text: public

text: embase-sample-22482:CSS-mRNA_12F-MK-8C-MR

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Mature B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: sex


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PwD/PhJ

characteristic: StrainOrLine

text: embase-sample-22483:CSS-mRNA_1E-MK-12b-MR1

tag: Namespace:EUROPEAN MOLECUALR BIOLOGY LABORATORY, GENOME BIOLOGY UNIT

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Protocols : Growth Protocol: Bone marrow cells were isolated from pooled femur and tibia harvested from mouse. Both ends of the bones were cut-off and bone marrow was flushed using 25-gauge needle and a 12 cc syringe filled with IMDM supplemented with 10% FBS and 2 mM EDTA, onto a 50 ml screw top Falcon tube fitted with a 70 micrometer filter (BD). Filtered cells were collected by centrifugation at 2000 rcf for 10 minutes and used for downstream analysis. To isolate spleen cells, abdominal cavity was incised and spleen was removed and placed in phosphate buffer saline (PBS, pH 7.4). Spleen was grinned between frosted glass slides and passed through 70 micrometer filter to prepare single cell suspension. Filtered cells were collected as explained above and used for downstream analysis. To purify B cell subpopulations, BM and spleen cells were subjected to flow-cytometry analysis. Briefly, RBCs lysed total bone marrow and spleen cells were stained for 30 minutes with a combination of the following monoclonal rat anti-mouse antibodies: anti-CD45 (BD Biosciences Cat# 558702 Lot# RRID: AB_1645215 or BD Biosciences Cat# 561586 Lot# RRID: AB_10896305), anti-CD19 (BD Biosciences Cat# 557655 Lot# RRID: AB_396770), anti-CD21/35 (BD Biosciences Cat# 552957 Lot# RRID: AB _394532), anti-IgM (BD Biosciences Cat# 553437 Lot# RRID: AB_394857) and anti-IgD (BD Biosciences Cat# 558597 Lot# RRID:AB_647211). Cell sorting was then performed on a FACS Aria III (Becton Dickinson, RRID: SCR_008418) with customized optical layout. The following sort parameters were used: 70 Âµm nozzle; 15,000 events/second; 35 psi. Cells were either sorted in IMDM for further assays or in Trizol (Sigma, RRID: SCR_008988) for total RNA isolation.

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Bone marrow

characteristic: organism part

characteristic: sampletype

text: Mus musculus

text: male

characteristic: title


text: EUROPEAN MOLECUALR BIOLOGY LABORATORY, GENOME BIOLOGY UNIT

text: public

text: embase-sample-22484:CSS-mRNA_12E-MK-11a-MR12

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: PrePro B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: PwD/PhJ

text: embase-sample-22485:CSS-mRNA_6E-MK-12a-MR6

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PwD/PhJ

characteristic: StrainOrLine

text: embase-sample-22486:CSS-mRNA_9E-MK-12-MR9

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male


text: public

text: embase-sample-22487:CSS-mRNA_15E-MK-11b-MR15

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Bone marrow

characteristic: organism part

characteristic: sampletype

text: Mus musculus

text: male


text: public

text: embase-sample-22488:CSS-mRNA_8F-MK-8B-MR

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Mature B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: embase-sample-24514:CSS-mRNA_B1-Jax11_M3_MR

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: embase-sample-24515:CSS-mRNA_4C2-Jax4_M3_MR

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male


text: public

characteristic: StrainOrLine

text: embase-sample-24516:CSS-mRNA_4B3-Jax4_M2_FO

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: Follicular B-cells

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

characteristic: organism part

text: Mus musculus

text: male


text: public

text: embase-sample-24517:CSS-mRNA_11B1-Jax11_M2_PP

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: PrePro B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Bone marrow

characteristic: sampletype

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: embase-sample-24518:CSS-mRNA_11A2-Jax11_M1_MR

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: embase-sample-24519:CSS-mRNA_A1-Jax11_M3_PP

text: 9-12 weeks

text: Primary B-cells

text: PrePro B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: sex


text: public

characteristic: SRA accession

characteristic: StrainOrLine

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: PrePro B-cells

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male


text: public

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Follicular B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Bone marrow

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: embase-sample-24524:mrna_11A1-Jax11_M1_PP

text: 9-12 weeks

text: Primary B-cells

text: PrePro B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

characteristic: sampletype

text: Mus musculus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 9-12 weeks

text: Primary B-cells

text: Follicular B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Spleen

text: Mus musculus

text: male

characteristic: title


text: public

characteristic: SRA accession

text: PwD/PhJ

characteristic: StrainOrLine

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: PrePro B-cells

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: sex


text: public

text: PwD/PhJ

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Marginal Zone B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: embase-sample-24535:mrna_11A3-Jax11_M1_FO

text: 9-12 weeks

text: Primary B-cells

text: Follicular B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: organism part

text: Mus musculus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: PwD/PhJ

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Bone marrow

characteristic: sampletype

text: Mus musculus

text: male


text: public

characteristic: SRA accession

characteristic: StrainOrLine

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male

characteristic: title


text: public

text: PwD/PhJ

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Follicular B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Spleen

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: embase-sample-24542:mrna_11B2-Jax11_M2_MR

text: 9-12 weeks

text: Primary B-cells

text: Mature B-cells

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Bone marrow

text: Mus musculus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: embase-sample-24587:mrna_11B3-Jax11_M2_FO

text: 9-12 weeks

text: Primary B-cells

text: Follicular B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: organism part

text: Mus musculus

text: male


text: public

characteristic: SRA accession

characteristic: StrainOrLine

text: embase-sample-24646:CSSmRNAlow_11B4-Jax11_M2_MZ

characteristic: Submitter Id

text: 9-12 weeks

text: Primary B-cells

text: Marginal Zone B-cells

text: house mouse

text: Protocols : Growth Protocol: Bone marrow cells were isolated from pooled femur and tibia harvested from mouse. Both ends of the bones were cut-off and bone marrow was flushed using 25-gauge needle and a 12 cc syringe filled with IMDM supplemented with 10% FBS and 2 mM EDTA, onto a 50 ml screw top Falcon tube fitted with a 70 micrometer filter (BD). Filtered cells were collected by centrifugation at 2000 rcf for 10 minutes and used for downstream analysis. To isolate spleen cells, abdominal cavity was incised and spleen was removed and placed in phosphate buffer saline (PBS, pH 7.4). Spleen was grinned between frosted glass slides and passed through 70 micrometer filter to prepare single cell suspension. Filtered cells were collected as explained above and used for downstream analysis. To purify B cell subpopulations, BM and spleen cells were subjected to flow-cytometry analysis. Briefly, RBCs lysed total bone marrow and spleen cells were stained for 30 minutes with a combination of the following monoclonal rat anti-mouse antibodies: anti-CD45 (BD Biosciences Cat# 558702 Lot# RRID: AB_1645215 or BD Biosciences Cat# 561586 Lot# RRID: AB_10896305), anti-CD19 (BD Biosciences Cat# 557655 Lot# RRID: AB_396770), anti-CD21/35 (BD Biosciences Cat# 552957 Lot# RRID: AB _394532), anti-IgM (BD Biosciences Cat# 553437 Lot# RRID: AB_394857) and anti-IgD (BD Biosciences Cat# 558597 Lot# RRID:AB_647211). Cell sorting was then performed on a FACS Aria III (Becton Dickinson, RRID: SCR_008418) with customized optical layout. The following sort parameters were used: 70 Âµm nozzle; 15,000 events/second; 35 psi. Cells were either sorted in IMDM for further assays or in Trizol (Sigma, RRID: SCR_008988) for total RNA isolation.

characteristic: description

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: sampletype

text: Mus musculus

text: male


text: EUROPEAN MOLECUALR BIOLOGY LABORATORY, GENOME BIOLOGY UNIT

text: public

text: embase-sample-24647:CSSmRNAlow_4A4-Jax4_M1_MZ

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Marginal Zone B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Spleen

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: embase-sample-24648:CSSmRNAlow_11A4-Jax11_M1_MZ

text: 9-12 weeks

text: Primary B-cells

text: Marginal Zone B-cells

text: house mouse

text: Mus musculus

text: Mus musculus

text: Spleen

text: Mus musculus

text: male

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: embase-sample-24649:CSSmRNAlow_D1-Jax11_M3_MZ

text: 9-12 weeks

text: B-cells

text: Marginal Zone B-cells

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

text: Mus musculus

text: male


text: public

characteristic: SRA accession

characteristic: StrainOrLine

text: embase-sample-24650:CSSmRNAlow_4C4-Jax4_M3_MZ

characteristic: Submitter Id

text: 9-12 weeks

text: B-cells

text: Marginal Zone B-cells

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: organism part

text: Mus musculus

text: male


text: public

text: embase-sample-24651:CSSmRNAlow_4B4-Jax4_M2_MZ

text: 9-12 weeks

characteristic: age

text: Primary B-cells

characteristic: cell line

text: Marginal Zone B-cells

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: Spleen

characteristic: sampletype

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TRINITY COLLEGE DUBLIN

text: public

tag: Namespace:TRINITY COLLEGE DUBLIN

text: metagenome

text: metagenome

text: EM - Parchment

characteristic: title


text: UDS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Dekkera bruxellensis, YJS5301 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5301 isolate


text: UDS

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Dekkera bruxellensis, YJS5302 isolate

text: Brettanomyces bruxellensis

characteristic: organism

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5302 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5310 isolate

characteristic: description

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5310 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5319 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5319 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5320 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5320 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5334 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5334 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5340 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5340 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5344 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5344 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5345 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5345 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5347 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5347 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5349 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5349 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5357 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5357 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5368 isolate, syn. UMY 314

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5368 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5373 isolate, syn. CBS 2269

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5373 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5382 isolate, syn. AG 2687

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5382 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5384 isolate, syn. UMY 312

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5384 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5385 isolate, syn. AG 1687

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5385 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5392 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5392 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5396 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5396 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5397 isolate, syn. CBS 929

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5397 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5398 isolate, syn. UMY 319

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5398 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5400 isolate, syn. UMY 306

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5400 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5402 isolate, syn. UMY 311

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5402 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5406 isolate, syn. UMY 324

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5406 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5407 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5407 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5408 isolate, syn. AG 1630

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5408 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5413 isolate, syn. UMY 317

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5413 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5416 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5416 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5417 isolate, syn. UMY 318

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5417 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5420 isolate, syn. UMY 334

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5420 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5422 isolate, syn. CBS 135

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5422 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5426 isolate, syn. CBS 117

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5426 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5434 isolate, syn. AG 2107

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5434 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5440 isolate, syn. CBS 136

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5440 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5445 isolate, syn. CBS 928

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5445 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5449 isolate, syn. AG 1700

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5449 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5453 isolate, syn. CBS 863

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5453 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5454 isolate, syn. AG 2995

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5454 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5456 isolate, syn. CBS 1613

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5456 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5458 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5458 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5459 isolate, syn. UMY 308

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5459 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5461 isolate, syn. CBS 864

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5461 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5463 isolate

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5463 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5469 isolate, syn. CBS 167

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5469 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5473 isolate, syn. UMY 309

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5473 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5476 isolate, syn. CBS 166

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5476 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5478 isolate, syn. UMY 310

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5478 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5479 isolate, syn. CBS 173

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5479 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5485 isolate, syn. CBS 171

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5485 isolate


text: UDS

text: public

text: Dekkera bruxellensis, YJS5487 isolate, syn. CBS 168

text: Brettanomyces bruxellensis

text: Brettanomyces bruxellensis

text: Dekkera bruxellensis, YJS5487 isolate


text: UNIBE-IG

text: public

text: dog

text: Leonberger - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


text: Oxford Nanopore Technologies

text: public

tag: Namespace:Oxford Nanopore Technologies

text: RNA standard transcripts of differing known poly(A) tail lengths (10X-100X poly(A))

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 10x


text: Oxford Nanopore Technologies

text: public

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 15x


text: Oxford Nanopore Technologies

text: public

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 30x


text: Oxford Nanopore Technologies

text: public

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 60xb


text: Oxford Nanopore Technologies

text: public

text: RNA standard transcripts of differing known poly(A) tail lengths (10X-100X poly(A)). This sample is generated from DNA template with 10 random nucleotides upstream of the 60X poly(A/T) region.

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 10N60x


text: Oxford Nanopore Technologies

text: public

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 60x


text: Oxford Nanopore Technologies

text: public

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 80x


text: Oxford Nanopore Technologies

text: public

text: synthetic RNA

text: synthetic RNA

text: Oxford Nanopore poly(A) standards: 100x


text: Lactobacillus paracasei

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Lactobacillus paracasei

text: Lactobacillus paracasei

text: Lactobacillus paracasei

characteristic: subject id


text: Elham Karimi

text: public

tag: Namespace:Elham Karimi

characteristic: collection date

text: Ocean

characteristic: environment (biome)

text: Coastal water body

characteristic: environment (feature)

text: Sea Water

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marine Sponge

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Arthrobacter sp. Alg241-R88

text: Comparative genomics of isolated sponge-associated bacteria

characteristic: project name

text: Arthrobacter sp. Alg241-R88

text: Illumina

characteristic: sequencing method

text: Arthrobacter sp. strain Alg241-R88


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Elham Karimi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Cytophagales bacterium Alg240-R148

text: Cytophagales bacterium Alg240-R148

text: Illumina

text: Cytophagales bacterium strain Alg240-R148

characteristic: title


text: Elham Karimi

text: public

characteristic: collection date

text: Ocean

characteristic: environment (biome)

text: Coastal water body

characteristic: environment (feature)

text: Sea Water

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Dietzia sp. Alg238-R159

characteristic: organism

text: Dietzia sp. Alg238-R159

text: Illumina

text: Dietzia sp. strain Alg238-R159


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Elham Karimi

text: public

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Lentilitoribacter sp. Alg239-R112

characteristic: project name

text: Lentilitoribacter sp. Alg239-R112

text: Illumina

characteristic: sequencing method

text: Lentilitoribacter sp. strain Alg239-R112


characteristic: External Id

text: Elham Karimi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Micrococcus sp. Alg238-R198

text: Micrococcus sp. Alg238-R198

text: Illumina

text: Micrococcus sp. strain Alg238-R198

characteristic: title


text: Elham Karimi

text: public

characteristic: collection date

text: Ocean

characteristic: environment (biome)

text: Coastal water body

characteristic: environment (feature)

text: Sea Water

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Rhodobacteraceae bacterium Alg238-R152

characteristic: organism

text: Rhodobacteraceae bacterium Alg238-R152

text: Illumina

text: Rhodobacteraceae bacterium strain Alg238-R152


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Elham Karimi

text: public

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Rhodobacteraceae bacterium Alg241-R94

characteristic: project name

text: Rhodobacteraceae bacterium Alg241-R94

text: Illumina

characteristic: sequencing method

text: Rhodobacteraceae bacterium strain Alg241-R94


characteristic: External Id

text: Elham Karimi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Sphingorhabdus sp. Alg239-R122

text: Sphingorhabdus sp. Alg239-R122

text: Illumina

text: Sphingorhabdus sp. strain Alg239-R122

characteristic: title


text: Elham Karimi

text: public

characteristic: collection date

text: Ocean

characteristic: environment (biome)

text: Coastal water body

characteristic: environment (feature)

text: Sea Water

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Tropicibacter sp. Alg240-R139

characteristic: organism

text: Tropicibacter sp. Alg240-R139

text: Illumina

text: Tropicibacter sp. strain Alg240-R139


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Elham Karimi

text: public

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

characteristic: host common name

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Agarivorans sp. Alg241-V36

characteristic: project name

text: Agarivorans sp. Alg241-V36

text: Illumina

characteristic: sequencing method

text: Agarivorans sp. strain Alg241-V36


characteristic: External Id

text: Elham Karimi

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ocean

text: Coastal water body

text: Sea Water

text: Portugal

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Alcanivorax sp. Alg238-V104

text: Alcanivorax sp. Alg238-V104

text: Illumina

text: Alcanivorax sp. strain Alg238-V104

characteristic: title


text: Elham Karimi

text: public

characteristic: collection date

text: Ocean

characteristic: environment (biome)

text: Coastal water body

characteristic: environment (feature)

text: Sea Water

characteristic: environment (material)

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marine Sponge

text: host-associated

text: mimarks-survey

text: Photobacterium sp. Alg240-V54

characteristic: organism

text: Photobacterium sp. Alg240-V54

text: Illumina

text: Photobacterium sp. strain Alg240-V54


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: associated samples available in study PRJEB8347

characteristic: description

text: healthy control

characteristic: diagnosis

text: human-associated habitat [ENVO:00009003]

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: Germany

text: alien

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: The salivary microbiota in colorectal cancer

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: healthy control

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: Germany

text: bugkiller

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: description

text: healthy control

characteristic: diagnosis

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: peacemaker

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: Germany

text: daisy

text: host-associated

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: tigress

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 65 year

characteristic: age

characteristic: collection date

text: associated samples available in study PRJEB6070

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: host body mass index

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 72 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 63 year

characteristic: age

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

characteristic: host taxid

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 69 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: host-associated

characteristic: host-associated environmental package

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 68 year

characteristic: age

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 64 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 62 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 63 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 61 year

characteristic: age

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 79 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 50 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 59 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 62 year

characteristic: age

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 67 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 63 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 80 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 44 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 73 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 60 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 72 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 55 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 67 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: F

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 51 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 67 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 65 year

characteristic: age

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 52 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 62 year

characteristic: age

characteristic: collection date

text: healthy control

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 45 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: F

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 79 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 64 year

characteristic: description

text: healthy control

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: F

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 64 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 69 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 68 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 62 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 76 year

characteristic: age

characteristic: collection date

text: small adenoma

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: timepoint

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMBL

text: public

text: 53 year

characteristic: description

text: colorectal cancer

characteristic: diagnosis

characteristic: environment (biome)

text: mouth environment [ENVO:08000002]

characteristic: environment (feature)

text: saliva material [ENVO:02000036]

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: M

text: metagenome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample

characteristic: title


characteristic: External Id

text: EMBL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 54 year

characteristic: age

characteristic: collection date

text: colorectal cancer

text: mouth environment [ENVO:08000002]

text: saliva material [ENVO:02000036]

text: France

characteristic: geographic location (longitude)

characteristic: host body mass index

characteristic: host subject id

text: host-associated

text: F

text: metagenome

text: human saliva metagenome

characteristic: organism

characteristic: project name

text: human saliva metagenome

text: Illumina HiSeq

text: Human saliva sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ETH

text: public

text: Lactulose

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

text: human gut metagenome

characteristic: pcr primers

text: Lactulose study

text: human gut metagenome

text: MiSeq

characteristic: sequencing method

text: 16S rRNA V4

characteristic: target subfragment

characteristic: timepoint (day)


characteristic: External Id

text: ETH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Sucrose

text: Switzerland

characteristic: geographic location (longitude)

text: human-gut

text: mimarks-survey

characteristic: investigation type

text: human gut metagenome

text: Lactulose study

text: human gut metagenome

text: MiSeq

text: 16S rRNA V4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TORONTO

text: public

tag: Namespace:UNIVERSITY OF TORONTO

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

characteristic: common name

text: Protocols: HUVECs grown to 100% confluency in 6-well plates were conditioned in 50% MLO-Y4 CM and 50% fresh HUVEC media for 24 hours. The medium was then replaced with 100% fresh HUVEC medium to ensure that there is no leftover osteocyte-secreted factor, and medium was collected from the conditioned HUVECs (HUVEC CM) after 12 hours. MDA-MB-231/1833 bone-metastatic breast cancer cells grown to confluency in 6-well plates were subsequently conditioned in 50% HUVEC CM and 50% fresh MDA-MB-231/1833 media for 24 hours. RNA content was isolated from the conditioned MDA-MB-231/1833 cells. RNA content was isolated using the RNeasy Mini Kit (74104; Qiagen, Venlo, Limburg, Netherlands) and treated with the DNA-free™ Kit (AM1906; Life Technologies). Library construction was done at The Donnelly Sequencing Centre (University of Toronto). The library was prepared with the TruSeq Stranded mRNA Library Prep Kit (Illumina®).

characteristic: description

text: breast adenocarcinoma

characteristic: disease

text: Conditioned medium (CM) from HUVECs conditioned in CM from flow-stimulated MLO-Y4 cells

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: Homo sapiens


characteristic: External Id

text: UNIVERSITY OF TORONTO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: breast adenocarcinoma

text: Conditioned medium (CM) from HUVECs conditioned in CM from static MLO-Y4 cells

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: MOUSE

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: mouse

characteristic: host scientific name

text: LUNG

characteristic: isolate

text: LAB

characteristic: isolation source

text: united kingdom

characteristic: lat lon

text: Mus musculus

text: Mus musculus

text: MiCROBIOME ANALYSIS

characteristic: title


MOCK

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IMPERIAL COLLEGE LONDON

text: public

text: MOCK

text: house mouse

characteristic: common name

text: MOUSE

characteristic: description

text: United Kingdom

text: healthy

text: mouse

text: LUNG

text: LAB

text: united kingdom

text: Mus musculus

characteristic: organism

text: Mus musculus

text: MiCROBIOME ANALYSIS


NEG

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NEG

text: house mouse

text: United Kingdom

text: healthy

text: mouse

text: LUNG

text: LAB

text: united kingdom

text: Mus musculus

text: Mus musculus

text: MiCROBIOME ANALYSIS


characteristic: ENA-CHECKLIST

text: IMPERIAL COLLEGE LONDON

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: house mouse

text: MICROBIOME

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: healthy

text: MOUSE

text: LUNG

text: LAB

text: Mus musculus

text: Mus musculus

text: MICROBIOME


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: anonymized name

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

type: AMR curated data - CABBAGE

value: ciprofloxacin

value: broth dilution

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: ceftazidime

value: trimethoprim-sulfamethoxazole

value: ceftriaxone

value: cefazolin

value: ertapenem

value: meropenem

value: amikacin

value: ampicillin-sulbactam

value: aztreonam

value: cefepime

value: gentamicin

value: tigecycline


text: Klebsiella pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: ciprofloxacin

value: resistant

value: piperacillin-tazobactam

value: ampicillin

value: nitrofurantoin


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: broth dilution

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: intermediate

value: ceftazidime


text: Klebsiella pneumoniae

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: eye and ear

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: trimethoprim-sulfamethoxazole

value: ceftriaxone

value: amikacin

value: cefazolin

value: ertapenem

value: meropenem


text: Klebsiella pneumoniae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: aztreonam

value: gentamicin

value: cefepime

value: ampicillin-sulbactam

value: ciprofloxacin


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: broth dilution

value: piperacillin-tazobactam

value: nitrofurantoin

value: ampicillin


text: Klebsiella pneumoniae

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: intermediate

value: resistant


text: Klebsiella pneumoniae

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

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text: Klebsiella

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: tigecycline

value: ceftazidime

value: amikacin

value: ceftriaxone

value: trimethoprim-sulfamethoxazole


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: meropenem

value: cefazolin

value: ertapenem

value: aztreonam

value: gentamicin


text: Klebsiella pneumoniae

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

characteristic: host

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: broth dilution

value: ampicillin-sulbactam

value: piperacillin-tazobactam

value: ciprofloxacin

value: trimethoprim-sulfobactam


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: Vitek

value: susceptible

value: Klebsiella pneumoniae

value: nitrofurantoin

value: ampicillin

value: cefepime

value: intermediate


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: resistant

value: ceftriaxone

value: amikacin

value: trimethoprim-sulfamethoxazole

value: ceftazidime

value: tigecycline


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: broth dilution

value: gentamicin

value: aztreonam

value: cefazolin

value: ertapenem

value: meropenem

value: ampicillin-sulbactam


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: Vitek

value: Klebsiella pneumoniae

value: piperacillin-tazobactam

value: ciprofloxacin

value: susceptible

value: trimethoprim-sulfobactam


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

text: BRB

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: cefepime


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: DMA

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: amikacin

value: ceftriaxone


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BLZ

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: resistant

value: ceftazidime

value: ampicillin


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: broth dilution

value: nitrofurantoin

value: intermediate

value: aztreonam


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: eye and ear

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: cefazolin

value: ampicillin-sulbactam

value: ertapenem

value: tigecycline


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: blood

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: ciprofloxacin

value: Vitek

value: Klebsiella pneumoniae

value: piperacillin-tazobactam

value: meropenem


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: cefepime

value: susceptible

value: amikacin

value: trimethoprim-sulfamethoxazole

value: ceftriaxone

value: gentamicin


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: BRB

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: ceftazidime

value: broth dilution

value: resistant

value: nitrofurantoin

value: trimethoprim-sulfobactam


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DMA

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: ampicillin

value: ertapenem

value: ampicillin-sulbactam


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: reproductive system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: Vitek

value: Klebsiella pneumoniae

value: cefazolin

value: ciprofloxacin

value: intermediate

value: tigecycline


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: reproductive system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: susceptible

value: aztreonam

value: meropenem

value: piperacillin-tazobactam

value: trimethoprim-sulfamethoxazole


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: broth dilution

value: resistant

value: gentamicin

value: amikacin

value: ceftriaxone

value: cefepime


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: Vitek

value: trimethoprim-sulfobactam

value: ceftazidime

value: ampicillin-sulbactam

value: nitrofurantoin

value: ampicillin


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: cefazolin

value: Klebsiella pneumoniae

value: intermediate

value: tigecycline

value: susceptible

value: ertapenem

value: ciprofloxacin


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BLZ

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: broth dilution

value: aztreonam

value: resistant

value: gentamicin

value: meropenem


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

text: BRB

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: reproductive system

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: Vitek

value: amikacin

value: ceftriaxone

value: piperacillin-tazobactam

value: trimethoprim-sulfobactam


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: DMA

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: ampicillin

value: cefepime

value: trimethoprim-sulfamethoxazole

value: ceftazidime


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: Klebsiella pneumoniae

value: cefazolin

value: tigecycline

value: susceptible

value: nitrofurantoin


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: aztreonam

value: broth dilution

value: intermediate

value: ciprofloxacin

value: ertapenem


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella

text: Homo sapiens

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: urinary tract

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: Vitek

value: meropenem

value: resistant

value: amikacin

value: ampicillin-sulbactam


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: ceftriaxone

value: ampicillin

value: piperacillin-tazobactam

value: trimethoprim-sulfamethoxazole

value: cefepime

value: gentamicin


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Klebsiella pneumoniae

text: Klebsiella

characteristic: genus

text: Homo sapiens

characteristic: host

text: not available

text: not available

text: skin or soft tissue

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: not available

value: susceptible

value: Klebsiella pneumoniae

value: trimethoprim-sulfobactam

value: tigecycline

value: cefazolin

value: ceftazidime


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BLZ

text: Klebsiella pneumoniae

text: Klebsiella

text: other (non-clinical isolate)

text: not available

characteristic: host status

characteristic: isolate

text: not available

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

characteristic: serovar

text: not available

characteristic: specific host

characteristic: strain

characteristic: subject id

value: broth dilution

value: Vitek

value: nitrofurantoin

value: intermediate

value: ertapenem

value: aztreonam


text: Klebsiella pneumoniae

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DMA

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella

text: Homo sapiens

text: not available

text: not available

text: reproductive system

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: not available

text: not available

characteristic: title

value: amikacin

value: ampicillin-sulbactam

value: ceftriaxone

value: ciprofloxacin