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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Assemblies of V1.UC57-0

text: gut microbiome

text: gut microbiome

text: fecal sample

characteristic: environment (material)

text: Denmark

text: human-gut

text: metagenome

text: human gut metagenome

text: 1504 MetaHIT metagenomes

text: human gut metagenome

text: Illumina

text: Assemblies of V1.UC57-0


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BGI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

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text: gut microbiome

characteristic: environment (biome)

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characteristic: environment (feature)

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characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: human gut environmental package

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characteristic: investigation type

text: human gut metagenome

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characteristic: project name

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text: Illumina

characteristic: sequencing method

text: Assemblies of V1.UC58-0

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BGI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Assemblies of V1.UC58-4

text: gut microbiome

text: gut microbiome

text: fecal sample

characteristic: environment (material)

text: Denmark

text: human-gut

text: metagenome

text: human gut metagenome

text: 1506 MetaHIT metagenomes

text: human gut metagenome

text: Illumina

text: Assemblies of V1.UC58-4


characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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characteristic: environment (biome)

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characteristic: geographic location (country and/or sea)

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text: metagenome

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text: public

text: Assemblies of V1.UC59-4

text: gut microbiome

text: gut microbiome

text: fecal sample

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characteristic: geographic location (latitude)

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characteristic: sequencing method

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characteristic: ENA-CHECKLIST

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characteristic: INSDC last update

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characteristic: INSDC status

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characteristic: Submitter Id

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characteristic: environment (material)

text: Denmark

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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text: gut microbiome

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC status

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text: gut microbiome

text: fecal sample

characteristic: environment (material)

text: Denmark

text: human-gut

text: metagenome

text: human gut metagenome

text: 1512 MetaHIT metagenomes

text: human gut metagenome

text: Illumina

text: Assemblies of V1.UC62-0


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characteristic: External Id

text: BGI

characteristic: INSDC center name

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text: gut microbiome

text: fecal sample

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characteristic: ENA-CHECKLIST

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text: BGI

text: public

text: Assemblies of V1.UC9-0

text: gut microbiome

text: gut microbiome

text: fecal sample

text: Denmark

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

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text: 1517 MetaHIT metagenomes

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text: human gut metagenome

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text: Assemblies of V1.UC9-0

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: age

text: CNSA

characteristic: broker name

text: orange-spotted grouper

characteristic: common name

text: reared by author

text: Epinephelus coioides

text: female-PacBio

characteristic: sample name

text: Epinephelus coioides

text: female

characteristic: sex

text: whole body

characteristic: tissue


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNGB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: one month

text: CNSA

text: orange-spotted grouper

text: reared by author

characteristic: description

text: Epinephelus coioides

text: female-illumina

text: Epinephelus coioides

text: female

text: whole body


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_5d6d9bf7-9f58-4f9e-9ff8-cb765ba2906b

tag: Namespace:Public Health Agency of Sweden

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

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text: public

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text: sam_FOHM_71198b7f-9ff0-4be5-9634-6a23348580e5

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text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_FOHM_f46c27cf-ffdc-4d30-9680-287eba1affcc

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

text: public

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text: Sweden

text: yes

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text: Escherichia coli

text: Escherichia coli


text: Public Health Agency of Sweden

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text: sam_FOHM_f4d4d460-abb6-4da9-a676-5bfd168418ed

text: FOHM

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_821a40ec-587f-49c8-bb3d-ce4c2eec87f6

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text: yes

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text: Escherichia coli

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text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

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text: sam_FOHM_d5df2765-67f4-4ca6-afa2-fa0974136238

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text: yes

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text: Escherichia coli

text: Escherichia coli

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text: Public Health Agency of Sweden

text: public

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text: sam_FOHM_6b264828-90e8-4524-b002-804aa616573c

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: public

text: sam_FOHM_4f127f13-76ce-47bc-9197-fae749259009

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

characteristic: INSDC first public

text: public

text: sam_FOHM_97def9c1-86b5-4b33-8e2d-6843c65049f3

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text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Public Health Agency of Sweden

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characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_7fd66ae0-888c-4609-8758-da377c9abaae

text: FOHM

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

characteristic: INSDC last update

text: public

text: sam_FOHM_548dcc67-18b9-41d6-8fc0-0f68645e3a0a

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text: yes

text: Homo sapiens

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text: Escherichia coli

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text: Public Health Agency of Sweden

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text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

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characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_155c6298-7718-4740-b72e-80c3b606cb79

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text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: public

text: sam_FOHM_8315299c-7fb8-4ca3-9193-d4a48c5ee67c

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Public Health Agency of Sweden

characteristic: INSDC first public

text: public

text: sam_FOHM_eebbb70f-f201-47b2-9077-f15161a25f28

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characteristic: collection date

text: Sweden

text: yes

text: Homo sapiens

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_37615b96-6e78-4aad-8e09-c0d98afd12e3

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


E-MTAB-6687:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6687:Sample 1

tag: Namespace:Division of Genomics of Development and Disease, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia, 4072

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: induced pluripotent stem cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: For scRNA-seq, samples one and two were harvested from a single plate using Versene, split into two technical replicates resuspended in Dulbecco's PBS (dPBS; Life Technologies, cat. no. 14190-144) with 0.04% bovine serum albumin (Sigma; , cat. no. A9418-50G) and immediately transported for cell sorting. For samples 3-5 cells were harvested from individual plates using 0.25% Trypsin (Life Technologies, cat. no. 15090-046) in Versene, neutralized using 50% fetal bovine serum (HyClone, cat. no. SH30396.03) in DMEM/F12 (Life Technologies, cat. no. 11320-033), centrifuged at 1200 rpm for 5 minutes and re-suspended in dPBS + 0.04% BSA.Viable cells were sorted on a BD Influx cell sorter (Becton-Dickinson) using Propidium Iodide into Dulbecco's PBS + 0.04% bovine serum albumin and retained on ice. Sorted cells were counted and assessed for viability with Trypan Blue using a Countess automated counter (Invitrogen), and then resuspended at a concentration of 800-1000 cells/µL (8 x 105-1 x 106 cells/mL). Final cell viability estimates ranged between 80-93%. Undifferentiated human induced pluripotent stem cells (hiPSC; WTC-wild type C) were provided courtesy of Bruce Conklin (UCSF and Gladstone Institutes) as previously described (Mandegar et al., 2016). Cells were maintained on Vitronectin XF (STEMCELL Technologies, cat. no. 07180) and cultured in mTeSR1 (STEMCELL Technologies, cat. no. 05850). Cytogenetic analysis by Giemsa banding showed a normal 46, XY male karyotype. Single cell suspensions were loaded onto 10X Genomics Single Cell 3' Chips along with the reverse transcription (RT) mastermix as per the manufacturer's protocol for the Chromium Single Cell 3' Library (10X Genomics; version 1 chemistry; PN-120233), to generate single cell gel beads in emulsion (GEMs). Reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad) as follows: 55oC for 2h; 85oC for 5min; hold 4oC. cDNA was recovered and purified with DynaBeads MyOne Silane Beads (Thermo Fisher Scientific; Cat# 37002D) and SPRIselect beads (Beckman Coulter; Cat# B23318). Purified cDNA was amplified as follows: 98oC for 3min; 12x(98oC for 15s, 67oC for 20s, 72oC for 60s); 72oC for 60s; hold 4oC. Amplified cDNA was purified using SPRIselect beads and sheared to approximately 200bp with a Covaris S2 instrument (Covaris) using the manufacturer's recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample.

characteristic: description

text: normal

characteristic: disease

characteristic: genotype

text: Normal 46, XY

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1


E-MTAB-6687:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Division of Genomics of Development and Disease, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland, Australia, 4072

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6687:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: normal

text: Normal 46, XY

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens

text: male

text: Sample 2

characteristic: title


E-MTAB-6687:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

text: E-MTAB-6687:Sample 3

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: induced pluripotent stem cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: normal

text: Normal 46, XY

text: Homo sapiens

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens

text: male

text: Sample 3


E-MTAB-6687:Sample 4

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6687:Sample 4

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: normal

characteristic: disease

characteristic: genotype

text: Normal 46, XY

characteristic: karyotype

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: fibroblast

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: sex

text: Sample 4


E-MTAB-6687:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6687:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: normal

text: Normal 46, XY

text: Homo sapiens

text: Homo sapiens

text: skin

text: fibroblast

text: Homo sapiens

text: male

text: Sample 5


characteristic: ENA-FIRST-PUBLIC

text: JLU

characteristic: INSDC last update

text: public

text: Pseudomonas reidholzensis strain CCOS 865 genome sequence

text: Pseudomonas reidholzensis

characteristic: organism

text: Pseudomonas reidholzensis

text: CCOS 865

characteristic: strain

characteristic: title


E-MTAB-7058:Sample 1

characteristic: ENA-CHECKLIST

text: Vanderbilt University Medical Center

text: public

text: E-MTAB-7058:Sample 1

tag: Namespace:Vanderbilt University Medical Center

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: retinal cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Retinas were dissected from adult mice and dissociated using the Papain Dissociation Kit (Worthington). Retinas were dissociated into single cell suspensions and sorted into two fractions: a Muller glia-enriched fraction on the basis of Muller glia-specific tdTomato expression and a second fraction containing the remaining retinal cells that were tdTomato-negative. Both fractions were sequenced. Total RNA was isolated using TRIzol reagent (Invitrogen). RNA molecules were captured using poly-A selection. Libraries were prepared using the Clontech SMARTer low input RNA library kit (Takara).

characteristic: description

text: Rlbp1-CreERT2; Rosa ai14/ai14

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: retina

text: tdTomato negative

characteristic: phenotype

text: Mus musculus

text: female

text: Sample 1


E-MTAB-7058:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vanderbilt University Medical Center

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7058:Sample 2

text: ArrayExpress

text: retinal cell

text: house mouse

text: Rlbp1-CreERT2; Rosa ai14/ai14

text: Mus musculus

text: Mus musculus

text: retina

characteristic: organism part

text: tdTomato negative

text: Mus musculus

text: male

characteristic: sex

text: Sample 2


E-MTAB-7058:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: Vanderbilt University Medical Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7058:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: Muller cell

text: house mouse

text: Rlbp1-CreERT2; Rosa ai14/ai14

text: Mus musculus

characteristic: organism

text: Mus musculus

text: retina

text: tdTomato positive

text: Mus musculus

text: male

text: Sample 3


E-MTAB-7058:Sample 4

characteristic: ENA-CHECKLIST

text: Vanderbilt University Medical Center

text: public

text: E-MTAB-7058:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Muller cell

characteristic: cell type

text: house mouse

text: Rlbp1-CreERT2; Rosa ai14/ai14

text: Mus musculus

text: Mus musculus

text: retina

text: tdTomato positive

text: Mus musculus

text: female

characteristic: strain

text: Sample 4

characteristic: title


E-MTAB-7058:Sample 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vanderbilt University Medical Center

text: public

text: E-MTAB-7058:Sample 5

text: ArrayExpress

text: Muller cell

text: house mouse

characteristic: common name

characteristic: description

text: Rlbp1-CreERT2; Rosa ai14/ai14

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: retina

text: tdTomato positive

characteristic: phenotype

text: Mus musculus

text: male

text: Sample 5


characteristic: ENA-FIRST-PUBLIC

text: INSTITUT PASTEUR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:INSTITUT PASTEUR

text: Escherichia coli str. K-12 substr. MG1655


text: BANG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CPANA

text: mixed

characteristic: dev stage

text: Caenorhabditis sp. 28 LS-2018

characteristic: organism

text: Caenorhabditis sp. 28 LS-2018


characteristic: ENA-CHECKLIST

text: Animal and Plant Health Agency

text: public

tag: Namespace:Animal and Plant Health Agency

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: host health state

text: Phoca vitulina

characteristic: host scientific name

characteristic: isolate

text: Seal

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Antimicrobial-resistant bacteria in free-living marine mammals; detection of Klebsiella pneumoniae subspecies pneumoniae producing the carbapenemase OXA-48 indicates likely anthropogenic marine microbial pollution.


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ADAC University of Nottingham

text: public

tag: Namespace:ADAC University of Nottingham

characteristic: barcode

text: pig

characteristic: common name

text: Longissimus Dorsi skeletal muscle

characteristic: description

text: Sus scrofa

text: Sus scrofa

characteristic: time

characteristic: title

text: (B) Received beta-adrenergic agonist, Ractopamine, in their feed.

characteristic: treatment


characteristic: ENA-FIRST-PUBLIC

text: ADAC University of Nottingham

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: pig

text: Longissimus Dorsi skeletal muscle

text: Sus scrofa

text: Sus scrofa

text: (C) Control cohort, received feed only.


characteristic: ENA-CHECKLIST

text: ADAC University of Nottingham

text: public

text: pig

text: Longissimus Dorsi skeletal muscle

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: (G) Administered an intramuscular injection of the recombinant growth hormone, Reporcin.


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF SHEFFIELD

text: public

tag: Namespace:UNIVERSITY OF SHEFFIELD

characteristic: collection date

text: MIDG3277, a clinical bovine respiratory isolate of Pasteurella multocida

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

characteristic: isolate

text: Bovine respiratory tract

characteristic: isolation source

text: Pasteurella multocida

text: Pasteurella multocida

characteristic: strain

text: Pasteurella multocida strain MIDG3277


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

tag: Namespace:UNIVERSITY OF GLASGOW

text: fruit fly

characteristic: common name

text: Adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

characteristic: sex

text: Female Salivary Gland (Mir)

characteristic: tissue lib

text: Salivary Gland

characteristic: tissue type

text: FlyAtlas2 Mir

characteristic: title


E-MTAB-7147:Sample 1

characteristic: ENA-CHECKLIST

text: HARVARD UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7147:Sample 1

tag: Namespace:HARVARD UNIVERSITY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: Following compound treatment and UV irradiation, cells were directly lysed in dishes with Ribozol reagent. All samples were subject to RNA capture/pulldown using Desthiobiotin-Streptavidin. Direct-zol RNA purification kit (Zymo Research) Total RNA was subjected to fragmentation, conjugation of desthiobiotin using \click\ chemistry, ligation of a 3'-adapter, reverse transcription to cDNA, capture and enrichment with streptavidin beads, and PCR amplification.

characteristic: description

text: malignant melanoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-7147:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 2

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 2


E-MTAB-7147:Sample 5

characteristic: ENA-CHECKLIST

text: HARVARD UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-7147:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-7147:Sample 6

text: HARVARD UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7147:Sample 6

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 6


E-MTAB-7147:Sample 7

text: HARVARD UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-7147:Sample 7

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 7


E-MTAB-7147:Sample 8

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 8

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: description

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 8


E-MTAB-7147:Sample 10

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 10

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 10


E-MTAB-7147:Sample 9

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 9

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 9


E-MTAB-7147:Sample 3

characteristic: ENA-CHECKLIST

text: HARVARD UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-7147:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 3


E-MTAB-7147:Sample 4

text: HARVARD UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7147:Sample 4

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 4

characteristic: title


E-MTAB-7147:Sample 14

text: HARVARD UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7147:Sample 14

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 14


E-MTAB-7147:Sample 15

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 15

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 15


E-MTAB-7147:Sample 16

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 16

text: ArrayExpress

text: epithelial cell

text: human

characteristic: description

text: malignant melanoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 16


E-MTAB-7147:Sample 17

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 17

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 17


E-MTAB-7147:Sample 18

characteristic: ENA-CHECKLIST

characteristic: External Id

text: HARVARD UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-7147:Sample 18

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 18


E-MTAB-7147:Sample 11

text: HARVARD UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7147:Sample 11

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 11


E-MTAB-7147:Sample 12

text: HARVARD UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7147:Sample 12

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 12

characteristic: title


E-MTAB-7147:Sample 13

text: HARVARD UNIVERSITY

text: public

text: E-MTAB-7147:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 13


text: Centre for Genomic Regulation

text: public

tag: Namespace:Centre for Genomic Regulation

text: ArrayExpress

text: Protocols: RNA extraction with Qiazol Cells were grown in modified Hayflick medium miRNeasy kit from Qiagen (in column DNase) Strand-specific RNA-seq library, the TruSeq Stranded mRNA Sample Prep Kit v2 (Illumina)

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: gp35 MPN329 deletion

text: Mycoplasma pneumoniae

characteristic: organism

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: TnPuro-acpP, acp, acpT, fabK

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

characteristic: INSDC last update

text: public

text: ArrayExpress

text: TnPuro

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

characteristic: INSDC status

text: ArrayExpress

text: MPN027 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

characteristic: SRA accession

text: ArrayExpress

text: MPN051 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN076 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

characteristic: title


text: Centre for Genomic Regulation

text: public

characteristic: Submitter Id

text: ArrayExpress

text: MPN077 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

characteristic: broker name

text: MPN113 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN159 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN162 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN223 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN241 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN247 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN248 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN275 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN294 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN420 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN424 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN490 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN506 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN545 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: MPN566 transposon insertion

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation

text: public

text: ArrayExpress

text: wild type genotype

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae


text: Wellcome Sanger Institute

text: public

tag: Namespace:Wellcome Sanger Institute

text: ArrayExpress

text: 6 to 12 weeks gestation

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: Placental and decidual tissue for immunohistochemistry were obtained from elective terminations of normal pregnancies at Addenbrooke’s Hospital between 6 and 12 weeks gestation. Decidual and placental tissue were washed in HAMS F12 medium, macroscopically separated and then washed for at least 10 mins in RPMI or HAMS F12 medium respectively before processing.Decidual tissues were chopped using scalpels into approximately 0.2 mm3 cubes and enzymatically digested in 15ml 0.4mg/mL collagenase V (Sigma, C-9263) solution in RPMI 1640 medium (ThermoFisher Scientific, 21875-034)/10% FCS (Biosfera, FB-1001) at 37°C for 45 min. The supernatant was diluted with medium and passed through 100um cell sieve (Corning, 431752) and then 40um cell sieve (Corning, 431750). The flow-through was centrifuged and resuspended in 5ml of red blood cell lysis buffer (Invitrogen, 00-4300) for 10min.Each first trimester placenta was placed in a petri dish and the placental villi were scraped from the chorionic membrane using a scalpel. The stripped membrane was discarded and the resultant villous tissue was enzymatically digested in 70 ml 0.2% trypsin 250 (Pan Biotech P10-025100P)/0.02% EDTA (Sigma E9884) in PBS with stirring at 37°c for 9 min. The disaggregated cell suspension was passed through sterile muslin gauze (Winware food grade) and washed through with Hams F12 medium (Biosera SM-H0096) containing 20% FBS (Biosera FB-1001). Cells were pelleted from the filtrate by centrifugation and re-suspended in Hams F12. The undigested, gelatinous tissue remnant was retrieved from the gauze and further digested with 10-15 ml collagenase V at 1.0mg/ml (Sigma C9263) in Hams F12 medium/10% FBS with gentle shaking at 37°C for 10 min. The disaggregated cell suspension from collagenase digestion was passed through sterile muslin gauze and the cells pelleted from the filtrate as before. Cells obtained from both enzyme digests were pooled together and passed through 100um cell sieve (Corning, 431752) and washed in Hams F12. The flow-through was centrifuged and resuspended in 5ml of red blood cell lysis buffer (Invitrogen, 00-4300) for 10min.Decidual and blood cells were incubated at 4°C with 2.5ul of antibodies in 1% FBS in DPBS without Calcium and Magnesium (ThermoFisher Scientific, 14190136). DAPI was used for live/dead discrimination. We used an antibody panel (Fig xxx) designed to enrich for certain population for single-cell sorting and single-cell RNA sequencing (scRNA-seq). Cells were sorted using a Becton Dickinson (BD) FACS Aria Fusion with 5 excitation lasers (355nm, 405nm, 488nm, 561nm and 635nm Red), and 18 fluorescent detectors plus forward and side scatter. The sorter was controlled using BD FACS DIVA software (version 7).For the droplet RNA-seq methods, blood and decidual cells were sorted into immune (CD45+) and non-immune (CD45-) fractions. Only viable cells were considered, and B cells (CD19+/CD20+) cells were excluded from our analysis. Placental cells were stained for DAPI and only viable cells were sorted. Cells were sorted into an eppendorf containing PBS with 0.04% BSA. Cells were immediately counted using a Neubauer hemocytometer and loaded in the 10x-genomics machine. RNA was converted into cDNA and amplified as part of the 10x v2 chemistry. Libraries were constructed using the 10x v2 chemistry

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: facs marker

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: decidua

characteristic: organism part

characteristic: run

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

text: ArrayExpress

text: 6 to 12 weeks gestation

text: human

characteristic: description

text: adult

text: normal

text: PB

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female


text: Wellcome Sanger Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: 6 to 12 weeks gestation

text: human

text: adult

text: normal

text: all

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens

text: female

characteristic: title


text: Wellcome Sanger Institute

text: public

text: ArrayExpress

text: 6 to 12 weeks gestation

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Epcam+

characteristic: facs marker

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: placenta

characteristic: organism part

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

text: ArrayExpress

text: 6 to 12 weeks gestation

text: human

text: adult

text: normal

text: HLAG+

text: Homo sapiens

text: Homo sapiens

text: decidua

characteristic: run

text: Homo sapiens

text: female

characteristic: sex


text: Wellcome Sanger Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: 6 to 12 weeks gestation

text: human

characteristic: description

text: adult

text: normal

text: HLAG+

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: placenta

text: Homo sapiens

text: female


text: EAST CAROLINA UNIVERSITY

text: public

tag: Namespace:EAST CAROLINA UNIVERSITY

text: blue-black

characteristic: color morph

text: Metamorphosis

characteristic: dev stage

text: Dendrobates auratus

text: Dendrobates auratus

text: Skin

characteristic: tissue type

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EAST CAROLINA UNIVERSITY

text: public

text: microspot

text: Metamorphosis

text: Dendrobates auratus

text: Dendrobates auratus

text: Skin


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAST CAROLINA UNIVERSITY

text: public

text: san-felix

text: Metamorphosis

text: Dendrobates auratus

text: Dendrobates auratus

text: Skin


text: EAST CAROLINA UNIVERSITY

characteristic: INSDC center name

text: public

text: super-blue

text: Metamorphosis

text: Dendrobates auratus

text: Dendrobates auratus

text: Skin


text: HEINRICH HEINE UNIVERSITY DUESSELDORF

text: public

tag: Namespace:HEINRICH HEINE UNIVERSITY DUESSELDORF

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: RNAseq of MSI1/2 KD and MSI2 PARCLIP


E-MTAB-6653:Sample 1a

characteristic: INSDC first public

text: public

text: E-MTAB-6653:Sample 1a

tag: Namespace:VIB Center for Cancer Biology (CCB) Laboratory for Translational Genetics  Department of Human Genetics KULeuven

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Following resection in the operating room, samples from the tumour and adjacent lung tissue from the same resection specimen at maximal distance (>5 cm) from the tumour were isolated, and transported rapidly to the research facility. Upon arrival, samples were rinsed with PBS, and the tumour sample macroscopically examined for tumour positioning. The tumour sample was subsequently divided in 3 pieces, with one piece containing mainly tissue derived from the tumour core, one piece containing tissue mainly derived from the tumour edge, and a third piece originating from the position intermediate to both samples. Each sample was subsequently minced on ice to smaller pieces of less than 1 mm3, and transferred to 10 mL digestion medium. Samples were incubated for 15 minutes at 37°C, with manual shaking every 5 minutes. Samples were then vortexed for 10 seconds, and pipetted up and down for 1 minute using pipettes of descending sizes (25 mL, 10 mL and 5 mL). Next, 30 mL ice-cold phosphate-buffered saline, pH 7.4 (PBS; ThermoFisher Scientific) containing 2% foetal bovine serum (ThermoFisher Scientific) was added, samples were filtered using a 40µm nylon mesh (ThermoFisher Scientific). Following centrifugation at 120 G at 4°C for 5 minutes, the supernatant was decanted and discarded, and the cell pellet was resuspended in 2 mL red blood cell lysis buffer and transferred to a 2 mL DNA low bind tube. Following a 5-minute incubation at room temperature, samples were centrifuged (120 G, 4°C, 5 min) using a swing-out rotor. Samples were next resuspended in 1 mL PBS containing 8 µL UltraPure bovine serum albumin (50 mg/mL; AM2616, ThermoFisher Scientific) and filtered over Scienceware Flowmi 40 µm cell strainers (VWR) using wide bore 1 mL low retention filter tips (Mettler-Toledo). 10 µL of this cell suspension was next counted using an automated cell counter (Luna) to determine the concentration of live cells. Single cell suspensions were converted to barcoded Drop-seq libraries by using the Chromium Single Cell 3’ Library, Gel Bead & Multiplex Kit and Chip Kit (10X Genomics; Pleasanton, California, USA), aiming for an estimated 4,000 cells per library. Samples were processed using kits pertaining to V2 barcoding chemistry of 10X Genomics.

text: lung carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: normal tissue adjacent to tumour

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1a


E-MTAB-6653:Sample 1b

text: VIB Center for Cancer Biology (CCB) Laboratory for Translational Genetics Department of Human Genetics KULeuven

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6653:Sample 1b

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: tumour edge

text: Homo sapiens

text: male

text: Sample 1b


E-MTAB-6653:Sample 1c

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6653:Sample 1c

text: ArrayExpress

text: human

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumour middle (in between core and edge sample)

text: Homo sapiens

text: male

text: Sample 1c

characteristic: title


E-MTAB-6653:Sample 1d

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6653:Sample 1d

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumour core

text: Homo sapiens

text: male

text: Sample 1d


E-MTAB-6653:Sample 2a

text: public

text: E-MTAB-6653:Sample 2a

text: ArrayExpress

text: human

text: lung carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: tumour core

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 2a


E-MTAB-6653:Sample 2b

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6653:Sample 2b

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: male

text: Sample 2b


E-MTAB-6653:Sample 2c

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6653:Sample 2c

text: ArrayExpress

text: human

text: lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: tumour edge

text: Homo sapiens

text: male

text: Sample 2c


E-MTAB-6653:Sample 2d

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6653:Sample 2d

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumour

text: Homo sapiens

text: male

text: Sample 2d

characteristic: title


E-MTAB-6653:Sample 3a

text: public

text: E-MTAB-6653:Sample 3a

text: ArrayExpress

text: human

characteristic: common name

text: lung carcinoma

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: tumour core

characteristic: sampling site

text: Homo sapiens

text: female

text: Sample 3a


E-MTAB-6653:Sample 3b

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6653:Sample 3b

characteristic: Submitter Id

text: ArrayExpress

text: human

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: Homo sapiens

text: female

characteristic: sex

text: Sample 3b


E-MTAB-6653:Sample 3c

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6653:Sample 3c

text: ArrayExpress

text: human

characteristic: description

text: lung carcinoma

text: Homo sapiens

text: Homo sapiens

text: lung

text: tumour edge

text: Homo sapiens

text: female

text: Sample 3c


E-MTAB-6653:Sample 3d

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6653:Sample 3d

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: lung carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: normal tissue adjacent to tumour

text: Homo sapiens

text: female

text: Sample 3d


text: UNIVERSITY OF GLASGOW

text: public

text: Female_Thoracicoabdominal_ganglion_Mir_1

text: fruit fly

characteristic: common name

text: Adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Thoracicoabdominal Ganglion

characteristic: tissue lib

text: Thoracicoabdominal Ganglion

characteristic: tissue type

text: FlyAtlas2 Mir

characteristic: title


text: UNIVERSITY OF GLASGOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Female_Thoracicoabdominal_ganglion_Mir_2

characteristic: Submitter Id

text: fruit fly

text: Adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Thoracicoabdominal Ganglion

text: Thoracicoabdominal Ganglion

text: FlyAtlas2 Mir


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Male

characteristic: sex

text: Male Thoracicoabdominal Ganglion (Mir)

text: Thoracicoabdominal Ganglion

text: FlyAtlas2 Mir


characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: fruit fly

text: Adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Eye (Mir)

text: Eye

text: FlyAtlas2 Mir


text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Adult

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: Male

text: Male Eye (Mir)

text: Eye


text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

characteristic: common name

text: Adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Mated Spermatheca

text: Spermatheca


text: UNIVERSITY OF GLASGOW

text: public

text: fruit fly

text: Adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: Female

text: Female Virgin Spermatheca

text: Spermatheca


text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

text: public

tag: Namespace:KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Escherichia coli

text: E. coli diversity in healthy and IBD human gut

characteristic: project name

text: Escherichia coli

text: Illumina MiSeq

characteristic: sequencing method

text: Whole-genome sequencing of cultivated endobacterial community


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEAGASC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Microbiome sequence data derived from participants' stool samples

characteristic: description

text: Human stool

text: waste

text: feces

text: Inflammatory Bowel Disease

characteristic: gastrointestinal tract disorder

text: Ireland

text: human-gut

text: metagenome

text: gut metagenome

text: ExMET-IBD

text: gut metagenome

text: Shotgun Metagenomic

text: Subject Microbiome

characteristic: title


text: TEAGASC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Human stool

characteristic: environment (biome)

text: waste

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Inflammatory Bowel Disease

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: metagenome

text: gut metagenome

characteristic: organism

text: ExMET

text: gut metagenome

text: Shotgun Metagenomic

text: Subject Microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: J CRAIG VENTER INSTITUTE

text: public

tag: Namespace:J CRAIG VENTER INSTITUTE

characteristic: air temperature regimen

text: great duckweed

characteristic: common name

characteristic: estimated size

text: Germany

characteristic: geographic location (longitude)

text: liquid Schenk and Hildebrandt

characteristic: isolation and growth condition

characteristic: light regimen

text: liquid Schenk and Hildebrandt

characteristic: mineral nutrient regimen

characteristic: number of replicons

text: Spirodela polyrhiza

text: Greater Duckweed

characteristic: organism common name

text: juvenile

characteristic: plant developmental stage

text: liquid Schenk and Hildebrandt

characteristic: plant growth medium

text: frond

characteristic: plant structure

text: liquid Schenk and Hildebrandt

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: Spirodela polyrhiza

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank

text: Spirodela polyrhiza 9509 v3 assembly

text: liquid Schenk and Hildebrandt

characteristic: watering regimen


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Bioscience Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Quadram Bioscience Institute

characteristic: Submitter Id

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: infant stool

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Bifidobacterium pseudocatenulatum

characteristic: organism

text: Three full term infant stool analysis

characteristic: project name

text: Bifidobacterium pseudocatenulatum

text: illumina MiSeq

characteristic: sequencing method

text: Infant stool bifidobacterium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Bioscience Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human gut

text: infant stool

text: faeces

text: United Kingdom

characteristic: geographic location (longitude)

text: human-associated

text: metagenome

text: Bifidobacterium longum subsp. longum

text: Three full term infant stool analysis

text: Bifidobacterium longum subsp. longum

text: illumina MiSeq

text: Infant stool bifidobacterium


text: Quadram Bioscience Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human gut

characteristic: environment (biome)

text: infant stool

characteristic: environment (feature)

text: faeces

text: United Kingdom

text: human-associated

text: metagenome

text: Bifidobacterium breve

text: Three full term infant stool analysis

text: Bifidobacterium breve

text: illumina MiSeq

text: Infant stool bifidobacterium


text: Quadram Bioscience Institute

text: public

text: human gut

text: infant stool

text: faeces

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Bifidobacterium longum subsp. infantis

characteristic: organism

text: Three full term infant stool analysis

characteristic: project name

text: Bifidobacterium longum subsp. infantis

text: illumina MiSeq

text: Infant stool bifidobacterium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEAGASC

characteristic: INSDC center name

text: public

characteristic: description

text: Human stool

text: waste

text: feces

text: Ireland

text: human-gut

characteristic: human gut environmental package

text: metagenome

text: gut metagenome

text: gut metagenome

text: Shotgun Metagenomic

characteristic: sequencing method

text: Subject Microbiome

characteristic: title


Oryza sativa cv. Basmati 334

text: NEW YORK UNIVERITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Oryza sativa cv. Basmati 334

tag: Namespace:NEW YORK UNIVERITY

characteristic: Submitter Id

characteristic: collection date

text: rice

characteristic: common name

text: O. sativa cv. Basmati 334 (IRGC 27819) nanopore sequencing

characteristic: estimated size

text: Pakistan

characteristic: geographic location (longitude)

text: 12h day-12h night photoperiod at 30°C. Plants were kept in the dark in a growth cabinet under the same climatic conditions for four days prior to tissue harvesting.

characteristic: isolation and growth condition

characteristic: number of replicons

text: Oryza sativa

text: Bamati 334

characteristic: organism common name

text: 1 month old

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Leaf

characteristic: plant structure

characteristic: ploidy

text: Oryza sativa

text: Oryza sativa Basmati genome sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Institute of Geochemistry, Chinese Academy of Sciences

text: farmland

characteristic: environment (biome)

text: dry land

characteristic: environment (feature)

text: Soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: organism

text: Impact of six years of biochar application on soil microbial community compositions in rhizosphere and bulk soils of a karst region in southwest China

characteristic: project name

text: soil metagenome

text: Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: The calcareous soil amended with biochar in karst regions

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Geochemistry, Chinese Academy of Sciences

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: farmland

text: dry land

text: Soil

text: China

characteristic: geographic location (longitude)

text: metagenome

text: soil metagenome

text: soil metagenome

text: Miseq

text: soil


text: Cell line

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Cell line

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: Tasmanian devil

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Tasmanian devil

text: Sarcophilus harrisii

characteristic: organism

text: Sarcophilus harrisii

characteristic: title


text: female

characteristic: ArrayExpress-SEX

text: Tasmanian devil

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Tasmanian devil

text: Female

characteristic: gender

text: Sarcophilus harrisii

text: Sarcophilus harrisii


text: male

text: Tasmanian devil

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tasmanian devil

text: Male

text: Sarcophilus harrisii

text: Sarcophilus harrisii


characteristic: ENA-LAST-UPDATE

text: UCSF

text: public

text: 12 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Cell suspensions were prepared from lungs dissociated from bleomycin treated mice and control mice and single cell mRNAseq libraries were generated with Drop-seq. Male 129S1 mice, age 10-12 weeks Intratracheally installed with bleomycin (3 units/kg) (Bleo1-3) or water (Control 1-6) 2 weeks before sacrification. Drop-seq protocol Libraries were prepared with Drop-seq protocol

characteristic: description

text: fibrosis

characteristic: disease

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: bleomycin; 3 units per kilogram

characteristic: stimulus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UCSF

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 10 to 12

text: ArrayExpress

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: male

characteristic: title


CPARV

characteristic: ENA-LAST-UPDATE

text: BANG

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CPARV

characteristic: Submitter Id

text: C. parvicauda NIC534

text: Caenorhabditis sp. 21 LS-2015

text: Caenorhabditis sp. 21 LS-2015

text: CPARV


CPANA

text: BANG

text: public

text: CPANA

text: C. panamensis (sp. 28) QG2080

characteristic: description

text: Caenorhabditis sp. 28 LS-2018

text: Caenorhabditis sp. 28 LS-2018

text: CPANA


text: MPICE

text: public

text: Mouse carcasses were swabbed and total RNA was isolated from these swabs. The mouse carcasses were either tended by the beetle Nicrophorus vespilloides (performing parental care) - or were obtained from untended carcasses. Total RNA was depleted for ribosomal RNA and subsequently split into the poly(A)-plus and poly(A)-minus fractions. With those two fractions separate RNAseq libraries were constructed and sequenced using an Illumina HiSeq 3000 platform.

text: Total RNA isolated from mouse carcasses

characteristic: isolation source

text: Nicrophorus vespilloides

text: Nicrophorus vespilloides

text: Nicrophorus vespilloides tended or untended mouse carcass samples


CUTEL

text: BANG

text: public

text: CUTEL

text: C. uteleia (sp. 31) JU2585

text: Caenorhabditis sp. 31 LS-2015

text: Caenorhabditis sp. 31 LS-2015

text: CUTEL


CZANZ

text: BANG

text: public

text: CZANZ

text: Caenorhabditis zanzibari (sp. 26) JU2190

text: Caenorhabditis sp. 26 LS-2015

text: Caenorhabditis sp. 26 LS-2015

text: CZANZ


CSULS

text: BANG

text: public

text: CSULS

text: Caenorhabditis sulstoni (sp. 32) JU2788

text: Caenorhabditis sp. 32 LS-2015

text: Caenorhabditis sp. 32 LS-2015

text: CSULS


text: BANG

text: public

text: Caenorhabditis becei (sp. 29) QG2083

text: Caenorhabditis sp. 29 LS-2018

text: Caenorhabditis sp. 29 LS-2018


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_39222580-e9f4-4a84-ab66-bcd473448150

tag: Namespace:Public Health Agency of Sweden

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_FOHM_73511dc1-6812-4e9e-b54b-9e44eec3c501

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-LAST-UPDATE

text: OX

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: broker name

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

characteristic: title


CTRIB

text: BANG

text: public

characteristic: SRA accession

text: CTRIB

characteristic: Submitter Id

text: Caenorhabditis tribulationis (sp. 40) JU2818

characteristic: description

text: Caenorhabditis sp. 40 LS-2015

text: Caenorhabditis sp. 40 LS-2015

characteristic: strain

text: CTRIB


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_de5a6b3d-2a0e-47e4-8394-06498d622723

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

text: Listeria monocytogenes

text: Listeria monocytogenes

text: Listeria monocytogenes


E-MTAB-7158:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 1

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: Protocols: RNA was isolated from tissue of the main shoot apices harvested from transgenic barley Ubi::HvFT3 and null segregant plants grown under long (16h/8h, light/dark) and short day (8h/16h, light/dark) conditions. Apex tissue was harvested at the spikelet initiation and lemma primordium stages two hours before the end of the light period. Leaves surrounding the apex were removed manually using a microsurgical stab knife. For each of three biological replicates at least 10 apices were pooled. Wild type Golden Promise, transgenic Ubi::HvFT3 and null segregant plants were grown under long (16h/8h, light/dark) and short day (8h/16h, light/dark) conditions in a controlled plant chamber (20°C day/16°C night) and in soil (Einheitserde). For RNA isolation, the pooled MSA were ground, dissolved in 500 mL TRIzol reagent (Invitrogen), and incubated for 5 min at room temperature. Next, 100 mL of chloroform was added, and the sample was homogenized, incubated for 2 min, and centrifuged for 15 min at 4°C. After phase separation, isopropanol was added to the aqueous phase, which was subsequently incubated for 10 min at room temperature and further purified using an RNA easy Micro Kit (Qiagen). Before RNA sequencing, the residual DNA was removed using a DNA-free kit (Ambion), and the quality of the RNA was tested using a bio analyzer (Agilent). The Illumina cDNA libraries were prepared according to the TruSeq RNA sample preparation (version 2; Illumina).

text: flower development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

characteristic: organism part

text: wild type

characteristic: phenotype

text: main shoot

characteristic: sampling site

text: Hordeum vulgare subsp. vulgare

text: Sample 1


E-MTAB-7158:Sample 2

characteristic: ENA-LAST-UPDATE

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7158:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domesticated barley

text: Golden Promise

characteristic: description

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 2

characteristic: title


E-MTAB-7158:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 3

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 3


E-MTAB-7158:Sample 4

text: Heinrich-Heine-Universitat Dusseldorf

text: public

text: E-MTAB-7158:Sample 4

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: flower development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

characteristic: organism part

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 4


E-MTAB-7158:Sample 5

characteristic: ENA-LAST-UPDATE

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7158:Sample 5

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

characteristic: phenotype

text: main shoot

characteristic: sampling site

text: Hordeum vulgare subsp. vulgare

text: Sample 5


E-MTAB-7158:Sample 6

text: Heinrich-Heine-Universitat Dusseldorf

text: public

characteristic: SRA accession

text: E-MTAB-7158:Sample 6

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domesticated barley

text: Golden Promise

characteristic: description

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 6


E-MTAB-7158:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

text: public

text: E-MTAB-7158:Sample 7

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 7

characteristic: title


E-MTAB-7158:Sample 8

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 8

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: flower development stage

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 8


E-MTAB-7158:Sample 9

characteristic: ENA-LAST-UPDATE

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7158:Sample 9

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

characteristic: organism part

text: wild type

characteristic: phenotype

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 9


E-MTAB-7158:Sample 10

text: Heinrich-Heine-Universitat Dusseldorf

text: public

characteristic: SRA accession

text: E-MTAB-7158:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domesticated barley

text: Golden Promise

characteristic: description

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

characteristic: sampling site

text: Hordeum vulgare subsp. vulgare

text: Sample 10


E-MTAB-7158:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

text: public

text: E-MTAB-7158:Sample 11

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 11


E-MTAB-7158:Sample 12

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 12

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: flower development stage

characteristic: developmental stage

text: wild type genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: wild type

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 12

characteristic: title


E-MTAB-7158:Sample 13

characteristic: ENA-LAST-UPDATE

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7158:Sample 13

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

characteristic: organism part

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 13


E-MTAB-7158:Sample 14

text: Heinrich-Heine-Universitat Dusseldorf

text: public

characteristic: SRA accession

text: E-MTAB-7158:Sample 14

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domesticated barley

text: Golden Promise

characteristic: description

text: flower development stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

characteristic: phenotype

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 14


E-MTAB-7158:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

text: public

text: E-MTAB-7158:Sample 15

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

text: main shoot

characteristic: sampling site

text: Hordeum vulgare subsp. vulgare

text: Sample 15


E-MTAB-7158:Sample 16

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 16

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: flower development stage

characteristic: developmental stage

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 16


E-MTAB-7158:Sample 17

characteristic: ENA-LAST-UPDATE

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7158:Sample 17

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 17

characteristic: title


E-MTAB-7158:Sample 18

text: Heinrich-Heine-Universitat Dusseldorf

text: public

characteristic: SRA accession

text: E-MTAB-7158:Sample 18

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domesticated barley

text: Golden Promise

characteristic: description

text: flower development stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

characteristic: organism part

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 18


E-MTAB-7158:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

text: public

text: E-MTAB-7158:Sample 19

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

characteristic: phenotype

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 19


E-MTAB-7158:Sample 20

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 20

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: flower development stage

characteristic: developmental stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

text: main shoot

characteristic: sampling site

text: Hordeum vulgare subsp. vulgare

text: Sample 20


E-MTAB-7158:Sample 21

characteristic: ENA-LAST-UPDATE

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7158:Sample 21

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

characteristic: genotype

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 21


E-MTAB-7158:Sample 22

text: Heinrich-Heine-Universitat Dusseldorf

text: public

characteristic: SRA accession

text: E-MTAB-7158:Sample 22

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: domesticated barley

text: Golden Promise

characteristic: description

text: flower development stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 22

characteristic: title


E-MTAB-7158:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC center name

text: public

text: E-MTAB-7158:Sample 23

text: ArrayExpress

text: domesticated barley

text: Golden Promise

text: flower development stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

characteristic: organism part

text: FT3 overexpression

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 23


E-MTAB-7158:Sample 24

text: Heinrich-Heine-Universitat Dusseldorf

characteristic: INSDC first public

text: public

text: E-MTAB-7158:Sample 24

text: ArrayExpress

text: domesticated barley

characteristic: common name

text: Golden Promise

characteristic: cultivar

text: flower development stage

characteristic: developmental stage

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: shoot apex

text: FT3 overexpression

characteristic: phenotype

text: main shoot

text: Hordeum vulgare subsp. vulgare

text: Sample 24


text: Pseudomonas aeruginosa

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: subject id


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Erysipelothrix rhusiopathiae

text: United Kingdom: London

characteristic: country

characteristic: culture collection

text: disease

characteristic: host status

text: Spleen

characteristic: isolation source

text: Erysipelothrix rhusiopathiae

characteristic: organism

text: Erysipelothrix rhusiopathiae

text: not available: to be reported later

characteristic: serovar

text: Pig

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Rikenella microfusus

characteristic: common name

text: not available: to be reported later

text: Caecum

text: Rikenella microfusus

text: Rikenella microfusus

text: not available: to be reported later

text: Bird (Quail)

characteristic: title


characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Neisseria animaloris

text: not available: to be reported later

text: Thumb

text: Neisseria animaloris

text: Neisseria animaloris

text: not available: to be reported later

text: Human


text: SC

text: public

characteristic: collection date

text: Legionella adelaidensis

text: Australia: Adelaide

characteristic: country

characteristic: culture collection

text: Cooling tower water

characteristic: isolation source

text: Legionella adelaidensis

characteristic: organism

text: Legionella adelaidensis

text: not available: to be reported later

text: environmental


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Campylobacter insulaenigrae

text: United Kingdom

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

text: Campylobacter insulaenigrae

text: Campylobacter insulaenigrae

text: not available: to be reported later

characteristic: serovar

text: Marine

characteristic: specific host

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: [Eubacterium] infirmum

characteristic: common name

text: not available: to be reported later

text: Periodontal pockets

text: [Eubacterium] infirmum

text: [Eubacterium] infirmum

text: not available: to be reported later

text: Human

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Parabacteroides merdae

text: not available: to be reported later

text: not available: to be reported later

text: Parabacteroides merdae

text: Parabacteroides merdae

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Fusobacterium naviforme

characteristic: culture collection

text: disease

text: Exudate from lesion

characteristic: isolation source

text: Fusobacterium naviforme

characteristic: organism

text: Fusobacterium naviforme

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Peptoniphilus lacrimalis

text: not available: to be reported later

characteristic: host status

text: Eye

text: Peptoniphilus lacrimalis

text: Peptoniphilus lacrimalis

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Tsukamurella pulmonis

characteristic: common name

text: Canada: Wingham, Ontario

characteristic: country

text: not available: to be reported later

text: not available: to be reported later

text: Tsukamurella pulmonis

text: Tsukamurella pulmonis

text: not available: to be reported later

text: Human

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Tsukamurella tyrosinosolvens

text: Germany

text: not available: to be reported later

text: Sputum

text: Tsukamurella tyrosinosolvens

text: Tsukamurella tyrosinosolvens

text: not available: to be reported later

text: Human (92 yr old Woman)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Chryseobacterium antarcticum

text: Antarctica: Near King Sejong Station

characteristic: culture collection

text: Soil sample of penguin habitats

characteristic: isolation source

text: Chryseobacterium antarcticum

characteristic: organism

text: Chryseobacterium antarcticum

text: not available: to be reported later

text: environmental


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Chryseobacterium balustinum

text: disease

characteristic: host status

text: Heart blood

text: Chryseobacterium balustinum

text: Chryseobacterium balustinum

text: not available: to be reported later

characteristic: serovar

text: Fish

characteristic: specific host

characteristic: strain


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Alysiella crassa

characteristic: common name

text: not available: to be reported later

text: Saliva

text: Alysiella crassa

text: Alysiella crassa

text: not available: to be reported later

text: Sheep

characteristic: title


characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Parvimonas micra

text: not available: to be reported later

text: not available: to be reported later

text: Parvimonas micra

text: Parvimonas micra

text: not available: to be reported later

text: not available: to be reported later


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Propionibacterium australiense

text: Australia: Queensland

characteristic: country

characteristic: culture collection

text: not available: to be reported later

text: Granulomatous lesion

characteristic: isolation source

text: Propionibacterium australiense

characteristic: organism

text: Propionibacterium australiense

text: not available: to be reported later

text: Cattle


text: Pseudomonas aeruginosa

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: subject id


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Acidipropionibacterium jensenii

characteristic: common name

text: Buttermilk

text: Acidipropionibacterium jensenii

text: Acidipropionibacterium jensenii

text: not available: to be reported later

characteristic: serovar

text: environmental

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Deinococcus radiophilus

text: India: Bombay

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

text: Deinococcus radiophilus

text: Deinococcus radiophilus

text: not available: to be reported later

text: Bird (Bombay duck)

characteristic: title


CWAIT

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BANG

characteristic: INSDC center name

text: public

text: CWAIT

text: Caenorhabditis waitukubuli (sp. 39) NIC564

characteristic: description

text: Caenorhabditis sp. 39 LS-2015

characteristic: organism

text: Caenorhabditis sp. 39 LS-2015

text: CWAIT


CQUIO

text: BANG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CQUIO

text: Caenorhabditis quiockensis (sp. 38) JU2809

text: Caenorhabditis sp. 38 MB-2015

text: Caenorhabditis sp. 38 MB-2015

text: CQUIO


text: Betta splendens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Siamese fighting fish

characteristic: common name

text: Betta splendens

text: Betta splendens

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF LIVERPOOL

text: bread wheat

text: Chinese Spring x Paragon JIC RIL population

text: Triticum aestivum

text: Triticum aestivum

text: CS x Paragon RIL 0004 F8


text: UNIVERSITY OF LIVERPOOL

text: public

characteristic: Submitter Id

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: CS x Paragon RIL 0005 F8