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characteristic: INSDC status

characteristic: SRA accession

text: 9464:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9465:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9466:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9467:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9468:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9469:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9470:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9471:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: surface sediment from Fram Strait (Hausgarten)

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9472:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: 5'-CCTACGGGNGGCWGCAG-3' & 5'-GACTACHVGGGTATCTAATCC-3' ; S-D-Bact-0341-b-S-17 & S-D-Bact-0785-a-A-21, Klindworth et al. 2014

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9473:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9474:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9475:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9476:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Unilever

text: public

text: human

characteristic: common name

text: oral cavity

text: tooth

text: plaque

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: tooth

characteristic: host body site

text: Healthy

characteristic: host disease status

text: human-oral

characteristic: human oral environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: 16s rRNA oral human microbiome

characteristic: project name

text: Homo sapiens

text: Illumina HiSeq

characteristic: sequencing method

characteristic: target gene

characteristic: target subfragment

text: Supragingival plaque of healthy volunteers


E-MTAB-6809:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6809:Sample 1

tag: Namespace:IBG-1, Forschungszentrum Julich GmbH

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Strain ATCC 13032, harvesting cells after cultivation and/or sorting using a FACS device. In general, counter-silencing covers mechanism that are used to overcome repressing activities of xenogeneic silencers like H-NS, Lsr2 or here CgpS. One way to achieve counter-silencing of CgpS activity is to use a truncated version of CgpS itself consisting only of the oligomerization domain (as described in Pfeifer et al., 2016, doi: 10.1093/nar/gkw692). Here we used 150 µM IPTG to overexpress the truncated version. For the counter-silencing experiments the expression of an genomically integrated eyfp was monitored by flow cytometry and sorted by FACS. The eyfp gene was cloned under a phage promoter called lys (for lysin), which can be activated by the counter-silencing mechanism (described below). For large volumes: RNeasy Kit (Qiagen, Hilden, Germany), cell disruption was performed with glass beads For small volumes (sorted samples): NucleoZol (Machery-Nagel, Düren, Germany) was used, cell disruption was performed with lysozyme + mutanlysin large sample volumes: rRNA depletion was done using Ribo-Zero rRNA Removal Kit (Gram-Positive Bacteria) (Epicentre/illumina, Munich, Germany) small volumes: a Protocol for Removal of rRNA from Small Amounts of Total RNA” from Clontech used All libraries were generated using: TruSeq Stranded emRNA Library Prep Kit (Illumina, Munich, Germany)

characteristic: description

text: IPTG-inducible expression of truncated CgpS; lys-EYFP

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

characteristic: phenotype

characteristic: replicate

text: Corynebacterium glutamicum

text: counter-silencing

characteristic: stimulus

text: ATCC 13032

characteristic: strain

text: Sample 1


E-MTAB-6809:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 2

text: ArrayExpress

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 2

characteristic: title


E-MTAB-6809:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

text: public

text: E-MTAB-6809:Sample 5

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 5


E-MTAB-6809:Sample 6

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6809:Sample 6

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 6


E-MTAB-6809:Sample 9

text: IBG-1, Forschungszentrum Julich GmbH

text: public

characteristic: SRA accession

text: E-MTAB-6809:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 9


E-MTAB-6809:Sample 10

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 10

text: ArrayExpress

characteristic: description

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

characteristic: phenotype

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 10


E-MTAB-6809:Sample 3

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 3

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

characteristic: replicate

text: Corynebacterium glutamicum

text: counter-silencing

characteristic: stimulus

text: ATCC 13032

characteristic: strain

text: Sample 3


E-MTAB-6809:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 4

text: ArrayExpress

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 4


E-MTAB-6809:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 7

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 7

characteristic: title


E-MTAB-6809:Sample 8

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6809:Sample 8

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 8


E-MTAB-6809:Sample 11

text: IBG-1, Forschungszentrum Julich GmbH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6809:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 11


E-MTAB-6809:Sample 12

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 12

text: ArrayExpress

characteristic: broker name

characteristic: description

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: unsorted

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 12


E-MTAB-6809:Sample 29

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 29

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

characteristic: phenotype

characteristic: replicate

text: Corynebacterium glutamicum

text: counter-silencing

characteristic: stimulus

text: ATCC 13032

text: Sample 29


E-MTAB-6809:Sample 30

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 30

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

characteristic: strain

text: Sample 30


E-MTAB-6809:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 13

text: ArrayExpress

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 13


E-MTAB-6809:Sample 14

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6809:Sample 14

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 14

characteristic: title


E-MTAB-6809:Sample 15

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6809:Sample 15

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 15


E-MTAB-6809:Sample 16

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 16

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 16


E-MTAB-6809:Sample 21

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 21

text: ArrayExpress

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

characteristic: phenotype

characteristic: replicate

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 21


E-MTAB-6809:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 22

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

characteristic: stimulus

text: ATCC 13032

text: Sample 22


E-MTAB-6809:Sample 23

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 23

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

characteristic: strain

text: Sample 23


E-MTAB-6809:Sample 24

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6809:Sample 24

text: ArrayExpress

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 24


E-MTAB-6809:Sample 31

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6809:Sample 31

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 31

characteristic: title


E-MTAB-6809:Sample 32

text: IBG-1, Forschungszentrum Julich GmbH

text: public

characteristic: SRA accession

text: E-MTAB-6809:Sample 32

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 32


E-MTAB-6809:Sample 17

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 17

text: ArrayExpress

characteristic: description

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

characteristic: phenotype

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 17


E-MTAB-6809:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 18

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

characteristic: replicate

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 18


E-MTAB-6809:Sample 19

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 19

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

characteristic: stimulus

text: ATCC 13032

text: Sample 19


E-MTAB-6809:Sample 20

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6809:Sample 20

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

characteristic: strain

text: Sample 20


E-MTAB-6809:Sample 25

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6809:Sample 25

text: ArrayExpress

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 25


E-MTAB-6809:Sample 26

text: IBG-1, Forschungszentrum Julich GmbH

text: public

characteristic: SRA accession

text: E-MTAB-6809:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 26

characteristic: title


E-MTAB-6809:Sample 27

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 27

text: ArrayExpress

characteristic: broker name

characteristic: description

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 27


E-MTAB-6809:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 28

text: ArrayExpress

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

characteristic: phenotype

text: Corynebacterium glutamicum

text: counter-silencing

text: ATCC 13032

text: Sample 28


E-MTAB-6809:Sample 33

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 33

text: ArrayExpress

text: Protocols: Strain ATCC 13032, harvesting cells after cultivation and/or sorting using a FACS device. First the cells were grown in BHI complex media for 5 to 6 hours. After this, the cells that were starved to iron by cultivating them under low iron conditions (1 µM) over night. In the next day the cells were used to inoculate a new culture under normal iron conditions (36 µM). In the iron shift experiments a plasmid based reporter was used. This reporter system consists of the venus gene cloned under the control of a promoter of the SOS-response gene divS. For large volumes: RNeasy Kit (Qiagen, Hilden, Germany), cell disruption was performed with glass beads For small volumes (sorted samples): NucleoZol (Machery-Nagel, Düren, Germany) was used, cell disruption was performed with lysozyme + mutanlysin large sample volumes: rRNA depletion was done using Ribo-Zero rRNA Removal Kit (Gram-Positive Bacteria) (Epicentre/illumina, Munich, Germany) small volumes: a Protocol for Removal of rRNA from Small Amounts of Total RNA” from Clontech used All libraries were generated using: TruSeq Stranded emRNA Library Prep Kit (Illumina, Munich, Germany)

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

characteristic: replicate

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 33


E-MTAB-6809:Sample 34

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6809:Sample 34

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: iron shift

characteristic: stimulus

text: ATCC 13032

text: Sample 34


E-MTAB-6809:Sample 37

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6809:Sample 37

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

characteristic: strain

text: Sample 37


E-MTAB-6809:Sample 38

text: IBG-1, Forschungszentrum Julich GmbH

text: public

characteristic: SRA accession

text: E-MTAB-6809:Sample 38

characteristic: Submitter Id

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 38


E-MTAB-6809:Sample 41

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 41

text: ArrayExpress

characteristic: broker name

characteristic: description

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 41

characteristic: title


E-MTAB-6809:Sample 42

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 42

text: ArrayExpress

text: divS-Venus

characteristic: genotype

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: negative

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 42


E-MTAB-6809:Sample 35

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 35

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

characteristic: phenotype

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 35


E-MTAB-6809:Sample 36

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6809:Sample 36

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

characteristic: replicate

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 36


E-MTAB-6809:Sample 39

text: IBG-1, Forschungszentrum Julich GmbH

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6809:Sample 39

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: iron shift

characteristic: stimulus

text: ATCC 13032

text: Sample 39


E-MTAB-6809:Sample 40

text: IBG-1, Forschungszentrum Julich GmbH

text: public

characteristic: SRA accession

text: E-MTAB-6809:Sample 40

characteristic: Submitter Id

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

characteristic: strain

text: Sample 40


E-MTAB-6809:Sample 43

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 43

text: ArrayExpress

characteristic: broker name

characteristic: description

text: divS-Venus

text: Corynebacterium glutamicum

characteristic: organism

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 43


E-MTAB-6809:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IBG-1, Forschungszentrum Julich GmbH

text: public

text: E-MTAB-6809:Sample 44

text: ArrayExpress

text: divS-Venus

text: Corynebacterium glutamicum

text: Corynebacterium glutamicum

text: positive

text: Corynebacterium glutamicum

text: iron shift

text: ATCC 13032

text: Sample 44

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


culture HP1

text: Centre of Biological Engineering

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: culture HP1

tag: Namespace:Centre of Biological Engineering

text: culture HP

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: culture HP


culture HP2

text: Centre of Biological Engineering

text: public

characteristic: INSDC status

characteristic: SRA accession

text: culture HP2

text: culture HP

text: bioreactor sludge metagenome

text: bioreactor sludge metagenome

text: culture HP


text: GSC

text: public

characteristic: Submitter Id

text: souche A120_cDNA

characteristic: clone

text: Amoebophrya sp. A120

text: Amoebophrya sp. A120


text: GSC

text: public

text: Amoebophrya sp. A120

text: Amoebophrya sp. A120


text: UNIVERSITY OF HELSINKI

text: public

tag: Namespace:UNIVERSITY OF HELSINKI

text: University of Veterinary Medicine (Vetmeduni Vienna)

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Austria

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Rectum

characteristic: isolation source

text: not available

characteristic: lat lon

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Helsinki University

text: No

text: Finland

text: gastroenteritis

characteristic: host disease

text: not provided

text: Homo sapiens

text: yes

text: Feces

text: not available

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

characteristic: title


text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Finnish Food Safety Authority Evira

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Bos taurus

text: yes

text: Feces

text: not available

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: Finnish Food Safety Authority Evira

text: No

text: Finland

text: not provided

text: Gallus gallus

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

characteristic: lat lon

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Helsinki University

text: No

text: Finland

text: not provided

text: Gallus gallus

text: yes

text: Feces

text: not available

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: no

text: Food

text: not available

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: Helsinki University

text: No

text: Finland

text: not provided

characteristic: host health state

text: Aves

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Helsinki University

text: No

text: Finland

text: not provided

text: Bos taurus

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

text: Anas platyrhynchos

text: yes

text: Feces

text: not available

text: Campylobacter jejuni

text: Campylobacter jejuni

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: National Institute for Health and Welfare

text: No

text: Burkina Faso

text: gastroenteritis

characteristic: host disease

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: National Institute of Health Doutor Ricardo Jorge INSA

text: No

text: Portugal

text: gastroenteritis

text: not provided

text: Homo sapiens

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Portugal

characteristic: geographic location (country and/or sea)

text: no

text: Food

text: not available

text: Campylobacter jejuni

text: Campylobacter jejuni

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: Austrian Agency for Health and Food Safety (AGES)

text: No

text: Austria

text: gastroenteritis

characteristic: host disease

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: No

text: Austria

text: no

text: Food

text: not available

characteristic: lat lon

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Austria

characteristic: geographic location (country and/or sea)

text: not provided

text: Amniota

text: yes

text: Feces

text: not available

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: University of the Basque Country

text: No

text: Spain

text: gastroenteritis

characteristic: host disease

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: University of the Basque Country

text: No

text: Spain

text: no

text: Food

text: not available

characteristic: lat lon

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: gastroenteritis

text: not provided

text: Homo sapiens

text: yes

text: Feces

text: not available

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: Finnish Food Safety Authority Evira

text: No

text: Finland

text: no

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Food

characteristic: isolation source

text: not available

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Finnish Food Safety Authority Evira

text: No

text: Finland

text: not provided

characteristic: host health state

text: Amniota

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Feces

text: not available

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Austria

text: no

text: Food

text: not available

characteristic: lat lon

text: Escherichia coli

characteristic: organism

text: STEC

characteristic: pathotype

text: Escherichia coli

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: No

characteristic: environmental sample

text: Austria

characteristic: geographic location (country and/or sea)

text: no

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Food

characteristic: isolation source

text: not available

text: Escherichia coli

text: STEC

text: Escherichia coli

text: O91:H rough

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collected by

text: No

text: Austria

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Feces

text: not available

text: Escherichia coli

text: STEC

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

characteristic: description

text: No

text: Austria

text: not provided

text: Amniota

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Escherichia coli

characteristic: organism

text: STEC

characteristic: pathotype

text: Escherichia coli

characteristic: serovar


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Finnish Food Safety Authority Evira

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

text: Bos taurus

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Escherichia coli

text: STEC

text: Escherichia coli

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Finnish Food Safety Authority Evira

characteristic: collected by

text: No

text: Finland

text: no

text: Farm Environment

text: not available

text: Escherichia coli

text: STEC

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

characteristic: collection date

characteristic: description

text: No

text: Finland

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Escherichia coli

characteristic: organism

text: STEC

characteristic: pathotype

text: Escherichia coli

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

text: Homo sapiens

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Escherichia coli

text: STEC

text: Escherichia coli

text: O157:H7 (non-motile)

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Finland

text: not provided

characteristic: host health state

text: Homo sapiens

text: yes

text: Feces

text: not available

text: Escherichia coli

text: STEC

text: Escherichia coli

text: O157:H- (non-motile)


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: No

text: Austria

text: gastroenteritis

characteristic: host disease

text: not provided

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Helsinki University

text: No

characteristic: environmental sample

text: Switzerland

characteristic: geographic location (country and/or sea)

text: gastroenteritis

text: not provided

text: Homo sapiens

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Switzerland

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

text: yes

text: Tonsil

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Helsinki University

text: No

text: Switzerland

text: not provided

text: Sus scrofa scrofa

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Tonsil

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Helsinki University

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

text: gastroenteritis

characteristic: host disease

text: not provided

text: Homo sapiens

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Germany

text: no

text: Food

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Helsinki University

text: No

text: Germany

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Carcass

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Helsinki University

text: No

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

text: Sus scrofa domesticus

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Heart

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Germany

text: not provided

text: Sus scrofa domesticus

text: yes

text: Liver

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Helsinki University

text: No

text: Germany

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Tonsil

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Helsinki University

text: No

characteristic: environmental sample

text: Estonia

characteristic: geographic location (country and/or sea)

text: not provided

text: Sus scrofa domesticus

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: Tonsil

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Finnish Food Safety Authority Evira

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Finland

text: no

text: Food

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Finnish Food Safety Authority Evira

text: No

text: Finland

text: no

text: Well water

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Finnish Food Safety Authority Evira

text: No

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

text: Feces

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Finnish Food Safety Authority Evira

text: No

text: Finland

text: not provided

text: Sus scrofa domesticus

text: yes

characteristic: isolate

text: Tonsil

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Finnish Food Safety Authority Evira

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Finland

text: not provided

text: Canis lupus familiaris

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Helsinki University

text: No

characteristic: environmental sample

text: Croatia

characteristic: geographic location (country and/or sea)

text: gastroenteritis

characteristic: host disease

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

text: Feces

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helsinki University

text: No

text: Italy

text: gastroenteritis

text: not provided

text: Homo sapiens

text: yes

characteristic: isolate

text: Feces

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Italy

text: not provided

text: Sus scrofa domesticus

text: yes

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: Helsinki University

text: No

characteristic: environmental sample

text: Lithuania

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Sus scrofa domesticus

characteristic: host scientific name

characteristic: host taxid

text: yes

characteristic: is the sequenced pathogen host associated?

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helsinki University

text: No

text: Latvia

text: not provided

text: Sus scrofa domesticus

text: yes

characteristic: isolate

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Portugal

text: gastroenteritis

characteristic: host disease

text: not provided

text: Homo sapiens

text: yes

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

text: Yersinia enterocolitica


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: No

characteristic: environmental sample

text: Portugal

characteristic: geographic location (country and/or sea)

text: gastroenteritis

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

text: yes

text: Feces

characteristic: isolation source

text: not available

text: Yersinia enterocolitica

characteristic: organism

text: Yersinia enterocolitica


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Helsinki University

text: No

text: Sweden

text: not provided

text: Sus scrofa domesticus

text: yes

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: not available

text: Yersinia enterocolitica

text: Yersinia enterocolitica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Helsinki University

characteristic: collected by

characteristic: collection date

characteristic: description

text: No

text: Sweden

text: gastroenteritis

characteristic: host disease

text: not provided

text: Homo sapiens

text: yes

text: Feces

text: not available

characteristic: lat lon

text: Yersinia enterocolitica

text: Yersinia enterocolitica


Founder Females A

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

text: Founder Females A

text: Drosophila simulans

characteristic: organism

text: Drosophila simulans

text: Pool-Sequencing - D. simulans population from P�_voa de Varzim, Portugal


Founder Females B

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Founder Females B

text: Drosophila simulans

text: Drosophila simulans


Evolved F2 - replicate 1

text: public

text: Evolved F2 - replicate 1

characteristic: Submitter Id

text: Drosophila simulans

text: Drosophila simulans


Evolved F59 - replicate 1

text: public

text: Evolved F59 - replicate 1

text: Drosophila simulans

text: Drosophila simulans

characteristic: title


Evolved F59 - replicate 3

characteristic: ENA-CHECKLIST

text: public

text: Evolved F59 - replicate 3

text: Drosophila simulans

text: Drosophila simulans


Evolved F59 - replicate 5

characteristic: ENA-LAST-UPDATE

text: public

text: Evolved F59 - replicate 5

text: Drosophila simulans

text: Drosophila simulans


Evolved F59 - replicate 2

characteristic: INSDC last update

text: public

text: Evolved F59 - replicate 2

text: Drosophila simulans

text: Drosophila simulans


Evolved F59 - replicate 4

text: public

characteristic: INSDC status

text: Evolved F59 - replicate 4

text: Drosophila simulans

text: Drosophila simulans


Haplotype sequencing - F67

text: public

text: Haplotype sequencing - F67

text: Drosophila simulans

text: Drosophila simulans


text: UNIVERSITY OF CHICAGO

text: public

tag: Namespace:UNIVERSITY OF CHICAGO

text: human

characteristic: environment (biome)

text: human

characteristic: environment (feature)

text: lung

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: lung metagenome

text: Bronchial metagenomics in asthma

characteristic: project name

text: lung metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: ASTHMA


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 341F-785R-cDNA-BB-1-52m_R1_clipped.fastq.bz2

characteristic: collection date

text: marine metagenome

characteristic: common name

text: cDNA

characteristic: description

text: bacterioplankton

text: water

text: Baltic Sea

characteristic: geographic location (depth)

text: metagenome

text: marine metagenome

characteristic: organism

text: Inflow

text: marine metagenome

text: Illumina

text: Inflow

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 341F-785R-cDNA-BB-1-52m_R2_clipped.fastq.bz2

characteristic: Submitter Id

text: marine metagenome

text: cDNA

text: bacterioplankton

characteristic: environment (biome)

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: marine metagenome

text: Inflow

text: marine metagenome

text: Illumina

text: Inflow

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 341F-785R-cDNA-BB-1-65m_R1_clipped.fastq.bz2

characteristic: collection date

text: marine metagenome

text: cDNA

text: bacterioplankton

text: water

text: Baltic Sea

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: Inflow

characteristic: project name

text: marine metagenome

text: Illumina

characteristic: sequencing method

text: Inflow

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 341F-785R-cDNA-BB-1-65m_R2_clipped.fastq.bz2

characteristic: Submitter Id

text: marine metagenome

characteristic: common name

text: cDNA

characteristic: description

text: bacterioplankton

text: water

text: Baltic Sea

characteristic: geographic location (depth)

text: metagenome

text: marine metagenome

characteristic: organism

text: Inflow

text: marine metagenome

text: Illumina

text: Inflow

text: water

characteristic: water environmental package


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 341F-785R-cDNA-BB-N-50m_R1_clipped.fastq.bz2

text: marine metagenome

text: cDNA

text: bacterioplankton

characteristic: environment (biome)

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: marine metagenome

text: Inflow

text: marine metagenome

text: Illumina

text: Inflow

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 341F-785R-cDNA-BB-N-50m_R2_clipped.fastq.bz2

characteristic: collection date

text: marine metagenome

text: cDNA

text: bacterioplankton

text: water

text: Baltic Sea

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: Inflow

characteristic: project name

text: marine metagenome

text: Illumina

characteristic: sequencing method

text: Inflow

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 341F-785R-cDNA-BB-N-61m_R1_clipped.fastq.bz2

characteristic: Submitter Id

text: marine metagenome

characteristic: common name

text: cDNA

characteristic: description

text: bacterioplankton

text: water

text: Baltic Sea

characteristic: geographic location (depth)

text: metagenome

text: marine metagenome

characteristic: organism

text: Inflow

text: marine metagenome

text: Illumina

text: Inflow

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: IOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 341F-785R-cDNA-BB-N-61m_R2_clipped.fastq.bz2

text: marine metagenome

text: cDNA

text: bacterioplankton

characteristic: environment (biome)

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Baltic Sea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: marine metagenome

text: Inflow

text: marine metagenome

text: Illumina

text: Inflow

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: IOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 341F-785R-cDNA-TF0109-37m_R1_clipped.fastq.bz2

characteristic: collection date

text: marine metagenome

text: cDNA

text: bacterioplankton

text: water

text: Baltic Sea

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: Inflow

characteristic: project name

text: marine metagenome

text: Illumina

characteristic: sequencing method

text: Inflow

text: water