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text: F

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characteristic: gender

text: Malawi

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text: nasal

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text: Malawi

characteristic: geographic location (longitude)

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characteristic: linker primer sequence

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PCRhivnegcon

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text: Malawi College of Medicine

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text: PCRhivnegcon

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text: negative control

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characteristic: environment (material)

text: Malawi

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text: human-associated

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characteristic: investigation type

text: CCGTCAATTCMTTTRAGT

text: human nasal/pharyngeal metagenome

characteristic: organism

text: Malawi nasopharyngeal microbiome

text: human nasal/pharyngeal metagenome

text: pyrosequencing

characteristic: sequencing method

text: negative control


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PER

characteristic: SRA accession

tag: Namespace:Harvard Medical School

characteristic: Submitter Id

text: NDM Oxford

characteristic: broker name

text: Mycobacterium

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0951. Harvard Medical School. 02-R0951

type: AMR curated data - CABBAGE

value: moxifloxacin

value: broth dilution

value: mg/L

value: Mycobacterium tuberculosis

value: capreomycin

value: linezolid

value: rifampin

value: streptomycin

value: ethambutol

value: pyrazinamide

value: ofloxacin

value: resistant

value: amikacin

value: levofloxacin

value: isoniazid

value: agar dilution

value: kanamycin

value: rifabutin

value: ethionamide

value: para-aminosalicylic acid

value: susceptible


text: 34414415; 34461978; 35780211

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Harvard Medical School

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text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0236. Harvard Medical School. 02-R0236

characteristic: title

value: Mycobacterium tuberculosis


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

characteristic: INSDC center name

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text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0749. Harvard Medical School. 03-R0749

value: broth dilution

value: mg/L

value: capreomycin


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Peru_01-R0238. Harvard Medical School. 01-R0238

value: ethambutol

value: rifampin


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

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text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009400322. Harvard Medical School. NLA009400322

value: streptomycin

value: pyrazinamide


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

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text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_01-R1468. Harvard Medical School. 01-R1468


text: 31086182; 34414415; 34461978

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0194. Harvard Medical School. 03-R0194

value: amikacin

value: ofloxacin

value: resistant


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0070. Harvard Medical School. 03-R0070

value: isoniazid

value: agar dilution


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0177. Harvard Medical School. 03-R0177

value: kanamycin


text: 31086182; 33347430; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009800926. Harvard Medical School. NLA009800926


text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000100352. Harvard Medical School. NLA000100352


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R1945. Harvard Medical School. 02-R1945


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_3017. Harvard Medical School. 02-R0984


text: 31086182; 34414415

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000100906. Harvard Medical School. NLA000100906


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_99-R545. Harvard Medical School. 99-R545


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_01-R0880. Harvard Medical School. 01-R0880


text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_3105. Harvard Medical School. 03-R0327

value: ethionamide

value: levofloxacin

value: rifabutin


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0237. Harvard Medical School. 02-R0237

value: Mycobacterium tuberculosis

value: susceptible

value: para-aminosalicylic acid


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_2556. Harvard Medical School. 01-R1305


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_04-R0438. Harvard Medical School. 04-R0438

value: broth dilution

value: mg/L

value: capreomycin


text: 31086182; 34414415; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009902322. Harvard Medical School. NLA009902322

value: streptomycin

value: rifampin

value: ethambutol


text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009601659. Harvard Medical School. NLA009601659

value: amikacin

value: pyrazinamide


text: 31086182; 34414415; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R1191. Harvard Medical School. 02-R1191

value: isoniazid


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0319. Harvard Medical School. 03-R0319

value: resistant


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_01-R0899. Harvard Medical School. 01-R0899


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000400459. Harvard Medical School. NLA000400459


text: Leishmania donovani

characteristic: ArrayExpress-Species

text: SC

text: public

text: Leishmania donovani

text: Leishmania donovani


text: unidentified

text: SC

characteristic: INSDC last update

text: public

text: unidentified

text: 16S rRNA gene amplicons

characteristic: sample description

text: unidentified


text: Cryptosporidium parvum

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Cryptosporidium parvum

text: Cryptosporidium parvum


text: 31086182; 33347430; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

characteristic: Submitter Id

text: NDM Oxford

characteristic: broker name

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R1288. Harvard Medical School. 02-R1288

value: ofloxacin

value: agar dilution

value: kanamycin


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

characteristic: genus

text: Homo sapiens

characteristic: host

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-09397. Harvard Medical School. 02-09397

value: ethionamide


characteristic: ENA-CHECKLIST

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

characteristic: isolate

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R1176. Harvard Medical School. 03-R1176

value: Mycobacterium tuberculosis


text: 34414415; 34461978; 35780211

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0759. Harvard Medical School. 02-R0759


text: 31086182; 34414415; 34461978; 35780211

characteristic: External Id

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0768. Harvard Medical School. 03-R0768

characteristic: title


text: Harvard Medical School

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000401210. Harvard Medical School. NLA000401210

value: susceptible


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Peru_02-R1589. Harvard Medical School. 02-R1589


text: FISABIO

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from control individual 1

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: Metagenomic analysis of the virome and 16S rRNA gene of feces from healthy individuals and feces and biopsies from Crohn's disease patients

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from control 1, Ctrl01_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from control individual 2

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from control 2, Ctrl02_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from control individual 3

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from control 3, Ctrl03_2


text: FISABIO

text: public

text: Fecal sample from control individual 4

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from control 4, Ctrl04_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from control individual 5

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from control 5, Ctrl05_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from control individual 6

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from control 6, Ctrl06_2


text: FISABIO

text: public

text: Fecal sample from control individual 7

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from control 7, Ctrl07_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from control individual 8

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from control 8, Ctrl08_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from control individual 9

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from control 9, Ctrl09_2


text: FISABIO

text: public

text: Fecal sample from control individual 10

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from control 10, Ctrl10_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from control individual 11

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from control 11, Ctrl11_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from control individual 12

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from control 12, Ctrl12_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 1 (active)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 1, CD01Fb_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from Crohn's disease patient 2 (active)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 2, CD02Fb_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Endoscopic biopsy from Crohn's disease patient 3 (active onset)

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: Metagenomic analysis of the virome and 16S rRNA gene of feces from healthy individuals and feces and biopsies from Crohn's disease patients

text: human gut metagenome

text: 16S rDNA amplicon from patient 3, CD03Ba_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 3 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 3, CD03Fa_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Surgical biopsy from Crohn's disease patient 3 (active pre-surgery), affected area

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 3, CD03BAc_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Surgical biopsy from Crohn's disease patient 3 (active pre-surgery), not affected area

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from patient 3, CD03BNAc_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 3 (active pre-surgery)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 3, CD03Fc_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Endoscopic biopsy from Crohn's disease patient 4 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 4, CD04Ba_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from Crohn's disease patient 4 (active onset)

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from patient 4, CD04Fa_2


text: FISABIO

text: public

text: Endoscopic biopsy from Crohn's disease patient 5 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 5, CD05Ba_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from Crohn's disease patient 5 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 5, CD05Fa_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Surgical biopsy from Crohn's disease patient 5 (active pre-surgery), affected area

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: Metagenomic analysis of the virome and 16S rRNA gene of feces from healthy individuals and feces and biopsies from Crohn's disease patients

text: human gut metagenome

text: 16S rDNA amplicon from patient 5, CD05BAc_2


text: FISABIO

text: public

text: Surgical biopsy from Crohn's disease patient 5 (active pre-surgery), not affected area

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 5, CD05BNAc_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from Crohn's disease patient 5 (active pre-surgery)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 5, CD05Fc_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Endoscopic biopsy from Crohn's disease patient 6 (active onset)

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from patient 6, CD06Ba_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 6 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 6, CD06Fa_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Endoscopic biopsy from Crohn's disease patient 7 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 7, CD07Ba_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Fecal sample from Crohn's disease patient 7 (active onset)

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from patient 7, CD07Fa_2


text: FISABIO

text: public

text: Endoscopic biopsy from Crohn's disease patient 8 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 8, CD08Ba_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from Crohn's disease patient 8 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 8, CD08Fa_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Endoscopic biopsy from Crohn's disease patient 9 (active onset)

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: Metagenomic analysis of the virome and 16S rRNA gene of feces from healthy individuals and feces and biopsies from Crohn's disease patients

text: human gut metagenome

text: 16S rDNA amplicon from patient 9, CD09Ba_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 9 (active onset)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 9, CD09Fa_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Surgical biopsy from Crohn's disease patient 10 (active pre-surgery), affected area

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 10, CD10BAc_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Surgical biopsy from Crohn's disease patient 10 (active pre-surgery), not affected area

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from patient 10, CD10BNAc_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 10 (active pre-surgery)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 10, CD10Fc_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Surgical biopsy from Crohn's disease patient 11 (active pre-surgery), affected area

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 11, CD11BAc_2

characteristic: title


text: FISABIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Surgical biopsy from Crohn's disease patient 11 (active pre-surgery), not affected area

characteristic: description

text: terrestrial biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome

text: 16S rDNA amplicon from patient 11, CD11BNAc_2


text: FISABIO

text: public

text: Fecal sample from Crohn's disease patient 11 (active pre-surgery)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

characteristic: project name

text: human gut metagenome

characteristic: sequencing method

text: 16S rDNA amplicon from patient 11, CD11Fc_2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FISABIO

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fecal sample from Crohn's disease patient 12 (active pre-surgery)

text: terrestrial biome

text: human-associated habitat

text: human-associated habitat

text: Spain

text: human-gut

text: metagenome

text: human gut metagenome

text: human gut metagenome

text: 16S rDNA amplicon from patient 12, CD12Fc_2

characteristic: title


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: PER

text: NDM Oxford

characteristic: broker name

text: Mycobacterium

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: Peru_02-R1203. Harvard Medical School. 02-R1203


text: 31086182; 33347430; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009701714. Harvard Medical School. NLA009701714

value: para-aminosalicylic acid


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0780. Harvard Medical School. 03-R0780

value: broth dilution


text: 31086182; 34414415

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009400630. Harvard Medical School. NLA009400630

value: mg/L


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000201572. Harvard Medical School. NLA000201572


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R1630. Harvard Medical School. 02-R1630


text: 31086182; 34414415; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000500952. Harvard Medical School. NLA000500952


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_2319. Harvard Medical School. 01-R0153


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R1451. Harvard Medical School. 03-R1451

value: levofloxacin

value: capreomycin

value: rifabutin


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_99-10364. Harvard Medical School. 99-10364

value: rifampin

value: ethambutol


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0911. Harvard Medical School. 02-R0911

value: pyrazinamide

value: streptomycin


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0411. Harvard Medical School. 03-R0411

value: isoniazid


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-09856. Harvard Medical School. 02-09856


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R1465. Harvard Medical School. 03-R1465

value: amikacin

value: ofloxacin

value: resistant


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R1940. Harvard Medical School. 02-R1940

value: agar dilution

value: ethionamide

value: kanamycin


text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0878. Harvard Medical School. 03-R0878

value: Mycobacterium tuberculosis


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_01-R0685. Harvard Medical School. 01-R0685


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000301546. Harvard Medical School. NLA000301546

value: broth dilution

value: para-aminosalicylic acid

value: susceptible


text: 31086182; 33347430; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000201244. Harvard Medical School. NLA000201244

value: mg/L


text: 33347430; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000000560. Harvard Medical School. NLA000000560


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R1544. Harvard Medical School. 02-R1544

value: capreomycin


text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000401230. Harvard Medical School. NLA000401230

value: rifampin


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0754. Harvard Medical School. 02-R0754

value: ethambutol


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0948. Harvard Medical School. 02-R0948

value: pyrazinamide


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000100450. Harvard Medical School. NLA000100450

value: streptomycin


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_99-R576. Harvard Medical School. 99-R576

value: isoniazid


text: 31086182; 34414415; 34461978

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0871. Harvard Medical School. 03-R0871


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000301077. Harvard Medical School. NLA000301077

value: amikacin


text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_03-R0268. Harvard Medical School. 03-R0268

value: ofloxacin


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_01-R0908. Harvard Medical School. 01-R0908

value: resistant


text: 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: PER

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Peru_02-R0099. Harvard Medical School. 02-R0099


text: 31086182; 34414415; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000601176. Harvard Medical School. NLA000601176

value: agar dilution


text: 31086182; 34414415; 34461978; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA000100143. Harvard Medical School. NLA000100143


text: 31086182; 34414415; 35780211

text: Harvard Medical School

text: public

text: NLD

text: NDM Oxford

text: Mycobacterium

text: Homo sapiens

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Netherlands_NLA009902230. Harvard Medical School. NLA009902230