characteristic: host body habitat

text: C57BL/6 NOD

characteristic: host genotype

characteristic: host subject id

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: NODPAT

characteristic: project name

text: mouse gut metagenome

text: Illumina Hiseq 4000

characteristic: sequencing method

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: urban biome

text: animal-associated habitat

text: feces

text: USA

characteristic: geographic location (country and/or sea)

text: Fecal

text: C57BL/6 NOD

text: host-associated

text: metagenome

text: mouse gut metagenome

characteristic: organism

text: NODPAT

text: mouse gut metagenome

text: Illumina Hiseq 4000

characteristic: title

text: Control


text: Kilimanjaro Clinical Research Institute

text: public

text: TZA

tag: Namespace:Kilimanjaro Clinical Research Institute

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: E coli isolated from wound or pus swab from a 40 year old female patient in surgical ward in a referral hospital in Tanzania

characteristic: description

text: Escherichia

characteristic: genus

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound or pus swab

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST410/ST23 strain KCRI-10

type: AMR curated data - CABBAGE

value: ceftazidime

value: CLSI

value: disk diffusion

value: susceptible

value: Escherichia coli

value: ampicillin

value: resistant

value: chloramphenicol

value: gentamicin

value: ciprofloxacin

value: amoxicillin-clavulanic acid

value: cefazolin

value: ceftriaxone

value: nalidixic acid

value: trimethoprim-sulfamethoxazole


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

text: E coli isolated from wound or pus swab from a 33 year old male patient in surgical ward in a referral hospital in Tanzania

text: Escherichia

text: Tanzania

characteristic: geographic location (country and/or sea)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: wound or pus swab

text: 3.320 S 37.327 E

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST361/ST23 strain KCRI-115


text: Kilimanjaro Clinical Research Institute

text: public

text: TZA

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: E coli isolated from wound or pus swab from a 38 year old female patient in surgical ward in a referral hospital in Tanzania

characteristic: description

text: Escherichia

characteristic: genus

text: Tanzania

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

text: wound or pus swab

text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST73 strain KCRI-118A

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: E coli isolated from diarrhoeal stool from a 55 year old male patient in medical ward in a referral hospital in Tanzania

text: Escherichia

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: diarrhoeal stool

characteristic: isolation source

text: gastrointestinal system

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST4959/ST648 strain KCRI-119EC


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: E coli isolated from wound or pus swab from a 83 year old female patient in surgical ward in a referral hospital in Tanzania

characteristic: description

text: Escherichia

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: wound or pus swab

text: 3.320 S 37.327 E

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST372/ST350 strain KCRI-163A


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: E coli isolated from diarrhoeal stool from a 40 year old male patient in medical ward in a referral hospital in Tanzania

text: Escherichia

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

text: diarrhoeal stool

text: gastrointestinal system

text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST942/ST95 strain KCRI-21

characteristic: title


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: E coli isolated from diarrhoeal stool from a 48 year old female patient in medical ward in a referral hospital in Tanzania

text: Tanzania

text: Moshi, Kilimanjaro

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: diarrhoeal stool

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST410/ST23 strain KCRI-22


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: KCMC-KCRI

text: E coli isolated from diarrhoeal stool from a 35 year old male patient in medical ward in a referral hospital in Tanzania

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: diseased

text: Homo sapiens

text: diarrhoeal stool

text: 3.320 S 37.327 E

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST38 strain KCRI-298


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

text: E coli isolated from wound or pus swab from a 40 year old male patient in surgical ward in a referral hospital in Tanzania

text: Escherichia

characteristic: genus

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

text: wound or pus swab

text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST355/ST354 strain KCRI-30

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

text: TZA

text: KCMC-KCRI

characteristic: collection date

text: E coli isolated from wound or pus swab from a 47 year old male patient in surgical ICU in a referral hospital in Tanzania

text: Escherichia

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound or pus swab

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST224/ST155 strain KCRI-365


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

text: E coli isolated from diarrhoeal stool from a 31 year old male patient in medical ICU in a referral hospital in Tanzania

characteristic: description

text: Escherichia

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: diarrhoeal stool

text: gastrointestinal system

text: 3.320 S 37.327 E

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST405 strain KCRI-393


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

text: TZA

text: KCMC-KCRI

characteristic: collection date

text: E coli isolated from diarrhoeal stool from a 26 year old female patient in medical ward in a referral hospital in Tanzania

text: Escherichia

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

text: diarrhoeal stool

text: gastrointestinal system

text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST2332/ST648 strain KCRI-4

characteristic: title


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

text: E coli isolated from diarrhoeal stool from a 42 year old female patient in medical ward in a referral hospital in Tanzania

text: Escherichia

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: diarrhoeal stool

characteristic: isolation source

text: gastrointestinal system

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST226 strain KCRI-5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

text: TZA

text: KCMC-KCRI

characteristic: collection date

text: E coli isolated from sputum from a 46 year old male patient in medical ward in a referral hospital in Tanzania

characteristic: description

text: Escherichia

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: sputum sample

text: respiratory tract

text: 3.320 S 37.327 E

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST504/ST13 strain KCRI-521


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

text: E coli isolated from diarrhoeal stool from a 56 year old female patient in medical ward in a referral hospital in Tanzania

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

text: diarrhoeal stool

text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST95 strain KCRI-554

characteristic: title