text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: restricted

characteristic: collecting institution

text: restricted

characteristic: collector name

text: Fatal Encephalitic Borna Disease Virus 1 Infection Cluster in Solid Organ Transplant Recipients

text: Germany

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: dead

characteristic: host disease outcome

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: brain

characteristic: isolation source host associated

text: Borna disease virus 1

text: Borna disease virus 1


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Friedrich-Loeffler-Institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: restricted

text: restricted

characteristic: description

text: Germany

text: Human

text: dead

text: diseased

text: Homo sapiens

text: female

text: brain

text: Borna disease virus 1

characteristic: organism

text: Borna disease virus 1

characteristic: title


text: Friedrich-Loeffler-Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: restricted

characteristic: collecting institution

text: restricted

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: dead

text: diseased

text: Homo sapiens

text: male

text: kidney

text: Borna disease virus 1

text: Borna disease virus 1


E-MTAB-6509:Sample 1

characteristic: ENA-CHECKLIST

text: Peking University Health Science Center

text: public

text: E-MTAB-6509:Sample 1

tag: Namespace:Peking University Health Science Center

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: Protocols: BYD is a classic traditional Chinese medicine consists of the water extraction of astragalus root, ginseng, processed licorice, and cinnamon at a ratio of 6:2:2:1. Under the deeply anaesthetized condition after echocardiographic examinations, all rats were sacrificed for collecting the heart tissues samples. The myocardial tissues of the ischemic LV and the peri-ischemic rim (an approximately 1 mm rim of normal-appearing tissues) were removed, and the remaining tissues that consisted of non-ischemic LV were obtained. First, the widely used model produced by the occlusion of the left anterior descending coronary artery (LADCA) was employed to induce Myocardial Ischemia in rats. Prior to the operation, the rats were fasted overnight with free access to water. Briefly, an anterior thoracotomy was performed under sterile conditions to open the pericardium and the heart was then rapidly exteriorized. The LADCA was ligated approximately 2-3 mm distal from its origin with the use of a 5-0 polypropylene suture. After surgery, the rats in the sham and model group received the same volume of saline vehicle and the rats in the TCM group received a dose of BYD at 1460mg/kg for one week. The RNA integrity was analyzed on a 1% agarose gel. Beads that contained oligo (dT) were used to isolate the poly mRNA from the total RNA and then the rRNA was subsequently removed. The first strand of cDNA was synthesized by using Random Hexamers and the second strand of cDNA was synthesized by adding buffer, dNTPs, RNase H and DNA Polymerase I, then purified by QIAQuick PCR kit and eluted with EB buffer. The purified double-stranded cDNA is then subjected to end-repair, base A addition and sequencing, followed by agarose gel electrophoresis to recover the target fragment and perform PCR amplification to complete the entire library preparation.

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

characteristic: strain

text: Sample 1


E-MTAB-6509:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Peking University Health Science Center

text: public

characteristic: SRA accession

text: E-MTAB-6509:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

characteristic: description

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 2

characteristic: title


E-MTAB-6509:Sample 3

text: Peking University Health Science Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6509:Sample 3

text: ArrayExpress

text: Norway rat

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 3


E-MTAB-6509:Sample 4

characteristic: ENA-CHECKLIST

text: Peking University Health Science Center

text: public

text: E-MTAB-6509:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 4


E-MTAB-6509:Sample 5

text: Peking University Health Science Center

text: public

text: E-MTAB-6509:Sample 5

text: ArrayExpress

text: Norway rat

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Sprague Dawley

characteristic: strain

text: Sample 5


E-MTAB-6509:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Peking University Health Science Center

text: public

characteristic: SRA accession

text: E-MTAB-6509:Sample 6

text: ArrayExpress

text: Norway rat

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 6


E-MTAB-6509:Sample 7

text: Peking University Health Science Center

text: public

text: E-MTAB-6509:Sample 7

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

characteristic: description

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 7

characteristic: title


E-MTAB-6509:Sample 8

text: Peking University Health Science Center

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6509:Sample 8

text: ArrayExpress

text: Norway rat

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 8


E-MTAB-6509:Sample 9

characteristic: ENA-CHECKLIST

text: Peking University Health Science Center

text: public

text: E-MTAB-6509:Sample 9

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart left ventricle

text: Rattus norvegicus

text: male

text: Sprague Dawley

text: Sample 9


text: Anopheles funestus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

text: Anopheles funestus

text: Anopheles funestus

characteristic: subject id


text: Canis lupus familiaris

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF HELSINKI

characteristic: collection date

text: Pihlajavesi area, Finland

characteristic: isolation source

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: female

characteristic: sex

text: Pusa hispida saimensis

characteristic: sub species

text: Saimaa ringed seal individual #1090


text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Input Ezh2 - RH1_1

characteristic: title


text: male

text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

characteristic: common name

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP Ezh2 - RH1_2


text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: Input Ezh2 + RH1_3


text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP Ezh2 + RH1_4


text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input Suz12 - RH1_5


text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP Suz12 - RH1_6


text: male

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input Suz12 + RH1_7


text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

text: ChIP Suz12 + RH1_8


text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Input 8WG16 - RH1_9


text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP 8WG16 - RH1_10

characteristic: title


text: male

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input 8WG16 + RH1_11


text: male

text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP 8WG16 + RH1_12


text: male

text: Mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input Ezh2 - RH2_13


text: male

text: Mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP Ezh2 - RH2_14


text: male

text: Mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Male

text: Mus musculus

text: Mus musculus

text: Input Ezh2 + RH2_15


text: male

text: Mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP Ezh2 + RH2_16


text: male

text: Mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input Suz12 - RH2_18


text: male

text: Mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP Suz12 - RH2_19


text: male

text: Mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input Suz12 + RH2_20


text: male

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: ChIP Suz12 + RH2_21


text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input 8WG16 - RH2_22


text: male

text: Mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP 8WG16 - RH2_23


text: male

text: Mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: Input 8WG16 + RH2_25


text: male

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: ChIP 8WG16 + RH2_27


text: Cell Line

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Cell Line

characteristic: phenotype

text: Mus musculus


text: Melanoma

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Melanoma

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:NATIONAL INSTITUTE FOR HEALTH AND WELFARE

text: Escherichia coli

text: Escherichia coli

text: STEC


text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: collection date

text: Pihlajavesi area, Finland

characteristic: isolation source

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: male

characteristic: sex

text: Pusa hispida saimensis

characteristic: sub species

text: Saimaa ringed seal individual #1271


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE FOR HEALTH AND WELFARE

text: public

characteristic: INSDC status

text: Escherichia coli

text: Escherichia coli

text: STEC


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Kolovesi, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: female

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #1482


text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Main Haukivesi area, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: male

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #1983


text: UNIVERSITY OF HELSINKI

text: public

text: Southern Saimaa, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: female

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #2259


text: UNIVERSITY OF HELSINKI

text: public

text: Pihlajavesi area, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: female

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #2343


text: UNIVERSITY OF HELSINKI

text: public

text: Southern Saimaa, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: male

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #2357


text: UNIVERSITY OF HELSINKI

text: public

text: Kolovesi, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: female

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #2399


text: Technische Universitat Munchen - WZW

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: Ustilago trichophora is a smut pathogen infecting the grass Echinochloa crus-galli and other members of the genus Echinochloa. U. trichophora induces tumors in its host plant that develop mostly on the stems. The tumor-induction capacity is similar to the related corn smut fungus Ustilago maydis.

characteristic: description

text: Ustilago trichophora

text: Ustilago trichophora

characteristic: strain

text: Sequencing and comparative genomics of Ustilago trichophora NBRC100155


text: UNIVERSITY OF HELSINKI

text: public

text: Southern Saimaa, Finland

text: Pusa hispida saimensis

characteristic: organism

text: Pusa hispida saimensis

text: male

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #2436

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

text: Northern Saimaa, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: male

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #258


text: ANSES

text: public

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

characteristic: isolate

text: Dairy products

characteristic: isolation source

text: Listeria monocytogenes

text: Listeria monocytogenes


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: Kolovesi, Finland

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: male

characteristic: sex

text: Pusa hispida saimensis

characteristic: sub species

text: Saimaa ringed seal individual #292


text: Strongyloides ratti

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Strongyloides ratti

characteristic: common name

text: Strongyloides ratti

text: Strongyloides ratti

characteristic: subject id


text: female

characteristic: ArrayExpress-SEX

text: Strongyloides ratti

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

text: Strongyloides ratti

text: Female

characteristic: gender

text: Strongyloides ratti

characteristic: organism

text: Strongyloides ratti

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

characteristic: collection date

text: Northern Saimaa, Finland

characteristic: isolation source

text: Pusa hispida saimensis

text: Pusa hispida saimensis

text: female

text: Pusa hispida saimensis

text: Saimaa ringed seal individual #819


Hybrid

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Hybrid

text: Ringed seal

text: Stockholm, Sweden

text: Pusa hispida

text: Pusa hispida

text: female

characteristic: sex

text: unspecified

characteristic: sub species

text: Ringed seal hybrid individual


text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #BG-01


name: E-MTAB-6615:P1 mutant beta cell - Biological replicate 1

characteristic: ENA-CHECKLIST

text: Vanderbilt University

text: public

tag: Namespace:Vanderbilt University

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: beta cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: MytDelpanc and MipeGFP islets were collected from mice postnatal day 1. The islets from 2-3 mice of the same genotype were pooled for each sample. Islets were dispersed using trypsin and FACS purified based on eGFP expression. Propidium Iodine was used to select live cells. MytDelpanc genotype: Myt1tm1.1Ggu/tm1.1Ggu;Myt1Ltm1.1Ggu/tm1.1Ggu;St18tm1.1Ggu/tm1.1Ggu; Tg(Pdx1-cre)89.1Dam/+; Tg(Ins1-EGFP)1Hara/J. Myt1tm1.1Ggu/tm1.1Ggu information: http://www.informatics.jax.org/allele/genoview/MGI:3765058?counter=1 and Tg(Pdx1-cre)89.1Dam/+ allele information: http://www.informatics.jax.org/allele/MGI:2684317. The Myt1Ltm1.1Ggu allele has two loxP sites flanking the exons #12 and #13. Cre-mediated inactivation produces an allele that makes no Myt1L protein. The St18tm1.1Ggu allele has two loxP sites flanking the exons #9 and #10. Cre-mediated inactivation produces an allele that makes no St18 protein. Mice used in this experiment contained pancreatic cell specific inactivation of a family of genes, Myt1, Myt1L, and St18. These mutants carried MipeGFP transgene for beta-cell labeling. Total RNA was isolated using TRIzol LS (Invitrogen) and column purification (Zymo Research), according to manufacture's instructions. RNA was DNase-treated (Ambion) and integrity was assessed on the Bioanalyzer (Agilent). The library was constructed using the Illumina TruSeq DNA sample prep kits A&B, FC-121-1001 and FC-121-1002 with the standard Illumina methods (Bentley 2008).

characteristic: description

text: pancreatic specific knockout of Myt1, Myt1L, and St18

characteristic: disease

characteristic: genotype

text: mixed pool of 2-3 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

characteristic: organism part

characteristic: phenotype

text: Mus musculus

text: mixed


name: E-MTAB-6615:P1 mutant beta cell - Biological replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vanderbilt University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: beta cell

text: house mouse

text: Myt1tm1.1Ggu/tm1.1Ggu;Myt1Ltm1.1Ggu/tm1.1Ggu;St18tm1.1Ggu/tm1.1Ggu; Tg(Pdx1-cre)89.1Dam/+; Tg(Ins1-EGFP)1Hara/J

text: mixed pool of 2-3 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: islet of Langerhans

text: Mus musculus

text: mixed

characteristic: title


name: E-MTAB-6615:P1 mutant beta cell - Biological replicate 3

characteristic: ENA-CHECKLIST

text: Vanderbilt University

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: beta cell

text: house mouse

text: mixed pool of 2-3 mice

text: Mus musculus

text: Mus musculus

text: islet of Langerhans

text: Mus musculus

text: mixed

characteristic: sex


text: UNIVERSITY OF HELSINKI

text: public

text: Baltic sea

characteristic: isolation source

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

characteristic: sub species

text: Baltic ringed seal individual #BG-02


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #BG-03


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF HELSINKI

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #BG-09


characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #BG-10


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #BG-12


text: UNIVERSITY OF HELSINKI

characteristic: INSDC first public

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #N3-09


text: academisch medisch centrum

characteristic: INSDC last update

text: public

tag: Namespace:academisch medisch centrum

characteristic: collection date

text: vancomycin resistant Enterococcus faecium

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host

text: Homo sapiens

characteristic: host scientific name

text: Feces

text: Enterococcus faecium

text: Enterococcus faecium

text: VRE


characteristic: ENA-CHECKLIST

text: academisch medisch centrum

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: vancomycin resistant Enterococcus faecium - error: actual sample name is U2-1

text: Netherlands

text: Human

text: Homo sapiens

text: Feces

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

text: VRE

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: academisch medisch centrum

text: public

text: vancomycin resistant Enterococcus faecium - error: actual sample name is U2-2

text: Netherlands

text: Human

text: Homo sapiens

text: Feces

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium

text: VRE


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

characteristic: sub species

text: Baltic ringed seal individual #N7-07


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Baltic sea

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Pusa hispida botnica

text: Baltic ringed seal individual #NN3-07


text: UNIVERSITY OF HELSINKI

text: public

text: gray seal

characteristic: common name

text: Baltic sea

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-01


text: UNIVERSITY OF HELSINKI

text: public

text: gray seal

text: Baltic sea

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-02


text: FONDAZIONE EDMUND MACH

text: public

tag: Namespace:FONDAZIONE EDMUND MACH

text: C57BL/6N male mice (8 weeks old), from Charles River (Calco, Italy and Cedex-L’Arbresle, France) were housed in both ventilated and metabolic cages, in quiet rooms with controlled temperature, humidity, and 12 h light/dark cycle, and fed for 6 weeks either with irradiated diet containing 50% saturated to unsaturated fatty acids (SFA diet) (D12450H, Research Diets Inc., Brogaarden, Gentofte, Denmark; that is equivalent in composition to the low fat diet normally used as control diet in the high fat diet-induced obesity studies) or with an identical, isocaloric, isolipidic, and isonitrogenous diet, in which protein (casein) was almost completely (93.5 %) replaced by defined free essential amino acids (SFA-EAA diet) (D14032501, Research Diets Inc.) or in which casein was completely replaced by its free amino-acids content (SFA-CAA). Fresh fecal samples was collected after 6 weeks and stored at -80°C until processing.

characteristic: description

text: 8 weeks old

characteristic: dev stage

text: mouse gut metagenome

text: mouse gut metagenome

text: male

characteristic: sex

text: feces

characteristic: tissue type

text: Aminoacid-defined diet impact on mice microbiota


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF HELSINKI

text: public

characteristic: INSDC status

characteristic: SRA accession

text: gray seal

text: Baltic sea

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-04


text: UNIVERSITY OF HELSINKI

text: public

characteristic: Submitter Id

text: gray seal

text: Baltic sea

text: Halichoerus grypus

characteristic: organism

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-06

characteristic: title


status: KILLED

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_4e5aa60b-a2e9-448f-91d3-233ca976121c

tag: Namespace:Public Health Agency of Sweden

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


HCC Rat-8-liver

characteristic: ENA-CHECKLIST

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: HCC Rat-8-liver

tag: Namespace:CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: Norway rat

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: liver normal HCC Rat-8 from individual HCC Rat-8. This sample is a unique specimen from this individual.

characteristic: description

text: normal

characteristic: diagnosis

text: HCC Rat-8

characteristic: individual name

text: Rattus norvegicus

text: HCC Rat-8

characteristic: sample name

text: Rattus norvegicus

text: male

characteristic: sex

characteristic: strain

text: liver

characteristic: tissue type

text: not treated

characteristic: treatment agent


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: Centre for Genomic Regulation (CRG)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Centre for Genomic Regulation (CRG)

text: ArrayExpress

characteristic: broker name

text: Protocols: Cells were grown for 24 hours in Hayflick medium at 37C. Described in Yus, E. et al. Impact of genome reduction on bacterial metabolism and its regulation. Science 326, 1263-1268, doi:10.1126/science.1177263 (2009). miRNAeasy kit (Qiagen) mRNA specific RNA-seq (to be published)

characteristic: description

characteristic: genotype

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Dam expression under a weak promoter with random 5' UTR

characteristic: phenotype

text: Mycoplasma pneumoniae


text: Centre for Genomic Regulation (CRG)

text: public

text: ArrayExpress

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: Dam expression under a strong promoter with random 5' UTR

text: Mycoplasma pneumoniae

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: Centre for Genomic Regulation (CRG)

text: public

text: ArrayExpress

text: Syp32-UTR1-UTR8-dam pool

text: Mycoplasma pneumoniae

text: Mycoplasma pneumoniae

text: 8 individual UTR pool

text: Mycoplasma pneumoniae


E-MTAB-6595:Sample 1

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6595:Sample 1

tag: Namespace:Laboratory of Angiogenesis and Vascular Metabolism VIB-KU Leuven Center for Cancer Biology (CCB)

text: 10 to 12

characteristic: age

text: ArrayExpress

text: endothelial cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Mouse endothelial cells were isolated from perfused healthy lungs of CPT1A∆EC mice and their wild-type littermates. Briefly, before starting the perfusion, the mice were anesthetized with Ketamin/Xylasine (500μL/mouse of Ketamine 0.65% / Xylasine 0.05% diluted in saline solution) and once the withdrawal reflex was absent in pelvic limbs, the perfusion procedure was started. Mice were perfused with 5 ml of a water based perfusion buffer containing 1.7 M NaCl, 84 mM KCl, 120 mM Hepes and 1 mM NaOH followed by perfusion with 5 ml of a DMEM based digestion buffer containing 0.1% collagenase II, collagenase I, 2 mM CaCl2, 1% antibiotic/antimycotic, at a perfusion rate of 2 ml/min. Lungs were dissected and further dissociated using the gentleMACS dissociator system. Next, samples were centrifuged, resuspended in 5ml of PBS/0.5% BSA and applied to a pre-separation 70 μm filter. The filtered cells were washed twice with PBS/BSA buffer and endothelial cells were selected with CD31 MicroBeads (Milenyi), further stained with viability dye, CD102-APC and CD45-PeCy7 and the fraction of viable, CD102+ and CD45- cells obtained by FACS sorting was directly collected into Trizol reagent. RNA was extracted using TRIzol (Life Technologies). Starting from 1 µg total RNA, poly-adenylated fragments were isolated, reverse transcribed and converted into indexed sequencing libraries using the KAPA stranded mRNA-seq kit (Sopachem, Eke, Belgium) RNA libraries were created using the KAPA stranded mRNA-seq kit (Sopachem, Eke, Belgium) according to the manufacturers instructions.

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: endothelial cell-specific CPT1A knockout

text: Mus musculus

text: male

characteristic: sex

text: Sample 1


E-MTAB-6595:Sample 2

characteristic: External Id

text: Laboratory of Angiogenesis and Vascular Metabolism VIB-KU Leuven Center for Cancer Biology (CCB)

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6595:Sample 2

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: endothelial cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: male

text: Sample 2

characteristic: title


E-MTAB-6595:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6595:Sample 5

text: 10 to 12

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male

text: Sample 5


E-MTAB-6595:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-6595:Sample 3

text: 10 to 12

characteristic: age

text: ArrayExpress

text: endothelial cell

text: house mouse

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

text: wild type

characteristic: phenotype

text: Mus musculus

text: male

characteristic: strain

text: Sample 3


E-MTAB-6595:Sample 4

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-6595:Sample 4

text: 10 to 12

text: ArrayExpress

text: endothelial cell

characteristic: cell type

text: house mouse

characteristic: common name

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: wild type

text: Mus musculus

text: male

characteristic: sex

text: Sample 4


E-MTAB-6595:Sample 6

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-6595:Sample 6

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: endothelial cell

text: house mouse

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: wild type

text: Mus musculus

text: male

text: Sample 6

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: JLU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Acinetobacter sp. KPC-SM-21 genome and annotation

characteristic: description

text: Acinetobacter sp. KPC-SM-21

text: Acinetobacter sp. KPC-SM-21

text: Acinetobacter sp. KPC-SM-21


MAX Round0

characteristic: External Id

text: COLUMBIA UNIVERSITY

text: public

text: MAX Round0

tag: Namespace:COLUMBIA UNIVERSITY

text: human

text: Homo sapiens

text: Homo sapiens

text: R0 SELEX library for MAX


MAX Round1

text: COLUMBIA UNIVERSITY

text: public

characteristic: INSDC status

text: MAX Round1

text: human

text: Homo sapiens

text: Homo sapiens

text: R1 SELEX library for MAX


text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_8b31d3e8-a31b-4126-8b8a-2886137dc532

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: NIOO-KNAW

text: public

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Greece

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

text: Rhizosphere bacterial communities of range-expanding plants

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: grassland

text: natural Grassland

text: soil

text: Slovenia

text: metagenome

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illumina Miseq

text: soil

characteristic: title


text: NIOO-KNAW

text: public

characteristic: INSDC status

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

text: grassland

text: natural Grassland

text: soil

text: Montenegro

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

text: natural Grassland

text: soil

text: Germany

text: metagenome

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: gray seal

characteristic: common name

text: Baltic sea

characteristic: isolation source

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

characteristic: sub species

text: Grey seal individual #Hg-07


text: UNIVERSITY OF HELSINKI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gray seal

text: Baltic sea

text: Halichoerus grypus

characteristic: organism

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-08

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

text: Rhizosphere fungal communities of range-expanding plants

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: grassland

text: natural Grassland

text: soil

text: Slovenia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Netherlands

text: metagenome

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

text: grassland

text: natural Grassland

text: soil

characteristic: environment (material)

text: Montenegro

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: grassland

text: natural Grassland

text: soil

text: Germany

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Austria

text: metagenome

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF HELSINKI

text: public

text: gray seal

characteristic: common name

text: Baltic sea

characteristic: isolation source

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

characteristic: sub species

text: Grey seal individual #Hg-10


text: UNIVERSITY OF HELSINKI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: gray seal

text: Baltic sea

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-11


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

text: grassland

text: natural Grassland

text: soil

characteristic: environment (material)

text: Greece

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

text: Soil bacterial communities of range-expanding plants

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Slovenia

text: metagenome

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: grassland

text: natural Grassland

text: soil

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

text: grassland

text: natural Grassland

text: soil

text: Montenegro

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Germany

text: metagenome

text: uncultured eukaryote

characteristic: organism

text: uncultured eukaryote

text: Illumina Miseq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: grassland

text: natural Grassland

text: soil

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF HELSINKI

text: public

text: gray seal

characteristic: common name

text: Baltic sea

characteristic: isolation source

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

characteristic: sub species

text: Grey seal individual #Hg-13


text: UNIVERSITY OF HELSINKI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: gray seal

text: Baltic sea

text: Halichoerus grypus

text: Halichoerus grypus

text: unspecified

text: Grey seal individual #Hg-15


text: NIOO-KNAW

text: public

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Greece

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

characteristic: organism

text: Soil fungal communities of range-expanding plants

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: grassland

text: natural Grassland

text: soil

characteristic: environment (material)

text: Slovenia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


text: NIOO-KNAW

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Netherlands

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NIOO-KNAW

text: public

text: grassland

text: natural Grassland

text: soil

text: Montenegro

text: metagenome

text: uncultured eukaryote

characteristic: organism

characteristic: project name

text: uncultured eukaryote

text: Illumina Miseq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

characteristic: title


text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: grassland

text: natural Grassland

text: soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NIOO-KNAW

text: public

characteristic: collection date

text: grassland

characteristic: environment (biome)

text: natural Grassland

characteristic: environment (feature)

text: soil

text: Austria

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

text: uncultured eukaryote

text: Illumina Miseq

text: soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sputum

characteristic: isolation source

text: Actinomyces sp. Marseille-P3109

characteristic: organism

text: Actinomyces sp. Marseille-P3109

characteristic: strain

text: Actinomyces oralis genome

characteristic: title


characteristic: ENA-CHECKLIST

text: URMITE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: A new complete genome of Cedratvirus

characteristic: description

text: Acanthamoeba castellanii

characteristic: host scientific name

text: Water supplemented with biofloc

text: Brazilian cedratvirus IHUMI

text: Brazilian cedratvirus IHUMI

text: Brazilian Cedratvirus IHUMI genome


text: gut metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: gut metagenome

characteristic: common name

text: gut metagenome

text: gut metagenome

characteristic: subject id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

text: public

characteristic: collection date

text: A new complete genome of Cedratvirus

text: Acanthamoeba castellanii

text: Alpova sp homogenate

text: Cedratvirus Zaza IHUMI

text: Cedratvirus Zaza IHUMI

text: Cedratvirus Zaza IHUMI genome


E-MTAB-6607:Sample 2

characteristic: INSDC first public

text: public

text: E-MTAB-6607:Sample 2

tag: Namespace:Warwick Medical School, University of Warwick, UK

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: human

text: Protocols: Blood samples were collected from 3 healthy volunteers and peripheral blood mononuclear cells (PBMCs) isolated by density gradient centrifugation on Ficoll. PBMCs were differentiated into macrophages using macrophage colony-stimulating factor (M-CSF). Cells were stimulated for 3h as detailed and total RNA extracted. PBMCs were differentiated to macrophages in RPMI + 10% FCS with 50ng/ml M-CSF for 8 days before stimulation. PBMC-derived macrophages were stimulated with either media alone, 200ng/ml lipid A or 50ng/ml TNF alpha for 3h before RNA isolation. ~2x10^6 cells were stimulated per condition. RNA was extracted using the mirVana RNA isolation kit according to the manufacturer's instructions. Input RNA quality was assessed on a TapeStation2200 using the RNA Screen Tape to confirm high RNA quality (RIN score > 8) according to manufacturers instructions. Input RNA quantity was assessed using a Qubit 2.0 Fluorometer and the Qubit RNA BR Assay Kit according to manufacturers instructions. Library was constructed using the Illumina TruSeq stranded total RNA kit according to manufacturers instructions with an input of 500 ng total RNA / sample. This kit includes ribosomal RNA removal by Ribozero treatment. The quality of final libraries was checked on a TapeStation2200 using the D1000 Screen Tape.

text: adult

characteristic: developmental stage

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: peripheral blood mononuclear cell

characteristic: progenitor cell type

text: Homo sapiens

text: Sample 2


E-MTAB-6607:Sample 5

characteristic: ENA-CHECKLIST

text: Warwick Medical School, University of Warwick, UK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6607:Sample 5

characteristic: Submitter Id

text: ArrayExpress

text: macrophage

text: human

characteristic: description

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-6607:Sample 8

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6607:Sample 8

text: ArrayExpress

text: macrophage

text: human

characteristic: common name

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 8


E-MTAB-6607:Sample 3

characteristic: INSDC first public

text: public

text: E-MTAB-6607:Sample 3

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 3


E-MTAB-6607:Sample 6

text: public

text: E-MTAB-6607:Sample 6

text: ArrayExpress

text: macrophage

text: human

text: adult

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

characteristic: organism part

text: peripheral blood mononuclear cell

characteristic: progenitor cell type

text: Homo sapiens

text: Sample 6


E-MTAB-6607:Sample 9

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6607:Sample 9

text: ArrayExpress

text: macrophage

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 9


E-MTAB-6607:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6607:Sample 1

characteristic: Submitter Id

text: ArrayExpress

text: macrophage

text: human

characteristic: description

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-6607:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6607:Sample 4

text: ArrayExpress

text: macrophage

text: human

characteristic: common name

text: adult

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 4


E-MTAB-6607:Sample 7

characteristic: INSDC first public

text: public

text: E-MTAB-6607:Sample 7

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: blood

text: peripheral blood mononuclear cell

text: Homo sapiens

text: Sample 7


text: Vibrio cholerae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

characteristic: subject id


text: Mus musculus

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

tag: Namespace:Lehrstuhl fur Mikrobiologie und Archaeenzentrum Universitat Regensburg

characteristic: Submitter Id

text: ArrayExpress

text: Protocols: Cells were grown under anaerobic conditions in nutrient rich medium based on SME in a 15L bio-fermentor and supplemented with 40 mM pyruvate and 0.025 % yeast extract. Cultivation was done 95°C. After the cells reached a cell density of 1 to 1.5x108 cells/ml (middle to late exponential phase) fixation was done directly in the bio-fermenter at 95°C with a final concentration of 0.1% (v/v) formaldehyde. After 20s the crosslinking reaction was stopped by adding glycine to a final concentration of 15 mM and the bio-fermenter was straight away cooled down to 20°C for harvesting the crosslinked P. furiosus cells. Formaldehyde-treated cells were disrupted by sonication using the Branson Sonifier (Branson, Danbury, USA) until an average fragment length of 250 bp to 500 bp was obtained. Insoluble particles were removed by centrifugation. After freezing with liquid nitrogen the cell extracts were stored at -80°C. For determination of DNA concentration and fragment length 1 volume of cell extract was mixed with 4 volumes ChIP elution buffer (10 mM Tris pH 8.0, 1% (w/v) SDS, 0.1 mM EGTA) and incubated overnight at 65°C. After RNase treatment DNA was purified via the QIAquick PCR Purification Kit (Qiagen, Hilden, Germany) and concentration was measured using the NanoDrop (Peqlab, Erlangen, Germany). For immunoprecipitation (IP) 10 µg of purified polyclonal antibodies raised against TFB-RF11 was coupled to 50 µl Dynabeads Protein G for Immunoprecipitation (Thermo Fisher Scientific, Waltham, USA) according to the manufactures instructions. Antibody coupled magnetic beads were resuspended in 500 µl P. furiosus cell extracts adjusted to a total DNA amount of 15 µg in PBS and incubated overnight at 4°C. Immunoprecipated complexes were washed in total five times with 500 µl of the following washing buffers: 2x low salt buffer, 1x high salt buffer, 1x LiCl detergent and 1 x TE. Elution from the beads was done in 100 µl ChIP elution buffer at 65°C for 10 minutes. A second elution step was done without heating using 150 µl TE buffer supplemented with 0.67% (v/v) SDS and both eluates were combined. For the input sample 200 µl TE supplemented with 1% (v/v) SDS was added to 50 µl not immunoprecipitated P. furiosus cell extract (1,5 µg total DNA, 10% of the IP). Eluted complexes and input samples were incubated overnight at 65°C for reversal of the crosslink. After treatment with RNase A and Proteinase K ChIP enriched and input DNA was purified via the QIAquick PCR purification kit (Qiagen, Hilden, Germany) and stored at -20°C. Library preparations were done according to the NEBNext ®-ChIP-Seq library prep reagent set for Illumina protocol (New England Biolabs, Ipswich, USA). For multiplex sample preparation the NEBNext® Multiplex oligos (primer set 1 and 2) (New England Biolabs, Ipswich, USA) were used and libraries were PCR amplified by the NEBNext®High Fidelity Master Mix (New England Biolabs, Ipswich, USA).

text: SME+40 mM pyruvate+0.025% yeast extract

characteristic: growth condition

text: Pyrococcus furiosus

text: Pyrococcus furiosus

text: Pyrococcus furiosus

characteristic: strain

text: Input


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Lehrstuhl fur Mikrobiologie und Archaeenzentrum Universitat Regensburg

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: description

text: SME+40 mM pyruvate+0.025% yeast extract

text: Pyrococcus furiosus

text: Pyrococcus furiosus

characteristic: replicate

text: Pyrococcus furiosus

characteristic: title


E-MTAB-6617:Sample 1

text: The Children’s Hospital of Philadelphia

characteristic: INSDC first public

text: public

text: E-MTAB-6617:Sample 1

tag: Namespace:The Children’s Hospital of Philadelphia

text: ArrayExpress

characteristic: broker name

text: T follicular helper cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: The following cells were sorted from human children healthy donor tonsils: naive CD4+CD45RO- T cells (Naive) and CD4+CD45RO+CD25-CXCR5hiPD1hi follicular helper CD4+ T cells (TFH). For each of the TFH and Naive libraries, 50,000 live cells were harvested. The ATAC-seq libraries were generated following a previously published protocol (Buenrostro et al., Nature Methods, 2013). The nuclei were isolated from the 50,000 cells. The isolated nuclei were treated with Tn5 Transposes from Nextera DNA Sample Preparation Kit and the transposed DNA was purified using a Qiagen MinElute Kit. The transposed DNA libraries were amplified by PCR for 12 cycles and isolated by Ampure XP beads.

text: juvenile stage

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tonsil

characteristic: organism part

characteristic: phenotype

text: Homo sapiens

text: Sample 1


E-MTAB-6617:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Children’s Hospital of Philadelphia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6617:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: T follicular helper cell

text: human

text: juvenile stage

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 2


E-MTAB-6617:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Children’s Hospital of Philadelphia

characteristic: INSDC center name

text: public

text: E-MTAB-6617:Sample 3

text: ArrayExpress

text: T follicular helper cell

text: human

characteristic: description

text: juvenile stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-6617:Sample 4

text: The Children’s Hospital of Philadelphia

characteristic: INSDC first public

text: public

text: E-MTAB-6617:Sample 4

text: ArrayExpress

characteristic: broker name

text: CD4-positive helper T cell

characteristic: cell type

text: human

characteristic: common name

text: juvenile stage

characteristic: developmental stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 4


E-MTAB-6617:Sample 5

characteristic: ENA-CHECKLIST

text: The Children’s Hospital of Philadelphia

text: public

text: E-MTAB-6617:Sample 5

text: ArrayExpress

text: CD4-positive helper T cell

text: human

text: juvenile stage

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tonsil

characteristic: organism part

characteristic: phenotype

text: Homo sapiens

text: Sample 5


E-MTAB-6617:Sample 6

characteristic: ENA-FIRST-PUBLIC

text: The Children’s Hospital of Philadelphia

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6617:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive helper T cell

text: human

text: juvenile stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 6


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

text: public

tag: Namespace:University of Surrey

characteristic: collection date

text: horse

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model I1V1T0


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: horse

characteristic: common name

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1V1T-1

characteristic: title


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

text: public

characteristic: collection date

text: horse

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1V1T5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model I1V2T0


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1V2T5


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model I1V3T0


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1V3T-1

characteristic: title


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1V3T5


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model I1C


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1LVC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I1RVC


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model I2C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I2LVC

characteristic: title


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model I2RVC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model I2V1T0


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

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