E-MTAB-6863:Sample 1

text: public

text: E-MTAB-6863:Sample 1

text: ArrayExpress

characteristic: broker name

text: not available

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: not available

characteristic: diabetes

text: liver disease

characteristic: disease

text: early

characteristic: disease staging

text: not available

characteristic: elf score

text: not available

characteristic: ethnic group

text: METAVIR fibrosis score 0

characteristic: fibrosis stage

text: Hepatitis C virus genotype 3

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex

text: not available

characteristic: smoker

text: no steatosis

characteristic: steatosis

text: Sample 1

characteristic: title


E-MTAB-6863:Sample 7

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 7

tag: Namespace:Institute for Molecular Bioscience (IMB) and IMB Centre for Inflammation and Disease Research, The University of Queensland

characteristic: Submitter Id

unit: year

characteristic: age

unit: gram per week

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

characteristic: body mass index

text: ArrayExpress

text: not available

text: human

text: Protocols: Liver tissue and serum were collected at the time of liver biopsy following an overnight fast for 8-10 hours and stored at -80˚C. Diagnosis of liver disease was based on standard biochemical and serological assays and consensus histological assessment of the liver biopsy by 2 blinded, experienced pathologists. Fibrosis is measured using the modified METAVIR scoring system, where 0 is no fibrosis, 1 is portal fibrosis without septa, 2 is portal fibrosis with few septa, 3 is portal fibrosis with numerous septa without cirrhosis and 4 is cirrhosis. Alcohol code is based on the following code (from in house lab classifications): 0 = NONE; 1 = >0 - RWA (recommended weekly allowance) (140g/wk women, 210g/wk Men); 2 = > RWA for sex to <350g/wk women, <420g/wk Men; 3 = ≥350g/wk women, ≥420g/wk Men; Total RNA was isolated from human liver biopsy tissue using TRI Reagent (Sigma Aldrich), as per the manufacturer’s instructions. RNA quality was assessed using the Agilent 2100 BioAnalyser and samples with an RNA integrity number ≥ 6.0 were included for RNA-sequencing. Up to 1 µg of RNA was used to synthesize mRNA libraries using the TruSeq Stranded Total RNA (Ribo-Zero GOLD) library preparation kit (Illumina), as per the manufacturer’s instructions.

text: non-diabetic

text: liver disease

text: early

text: enhanced liver fibrosis score 8.5

text: Caucasian

text: METAVIR fibrosis score 1

text: Hepatitis C virus genotype 3

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

text: current smoker

text: steatosis

text: Sample 7


E-MTAB-6863:Sample 10

text: Institute for Molecular Bioscience (IMB) and IMB Centre for Inflammation and Disease Research, The University of Queensland

text: public

text: E-MTAB-6863:Sample 10

text: ArrayExpress

characteristic: broker name

text: 9 cigarette packs per year

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: non-diabetic

characteristic: diabetes

text: liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 8.05

characteristic: elf score

text: Caucasian

characteristic: ethnic group

text: METAVIR fibrosis score 2

characteristic: fibrosis stage

text: Hepatitis C virus genotype 3

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex

text: current smoker

characteristic: smoker

text: steatosis

characteristic: steatosis

text: Sample 10

characteristic: title


E-MTAB-6863:Sample 47

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 47

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

characteristic: body mass index

text: ArrayExpress

text: not available

text: human

text: not available

text: liver disease

text: early

text: not available

text: not available

text: METAVIR fibrosis score 0

text: Hepatitis C virus genotype 3

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

text: not available

text: no steatosis

text: Sample 47


E-MTAB-6863:Sample 29

text: public

text: E-MTAB-6863:Sample 29

text: ArrayExpress

characteristic: broker name

text: not available

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: not available

characteristic: diabetes

text: liver disease

characteristic: disease

text: early

characteristic: disease staging

text: not available

characteristic: elf score

text: not available

characteristic: ethnic group

text: METAVIR fibrosis score 1

characteristic: fibrosis stage

text: Hepatitis C virus genotype 3

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: sex

text: not available

characteristic: smoker

text: no steatosis

characteristic: steatosis

text: Sample 29

characteristic: title


E-MTAB-6863:Sample 63

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 63

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

characteristic: body mass index

text: ArrayExpress

text: 3 cigarette packs per year

text: human

text: non-diabetic

text: liver disease

text: advanced

text: enhanced liver fibrosis score 9.72

text: Caucasian

text: METAVIR fibrosis score 3

text: Hepatitis C virus genotype 3

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

text: current smoker

text: steatosis

text: Sample 63


E-MTAB-6863:Sample 3

text: public

text: E-MTAB-6863:Sample 3

text: ArrayExpress

characteristic: broker name

text: 0 cigarette packs per year

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: non-diabetic

characteristic: diabetes

text: liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 8.22

characteristic: elf score

text: Caucasian

characteristic: ethnic group

text: METAVIR fibrosis score 0

characteristic: fibrosis stage

text: Hepatitis C virus genotype 4

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

characteristic: sex

text: non smoker

characteristic: smoker

text: steatosis

characteristic: steatosis

text: Sample 3

characteristic: title


E-MTAB-6863:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 9

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

characteristic: body mass index

text: ArrayExpress

text: 0 cigarette packs per year

text: human

text: type II diabetes mellitus

text: non-alcoholic fatty liver disease

text: early

text: enhanced liver fibrosis score 8.85

text: Caucasian

text: METAVIR fibrosis score 1

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

text: non smoker

text: steatosis

text: Sample 9


E-MTAB-6863:Sample 28

text: public

text: E-MTAB-6863:Sample 28

text: ArrayExpress

characteristic: broker name

text: 13 cigarette packs per year

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: type II diabetes mellitus

characteristic: diabetes

text: non-alcoholic fatty liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 8.32

characteristic: elf score

text: Hispanic

characteristic: ethnic group

text: METAVIR fibrosis score 0

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

characteristic: sex

text: ex-smoker

characteristic: smoker

text: steatosis

characteristic: steatosis

text: Sample 28

characteristic: title


E-MTAB-6863:Sample 32

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 32

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

characteristic: body mass index

text: ArrayExpress

text: 15 cigarette packs per year

text: human

text: non-diabetic

text: non-alcoholic fatty liver disease

text: early

text: enhanced liver fibrosis score 8.37

text: Caucasian

text: METAVIR fibrosis score 1

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

text: current smoker

text: steatosis

text: Sample 32


E-MTAB-6863:Sample 34

text: public

text: E-MTAB-6863:Sample 34

text: ArrayExpress

characteristic: broker name

text: 17 cigarette packs per year

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: non-diabetic

characteristic: diabetes

text: non-alcoholic fatty liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 9.02

characteristic: elf score

text: Caucasian

characteristic: ethnic group

text: METAVIR fibrosis score 1

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: current smoker

characteristic: smoker

text: steatosis

characteristic: steatosis

text: Sample 34


E-MTAB-6863:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 22

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

text: ArrayExpress

text: 25 cigarette packs per year

text: human

text: type II diabetes mellitus

text: non-alcoholic fatty liver disease

text: advanced

text: enhanced liver fibrosis score 10.23

text: Caucasian

text: METAVIR fibrosis score 4

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: female

text: ex-smoker

text: steatosis

text: Sample 22

characteristic: title


E-MTAB-6863:Sample 39

text: public

text: E-MTAB-6863:Sample 39

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: 30 cigarette packs per year

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: non-diabetic

characteristic: diabetes

text: non-alcoholic fatty liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 8.73

characteristic: elf score

text: Caucasian

characteristic: ethnic group

text: METAVIR fibrosis score 2

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: current smoker

characteristic: smoker

text: steatosis

text: Sample 39


E-MTAB-6863:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 17

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

text: ArrayExpress

text: not available

text: human

text: not available

text: non-alcoholic fatty liver disease

text: advanced

text: not available

text: not available

text: METAVIR fibrosis score 3

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

text: not available

text: steatosis

characteristic: steatosis

text: Sample 17


E-MTAB-6863:Sample 52

text: public

text: E-MTAB-6863:Sample 52

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: not available

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: not available

characteristic: diabetes

text: non-alcoholic fatty liver disease

characteristic: disease

text: early

characteristic: disease staging

text: not available

characteristic: elf score

text: not available

characteristic: ethnic group

text: METAVIR fibrosis score 1

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: not available

text: steatosis

text: Sample 52

characteristic: title


E-MTAB-6863:Sample 44

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 44

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

text: ArrayExpress

text: not available

text: human

text: not available

text: non-alcoholic fatty liver disease

text: advanced

text: not available

text: not available

text: METAVIR fibrosis score 3

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

text: not available

characteristic: smoker

text: steatosis

text: Sample 44


E-MTAB-6863:Sample 33

text: public

text: E-MTAB-6863:Sample 33

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: 0 cigarette packs per year

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: non-diabetic

characteristic: diabetes

text: non-alcoholic fatty liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 8.43

characteristic: elf score

text: Caucasian

characteristic: ethnic group

text: METAVIR fibrosis score 1

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: non smoker

text: steatosis

characteristic: steatosis

text: Sample 33


E-MTAB-6863:Sample 46

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 46

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

text: ArrayExpress

text: 0 cigarette packs per year

text: human

text: type II diabetes mellitus

text: non-alcoholic fatty liver disease

text: advanced

text: enhanced liver fibrosis score 11.73

text: Caucasian

text: METAVIR fibrosis score 4

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

text: non smoker

text: steatosis

text: Sample 46

characteristic: title


E-MTAB-6863:Sample 4

text: public

text: E-MTAB-6863:Sample 4

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: not available

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: not available

characteristic: diabetes

text: non-alcoholic fatty liver disease

characteristic: disease

text: early

characteristic: disease staging

text: enhanced liver fibrosis score 8.98

characteristic: elf score

text: not available

characteristic: ethnic group

text: METAVIR fibrosis score 0

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: not available

characteristic: smoker

text: steatosis

text: Sample 4


E-MTAB-6863:Sample 58

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6863:Sample 58

characteristic: Submitter Id

characteristic: age

characteristic: alcohol consumption

characteristic: alcohol consumption measurement

characteristic: bmi code

text: ArrayExpress

text: not available

text: human

text: non-diabetic

text: alcoholic liver disease

text: early

text: enhanced liver fibrosis score 8.43

text: Caucasian

text: METAVIR fibrosis score 2

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens

text: male

text: not available

text: steatosis

characteristic: steatosis

text: Sample 58


E-MTAB-6863:Sample 48

text: public

text: E-MTAB-6863:Sample 48

characteristic: body mass index

text: ArrayExpress

characteristic: broker name

text: not available

characteristic: cigarette packs per year

text: human

characteristic: common name

characteristic: description

text: not available

characteristic: diabetes

text: alcoholic liver disease

characteristic: disease

text: early

characteristic: disease staging

text: not available

characteristic: elf score

text: not available

characteristic: ethnic group

text: METAVIR fibrosis score 0

characteristic: fibrosis stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: not available

text: steatosis

text: Sample 48

characteristic: title


Mock 5_Run1.T1.PCRa.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA (INRA Versailles)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mock 5_Run1.T1.PCRa.1

tag: Namespace:INRA (INRA Versailles)

characteristic: Submitter Id

text: France

characteristic: country

text: synthetic metagenome

text: synthetic metagenome

text: Mock 5 constituted DNA from fungal strains in equimolar concentration


Mock 5_Run1.T1.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 5_Run1.T1.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 5_Run1.T1.PCRa.2

text: INRA (INRA Versailles)

text: public

text: Mock 5_Run1.T1.PCRa.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 5_Run1.T1.PCRc.2

text: INRA (INRA Versailles)

text: public

text: Mock 5_Run1.T1.PCRc.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 5_Run2.T1.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 5_Run2.T1.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 5_Run2.T1.2

text: INRA (INRA Versailles)

text: public

text: Mock 5_Run2.T1.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 5_Run2.T1.3

text: INRA (INRA Versailles)

text: public

text: Mock 5_Run2.T1.3

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 1_Run1.T2.PCRa.1

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run1.T2.PCRa.1

text: France

text: synthetic metagenome

text: synthetic metagenome

text: Mock 1constituted DNA from fungal strains in equimolar concentration


Mock 1_Run1.T2.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run1.T2.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome

text: Mock 1 constituted DNA from fungal strains in equimolar concentration


Mock 1_Run1.T2.PCRa.2

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run1.T2.PCRa.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 1_Run1.T2.PCRc.2

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run1.T2.PCRc.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 1_Run2.T2.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run2.T2.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 1_Run2.T2.2

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run2.T2.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 1_Run2.T2.3

text: INRA (INRA Versailles)

text: public

text: Mock 1_Run2.T2.3

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 2_Run1.T3.PCRa.1

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run1.T3.PCRa.1

text: France

text: synthetic metagenome

text: synthetic metagenome

text: Mock 2 constituted DNA from fungal strains in equimolar concentration


Mock 2_Run1.T3.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run1.T3.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 2_Run1.T3.PCRa.2

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run1.T3.PCRa.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 2_Run1.T3.PCRc.2

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run1.T3.PCRc.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 2_Run2.T3.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run2.T3.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 2_Run2.T3.2

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run2.T3.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 2_Run2.T3.3

text: INRA (INRA Versailles)

text: public

text: Mock 2_Run2.T3.3

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 3_Run1.T4.PCRa.1

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run1.T4.PCRa.1

text: France

text: synthetic metagenome

text: synthetic metagenome

text: Mock 3 constituted DNA from fungal strains in equimolar concentration


Mock 3_Run1.T4.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run1.T4.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 3_Run1.T4.PCRa.2

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run1.T4.PCRa.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 3_Run1.T4.PCRc.2

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run1.T4.PCRc.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 3_Run2.T4.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run2.T4.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 3_Run2.T4.2

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run2.T4.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 3_Run2.T4.3

text: INRA (INRA Versailles)

text: public

text: Mock 3_Run2.T4.3

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 4_Run1.T5.PCRa.1

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run1.T5.PCRa.1

text: France

text: synthetic metagenome

text: synthetic metagenome

text: Mock 4 constituted DNA from fungal strains in equimolar concentration


Mock 4_Run1.T5.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run1.T5.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 4_Run1.T5.PCRa.2

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run1.T5.PCRa.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 4_Run1.T5.PCRc.2

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run1.T5.PCRc.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 4_Run2.T5.PCRc.1

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run2.T5.PCRc.1

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 4_Run2.T5.2

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run2.T5.2

text: France

text: synthetic metagenome

text: synthetic metagenome


Mock 4_Run2.T5.3

text: INRA (INRA Versailles)

text: public

text: Mock 4_Run2.T5.3

text: France

text: synthetic metagenome

text: synthetic metagenome


text: INRA (INRA Versailles)

text: public

text: durum wheat

characteristic: common name

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: bread wheat

text: France

text: Triticum aestivum

text: Triticum aestivum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run1.CG09.G10.P1.L1.T1.PCRa.1

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run1.CG09.G10.P1.L1.T1.PCRb.1

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run1.CG09.G10.P1.L1.T1.PCRd.1

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run1.Gal.G10.P1.L1.T1.PCRa.1

text: bread wheat

text: France

text: Triticum aestivum

text: Triticum aestivum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run1.Gal.G10.P1.L1.T1.PCRb.1

text: bread wheat

text: France

text: Triticum aestivum

text: Triticum aestivum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run1.Gal.G10.P1.L1.T1.PCRd.1

text: bread wheat

text: France

text: Triticum aestivum

text: Triticum aestivum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run2.CG09.G10.P1.L1.T1.PCRd.1

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: G10_P1_L1_T1_Run2.Gal.G10.P1.L1.T1.PCRd.1

text: bread wheat

text: France

text: Triticum aestivum

text: Triticum aestivum

text: Artificially infected grains


text: INRA (INRA Versailles)

text: public

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Field samples


text: INRA (INRA Versailles)

text: public

text: domesticated barley

text: France

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: Field samples


text: INRA (INRA Versailles)

text: public

text: bread wheat

text: France

text: Triticum aestivum

text: Triticum aestivum

text: Field samples


Control

text: INRA (INRA Versailles)

text: public

text: Control

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 100

text: INRA (INRA Versailles)

text: public

text: F8 100

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 200

text: INRA (INRA Versailles)

text: public

text: F8 200

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 500

text: INRA (INRA Versailles)

text: public

text: F8 500

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 1000

text: INRA (INRA Versailles)

text: public

text: F8 1000

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 2000

text: INRA (INRA Versailles)

text: public

text: F8 2000

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 5000

text: INRA (INRA Versailles)

text: public

text: F8 5000

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


F8 10000

text: INRA (INRA Versailles)

text: public

text: F8 10000

text: durum wheat

text: France

text: Triticum turgidum subsp. durum

text: Triticum turgidum subsp. durum

text: Artificially infected grains


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_c4c6e81c-de60-4253-91b4-213e7e81163f

tag: Namespace:Public Health Agency of Sweden

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_ed01875e-a217-4c13-bb11-88518cea0607

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: External Id

text: GSK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: T cell

characteristic: cell type

text: human

text: Protocols: According to supplier recommendations Dynabeads human T-activator CD4/CD28 beads (Invitrogen, UK) at a ratio of 1 bead:3 cells for 48 hours Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

characteristic: description

text: Sezary's disease

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: GSK

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Jurkat E6.1

text: T cell

text: human

characteristic: common name

text: childhood T acute lymphoblastic leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GSK

text: public

text: ArrayExpress

text: T cell

text: human

text: Protocols: According to supplier recommendations Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: Sezary's disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


characteristic: External Id

text: GSK

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Jurkat E6.1

text: T cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


text: public

characteristic: INSDC status

tag: Namespace:Max Planck Institute for Molecular Genetics

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-FLAG antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1


text: Max Planck Institute for Molecular Genetics

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-FLAG antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP control using unspecific IgG from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP control using unspecific IgG from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP input gDNA control from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1 (input for FLAG ChIP)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP input gDNA control from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2 (input for FLAG ChIP)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-FLAG antibody from HAL-01 wild-type cells, replicate 1


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-FLAG antibody from HAL-01 wild-type cells, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP control using unspecific IgG from HAL-01 wild-type cells, replicate 1


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP control using unspecific IgG from HAL-01 wild-type cells, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP input gDNA control from HAL-01 wild-type cells, replicate 1 (input for FLAG ChIP)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP input gDNA control from HAL-01 wild-type cells, replicate 2 (input for FLAG ChIP)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K27ac antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K27ac antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K27me3 antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K27me3 antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K4me1 antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1


text: Max Planck Institute for Molecular Genetics

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K4me1 antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K4me3 antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP using anti-H3K4me3 antibody from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP input gDNA control from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 1 (input for histone mark ChIP)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: ChIP input gDNA control from HAL-01 cells expressing TCF3-HLF-FLAG, replicate 2 (input for histone mark ChIP)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 3 after transduction with sgRNA targeting HLF(1)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 5 after transduction with sgRNA targeting HLF(1)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 3 after transduction with sgRNA targeting HLF(4)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 5 after transduction with sgRNA targeting HLF(4)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 3 after transfection with scrambled control sgRNA SCR(1)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 5 after transfection with scrambled control sgRNA SCR(1)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 3 after transfection with scrambled control sgRNA SCR(2)


text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: RNA from HAL-01 cells expressing TCF3-HLF-FLAG from day 5 after transfection with scrambled control sgRNA SCR(2)


text: metagenome

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: metagenome

text: metagenome

text: metagenome


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: ZMBH

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Human blood Globin-clear Illumina, TruSeq Stranded Total RNA LT Sample Prep Kit RS-122-2301

characteristic: description

text: adult

characteristic: developmental stage

text: human african trypanosomiasis

characteristic: disease

characteristic: individual

text: Trypanosoma brucei rhodesiense

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens


inoculum sediment slurry

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UNIVERSITY

text: public

characteristic: SRA accession

text: inoculum sediment slurry

tag: Namespace:WAGENINGEN UNIVERSITY

characteristic: Submitter Id

text: enrichment culture

text: enrichment culture


negative control A t1 duplicate 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSITY

text: public

text: negative control A t1 duplicate 1

text: enrichment culture

characteristic: organism

text: enrichment culture

characteristic: title


negative control A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: negative control A t1 duplicate 2

text: enrichment culture

text: enrichment culture


negative control B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: negative control B t1 duplicate 1

text: enrichment culture

text: enrichment culture


negative control B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: negative control B t1 duplicate 2

text: enrichment culture

text: enrichment culture


negative control A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: negative control A t2 duplicate 1

text: enrichment culture

text: enrichment culture


negative control A t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: negative control A t2 duplicate 2

text: enrichment culture

text: enrichment culture


negative control B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: negative control B t2 duplicate 1

text: enrichment culture

text: enrichment culture


negative control B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: negative control B t2 duplicate 2

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture A t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture A t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: cellulose enrichment culture B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture A t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture A t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: chitin enrichment culture B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture A t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture A t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: fucoidan enrichment culture B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture A t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture A t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: laminarin enrichment culture B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture A t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture A t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: pullulan enrichment culture B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture A t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture A t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture A t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture B t1 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture B t1 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture B t2 duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: xylan enrichment culture B t2 duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


mucin enrichment culture

text: WAGENINGEN UNIVERSITY

text: public

text: mucin enrichment culture

text: enrichment culture

text: enrichment culture


name: chondroitin 4-sulfate enrichment culture

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


iota-carrageenan enrichment culture

text: WAGENINGEN UNIVERSITY

text: public

text: iota-carrageenan enrichment culture

text: enrichment culture

text: enrichment culture


name: acetate enrichment culture A duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: acetate enrichment culture A duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: acetate enrichment culture B duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: acetate enrichment culture B duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: propionate enrichment culture A duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: propionate enrichment culture A duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: propionate enrichment culture B duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: propionate enrichment culture B duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: butyrate enrichment culture A duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: butyrate enrichment culture A duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: butyrate enrichment culture B duplicate 1

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


name: butyrate enrichment culture B duplicate 2

text: WAGENINGEN UNIVERSITY

text: public

text: enrichment culture

text: enrichment culture


text: GSK

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

characteristic: common name

text: Protocols: For primary cultures, cells were obtained from three independent donors and cultured in parallel in both conditions. Cell lines were grown using standard culture methods and harvested sub-confluence in exponential growth phase. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

characteristic: description

text: hepatocellular carcinoma

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSK

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: human

text: Protocols: For primary cultures, cells were obtained from three independent donors and cultured in parallel in both conditions. Cells were seeded at 1500 cells per well in ultra-low adherence multi-well plates to facilitate cellular aggregation and spheroid formation. Cell line spheroids aggregated rapidly and were harvested 4-5 days post seeding. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: hepatocellular carcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GSK

characteristic: INSDC center name

text: public

text: ArrayExpress

text: primary cell

text: hepatocyte

text: human

text: Protocols: For primary cultures, cells were obtained from three independent donors and cultured in parallel in both conditions. Cells were grown in sandwich configuration between two layers of extracellular matrix (collagen coated plates and medium containing 0.25mg/ml Matrigel) and harvested at day 9 post seeding. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: normal

text: wild type genotype

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: Homo sapiens

characteristic: title


text: GSK

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: primary cell

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

text: Protocols: For primary cultures, cells were obtained from three independent donors and cultured in parallel in both conditions. Cells were seeded at 1500 cells per well in ultra-low adherence multi-well plates to facilitate cellular aggregation and spheroid formation. Primary cell spheroids formed more slowly and were harvested 14-17 days post seeding. Qiagen RNeasy plus mini kit Total RNA from each sample was used as input for the Illumina TruSeq Stranded messenger RNA LT Sample Prep Kit (Illumina) and sequencing libraries were created according to the manufacturer’s protocol. Briefly, poly-A containing mRNA molecules were purified using poly-T oligo-attached magnetic beads. Following purification, the mRNA was fragmented and copied into first strand complementary DNA using random primers and reverse transcriptase. Second strand cDNA synthesis was then done using DNA polymerase I, RNase H and substituting dUTP for dTTP. The cDNA was ligated to adapters and enriched with PCR to create the final cDNA library. The library was pooled and sequenced

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: liver

text: Homo sapiens


text: metagenome

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

text: metagenome

characteristic: common name

text: metagenome

text: metagenome


text: Normal

characteristic: ArrayExpress-Phenotype

text: female

characteristic: ArrayExpress-Sex

text: Homo sapiens

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens


text: Homo sapiens

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: OX

characteristic: INSDC first public

text: public

characteristic: description

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


text: OX

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: broker name

text: Moraxella catarrhalis

text: Moraxella catarrhalis


characteristic: ENA-CHECKLIST

text: OX

text: public

text: Neisseria lactamica

text: Neisseria lactamica


text: Laboratoire Agronomie et Environnement

text: public

tag: Namespace:Laboratoire Agronomie et Environnement

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: wheat

characteristic: host scientific name

text: Fusarium graminearum

text: Fusarium graminearum

characteristic: strain

text: Genome Sequence of Fusarium graminearum


E-MTAB-6874:Sample 13

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-6874:Sample 13

tag: Namespace:Institute for Biostatistics and Informatics in Medicine and Ageing Research Rostock University Medical Center

text: ArrayExpress

text: Protocols: Overnight cultures of S. pyogenes 2001 were 1:30 diluted in a total volume of 4 ml THY in a 6 well plate (TPP Tissue culture plates, Sigma) Cultures were supplemented with 50 µg/ml SpeA or the same volume of PBS (pH 7.4) respectively and incubated for 2 hours at 37°C in the presence of 5% CO2. Eight ml of RNAprotect (Qiagen) was subsequently added followed by incubation at room temperature for 10 min. The bacterial cells were pelleted by centrifugation at 5000×g for 6 minutes and RNA was isolated using TRIzol® (Thermo Fischer) as per manufacturer’s instruction. DNA was removed using DNase treatment (Turbo DNA-free™ Kit, Ambion, Life Technologies). Quality and concentration of the isolated RNA was estimated using Bio-Analyzer (Agilent 2001, BioRad). rRNA was then removed using the Ribo-Zero rRNA removal kit (Epicentre, Illumina) as per the instructions in the kit. The cDNA library was generated using Script SeqTM (Epicentre, Illumina) as per manufacturer’s instructions.

text: wild type genotype

characteristic: genotype

text: Todd Hewitt broth

characteristic: growth condition

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 13


E-MTAB-6874:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute for Biostatistics and Informatics in Medicine and Ageing Research Rostock University Medical Center

characteristic: INSDC center name

text: public

text: E-MTAB-6874:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 14


E-MTAB-6874:Sample 15

characteristic: INSDC first public

text: public

text: E-MTAB-6874:Sample 15

text: ArrayExpress

characteristic: description

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 15

characteristic: title


E-MTAB-6874:Sample 4

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6874:Sample 4

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 4


E-MTAB-6874:Sample 5

text: public

text: E-MTAB-6874:Sample 5

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 5


E-MTAB-6874:Sample 6

text: public

text: E-MTAB-6874:Sample 6

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 6


E-MTAB-6874:Sample 16

text: public

text: E-MTAB-6874:Sample 16

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 16


E-MTAB-6874:Sample 17

text: public

text: E-MTAB-6874:Sample 17

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 17


E-MTAB-6874:Sample 18

text: public

text: E-MTAB-6874:Sample 18

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 18


E-MTAB-6874:Sample 7

text: public

text: E-MTAB-6874:Sample 7

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 7


E-MTAB-6874:Sample 8

text: public

text: E-MTAB-6874:Sample 8

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 8


E-MTAB-6874:Sample 9

text: public

text: E-MTAB-6874:Sample 9

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 9


E-MTAB-6874:Sample 2

text: public

text: E-MTAB-6874:Sample 2

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 2


E-MTAB-6874:Sample 3

text: public

text: E-MTAB-6874:Sample 3

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 3


E-MTAB-6874:Sample 1

text: public

text: E-MTAB-6874:Sample 1

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 1


E-MTAB-6874:Sample 10

text: public

text: E-MTAB-6874:Sample 10

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 10


E-MTAB-6874:Sample 11

text: public

text: E-MTAB-6874:Sample 11

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 11


E-MTAB-6874:Sample 12

text: public

text: E-MTAB-6874:Sample 12

text: ArrayExpress

text: wild type genotype

text: Todd Hewitt broth

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Streptococcus pyogenes

text: Sample 12


text: INSTITUT DE CIENCIES DEL MAR

text: public

tag: Namespace:INSTITUT DE CIENCIES DEL MAR

characteristic: collection date

text: uncultured prokaryote

characteristic: common name

text: Malaspina 16S rDNA size-fraction vertical profiles

text: marine biome

characteristic: environment (biome)

text: open ocean

characteristic: environment (feature)

text: salt water

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

text: Malaspina 16S rDNA size-fractions

characteristic: project name

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: sequencing method

characteristic: size fraction lower threshold

characteristic: size fraction upper threshold

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INSTITUT DE CIENCIES DEL MAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured prokaryote

characteristic: description

text: marine biome

text: open ocean

text: salt water

text: Indian Ocean

text: mimarks-survey

text: uncultured prokaryote

characteristic: organism

text: Malaspina 16S rDNA size-fractions

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: title

text: water


text: INSTITUT DE CIENCIES DEL MAR

text: public

characteristic: collection date

text: uncultured prokaryote

characteristic: common name

text: marine biome

characteristic: environment (biome)

text: open ocean

characteristic: environment (feature)

text: salt water

characteristic: environment (material)

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured prokaryote

text: Malaspina 16S rDNA size-fractions

characteristic: project name

text: uncultured prokaryote

text: Illumina MiSeq

characteristic: sequencing method

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE

text: Read1: CTGTCTCTTATACACATCTCCGAGCCCACGAGACNNNNNNNNATCTCGTATGCCGTCTTCTGCTTG; Read2: CTGTCTCTTATACACATCTGACGCTGCCGACGANNNNNNNNGTGTAGATCTCGGTGGTCGCCGTATCATT

characteristic: adapters

text: human gut metagenome

text: Faecal metagenome of a 61 old male from Bandevouri, Cameroon

text: human-associated habitat

text: organic feature

text: feces

text: Cameroon

text: Cameroon: Bandevouri

characteristic: geographic location (region and locality)

characteristic: host age

characteristic: host body mass index

text: feces

characteristic: host body product

text: Hunter-gatherer

characteristic: host diet

unit: cm

characteristic: host height

text: male

characteristic: host sex

characteristic: host subject id

unit: kg

characteristic: host total mass

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Nextera XT

characteristic: library construction method

characteristic: library reads sequenced

text: random

characteristic: library screening strategy

text: TAAGGCGA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: human gut metagenome

text: ANR MICROREGAL

text: self-collection in plastic containers

characteristic: sample collection device or method

text: ethanol preservation, freezing storage

characteristic: sample material processing

unit: °C

characteristic: sample storage temperature

unit: mg

characteristic: sample volume or weight for DNA extraction

text: human gut metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

text: ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: human gut metagenome

characteristic: common name

text: Faecal metagenome of a 41 old male from Bidou, Cameroon

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Cameroon

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cameroon: Bidou

characteristic: geographic location (region and locality)

characteristic: host age

characteristic: host body mass index

text: feces

text: Hunter-gatherer

text: male

text: human-gut

text: metagenome

characteristic: investigation type

text: Nextera XT

text: random

text: CGTACTAG

text: human gut metagenome

characteristic: organism

text: ANR MICROREGAL

characteristic: project name

text: self-collection in plastic containers

text: ethanol preservation, freezing storage

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: human gut metagenome

text: Faecal metagenome of a 49 old female from Bidou, Cameroon

text: human-associated habitat

text: organic feature

text: feces

text: Cameroon

text: Cameroon: Bidou

text: feces

characteristic: host body product

text: Hunter-gatherer

characteristic: host diet

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

characteristic: host total mass

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Nextera XT

characteristic: library construction method

characteristic: library reads sequenced

text: random

characteristic: library screening strategy

text: AGGCAGAA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: human gut metagenome

text: ANR MICROREGAL

text: self-collection in plastic containers

characteristic: sample collection device or method

text: ethanol preservation, freezing storage

characteristic: sample material processing

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: human gut metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: human gut metagenome

characteristic: common name

text: Faecal metagenome of a 57 old male from Bidou, Cameroon

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Cameroon

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cameroon: Bidou

characteristic: geographic location (region and locality)

characteristic: host age

characteristic: host body mass index

text: feces

text: Hunter-gatherer

text: male

text: human-gut

text: metagenome

characteristic: investigation type

text: Nextera XT

text: random

text: TCCTGAGC

text: human gut metagenome

characteristic: organism

text: ANR MICROREGAL

characteristic: project name

text: self-collection in plastic containers

text: ethanol preservation, freezing storage

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: human gut metagenome

text: Faecal metagenome of a 53 old female from Bidou, Cameroon

text: human-associated habitat

text: organic feature

text: feces

text: Cameroon

text: Cameroon: Bidou

text: feces

characteristic: host body product

text: Hunter-gatherer

characteristic: host diet

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

characteristic: host total mass

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: Nextera XT

characteristic: library construction method

characteristic: library reads sequenced

text: random

characteristic: library screening strategy

text: GGACTCCT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: human gut metagenome

text: ANR MICROREGAL

text: self-collection in plastic containers

characteristic: sample collection device or method

text: ethanol preservation, freezing storage

characteristic: sample material processing

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: human gut metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: human gut metagenome

characteristic: common name

text: Faecal metagenome of a 36 old male from Bidou, Cameroon

characteristic: description

text: human-associated habitat

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Cameroon

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Cameroon: Bidou

characteristic: geographic location (region and locality)

characteristic: host age

characteristic: host body mass index

text: feces

text: Hunter-gatherer

text: male

text: human-gut

text: metagenome

characteristic: investigation type

text: Nextera XT

text: random

text: TAGGCATG

text: human gut metagenome

characteristic: organism

text: ANR MICROREGAL

characteristic: project name

text: self-collection in plastic containers

text: ethanol preservation, freezing storage

text: human gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bagyeli

characteristic: IHMC ethnicity

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: human gut metagenome

text: Faecal metagenome of a 33 old female from Bidou, Cameroon

text: human-associated habitat

text: organic feature

text: feces

text: Cameroon

text: Cameroon: Bidou

text: feces

characteristic: host body product

text: Hunter-gatherer

characteristic: host diet

characteristic: host height

text: female

characteristic: host sex

characteristic: host subject id

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characteristic: ENA-CHECKLIST

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text: human gut metagenome

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text: Faecal metagenome of a 59 old female from Bandevouri, Cameroon

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characteristic: ENA-CHECKLIST

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text: human gut metagenome

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characteristic: ENA-CHECKLIST

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text: Bagyeli

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text: human gut metagenome

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text: Faecal metagenome of a 30 old male from Makouvé, Cameroon

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characteristic: ENA-CHECKLIST

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text: Bagyeli

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text: human gut metagenome

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characteristic: ENA-CHECKLIST

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text: human gut metagenome

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characteristic: sample collection device or method

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characteristic: ENA-CHECKLIST

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text: organic feature

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: geographic location (region and locality)

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text: feces

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characteristic: sequencing method

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characteristic: ENA-CHECKLIST

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text: Bantu

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text: Read1: CTGTCTCTTATACACATCTCCGAGCCCACGAGACNNNNNNNNATCTCGTATGCCGTCTTCTGCTTG; Read2: CTGTCTCTTATACACATCTGACGCTGCCGACGANNNNNNNNGTGTAGATCTCGGTGGTCGCCGTATCATT

characteristic: adapters

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text: human gut metagenome

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text: human-associated habitat

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characteristic: host body product

text: Farmer

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characteristic: library construction method

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characteristic: sample collection device or method

text: ethanol preservation, freezing storage

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text: human gut metagenome

text: Illumina HiSeq


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: Bantu

characteristic: IHMC ethnicity

text: ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESE

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text: human gut metagenome

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text: Faecal metagenome of a 65 old male from Bandevouri, Cameroon

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text: human-associated habitat

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

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characteristic: sequencing method

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text: human gut metagenome

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text: human gut metagenome

text: Illumina HiSeq