characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 74 L

text: M1Z f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: was told by parent

text: yes

text: no


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 80 L

text: M1Z f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: was told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 99 f

text: MM f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: mom said

text: yes

text: yes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 127 f

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: mom said

text: yes

text: yes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 100 f

text: see note; Pi SX

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 144 f

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: single placenta

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 105 f

text: M1S f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: single placenta

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 123 f

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 108 f

text: M1S f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: Birth certificate

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 133 f

text: M1M2 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: appearance

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 123 f

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: male

text: appearance

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 83 L

text: M1Z f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: not collected

text: not collected

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: appearance

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 129 f

text: M1M1 f

text: Not collected

text: Missing: Not collected

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

text: not collected

text: not collected

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: NR

text: not collected

text: Not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: not collected

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: appearance

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 128 f

text: MM f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 119 f

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: black

text: not collected

text: feces

text: human gut metagenome

text: male

text: not collected

text: yes

text: no

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 132 f

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: black

text: not collected

text: feces

text: human gut metagenome

text: male

text: not collected

text: yes

text: no

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 108 f

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: not collected

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 132 f

text: M1M2 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: not collected

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: twin study in Irvine

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 133 f

text: M1M2 f

text: not collected

characteristic: alb

text: not collected

text: not collected

characteristic: alt

text: not collected

text: not collected

characteristic: ast

text: not collected

text: not collected

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: not collected

characteristic: ferritin

text: USA:CA:San Diego

text: not collected

characteristic: ggt

text: not collected

characteristic: glucose

text: not collected

characteristic: hbsag

text: not collected

characteristic: hct

text: not collected

characteristic: hdl

text: cm

text: not collected

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: not collected

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: twin study in Irvine

text: yes

text: no

text: not collected

text: not collected

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: M1M2 f

text: not collected

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: not collected

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 178 f

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: not collected

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: ND

text: cm

characteristic: hgb

text: not collected

characteristic: host age

text: human

characteristic: host common name

text: not collected

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: not collected

text: years

text: cm

characteristic: housing

characteristic: id

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: not collected

text: feces

text: human gut metagenome

text: female

text: twin study

text: yes

text: no

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 135 f

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: twin study

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 135 f

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no

text: not collected

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: not collected

text: feces

text: human gut metagenome

text: female

text: not collected

text: yes

text: no

text: not collected

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: DNA test

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: M1M1 f

text: Not collected

text: Missing: Not collected

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: not collected

text: not collected

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: not collected

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: Not collected

text: not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: not collected

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: M1M1 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

text: not collected

text: not collected

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: hispanic

text: feces

text: human gut metagenome

text: female

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: M1S f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: M2M2 f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: told by doctor

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: MS f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: M1S f

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: M1M1 f

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mzpratt

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: not collected

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: parent told them

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: not collected

text: not collected

characteristic: alb

text: not collected

text: not collected

characteristic: alt

text: not collected

text: not collected

characteristic: ast

text: not collected

text: not collected

text: not collected

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: not collected

characteristic: ferritin

text: USA:CA:San Diego

text: not collected

characteristic: ggt

text: not collected

characteristic: glucose

text: not collected

characteristic: hbsag

text: not collected

characteristic: hct

text: not collected

characteristic: hdl

text: cm

text: not collected

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: not collected

text: not collected

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: not collected

text: not collected

text: white

text: not collected

text: feces

text: human gut metagenome

text: female

text: parent told them

text: yes

text: no

text: not collected

text: not collected

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not collected

text: not collected

text: neg

characteristic: birthday

characteristic: bmi

characteristic: chol

text: not collected

characteristic: description

text: TRUE

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: groups

text: neg

characteristic: height

text: cm

text: human

characteristic: host height

text: Homo sapiens

characteristic: host subject id

characteristic: host weight

text: years

text: cm

characteristic: inr

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: not collected

text: told by parent

text: yes

text: no


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not collected

text: not collected

characteristic: alb

characteristic: alt

text: neg

characteristic: ast

text: not collected

text: not collected

text: not collected

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

characteristic: ferritin

text: USA:CA:San Diego

characteristic: ggt

characteristic: glucose

text: not collected

text: neg

characteristic: hbsag

characteristic: hct

characteristic: hdl

text: cm

characteristic: hgb

characteristic: host age

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: years

text: cm

characteristic: housing

characteristic: id

text: not collected

text: prep 4789, 4790

text: human gut metagenome

text: UCSDMI

text: TRUE

text: yes

text: white

text: not collected

text: feces

text: human gut metagenome

text: male

text: not collected

text: told by parent

text: yes

text: no


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_FOHM_c89ea686-e244-494e-b62d-30c7917bb8ce

tag: Namespace:Public Health Agency of Sweden

characteristic: Submitter Id

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_53aac823-20d3-4c5d-a0a7-ceaab549aff2

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_6ebfc026-8a41-4a0f-a319-eaf5999b4de8

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_FOHM_c98ad6b5-f52d-411e-86e9-289713ead40f

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_FOHM_7fb0e339-e502-4223-877f-0c7e5076d9d3

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_239e7231-ed60-40bb-827c-bd30f0f708af

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_c8cf378a-02ec-4a53-a5c4-cd341bdcfc30

text: FOHM

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_106a2aaf-0110-44d0-b752-d95e7ed13fc4

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_e733190e-b2b4-4492-9ba9-847124590b89

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_FOHM_41c97f62-13fb-4470-8012-88e534232afa

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_FOHM_28caea87-3a98-46be-a382-901d09e294e3

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_970688e6-4929-42f1-adfc-37e767cecd21

characteristic: Submitter Id

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_bf4f2d13-65c2-4df5-9417-dfe7950befa6

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_351a2d16-d98c-4074-b068-d1f9f6831f22

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_0a37183b-e119-4a5f-aa1b-5475c6b80dcb

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: External Id

text: MMRI

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


text: Bioinformatics Lab, Innovation Center

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Bioinformatics Lab, Innovation Center

text: human

text: The present study attempts to catalogue the taxonomic diversity of gut microbiomes sampled from an urban cohort from Ahmedabad city in Western India. The uploaded sequence data corresponds to 160 stool samples collected from 80 healthy individuals at two time-points, 60 days apart.

characteristic: description

text: Bacterial microbiome

characteristic: environment (biome)

text: Metagenome

characteristic: environment (feature)

text: faecal matter

characteristic: environment (material)

text: India

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host body mass index

unit: cm

characteristic: host height

unit: g

characteristic: host total mass

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: gut metagenome

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: A snapshot of gut microbiota of an adult urban population from Western region of India.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NOFIMA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Atlantic salmon

characteristic: common name

text: Atlantic salmon skin

text: Production facility

text: Atlantic salmon

text: Skin mucus

text: Norway

characteristic: geographic location (country and/or sea)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Salmo salar

characteristic: organism

text: ArcticFlora

text: Salmo salar

text: PacBio

text: Atlantic salmon skin

characteristic: title


text: NOFIMA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Atlantic salmon

text: Surrounding water

characteristic: description

text: Production facility

characteristic: environment (biome)

text: Atlantic salmon

characteristic: environment (feature)

text: Surrounding water

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Salmo salar

text: ArcticFlora

text: Salmo salar

text: PacBio

text: Atlantic salmon skin


text: Cell Line

characteristic: ArrayExpress-PHENOTYPE

text: Homo Sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Cell Line

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: HHS Greater Glasgow & Clyde

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:HHS Greater Glasgow & Clyde

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: faeces

characteristic: isolate

text: human faeces

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Newport

characteristic: organism

text: Isolate of Salmonella enterica from human faecal specimen

characteristic: title


text: Treponema pallidum

characteristic: ArrayExpress-Species

text: TP Vircell

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Treponema pallidum

characteristic: common name

text: Treponema pallidum

text: Treponema pallidum

text: TP Vircell

characteristic: strain


text: Treponema pallidum subsp. pallidum str. Nichols

text: Nichols Houston J

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Nichols Houston J


text: Treponema pallidum subsp. pallidum str. Chicago

text: Chicago

text: SC

text: public

text: Chicago


text: Nichols Houston E

text: SC

text: public

text: Nichols Houston E


text: Nichols Houston O

text: SC

text: public

text: Nichols Houston O


text: Treponema pallidum subsp. pallidum str. Sea 81-4

text: Seattle 81-4

text: SC

text: public

text: Seattle 81-4


text: Treponema pallidum subsp. pallidum

text: SC

text: public

text: syphilis treponeme

text: Treponema pallidum subsp. pallidum

text: Treponema pallidum subsp. pallidum


text: Treponema pallidum subsp. pallidum

text: TP11 control

text: SC

text: public

text: syphilis treponeme

text: Treponema pallidum subsp. pallidum

text: Treponema pallidum subsp. pallidum

text: TP11 control


text: Homo Sapien

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: Serratia marcescens

text: SC

text: public

text: Serratia marcescens

text: Serratia marcescens

characteristic: organism

text: Serratia marcescens

text: Serratia marcescens

characteristic: title


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: public

tag: Namespace:INSTITUTE FOR MOLECULAR INFECTION BIOLOGY

text: The genome of Trypanosoma brucei Lister 427 H3V/H4V double-KO was sequenced with SMRT sequencing technology to identify the sites of recombination in VSG Bloodstream Expression Sites.

characteristic: description

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Whole genome SMRT sequencing of the Trypanosoma brucei Lister 427 H3V/H4V dKO isolate


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH

text: house mouse

text: Bulk ATAC-Seq Isl1-positive/CD31 positive CPCs from e8.5

text: embryonic

characteristic: dev stage

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MAX PLANCK INSTITUTE FOR HEART AND LUNG RESEARCH

text: public

text: house mouse

text: embryonic

text: Mus musculus

text: Mus musculus


characteristic: External Id

text: public

text: house mouse

characteristic: common name

text: Bulk ATAC-Seq Isl1-positive/CD31 positive CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


characteristic: INSDC center name

text: public

text: house mouse

text: Bulk ATAC-Seq Isl1-positive/CD31 negative CPCs from e8.5

text: embryonic

text: Mus musculus

text: Mus musculus


characteristic: INSDC first public

text: public

text: house mouse

text: Bulk ATAC-Seq Isl1-positive/CD31 negative CPCs from e9.5

text: embryonic

text: Mus musculus

text: Mus musculus


characteristic: INSDC last update

text: public

text: house mouse

text: Single cell ATAC-Seq of Isl1-positive CPCs from

text: embryonic e8.5

text: Mus musculus

text: Mus musculus


text: University of California San Francisco

text: public

characteristic: INSDC status

tag: Namespace:University of California San Francisco

text: 10 to 16

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: skeletal muscle myoblast

characteristic: cell type

text: house mouse

text: Protocols: Cells isolated from tibialis anterior muscle of 10-16 weeks old male mice, and purified to Integrin7+; VCAM-1; Sca-1- and Lin- progenitors, and placed onto culture dishes for 2-3 days before harvest for total RNA isolation. Total RNA isolated with Trizol and sample produced with Qiagen RNeasy isolation kit Illumina TruSeq Stranded Total RNA Library Prep Human/Mouse/Rat Protocol

text: mouse 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: tibialis anterior

characteristic: organism part

text: Integrin7+; VCAM-1; Sca-1-;Lin-

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

text: University of California San Francisco

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 16

text: ArrayExpress

text: skeletal muscle myoblast

text: house mouse

characteristic: description

text: mouse 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: tibialis anterior

text: Integrin7+; VCAM-1; Sca-1-;Lin-

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of California San Francisco

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 10 to 16

text: ArrayExpress

text: skeletal muscle myoblast

text: house mouse

characteristic: common name

text: mouse 3

text: Mus musculus

text: Mus musculus

text: tibialis anterior

text: Integrin7+; VCAM-1; Sca-1-;Lin-

text: Mus musculus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: embryonic e9.5

characteristic: dev stage

text: Mus musculus

text: Mus musculus


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

tag: Namespace:VRIJE UNIVERSITEIT BRUSSEL

text: metagenome

text: metagenome

text: wooden barrel surface microbiota


text: VRIJE UNIVERSITEIT BRUSSEL

text: public

text: metagenome

text: metagenome

text: lambic beer fermentation ecosystem


E-MTAB-7166:clk-1 + 1

text: public

text: E-MTAB-7166:clk-1 + 1

tag: Namespace:KU Leuven, Centre of Microbial and Plant Genetics (CMPG)

text: ArrayExpress

characteristic: broker name

text: Protocols: Worms of the following genotypes were used in this study: 1) clk-1(qm30) mutants, 2) clk-1(qm30); clk-1(nuc) mutants (rescued with a copy of clk-1 lacking the mitochondrial targeting signal and therefore localizing to the nucleus) and 3) clk-1(qm30); clk-1(WT) mutants (rescued with a wild-type copy of clk-1). The worms were cultured at 20 °C on nematode growth medium (NGM) agar plates seeded with OP50 strain Escherichia coli. Synchronized worms were harvested and snap frozen at L4 larval stage for total RNA isolation, or polysome profiling. For isolation of total RNA, worms were homogenized with a 5 mm steel bead using a TissueLyser II (Qiagen) for 5 min at frequency of 30 times/sec in the presence of TRIzol (Invitrogen) and isolation was continued according to manufacturer’s protocol. Polysomal fractions from two experiments were pooled and mRNA was extracted using TRIzol LS (Invitrogen) according to the manufacturer’s protocol. Contaminating genomic DNA was removed using RNase-Free DNase (Qiagen) and samples were cleaned up with the RNeasy MinElute Cleanup Kit (Qiagen). Samples were processed for Illumina using the NEBNext Ultra Directional RNA Library Prep Kit (NEB #E7420) according to manufacturer’s instructions. Briefly, rRNA was depleted from total RNA using the rRNA depletion kit (NEB# E6310). After fragmentation of the rRNA reduced RNA, a cDNA synthesis was performed in order to ligate with the sequencing adapters and PCR amplification of the resulting product.

text: L4 larva

characteristic: developmental stage

text: total RNA

characteristic: fraction

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + 1


E-MTAB-7166:clk-1 + 2

characteristic: ENA-CHECKLIST

text: KU Leuven, Centre of Microbial and Plant Genetics (CMPG)

text: public

characteristic: SRA accession

text: E-MTAB-7166:clk-1 + 2

characteristic: Submitter Id

text: ArrayExpress

text: L4 larva

text: total RNA

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: strain

text: clk-1 + 2


E-MTAB-7166:clk-1 + 3

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7166:clk-1 + 3

text: ArrayExpress

characteristic: description

text: L4 larva

text: total RNA

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + 3

characteristic: title


E-MTAB-7166:clk-1 + nuc 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7166:clk-1 + nuc 1

text: ArrayExpress

text: L4 larva

text: total RNA

text: clk-1(qm30); clk-1(nuc)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + nuc 1


E-MTAB-7166:clk-1 + nuc 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7166:clk-1 + nuc 2

text: ArrayExpress

text: L4 larva

text: total RNA

text: clk-1(qm30); clk-1(nuc)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + nuc 2


E-MTAB-7166:clk-1 + nuc 3

text: public

text: E-MTAB-7166:clk-1 + nuc 3

text: ArrayExpress

characteristic: broker name

text: L4 larva

characteristic: developmental stage

text: total RNA

text: clk-1(qm30); clk-1(nuc)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + nuc 3


E-MTAB-7166:clk-1 + nuc Poly 1

text: public

text: E-MTAB-7166:clk-1 + nuc Poly 1

text: ArrayExpress

text: L4 larva

text: polysomal RNA

characteristic: fraction

text: clk-1(qm30); clk-1(nuc)

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + nuc Poly 1


E-MTAB-7166:clk-1 + nuc Poly 2

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-7166:clk-1 + nuc Poly 2

text: ArrayExpress

text: L4 larva

text: polysomal RNA

text: clk-1(qm30); clk-1(nuc)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + nuc Poly 2


E-MTAB-7166:clk-1 + nuc Poly 3

text: public

text: E-MTAB-7166:clk-1 + nuc Poly 3

characteristic: Submitter Id

text: ArrayExpress

text: L4 larva

text: polysomal RNA

text: clk-1(qm30); clk-1(nuc)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: strain

text: clk-1 + nuc Poly 3


E-MTAB-7166:clk-1 + Poly 1

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7166:clk-1 + Poly 1

text: ArrayExpress

characteristic: description

text: L4 larva

text: polysomal RNA

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + Poly 1


E-MTAB-7166:clk-1 + Poly 2

text: public

text: E-MTAB-7166:clk-1 + Poly 2

text: ArrayExpress

text: L4 larva

text: polysomal RNA

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + Poly 2

characteristic: title


E-MTAB-7166:clk-1 + Poly 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7166:clk-1 + Poly 3

text: ArrayExpress

text: L4 larva

text: polysomal RNA

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + Poly 3


E-MTAB-7166:clk-1 + WT 1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7166:clk-1 + WT 1

text: ArrayExpress

text: L4 larva

text: total RNA

text: clk-1(qm30); clk-1(WT)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + WT 1


E-MTAB-7166:clk-1 + WT 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7166:clk-1 + WT 2

text: ArrayExpress

text: L4 larva

text: total RNA

text: clk-1(qm30); clk-1(WT)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + WT 2


E-MTAB-7166:clk-1 + WT 3

text: public

text: E-MTAB-7166:clk-1 + WT 3

text: ArrayExpress

characteristic: broker name

text: L4 larva

characteristic: developmental stage

text: total RNA

text: clk-1(qm30); clk-1(WT)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + WT 3


E-MTAB-7166:clk-1 + WT Poly 1

text: public

text: E-MTAB-7166:clk-1 + WT Poly 1

text: ArrayExpress

text: L4 larva

text: polysomal RNA

characteristic: fraction

text: clk-1(qm30); clk-1(WT)

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + WT Poly 1


E-MTAB-7166:clk-1 + WT Poly 2

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-7166:clk-1 + WT Poly 2

text: ArrayExpress

text: L4 larva

text: polysomal RNA

text: clk-1(qm30); clk-1(WT)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: clk-1 + WT Poly 2


E-MTAB-7166:clk-1 + WT Poly 3

text: public

text: E-MTAB-7166:clk-1 + WT Poly 3

characteristic: Submitter Id

text: ArrayExpress

text: L4 larva

text: polysomal RNA

text: clk-1(qm30); clk-1(WT)

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: Caenorhabditis elegans

characteristic: strain

text: clk-1 + WT Poly 3


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:The Rockefeller University Laboratory of Molecular and Cellular Neuroscience

text: ArrayExpress

characteristic: cell line

text: dopaminergic neuron

characteristic: cell type

text: human

characteristic: common name

text: Protocols: The human stem cell clone H9 was grown under previously published conditions. In brief, the hESCs wild-type H9 (WA-09), SATB1KO, NURR1-GFP reporter line were maintained using E8-essential medium (Fisher Scientific) without feeder on VTA-N (Fisher Scientific) and passaged every 4-5 days by EDTA. The knockout of the SATB1 gene was performed by using a directed CRISPR/Cas9 approach in the human stem cell line H9. Stem cell clones were screened by Sanger sequencing to validate SATB1-KO. H9 clones were then differentiated into dopaminergic neurons or cortical neurons (predominantly layer V). Midbrain dopamine (mDA) differentiation from hESC was done with an optimized protocol from previously published by our group (Chambers et al., 2009; Kriks et al., 2011). Cortical differentiation from hESC was done with an optimized protocol from previously published by our group (Maroof et al., 2013). References: Chambers, S.M., Fasano, C.A., Papapetrou, E.P., Tomishima, M., Sadelain, M., and Studer, L. (2009). Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat Biotechnol 27, 275-280. Kriks, S., Shim, J.W., Piao, J., Ganat, Y.M., Wakeman, D.R., Xie, Z., Carrillo-Reid, L., Auyeung, G., Antonacci, C., Buch, A., et al. (2011). Dopamine neurons derived from human ES cells efficiently engraft in animal models of Parkinson's disease. Nature 480, 547-551. Maroof, A.M., Keros, S., Tyson, J.A., Ying, S.W., Ganat, Y.M., Merkle, F.T., Liu, B., Goulburn, A., Stanley, E.G., Elefanty, A.G., et al. (2013). Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells. Cell Stem Cell 12, 559-572. For the DNA extraction protocol for ATAC-Seq we performed the protocol which was previously published by Buenrostro et al.(2015, Curr. Protoc. Mol. Biol.). The DNA library construction protocol for ATAC-Seq was performed according to the protocol previously published by Buenrostro et al. (Buenrostro et al., 2015). Buenrostro, J.D., Wu, B., Chang, H.Y., and Greenleaf, W.J. (2015). ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide. Curr Protoc Mol Biol 109, 21 29 21-29.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Rockefeller University Laboratory of Molecular and Cellular Neuroscience

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: dopaminergic neuron

text: human

text: NURR1::GFP; SATB1 knockout

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: dopaminergic neuron

text: human

text: Protocols: The human stem cell clone H9 was grown under previously published conditions. In brief, the hESCs wild-type H9 (WA-09), SATB1KO, NURR1-GFP reporter line were maintained using E8-essential medium (Fisher Scientific) without feeder on VTA-N (Fisher Scientific) and passaged every 4-5 days by EDTA. The knockout of the SATB1 gene was performed by using a directed CRISPR/Cas9 approach in the human stem cell line H9. Stem cell clones were screened by Sanger sequencing to validate SATB1-KO. H9 clones were then differentiated into dopaminergic neurons or cortical neurons (predominantly layer V). Midbrain dopamine (mDA) differentiation from hESC was done with an optimized protocol from previously published by our group (Chambers et al., 2009; Kriks et al., 2011). Cortical differentiation from hESC was done with an optimized protocol from previously published by our group (Maroof et al., 2013). References: Chambers, S.M., Fasano, C.A., Papapetrou, E.P., Tomishima, M., Sadelain, M., and Studer, L. (2009). Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling. Nat Biotechnol 27, 275-280. Kriks, S., Shim, J.W., Piao, J., Ganat, Y.M., Wakeman, D.R., Xie, Z., Carrillo-Reid, L., Auyeung, G., Antonacci, C., Buch, A., et al. (2011). Dopamine neurons derived from human ES cells efficiently engraft in animal models of Parkinson's disease. Nature 480, 547-551. Maroof, A.M., Keros, S., Tyson, J.A., Ying, S.W., Ganat, Y.M., Merkle, F.T., Liu, B., Goulburn, A., Stanley, E.G., Elefanty, A.G., et al. (2013). Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells. Cell Stem Cell 12, 559-572. RNA was extracted using the RNeasy micro plus kit (Qiagen) according to the producers protocol. The DNA library construction protocol for RNA-Seq was performed using the Illumina TrueSeq RNA sequencing kit.

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: dopaminergic neuron

text: human

text: NURR1::GFP; SATB1 knockout

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: cell line

text: cortical neuron

characteristic: cell type

text: human

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens


text: public

text: ArrayExpress

text: cortical neuron

text: human

characteristic: common name

characteristic: description

text: NURR1::GFP; SATB1 knockout

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: dopaminergic neuron

text: human

text: Protocols: The hESCs H9 (WA-09)-NURR1-GFP reporter line was maintained using E8-essential medium (Fisher Scientific) without feeder on VTA-N (Fisher Scientific) and passaged every 4-5 days by EDTA. Midbrain dopamine (mDA) differentiation from hESC was done with an optimized protocol from previously published by our group. ChIP was performed and DNA was purified with a magnetic bead-based purification method according to the manufacturer’s protocol (MAGnify Chromatin Immunoprecipitation System-Kit, LifeTechnologies). sheared DNA was used to generate ChIP-sequencing libraries by employing Ovation Ultralow System V2 Kit (NuGEN).

text: Homo sapiens

text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens


characteristic: INSDC first public

text: public

text: ArrayExpress

text: cortical neuron

text: human

text: Homo sapiens

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text: Homo sapiens

text: embryonic stem cell

text: Homo sapiens

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text: Instituto Antofagasta

characteristic: INSDC last update

text: public

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tag: Namespace:Instituto Antofagasta

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text: river

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Chile

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: bacterium

text: Connectivity of Bacterial Communities-Case of the Loa River in the Atacama Desert

characteristic: project name

text: bacterium

text: Illumina Miseq

characteristic: sequencing method

text: Sediment and water

text: water

characteristic: water environmental package


Tedania ignis 4_MiSeq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Tedania ignis 4_MiSeq

tag: Namespace:CARDIFF SCHOOL OF BIOSCIENCES

characteristic: Submitter Id

text: Porifera

text: mangrove swamp

text: environmental material

text: USA

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Tedania ignis

text: Metagenomic analysis of Tedania ignis

text: Tedania ignis

text: Illumina

text: Preliminary analysis into the metagenome of the marine fire sponge, Tedania ignis, using assembly independent methods


Tedania ignis 4_NextSeq500

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Tedania ignis 4_NextSeq500

characteristic: collection date

text: Porifera

characteristic: environment (biome)

text: mangrove swamp

characteristic: environment (feature)

text: environmental material

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Tedania ignis

characteristic: organism

text: Metagenomic analysis of Tedania ignis

text: Tedania ignis

text: Illumina

characteristic: title


Tedania ignis 6_MiSeq

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CARDIFF SCHOOL OF BIOSCIENCES

text: public

text: Tedania ignis 6_MiSeq

text: Porifera

text: mangrove swamp

text: environmental material

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: Tedania ignis

text: Metagenomic analysis of Tedania ignis

characteristic: project name

text: Tedania ignis

text: Illumina

characteristic: sequencing method


Tedania ignis 6_NextSeq500

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CARDIFF SCHOOL OF BIOSCIENCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Tedania ignis 6_NextSeq500

characteristic: Submitter Id

text: Porifera

text: mangrove swamp

text: environmental material

text: USA

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Tedania ignis

text: Metagenomic analysis of Tedania ignis

text: Tedania ignis

text: Illumina


text: IBAHCM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: common vampire bat

characteristic: common name

text: Desmodus rotundus

text: Desmodus rotundus

text: Non-invasive swabs from vampire bats


characteristic: ENA-CHECKLIST

text: Taichi Suzuki

text: public

tag: Namespace:Taichi Suzuki

characteristic: collection date

text: western European house mouse

text: RNAlater

characteristic: description

text: intestinal sample

characteristic: environment (biome)

text: cecum

characteristic: environment (feature)

text: intestines

characteristic: environment (material)

text: Ecuador

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Mus musculus domesticus

characteristic: organism

text: Altitude and gut microbiota

text: Mus musculus domesticus

text: Illumina MiSeq 150bp PE

text: wild mouse cecal sample

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Taichi Suzuki

characteristic: INSDC center name

text: public

text: western European house mouse

text: RNAlater

text: intestinal sample

text: cecum

text: intestines

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

characteristic: investigation type

text: Mus musculus domesticus

text: Altitude and gut microbiota

characteristic: project name

text: Mus musculus domesticus

text: Illumina MiSeq 150bp PE

characteristic: sequencing method

text: wild mouse cecal sample


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: western European house mouse

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text: RNAlater

text: intestinal sample

text: cecum

text: intestines

text: Bolivia

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Mus musculus domesticus

text: Altitude and gut microbiota

text: Mus musculus domesticus

text: Illumina MiSeq 150bp PE

text: wild mouse cecal sample


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WEIZMANN INSTITUE OF SCIENCE

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

characteristic: age

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text: Descending colon of participant 5 (no intervention group)

characteristic: description

text: no intervention group - naive

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text: Homo sapiens

characteristic: organism

characteristic: participant

text: Homo sapiens

text: M

characteristic: sex

text: Descending colon

characteristic: tissue type

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Terminal ileum of participant 5 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

text: Homo sapiens

text: M

text: Terminal ileum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

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text: Stomach of participant 5 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

text: Homo sapiens

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text: Stomach


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: age

text: human

text: Duodenum of participant 5 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Duodenum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

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text: Jejunum of participant 5 (no intervention group)

characteristic: description

text: no intervention group - naive

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text: Homo sapiens

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text: Homo sapiens

text: M

text: Jejunum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

text: Cecum of participant 5 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

characteristic: participant

text: Homo sapiens

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characteristic: sex

text: Cecum

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

text: Stomach of participant 6 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Stomach

characteristic: title


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

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text: Jejunum of participant 6 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Jejunum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Duodenum of participant 7 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

text: Homo sapiens

text: F

text: Duodenum


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

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text: Jejunum of participant 7 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Jejunum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: age

text: human

text: Stomach of participant 7 (no intervention group)

characteristic: description

text: no intervention group - naive

characteristic: group

text: Homo sapiens

text: Homo sapiens

text: F

text: Stomach


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

text: Terminal ileum of participant 8 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

characteristic: organism

characteristic: participant

text: Homo sapiens

text: M

characteristic: sex

text: Terminal ileum


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

text: Cecum of participant 8 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Cecum

characteristic: tissue type


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

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text: public

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text: Descending colon of participant 8 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Descending colon

characteristic: title


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Stomach of participant 8 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Stomach


characteristic: ENA-FIRST-PUBLIC

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text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: Submitter Id

text: human

text: Duodenum of participant 8 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

text: Homo sapiens

text: M

text: Duodenum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: age

text: human

characteristic: common name

text: Jejunum of participant 8 (no intervention group)

characteristic: description

text: no intervention group - naive

text: Homo sapiens

text: Homo sapiens

text: M

text: Jejunum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

text: Stomach of participant 9 (no intervention group)

text: no intervention group - naive

characteristic: group

text: Homo sapiens

characteristic: organism

characteristic: participant

text: Homo sapiens

text: M

text: Stomach


characteristic: ENA-CHECKLIST

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

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text: no intervention group - naive

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characteristic: sex

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text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Terminal ileum of participant 9 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Terminal ileum

characteristic: tissue type


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Descending colon of participant 9 (no intervention group)

text: no intervention group - naive

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text: Descending colon

characteristic: title


characteristic: ENA-FIRST-PUBLIC

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text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: SRA accession

text: human

text: Duodenum of participant 9 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: M

text: Duodenum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: Submitter Id

characteristic: age

text: human

characteristic: common name

text: Cecum of participant 9 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Cecum


text: WEIZMANN INSTITUE OF SCIENCE

text: public

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text: Duodenum of participant 10 (no intervention group)

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text: no intervention group - naive

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text: Homo sapiens

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characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

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text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

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text: Terminal ileum of participant 11 (no intervention group)

text: no intervention group - naive

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text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Cecum of participant 11 (no intervention group)

text: no intervention group - naive

text: Homo sapiens

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text: Cecum

characteristic: tissue type


characteristic: ENA-FIRST-PUBLIC

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text: WEIZMANN INSTITUE OF SCIENCE

text: public

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text: Descending colon of participant 11 (no intervention group)

text: no intervention group - naive

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characteristic: title


text: WEIZMANN INSTITUE OF SCIENCE

text: public

characteristic: SRA accession

characteristic: Submitter Id

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text: human

text: Stomach of participant 411 (probiotics without antibiotics group - pre-treatment)

text: probiotics without antibiotics group - naive

text: Homo sapiens

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text: WEIZMANN INSTITUE OF SCIENCE

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text: Duodenum of participant 411 (probiotics without antibiotics group - pre-treatment)

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characteristic: ENA-CHECKLIST

characteristic: External Id

text: WEIZMANN INSTITUE OF SCIENCE

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text: Terminal ileum of participant 411 (probiotics without antibiotics group - pre-treatment)

text: Homo sapiens

characteristic: organism

text: Homo sapiens

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text: Terminal ileum


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC center name

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text: public

text: human

text: Cecum of participant 411 (probiotics without antibiotics group - pre-treatment)

text: Homo sapiens

characteristic: participant

text: Homo sapiens

text: M

text: Cecum


text: WEIZMANN INSTITUE OF SCIENCE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Descending colon of participant 411 (probiotics without antibiotics group - pre-treatment)

text: Homo sapiens

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text: M

characteristic: sex

text: Descending colon


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: human

text: Jejunum of participant 411 (probiotics without antibiotics group - pre-treatment)

text: Homo sapiens

text: Homo sapiens

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text: Jejunum

characteristic: tissue type