characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11284:11284.vole.A128.sputum.b

text: Adult

text: Not collected

characteristic: allergy

characteristic: anonymized name

text: Not collected

characteristic: bmi

text: Not collected

characteristic: collection time

text: Not collected

characteristic: day

text: Not collected

text: MR

characteristic: description

text: TRUE

text: Not collected

characteristic: dob

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

text: saliva

text: Not collected

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: Not collected

text: UBERON:respiratory system

text: UBERON:sputum

text: UBERON:lung

text: human

text: Homo sapiens

text: vole

characteristic: host subject id

text: years

text: cm

text: kg

text: Aztreonam

characteristic: inhaledanti

text: Not collected

characteristic: latitude

text: Conrad

text: Not collected

text: human oral metagenome

text: A

text: UCSDMI

text: TRUE

text: E

text: Not collected

text: mouth rinse

text: human oral metagenome

text: male

text: CF cross sectional


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: qiita_sid_11284:11284.wahoo.An320.sputum

characteristic: Submitter Id

text: Adult

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Spu

text: TRUE

text: Not collected

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-associated

characteristic: env package

text: mucus

text: Not collected

characteristic: ethnicity

text: female

characteristic: gender

text: USA:CA:San Diego

text: Not collected

characteristic: host age

text: UBERON:respiratory system

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:sputum

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: wahoo

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Aztreonam

text: Not collected

text: Conrad

text: Not collected

text: human lung metagenome

text: A

text: UCSDMI

text: TRUE

text: B

text: Not collected

text: sputum

text: human lung metagenome

text: female

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11284:11284.wahoo.Dn289.sputum

text: Adult

text: Not collected

characteristic: allergy

characteristic: anonymized name

text: Not collected

text: Not collected

characteristic: bmi

text: Not collected

characteristic: collection time

text: Not collected

characteristic: day

text: Not collected

text: Spu

characteristic: description

text: TRUE

text: Not collected

characteristic: dob

text: Not collected

text: Not collected

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

text: mucus

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: USA:CA:San Diego

characteristic: geo loc name

text: Not collected

text: Not collected

text: UBERON:respiratory system

text: Not collected

text: UBERON:sputum

text: UBERON:lung

text: human

text: Not collected

text: Homo sapiens

text: wahoo

characteristic: host subject id

text: Not collected

text: years

text: cm

text: kg

text: Not collected

text: Not collected

characteristic: inhaledanti

text: Not collected

characteristic: latitude

text: Conrad

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: human lung metagenome

text: D

text: UCSDMI

text: TRUE

text: Not collected

text: Not collected

text: sputum

text: human lung metagenome

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: CF cross sectional

text: Not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: qiita_sid_11284:11284.walrus.Un124.sputum

characteristic: Submitter Id

text: Adult

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Spu

text: TRUE

text: Not collected

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-associated

characteristic: env package

text: mucus

text: Not collected

characteristic: ethnicity

text: female

characteristic: gender

text: USA:CA:San Diego

text: Not collected

characteristic: host age

text: UBERON:respiratory system

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:sputum

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: walrus

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: u

text: Not collected

text: Conrad

text: Not collected

text: human lung metagenome

text: Not collected

text: UCSDMI

text: TRUE

text: D

text: Not collected

text: sputum

text: human lung metagenome

text: female

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11284:11284.whale.D2.mouth.rinse

text: Adult

text: Not collected

characteristic: allergy

characteristic: anonymized name

text: Not collected

characteristic: bmi

text: Not collected

characteristic: collection time

text: Not collected

characteristic: day

text: Not collected

text: MR

characteristic: description

text: TRUE

text: Not collected

characteristic: dob

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

text: saliva

text: Not collected

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: Not collected

text: UBERON:respiratory system

text: UBERON:sputum

text: UBERON:lung

text: human

text: Homo sapiens

text: whale

characteristic: host subject id

text: years

text: cm

text: kg

text: None Prescribed

characteristic: inhaledanti

text: Not collected

characteristic: latitude

text: Conrad

text: Not collected

text: human oral metagenome

text: D

text: UCSDMI

text: TRUE

text: D

text: Not collected

text: mouth rinse

text: human oral metagenome

text: male

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Adult

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Spu

text: TRUE

text: Not collected

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-associated

characteristic: env package

text: mucus

text: Not collected

characteristic: ethnicity

text: female

characteristic: gender

text: USA:CA:San Diego

text: Not collected

characteristic: host age

text: UBERON:respiratory system

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:sputum

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: whale

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Tobramycin

text: Not collected

text: Conrad

text: Not collected

text: human lung metagenome

text: D

text: UCSDMI

text: TRUE

text: C

text: Not collected

text: sputum

text: human lung metagenome

text: female

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Adult

text: Not collected

characteristic: allergy

characteristic: anonymized name

text: Not collected

characteristic: bmi

text: Not collected

characteristic: collection time

text: Not collected

characteristic: day

text: Not collected

text: Spu

characteristic: description

text: TRUE

text: Not collected

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

text: mucus

text: Not collected

text: female

text: USA:CA:San Diego

characteristic: geo loc name

text: Not collected

text: UBERON:respiratory system

text: UBERON:sputum

text: UBERON:lung

text: human

text: Homo sapiens

text: wolf

characteristic: host subject id

text: years

text: cm

text: kg

text: None Prescribed

characteristic: inhaledanti

text: Not collected

characteristic: latitude

text: Conrad

text: Not collected

text: human lung metagenome

text: D

text: UCSDMI

text: TRUE

text: C

text: Not collected

text: sputum

text: human lung metagenome

text: female

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: qiita_sid_11284:11284.wolverine.Dn362.sputum

characteristic: Submitter Id

text: Adult

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Not collected

text: Spu

text: TRUE

text: Not collected

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-associated

characteristic: env package

text: mucus

text: Not collected

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

text: Not collected

characteristic: host age

text: UBERON:respiratory system

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:sputum

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

text: wolverine

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: None Prescribed

text: Not collected

text: Conrad

text: Not collected

text: human lung metagenome

text: D

text: UCSDMI

text: TRUE

text: D

text: Not collected

text: sputum

text: human lung metagenome

text: male

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_11284:11284.zebra.Cn271.sputum

text: Adult

text: Not collected

characteristic: allergy

characteristic: anonymized name

text: Not collected

characteristic: bmi

text: Not collected

characteristic: collection time

text: Not collected

characteristic: day

text: Not collected

text: Spu

characteristic: description

text: TRUE

text: Not collected

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-associated

text: mucus

text: Not collected

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: Not collected

text: UBERON:respiratory system

text: UBERON:sputum

text: UBERON:lung

text: human

text: Homo sapiens

text: zebra

characteristic: host subject id

text: years

text: cm

text: kg

text: Aztreonam

characteristic: inhaledanti

text: Not collected

characteristic: latitude

text: Conrad

text: Not collected

text: human lung metagenome

text: C

text: UCSDMI

text: TRUE

text: D

text: Not collected

text: sputum

text: human lung metagenome

text: male

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

characteristic: env package

text: control blank

text: USA:CA:San Diego

text: days

characteristic: longitude

text: metagenome

characteristic: organism

text: UCSD

text: TRUE

text: control blank

characteristic: sample type

text: metagenome

characteristic: title


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: background

text: Leichtag

characteristic: birthplace

characteristic: cage number

text: FALSE

characteristic: cohoused

text: diet-dependent changes in gut microbiome

characteristic: description

text: corn starch

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: Leichtag

characteristic: facility

text: MUP-uPA

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

text: 1 vs 2; 1 vs 5; 1 vs 3

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: days

text: mouse gut metagenome

text: UCSD

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: background

text: Leichtag

characteristic: birthplace

characteristic: cage number

text: FALSE

characteristic: cohoused

text: corn starch

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Leichtag

text: MUP-uPA

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Mus musculus

characteristic: host subject id

text: days

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Leichtag

text: FALSE

characteristic: description

text: glucose ABX

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: Leichtag

characteristic: facility

text: MUP-uPA

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: days

text: mouse gut metagenome

text: UCSD

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: background

text: Leichtag

characteristic: birthplace

characteristic: cage number

text: FALSE

characteristic: cohoused

text: high fructose

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Leichtag

text: MUP-uPA

text: USA:CA:San Diego

text: 5 vs 6

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Mus musculus

characteristic: host subject id

text: days

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Leichtag

text: FALSE

characteristic: description

text: high fructose

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: Leichtag

characteristic: facility

text: MUP-uPA

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: days

text: mouse gut metagenome

text: UCSD

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: background

text: Leichtag

characteristic: birthplace

characteristic: cage number

text: FALSE

characteristic: cohoused

text: corn starch

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

characteristic: env package

text: feces

text: Leichtag

text: MUP-uPA

text: USA:CA:San Diego

text: 4 vs 2; 4 vs 5; 4 vs 6

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Mus musculus

characteristic: host subject id

text: days

characteristic: latitude

characteristic: longitude

text: mouse gut metagenome

characteristic: organism

text: UCSD

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: Leichtag

text: FALSE

characteristic: description

text: high fructose ABX

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

text: feces

text: Leichtag

characteristic: facility

text: MUP-uPA

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: days

text: mouse gut metagenome

text: UCSD

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Cornell University

characteristic: Submitter Id

characteristic: collection date

text: marine metagenome

characteristic: common name

text: ocean

characteristic: environment (biome)

text: ocean

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

text: A Microbial Perspective on Marine-Terrestrial Linkages

characteristic: project name

text: marine metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cornell University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: aquatic metagenome

characteristic: common name

characteristic: description

text: stream

text: stream

text: stream

text: Canada

text: mimarks-survey

text: aquatic metagenome

text: aquatic metagenome

text: soil

text: 16S rRNA gene


text: Cornell University

text: public

text: soil metagenome

text: forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: organism

characteristic: project name

text: soil metagenome

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZURICH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF ZURICH

characteristic: Submitter Id

text: Blumeria graminis f. sp. tritici

text: Blumeria graminis f. sp. tritici

text: Blumeria graminis f.sp. tritici

characteristic: title


forest soil 1

text: lu

text: public

text: forest soil 1

characteristic: collection date

text: Phoebe bournei plantation of subtropical China

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil


forest soil 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

text: public

text: forest soil 2

text: forest

text: soil

text: China

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: charcoal impact on forest soil

characteristic: project name

text: metagenome

text: Hiseq 2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: charcoal impact on forest soil


forest soil 3

text: lu

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: forest soil 3

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: forest

text: soil

text: China

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil

characteristic: title


forest soil 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

text: public

text: forest soil 4

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil


forest soil 5

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: forest soil 5

text: forest

text: soil

text: China

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: charcoal impact on forest soil

characteristic: project name

text: metagenome

text: Hiseq 2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: charcoal impact on forest soil


forest soil 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: forest soil 6

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: forest

text: soil

text: China

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil

characteristic: title


forest soil 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

text: public

text: forest soil 7

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil


forest soil 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: forest soil 8

text: forest

text: soil

text: China

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: charcoal impact on forest soil

characteristic: project name

text: metagenome

text: Hiseq 2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: charcoal impact on forest soil


forest soil 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: forest soil 9

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: forest

text: soil

text: China

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil

characteristic: title


forest soil 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

text: public

text: forest soil 10

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil


forest soil 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: forest soil 11

text: forest

text: soil

text: China

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: charcoal impact on forest soil

characteristic: project name

text: metagenome

text: Hiseq 2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: charcoal impact on forest soil


forest soil 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: forest soil 12

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: forest

text: soil

text: China

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil

characteristic: title


forest soil 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

text: public

text: forest soil 13

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil


forest soil 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: forest soil 14

text: forest

text: soil

text: China

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: charcoal impact on forest soil

characteristic: project name

text: metagenome

text: Hiseq 2500

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: charcoal impact on forest soil


forest soil 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: lu

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: forest soil 15

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

text: forest

text: soil

text: China

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil

characteristic: title


forest soil 16

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: lu

text: public

text: forest soil 16

text: forest

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: metagenome

text: charcoal impact on forest soil

text: metagenome

text: Hiseq 2500

text: soil

text: charcoal impact on forest soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Hunan University of Science and Engineering

text: human feces

text: human feces

text: human feces

text: Japan

text: human-gut

characteristic: human gut environmental package

text: mimarks-survey

characteristic: investigation type

text: Bifidobacterium longum

characteristic: organism

text: genome sequence of Bifidobacterium longum BB-79

characteristic: project name

text: Bifidobacterium longum

text: Illumina

characteristic: sequencing method

text: An acid exopolysaccharide producing bifidobacterium longum isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

text: Endo agar bacterial suspension from healthy stool sample

characteristic: description

text: human gut

characteristic: environment (biome)

text: human gut

text: feces

text: Russia

text: human-gut

text: metagenome

text: Escherichia coli

text: E. coli diversity in healthy and IBD human gut

text: Escherichia coli

text: Illumina Miseq

text: E. coli single strains and Endo agar suspensions

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: INSDC center name

text: public

text: Endo agar bacterial suspension from CD stool sample

text: human gut

text: human gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: Escherichia coli

text: Escherichia coli

text: Illumina Miseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: INSDC first public

text: public

text: E. coli strain from healthy stool sample

text: human gut

text: human gut

text: feces

text: Russia

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Escherichia coli

characteristic: organism

characteristic: project name

text: Escherichia coli

text: Illumina Miseq

characteristic: sequencing method

text: E. coli single strain from healthy individual


text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: E. coli strain from CD stool sample

characteristic: description

text: human gut

characteristic: environment (biome)

text: human gut

text: feces

text: Russia

text: human-gut

text: metagenome

text: Escherichia coli

text: Escherichia coli

text: Illumina Miseq

text: E. coli single strain from CD sample

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KAZAN (VOLGA REGION) FEDERAL UNIVERSITY

characteristic: INSDC center name

text: public

text: human gut

text: human gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: Escherichia coli

text: Escherichia coli

text: Illumina Miseq

text: E. coli single strain from CD sample


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: subject id


text: Penn State University

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Penn State University

characteristic: Submitter Id

characteristic: collection date

text: Coral

characteristic: environment (biome)

text: Coral

text: Coral

text: Yes

characteristic: environmental sample

text: Australia

text: coral metagenome

characteristic: pcr primers

text: coral metagenome

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Pirbright Institute

characteristic: INSDC center name

text: public

tag: Namespace:Pirbright Institute

text: Richard Kock, Royal Veterinary College, London

characteristic: collected by

text: metagenomics data from blood spot taken from Saiga antelope during 2015 mass die-off

characteristic: description

text: No

text: Kazakhstan

characteristic: geographic location (country and/or sea)

text: 48.0196° N

characteristic: geographic location (latitude)

text: 66.9237° E

characteristic: geographic location (longitude)

text: diseased

characteristic: host health state

text: Saiga tatarica tatarica

characteristic: host scientific name

text: No

characteristic: is the sequenced pathogen host associated?

text: Pasteurella multocida

characteristic: isolate

text: Saiga tatarica tatarica

text: Saiga tatarica tatarica

text: serotype B

characteristic: serovar

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Natural Resources Institute Finland (Luke)

characteristic: Submitter Id

text: cattle

characteristic: common name

text: Bos taurus

characteristic: organism

text: Bos taurus

text: Eastern Finncattle


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Natural Resources Institute Finland (Luke)

characteristic: INSDC center name

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: Eastern Finncattle


text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: Western Fincattle


text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: Yakutian cattle


text: ANSES

text: public

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: Meat products

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes


text: ANSES

text: public

text: France

characteristic: isolate

text: Listeria monocytogenes

text: Listeria monocytogenes


text: ANSES

text: public

text: France

text: Industrial environnement

text: Listeria monocytogenes

text: Listeria monocytogenes

characteristic: title


characteristic: ENA-CHECKLIST

text: ANSES

text: public

text: France

text: Dairy products

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-FIRST-PUBLIC

text: Technische Universitat Munchen - WZW

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: Sequencing and comparative genomics of smut fungi, Ustilago hordei mating type 2

characteristic: description

characteristic: mating type

text: Ustilago hordei

text: Ustilago hordei

characteristic: strain

text: Comparative smut fungi project


text: Quadram Institute Bioscience

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Quadram Institute Bioscience

text: ArrayExpress

characteristic: broker name

text: Protocols: The RNA was stabilized prior to extraction by adding 1/5 vol of phenol (pH 4.3): ethanol (1:9) mixture to 1 vol of bacterial culture then incubating 30 min on ice and finally pelleting the cells for 5 min at 10,000 g at 4ºC. Cell pellets were stored at -80ºC before extraction. Cultures of R. gnavus ATCC 29149 and/or R. bromii L2-63 were performed, at 37C in anaerobic conditions, in a minimum medium called YCFA supplemented with a single carbon source (Glucose, soluble starch or resistant starch). At mid- to late exponential phase, 5mL of culture was collected for total RNA extraction. The RNA extraction was performed by a method using phenol and chloroform and adapted from Sambrook and colleagues (Sambrook et al., 1989). Genomic DNA contamination was removed by DNAse treatment using TURBO DNA-free kit (Life Technologies Ltd, Paisley, UK) according to supplier’s recommendations. The purity, quantity and integrity of the DNase-treated RNA were assessed with NanoDrop 2000 Spectrophotometer and with Agilent RNA 600 Nano kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Stockport, UK). Ribodepletion was then carried out using Ribo-Zero® rRNA Removal kit for bacteria according to supplier’s advice (Illumina, Cambridge, UK); efficiency assessment of the ribodepletion was performed by quantifying RNA before and after rRNA removal using the Qubit RNA HS assay on Qubit® 2.0 fluorometer.The rRNA removal was confirmed with a Nano chip run on a Bioanalyzer 2100 (Agilent). The resulting ribosomal depleted RNA was then fragmented for 8 min at 94ºC using the Elute, Fragment, Prime buffer from Illumina TruSeq RNA kit. These conditions produced final libraries of around 370 bp. The samples were then processed following the standard TruSeq RNA protocol. The 15 Illumina libraries were normalized and equimolar pooled to 11 nM using elution buffer (Qiagen).The library pool was then diluted to 2 nM with NaOH and 5 μL transferred into 995 μL HT1 (Illumina) to give a final concentration of 10 pM. A portion (120 μL) of the diluted library pool was then transferred into a 200 μL-strip tube, spiked with 1% PhiX Control v3 and placed on ice before loading onto the Illumina cBot.

text: wild type genotype

characteristic: genotype

text: Ruminococcus bromii and [Ruminococcus] gnavus co-culture

characteristic: growth condition

text: mixed sample

text: mixed sample

text: mixed sample

text: mixed sample

text: Rb+Rg-RS-B


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: mixed sample

characteristic: organism

text: mixed sample

text: mixed sample

text: mixed sample

text: Rb+Rg-RS-C


characteristic: ENA-CHECKLIST

text: Quadram Institute Bioscience

text: public

text: ArrayExpress

text: wild type genotype

text: mixed sample

text: mixed sample

text: mixed sample

text: mixed sample

text: Rb+Rg-RS-D

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Quadram Institute Bioscience

text: public

text: ArrayExpress

characteristic: description

text: wild type genotype

text: mixed sample

text: mixed sample

text: mixed sample

text: mixed sample

text: Rb+Rg-S-A


text: Quadram Institute Bioscience

text: public

text: ArrayExpress

text: wild type genotype

text: mixed sample

text: mixed sample

text: mixed sample

text: mixed sample

characteristic: strain

text: Rb+Rg-S-C


text: Quadram Institute Bioscience

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild type genotype

text: mixed sample

text: mixed sample

text: mixed sample

text: mixed sample

text: Rb+Rg-S-D


text: Quadram Institute Bioscience

characteristic: INSDC last update

text: public

text: ArrayExpress

text: wild type genotype

text: mono-culture

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Rb-RS-B


text: Quadram Institute Bioscience

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild type genotype

text: mono-culture

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Rb-RS-C


text: Quadram Institute Bioscience

text: public

characteristic: SRA accession

text: ArrayExpress

text: wild type genotype

text: mono-culture

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Rb-RS-D


text: Quadram Institute Bioscience

text: public

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: mono-culture

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Rb-S-A


text: Quadram Institute Bioscience

text: public

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: mono-culture

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Rb-S-C


text: Quadram Institute Bioscience

text: public

text: ArrayExpress

text: wild type genotype

text: mono-culture

characteristic: growth condition

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Ruminococcus bromii

text: Rb-S-D


characteristic: ENA-LAST-UPDATE

text: Quadram Institute Bioscience

text: public

text: ArrayExpress

text: wild type genotype

text: mono-culture

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: ATCC 29149

text: Rg-Glc-A


characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: ArrayExpress

text: wild type genotype

text: mono-culture

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: ATCC 29149

text: Rg-Glc-C


text: Quadram Institute Bioscience

characteristic: INSDC center name

text: public

text: ArrayExpress

text: wild type genotype

text: mono-culture

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: [Ruminococcus] gnavus

text: ATCC 29149

text: Rg-Glc-D


text: Technische Universitat Munchen - WZW

text: public

characteristic: Submitter Id

text: Sequencing and comparative genomics of smut fungi, Ustilago bromivora mating type 2

characteristic: mating type

text: Ustilago bromivora

text: Ustilago bromivora

text: Comparative smut fungi project


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mouse

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: Mouse oesophagus

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mouse oesophagus

text: Mus musculus

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Bioscience Institute

characteristic: INSDC center name

text: public

characteristic: SRA accession

tag: Namespace:Quadram Bioscience Institute

characteristic: collection date

text: Three full term infant stool analysis

characteristic: description

text: human gut

characteristic: environment (biome)

text: infant stool

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: gut metagenome

text: Three infant study

characteristic: project name

text: gut metagenome

text: Amplicon MiSeq

characteristic: sequencing method

text: Three infant study


E-MTAB-7136:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7136:Sample 1

tag: Namespace:Beijing Institute of Basic Medical Sciences

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: lymphocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Stable GM40600- and EGFP-expressing SP 2/0 cells, and the control EGFP-expressing SP 2/0 cells were collected after after cultured for 2 days in fresh medium. Samples were washed twice with PBS and 1 mL of TRIzol per 1 x 107 cell pellets was added and frozen in -80℃. GM40600 cDNA (General Biosystems, Anhui, China) was cloned into lentiviral vector EGFP-expressing LV201 (Fugene Corp., Guangzhou, China) to generate GM40600 protein. Empty LV201 and GM40600-expressing LV201 was transfected into SP 2/0 cells (ATCC® CRL-1581™, https://www.atcc.org/products/all/CRL-1581.aspx), and stable transfectants were identified by EGFP expression and drug selection (Puromycin, Sigma, 10 μg/ml). Stable GM40600-expressing SP 2/0 cells and LV201-transduced SP 2/0 cells were cultured in fresh ATCC-formulated Dulbecco's Modified Eagle's Medium (Catalog No. 30-2002) containing 10% FBS, 2 mM glutamine, penicillin (100 IU/ml), streptomycin (100 ug/ml), and 50 mM 2-mercaptoethanol. Cells were collected on ice after cultured for 2 days in fresh medium. Data were aligned using STAR with options --outFilterScoreMinOverLread 0.4 --outFilterMatchNminOverLread 0.4, against the C3H/HeJ genome as a reference (ftp://ftp.ensembl.org/pub/release-89/fasta/mus_musculus_c3hhej/dna/Mus_musculus_c3hhej.C3H_HeJ_v1.dna_sm.toplevel.fa.gz). Total RNA from cells was isolated and purified using the RNeasy Mini Kit (Qiagen, Venlo, Netherlands). All RNA content in the samples was measured with a NanoDrop®ND-1000 spectrophotometer, and the RNA quality was assessed using RNA 6000 NanoChips with the Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA). Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina).

text: multiple myeloma

characteristic: disease

text: empty vector LV201

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed spleen and skin

characteristic: organism part

text: empty vector

characteristic: phenotype

text: Mus musculus

text: Sample 1

characteristic: title


E-MTAB-7136:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beijing Institute of Basic Medical Sciences

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-7136:Sample 2

text: ArrayExpress

text: lymphocyte

text: house mouse

characteristic: description

text: multiple myeloma

text: Mus musculus

text: Mus musculus

text: mixed spleen and skin

text: Gm40600 overexpression

text: Mus musculus

text: Sample 2


text: Homo sapiens

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text: SC

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text: Homo sapiens

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text: Homo sapiens

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text: Uppsala University, ICM, Microbiology

text: public

tag: Namespace:Uppsala University, ICM, Microbiology

characteristic: collection date

text: African malaria mosquito

text: Anopheles gut

text: Laboratory

characteristic: environment (biome)

text: Mosquito gut

characteristic: environment (feature)

text: Anopheles gut

characteristic: environment (material)

text: Lebanon

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Anopheles gambiae

text: Anopheles and Aedes associated bacteria, Lebanon

characteristic: project name

text: Anopheles gambiae

text: MiSeq

characteristic: sequencing method

text: Anopheles gut-bacteria


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Uppsala University, ICM, Microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: Asian tiger mosquito

text: Aedes gut

characteristic: description

text: Laboratory

text: Mosquito gut

text: Aedes gut

text: Lebanon

text: host-associated

text: metagenome

text: Aedes albopictus

text: Aedes albopictus

text: MiSeq

text: Aedes gut-bacteria

characteristic: title


text: Uppsala University, ICM, Microbiology

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: Water

text: Laboratory

characteristic: environment (biome)

text: Mosquito rearing pan

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Lebanon

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: MiSeq

text: Larval-water bacteria


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Uppsala University, ICM, Microbiology

text: public

text: Sugar solution

text: Laboratory

text: Sugarpad solution

text: Sugar solution

text: Lebanon

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: food metagenome

characteristic: project name

text: food metagenome

text: MiSeq

characteristic: sequencing method

text: Sugarpad bacteria


characteristic: ENA checklist

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: SRA accession

text: sam_FOHM_d6e73734-60b3-4667-8fcf-3bc90325faa9

tag: Namespace:Public Health Agency of Sweden

text: FOHM

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text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


E-MTAB-7139:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-7139:Sample 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: lymphocyte

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Stable GM6377 OR LOC108167440- and EGFP-expressing SP 2/0 cells, and the control EGFP-expressing SP 2/0 cells were collected after after cultured for 2 days in fresh medium. Samples were washed twice with PBS and 1 mL of TRIzol per 1 x 107 cell pellets was added and frozen in -80℃. GM6377 OR LOC108167440 cDNA (General Biosystems, Anhui, China) was cloned into lentiviral vector EGFP-expressing LV201 (Fugene Corp., Guangzhou, China) to generate GM6377 OR LOC108167440 protein. Empty LV201 and GM6377 OR LOC108167440-expressing LV201 was transfected into SP 2/0 cells (ATCC® CRL-1581™, https://www.atcc.org/products/all/CRL-1581.aspx), and stable transfectants were identified by EGFP expression and drug selection (Puromycin, Sigma, 10 μg/ml). Stable GM6377 OR LOC108167440-expressing SP 2/0 cells and LV201-transduced SP 2/0 cells were cultured in fresh ATCC-formulated Dulbecco's Modified Eagle's Medium (Catalog No. 30-2002) containing 10% FBS, 2 mM glutamine, penicillin (100 IU/ml), streptomycin (100 g/ml), and 50 mM 2-mercaptoethanol. Cells were collected on ice after cultured for 2 days in fresh medium. Data were aligned using STAR with options --outFilterScoreMinOverLread 0.4 --outFilterMatchNminOverLread 0.4, against the C3H/HeJ genome as a reference (ftp://ftp.ensembl.org/pub/release-89/fasta/mus_musculus_c3hhej/dna/Mus_musculus_c3hhej.C3H_HeJ_v1.dna_sm.toplevel.fa.gz). Total RNA from cells was isolated and purified using the RNeasy Mini Kit (Qiagen, Venlo, Netherlands). All RNA content in the samples was measured with a NanoDrop®ND-1000 spectrophotometer, and the RNA quality was assessed using RNA 6000 NanoChips with the Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA). Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina).

characteristic: description

text: multiple myeloma

characteristic: disease

text: empty vector LV201

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed spleen and skin

characteristic: organism part

text: empty vector

characteristic: phenotype

text: Mus musculus

text: Sample 1


E-MTAB-7139:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-7139:Sample 2

text: ArrayExpress

text: lymphocyte

text: house mouse

text: multiple myeloma

text: Mus musculus

text: Mus musculus

text: mixed spleen and skin

text: Gm6377 overexpression

text: Mus musculus

text: Sample 2


E-MTAB-7139:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

text: E-MTAB-7139:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: lymphocyte

text: house mouse

text: multiple myeloma

text: Mus musculus

text: Mus musculus

text: mixed spleen and skin

text: Loc108167440 overexpression

text: Mus musculus

text: Sample 3

characteristic: title


text: public

tag: Namespace:UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

characteristic: collection date

text: Groundwater

characteristic: environment (biome)

text: Groundwater

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Austria

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characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: River Bank Filtrate

characteristic: project name

text: freshwater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: February - Well 3

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

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text: public

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tag: Namespace:Center for Biotechnology, Bielefeld University, Bielefeld, Germany. Leibniz-Institute of Vegetable and Ornamental Crops (IGZ), Großbeeren, Germany

text: ArrayExpress

characteristic: broker name

text: potato

characteristic: common name

text: Arkula

characteristic: cultivar

text: Protocols: 3 and 8 days after innoculation samples were taken from the sprouts. Samples were directly froozen in liquid nitrogen. Sprouts of ten plants per replicate were sampled and pooled. Samples are denominated as following: SPK-PN1-x-Repx and SPK-PN2-x-Repx stands for sprouts without pathogen inoculation sampled at 3 and 8 dpi and SPRs-PN1-x-Repx and SPRs-PN2-x-Repx indicate sprout samples with Rhizoctonia inoculation at 3 and 8 dpi. For the R. solani kontrol 3 samples were extrated from plates grown on PDA agarose. Potato cultivar Arkula tubers (Norika GmbH, Sanitz, Germany) were grown on a cycle of (1 week 8 degrees Celcius, 3 weeks 4 degrees and 3 days 20-22 degrees), until sprouting. 10 mg/L gibberellic acid was applied for 20 minutes. The tubers were grown in 12x12x10 cm pots with quartz sand and grit mixture in the dark at 18 degrees and 80% relative humidity. R. solanig AG3 isolate Ben3 was cultivated on PDA agar plates (PDA, Merck, Germany) at 20-22 degrees Celcius for 5 days. 4 Weeks after transplantation into pots the tubers were innoculated with a 1cm agar plug from the R. solani plates and the tubers were covered with quartz sand. 3 and 8 days after innoculation samples were taken from the sprouts. Each sample was ground using a mixer mill (2 min, 30/s; Retsch MM400, Haan, Germany) with two grinding balls (7 mm, 3 mm; Askubal, Korntal-Münchingen, Germany) under con-stant cooling in liquid nitrogen. Total RNA was extracted from 70-90 mg of ground sprout material (without lesions) using the RNeasy Plant Mini Kit (QIAGEN, Hilden, Germany) including DNase treatment (QI-AGEN). From each biological replicate 3 technical replicates were generated resulting in a total of 36 libraries with the TruSeq® mRNA Sample Preparation Kit (stranded) (Illumina Inc., San Diego, U.S.A.).

characteristic: description

text: 4 weeks after onset of sprouting

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Solanum tuberosum

characteristic: organism

text: Solanum tuberosum

text: tuber sprout

characteristic: organism part

text: Solanum tuberosum


characteristic: ENA-FIRST-PUBLIC

text: Center for Biotechnology, Bielefeld University, Bielefeld, Germany. Leibniz-Institute of Vegetable and Ornamental Crops (IGZ), Großbeeren, Germany

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: potato

text: Arkula

text: 4 weeks after onset of sprouting

text: wild type genotype

text: Solanum tuberosum

text: Solanum tuberosum

text: tuber sprout

text: Solanum tuberosum

characteristic: title


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text: public

text: ArrayExpress

text: potato

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text: 4 weeks after onset of sprouting

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text: Rizoctionia solani AG-3

characteristic: infect

text: Solanum tuberosum

text: Solanum tuberosum

text: tuber sprout

text: Solanum tuberosum


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text: public

characteristic: SRA accession

text: ArrayExpress

text: wild type genotype

text: Rhizoctonia solani AG-3

text: Rhizoctonia solani AG-3

text: whole organism

text: Rhizoctonia solani AG-3


text: UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES,

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characteristic: collection date

text: Groundwater

characteristic: environment (biome)

text: Groundwater

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Austria

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characteristic: geographic location (longitude)

text: metagenome

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text: freshwater metagenome

text: River Bank Filtrate

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text: freshwater metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: February - Well 4

text: water

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text: Groundwater

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text: Water

text: Austria

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text: Illumina MiSeq

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text: Illumina MiSeq

text: April 7th - Well 1 - Triplicate C

text: water


text: public

text: Groundwater

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text: Water

text: Austria

characteristic: geographic location (country and/or sea)

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text: metagenome

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text: River Bank Filtrate

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text: Illumina MiSeq

text: April 7th - Well 2 - Triplicate B

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text: water


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text: Groundwater

characteristic: environment (feature)

text: Water

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text: Austria

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text: River Bank Filtrate

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text: Illumina MiSeq

text: April 7th - Well 2 - Triplicate C

text: water


text: public

text: Groundwater

text: Groundwater

text: Water

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

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text: metagenome

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text: April 7th - Well 3 - Triplicate A

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text: Groundwater

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text: April 7th - Well 3 - Triplicate C

text: water


text: public

text: Groundwater

text: Groundwater

text: Water

text: Austria

characteristic: geographic location (country and/or sea)

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text: Austria

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text: River Bank Filtrate

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text: Illumina MiSeq

text: April 7th - Well 4 - Triplicate B

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text: water


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text: Groundwater

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text: Water

characteristic: environment (material)

text: Austria

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text: River Bank Filtrate

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text: Illumina MiSeq

text: April 7th - Well 4 - Triplicate C

text: water


text: public

text: Groundwater

text: Groundwater

text: Water

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

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text: metagenome

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text: freshwater metagenome

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characteristic: sequencing method

text: April 7th - Well 5 - Triplicate A

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text: public

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text: Groundwater

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text: Austria

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text: River Bank Filtrate

text: freshwater metagenome

text: Illumina MiSeq

text: April 7th - Well 5 - Triplicate B

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text: Groundwater

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text: Water

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text: Austria

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text: Illumina MiSeq

text: April 7th - Well 5 - Triplicate C

text: water


text: public

text: Groundwater

text: Groundwater

text: Water

text: Austria

characteristic: geographic location (country and/or sea)

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text: metagenome

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text: April 7th - Well 6 - Triplicate A

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text: April 7th - Well 6 - Triplicate C

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text: public

text: Groundwater

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text: Water

text: Austria

characteristic: geographic location (country and/or sea)

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text: May 3rd - Well 1 - Triplicate C

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text: public

text: Groundwater

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text: Water

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characteristic: geographic location (country and/or sea)

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text: Groundwater

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text: Illumina MiSeq

text: May 3rd - Well 3 - Triplicate B

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text: May 3rd - Well 3 - Triplicate C

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text: public

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characteristic: geographic location (country and/or sea)

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