text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

characteristic: host

text: IPD

characteristic: isolate

text: clinical specimen

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: subject id

characteristic: title


status: PUBLIC

text: Streptococcus pneumoniae

tag: attribute

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: China

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: IPD

characteristic: host status

text: clinical specimen

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain

type: AMR curated data - CABBAGE

value: penicillin

value: CLSI

value: e-test

value: mg/L

value: resistant

value: Streptococcus pneumoniae

value: erythromycin

value: disk diffusion

value: intermediate


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

characteristic: host

text: IPD

characteristic: isolate

text: clinical specimen

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: subject id

characteristic: title

value: susceptible


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: China

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: IPD

characteristic: host status

text: clinical specimen

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

text: IPD

text: clinical specimen

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

characteristic: host

text: IPD

characteristic: isolate

text: clinical specimen

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: subject id

characteristic: title


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: China

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: IPD

characteristic: host status

text: clinical specimen

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

text: IPD

text: clinical specimen

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

characteristic: host

text: IPD

characteristic: isolate

text: clinical specimen

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: subject id

characteristic: title


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: China

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: IPD

characteristic: host status

text: clinical specimen

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

text: IPD

text: clinical specimen

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

characteristic: host

text: IPD

characteristic: isolate

text: clinical specimen

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

text: Human

characteristic: subject id

characteristic: title


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHN

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: China

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: IPD

characteristic: host status

text: clinical specimen

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Human


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: CHN

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Streptococcus pneumoniae

text: China

text: Streptococcus

text: Homo sapiens

text: IPD

text: clinical specimen

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: strain

characteristic: sub strain


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: csf

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id

characteristic: title

value: clindamycin

value: levofloxacin

value: broth dilution

value: tetracycline

value: trimethoprim-sulfamethoxazole

value: chloramphenicol

value: vancomycin

value: rifampin


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: BRA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: penicillin

value: CLSI


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: mg/L


text: Streptococcus pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: resistant


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: erythromycin


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id

value: disk diffusion


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: intermediate


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: susceptible


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: clindamycin


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: levofloxacin


text: Streptococcus pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: broth dilution


text: Streptococcus pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: tetracycline


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: trimethoprim-sulfamethoxazole


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id

value: chloramphenicol


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title

value: vancomycin


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: rifampin


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: penicillin


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: CLSI


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: subject id


text: Streptococcus pneumoniae

characteristic: External Id

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

characteristic: common name

text: Streptococcus

characteristic: genus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: mg/L


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: Streptococcus pneumoniae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: csf

text: central nervous system

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: resistant


text: Streptococcus pneumoniae

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: BRA

text: Streptococcus pneumoniae

text: Streptococcus

text: Homo sapiens

text: blood

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

value: Streptococcus pneumoniae


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: IRD MIVEGEC

text: public

tag: Namespace:IRD MIVEGEC

text: Leishmania infantum

text: Leishmania infantum

text: nicotinamidase (pnc1) deficient mutant of L. infantum


KO-SbR

text: IRD MIVEGEC

text: public

text: KO-SbR

text: Leishmania infantum

text: Leishmania infantum

text: nicotinamidase (pnc1) deficient mutant of L. infantum resistant to SbIII


Lm-ctrl

text: IRD MIVEGEC

text: public

text: Lm-ctrl

text: Leishmania major

text: Leishmania major

text: CRISPR/Cas9 control parasites


text: IRD MIVEGEC

text: public

text: Leishmania major

text: Leishmania major

text: CRISPR/Cas9 edited parasites


text: IRD MIVEGEC

text: public

text: Leishmania major

text: Leishmania major

text: CRISPR/Cas9 edited parasites and resistant to SbIII


text: human lung metagenome

text: SC

text: public

text: human lung metagenome

text: human lung metagenome

text: human lung metagenome


text: public

tag: Namespace:RIVM - National Institute for Public Health and the Environment

text: not available

characteristic: collection date

text: Netherlands

characteristic: country

text: Escherichia coli

text: Escherichia coli

text: provisional Shigella, E. coli O-:H45

characteristic: serovar


characteristic: External Id

text: UNIV-WUE

text: public

characteristic: description

text: peat swamp forest

characteristic: environment (biome)

text: peat swamp

characteristic: environment (feature)

text: peat

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: organism

text: Peat Swamp Microbiota

characteristic: project name

text: metagenome

text: MiSeq Amplicons

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Peat Sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIV-WUE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Tma

text: peat swamp forest

text: peat swamp

text: peat

text: Malaysia

text: mimarks-survey

text: metagenome

text: Peat Swamp Microbiota

text: metagenome

text: MiSeq Amplicons

text: soil

text: Peat Sample

characteristic: title


characteristic: External Id

text: UNIV-WUE

text: public

text: Water

characteristic: description

text: peat swamp forest

characteristic: environment (biome)

text: peat swamp

characteristic: environment (feature)

text: peat

characteristic: environment (material)

text: Malaysia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: metagenome

text: Peat Swamp Microbiota

text: metagenome

text: MiSeq Amplicons

text: soil

text: Control Sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIV-WUE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Zymo control

text: peat swamp forest

text: peat swamp

text: peat

text: Malaysia

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: organism

text: Peat Swamp Microbiota

characteristic: project name

text: metagenome

text: MiSeq Amplicons

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Control Sample


characteristic: External Id

text: INRA (INRA Toulouse)

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRA (INRA Toulouse)

characteristic: Submitter Id

characteristic: collection date

text: house mouse

characteristic: common name

text: gut

characteristic: environment (biome)

text: colon

characteristic: environment (feature)

text: feces

text: France

text: host-associated

characteristic: host-associated environmental package

text: metagenome

text: Mus musculus

text: Impaired AhR ligands production by the gut microbiota is a key factor in metabolic syndrome

text: Mus musculus

text: NGS

characteristic: title


text: iPSC

text: male

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: Male

characteristic: gender

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: iPSC

text: female

text: Homo sapiens

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Female

text: Homo sapiens

characteristic: organism

text: Homo sapiens


P. arcanus genome

text: public

text: P. arcanus genome

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: Submitter Id

text: Genomic DNA of Pristionchus arcanus (RS5527)

characteristic: description

text: Pristionchus arcanus

text: Pristionchus arcanus

text: P. arcanus genomic DNA


HCT116 ctrl

text: public

text: HCT116 ctrl

tag: Namespace:EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN

text: human

characteristic: common name

text: HCT116 cells

text: Homo sapiens

text: Homo sapiens

text: HCT116 ctrl

characteristic: title


HCT116 Mps1i

text: EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN

text: public

text: HCT116 Mps1i

text: human

text: HCT116 cells treated with Mps1 inhibitors

text: Homo sapiens

text: Homo sapiens

text: HCT116 Mps1i


32-8 ctrl

text: public

text: 32-8 ctrl

text: human

text: HCT116 cells p38-alpha deficient

text: Homo sapiens

text: Homo sapiens

text: 32-8 ctrl


32-8 Mps1i 2N

text: public

text: 32-8 Mps1i 2N

text: human

text: HCT116 cells p38-alpha deficient treated with Mps1 inhibitors (2N DNA)

text: Homo sapiens

text: Homo sapiens

text: 32-8 Mps1i 2N


32-8 Mps1i 4N

text: public

text: 32-8 Mps1i 4N

text: human

text: HCT116 cells p38-alpha deficient treated with Mps1 inhibitors (4N DNA)

text: Homo sapiens

text: Homo sapiens

text: 32-8 Mps1i 4N


P. maxplancki genomic DNA

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: P. maxplancki genomic DNA

text: Genomic DNA of Pristionchus maxplancki nematodes

text: Pristionchus maxplancki

text: Pristionchus maxplancki

text: P. maxplancki genomic DNA


P. japonicus genomic DNA

text: public

text: P. japonicus genomic DNA

text: Pristionchus japonicus genomic DNA

text: Pristionchus japonicus

text: Pristionchus japonicus

text: P. japonicus genomic DNA


text: URMITE

text: public

text: The Streptococcus intermedius strain isolated from a patient was used to detect and describe the genomic differences between Streptococcus intermedius strains causing distinct human infections.

text: Abdominal abscess

characteristic: isolation source

text: Streptococcus intermedius B196

text: Streptococcus intermedius B196

characteristic: strain

text: Streptococcus intermedius genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: URMITE

text: public

text: Broncho-pulmonary abscess

text: Streptococcus intermedius B196

text: Streptococcus intermedius B196

text: Streptococcus intermedius genome


characteristic: ENA-LAST-UPDATE

text: URMITE

characteristic: INSDC center name

text: public

text: Bone abscess

text: Streptococcus intermedius B196

text: Streptococcus intermedius B196

text: Streptococcus intermedius genome


text: URMITE

characteristic: INSDC first public

text: public

text: Brain Abscess

text: Streptococcus intermedius B196

text: Streptococcus intermedius B196

text: Streptococcus intermedius genome


P. entomophagus genomic DNA

text: public

text: P. entomophagus genomic DNA

text: Pristionchus entomophagus genomic DNA

text: Pristionchus entomophagus

text: Pristionchus entomophagus

text: P. entomophagus genomic DNA


P. mayeri genomic DNA

text: public

text: P. mayeri genomic DNA

text: Pristionchus mayeri genomic DNA

text: Pristionchus mayeri

text: Pristionchus mayeri

text: P. mayeri genomic DNA


P. fissidentatus genomic DNA

text: public

text: P. fissidentatus genomic DNA

text: Pristionchus fissidentatus genomic DNA

text: Pristionchus fissidentatus

text: Pristionchus fissidentatus

text: P. fissidentatus genomic DNA


text: The Netherlands Cancer Institute

text: public

tag: Namespace:The Netherlands Cancer Institute

text: 10 to 12

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tumor and stromal cell

characteristic: cell type

text: house mouse

text: Protocols: Using flow cytometry, CD43+ CD8+ T cells (‘CTLs’), CD45+ hematopoietic cells, and CD45- (tumor/stromal) cells were isolated from both the irradiated and non-irradiated tumors of 9 mice per experimental group, and material from 3 mice was pooled per sample to retrieve sufficient RNA. Mice were injected with 0.5 x 106 AT-3 cells into this fat pad on one side and with 2.5 x 10^6 AT-3 cells on the contralateral flank. The latter tumor was irradiated, and the other tumor served as the non-irradiated ‘abscopal’ tumor. Tumor size was measured using a caliper, and treatment was initiated when the tumors reached 20-25mm2. Therapy was done with n=9 mice per group. Radiotherapy (RT) was applied using an XRAD225-Cx system (Precision X-Ray, North Branford, CT). The tumor(s) were localized on the CT scan and targeted with RT at 0.1 mm precision using round collimators 1.0 or 1.5 cm in diameter. A single fraction of 10 Gy (225 peak kilovoltage (kVp), filtered with 0.3 mm of copper (3 Gy/min) was delivered. Immunomodulatory α-PD-1 and α-CD137 mAbs were diluted in PBS. The antibodies were administered twice weekly for 2 weeks either intraperitoneally (α-PD-1 mAb, 100 μg per injection), or intratumorally (α-CD137 mAb, 25 μg per injection), with the first dose delivered immediately after RT treatment. The flow cytometric-isolated cells were immediately collected in RLT lysis buffer (QIAGEN) and total RNA was extracted using the RNAeasy mini kit (QIAGEN) in accordance with the manufacturer’s instructions. The integrity of the total RNA was assessed using a 2100 Bioanalyzer System (Agilent). Only RNA samples with an RNA Integrity Number (RIN) > 8 were used to create the library. Poly-A-selected RNA libraries were prepared using the Illumina TruSeq polyA stranded RNA kit.

text: wild type genotype

characteristic: genotype

text: mouse pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: hypodermis

characteristic: organism part

text: CD45 negative

characteristic: phenotype

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: injected with AT-3 tumor cells

characteristic: treatment


characteristic: External Id

text: The Netherlands Cancer Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: tumor and stromal cell

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hypodermis

text: CD45 negative

text: neoplasm

text: Mus musculus

text: female

characteristic: title

text: injected with AT-3 tumor cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tumor and stromal cell

characteristic: cell type

text: house mouse

text: wild type genotype

text: mouse pool 3

text: Mus musculus

text: Mus musculus

text: hypodermis

text: CD45 negative

text: neoplasm

text: Mus musculus

text: female

characteristic: strain

text: injected with AT-3 tumor cells


characteristic: External Id

text: The Netherlands Cancer Institute

characteristic: INSDC last update

text: public

text: 10 to 12

text: ArrayExpress

text: hematopoietic cell

text: house mouse

text: wild type genotype

characteristic: genotype

text: mouse pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: hypodermis

characteristic: organism part

text: CD45 positive

characteristic: phenotype

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: injected with AT-3 tumor cells

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: hematopoietic cell

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hypodermis

text: CD45 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: title

text: injected with AT-3 tumor cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hematopoietic cell

characteristic: cell type

text: house mouse

text: wild type genotype

text: mouse pool 3

text: Mus musculus

text: Mus musculus

text: hypodermis

text: CD45 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: strain

text: injected with AT-3 tumor cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

text: public

text: 10 to 12

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

text: wild type genotype

characteristic: genotype

text: mouse pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: hypodermis

characteristic: organism part

text: CD43 positive

characteristic: phenotype

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: injected with AT-3 tumor cells

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hypodermis

text: CD43 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: title

text: injected with AT-3 tumor cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

text: wild type genotype

text: mouse pool 3

text: Mus musculus

text: Mus musculus

text: hypodermis

text: CD43 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: strain

text: injected with AT-3 tumor cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

text: public

text: 10 to 12

text: ArrayExpress

text: tumor and stromal cell

text: house mouse

text: wild type genotype

characteristic: genotype

text: mouse pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: mammary fat pad

characteristic: organism part

text: CD45 negative

characteristic: phenotype

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: injected with AT-3 tumor cells

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: tumor and stromal cell

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mammary fat pad

text: CD45 negative

text: neoplasm

text: Mus musculus

text: female

characteristic: title

text: injected with AT-3 tumor cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: tumor and stromal cell

characteristic: cell type

text: house mouse

text: wild type genotype

text: mouse pool 3

text: Mus musculus

text: Mus musculus

text: mammary fat pad

text: CD45 negative

text: neoplasm

text: Mus musculus

text: female

characteristic: strain

text: injected with AT-3 tumor cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

text: public

text: 10 to 12

text: ArrayExpress

text: hematopoietic cell

text: house mouse

text: wild type genotype

characteristic: genotype

text: mouse pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: mammary fat pad

characteristic: organism part

text: CD45 positive

characteristic: phenotype

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: injected with AT-3 tumor cells

characteristic: treatment


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: hematopoietic cell

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mammary fat pad

text: CD45 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: title

text: injected with AT-3 tumor cells


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: hematopoietic cell

characteristic: cell type

text: house mouse

text: wild type genotype

text: mouse pool 3

text: Mus musculus

text: Mus musculus

text: mammary fat pad

text: CD45 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: strain

text: injected with AT-3 tumor cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

text: public

text: 10 to 12

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

text: wild type genotype

characteristic: genotype

text: mouse pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: mammary fat pad

characteristic: organism part

text: CD43 positive

characteristic: phenotype

text: neoplasm

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: injected with AT-3 tumor cells

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Netherlands Cancer Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 12

text: ArrayExpress

text: CD8-positive, alpha-beta T cell

text: house mouse

characteristic: common name

characteristic: description

text: wild type genotype

text: mouse pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mammary fat pad

text: CD43 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: title

text: injected with AT-3 tumor cells


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Netherlands Cancer Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: CD8-positive, alpha-beta T cell

characteristic: cell type

text: house mouse

text: wild type genotype

text: mouse pool 3

text: Mus musculus

text: Mus musculus

text: mammary fat pad

text: CD43 positive

text: neoplasm

text: Mus musculus

text: female

characteristic: strain

text: injected with AT-3 tumor cells


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum

characteristic: subject id


Parapristionchus genomic DNA

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Parapristionchus genomic DNA

characteristic: Submitter Id

text: Parapristionchus giblindavisi genomic DNA

text: Parapristionchus giblindavisi

text: Parapristionchus giblindavisi

text: Parapristionchus genomic DNA


Micoletzkya japonica genomic DNA

text: public

text: Micoletzkya japonica genomic DNA

text: Micoletzkya japonica genomic DNA

characteristic: description

text: Micoletzkya japonica

characteristic: organism

text: Micoletzkya japonica

text: Micoletzkya japonica genomic DNA

characteristic: title


E-MTAB-6904:RNA-IP MKT1L Elu 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZMBH - University of Heidelberg

characteristic: INSDC center name

text: public

text: E-MTAB-6904:RNA-IP MKT1L Elu 3

tag: Namespace:ZMBH - University of Heidelberg

text: ArrayExpress

text: Protocols: RNA IP (Flow_Through or Elute) Cells at less than 2 million per ml in culture Trifast follow rRNA depletion by RNAse-H treatment Illumina HiSeq

text: TEV Eluate

characteristic: fraction

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP MKT1L Elu 3


E-MTAB-6904:RNA-IP MKT1L Elu 4

text: ZMBH - University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6904:RNA-IP MKT1L Elu 4

text: ArrayExpress

characteristic: broker name

text: TEV Eluate

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP MKT1L Elu 4


E-MTAB-6904:RNA-IP MKT1L FT 3

text: ZMBH - University of Heidelberg

text: public

text: E-MTAB-6904:RNA-IP MKT1L FT 3

text: ArrayExpress

text: flow through

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP MKT1L FT 3


E-MTAB-6904:RNA-IP MKT1L FT 4

text: ZMBH - University of Heidelberg

text: public

text: E-MTAB-6904:RNA-IP MKT1L FT 4

text: ArrayExpress

text: flow through

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP MKT1L FT 4


E-MTAB-6906:RNA-IP ZC3H22 Elu 5

text: ZMBH - University of Heidelberg

text: public

text: E-MTAB-6906:RNA-IP ZC3H22 Elu 5

text: ArrayExpress

text: Protocols: RNA IP (Flow_Through or Elute) Trifast follow rRNA depletion by RNAse-H treatment Illumina HiSeq

text: TEV Eluate

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP ZC3H22 Elu 5


E-MTAB-6906:RNA-IP ZC3H22 Elu 7

text: ZMBH - University of Heidelberg

text: public

text: E-MTAB-6906:RNA-IP ZC3H22 Elu 7

text: ArrayExpress

text: TEV Eluate

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP ZC3H22 Elu 7


E-MTAB-6906:RNA-IP ZC3H22 FT 5

text: ZMBH - University of Heidelberg

text: public

text: E-MTAB-6906:RNA-IP ZC3H22 FT 5

text: ArrayExpress

text: flow through

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP ZC3H22 FT 5


E-MTAB-6906:RNA-IP ZC3H22 FT 7

text: ZMBH - University of Heidelberg

text: public

text: E-MTAB-6906:RNA-IP ZC3H22 FT 7

text: ArrayExpress

text: flow through

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: RNA-IP ZC3H22 FT 7


E-MTAB-6907:TAP RNA-IP - MKT1 - Elu 2

text: ZMBH

text: public

text: E-MTAB-6907:TAP RNA-IP - MKT1 - Elu 2

text: ArrayExpress

text: Protocols: RNA IP (Flow_Through or Elute) Trifast then rRNA depletion by RNAse-H treatment Illumina standard kit no poly(A) selection

text: Eluate

text: density under 2million / ml

characteristic: growth condition

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: TAP RNA-IP - MKT1 - Elu 2


E-MTAB-6907:TAP RNA-IP - MKT1 - Elu 4

characteristic: ENA-CHECKLIST

text: ZMBH

text: public

text: E-MTAB-6907:TAP RNA-IP - MKT1 - Elu 4

text: ArrayExpress

text: Eluate

text: density under 2million / ml

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: TAP RNA-IP - MKT1 - Elu 4


E-MTAB-6907:TAP RNA-IP - MKT1 - FT2

characteristic: ENA-FIRST-PUBLIC

text: ZMBH

text: public

text: E-MTAB-6907:TAP RNA-IP - MKT1 - FT2

text: ArrayExpress

text: flow through

text: density under 2million / ml

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: TAP RNA-IP - MKT1 - FT2


E-MTAB-6907:TAP RNA-IP - MKT1 - FT4

text: ZMBH

text: public

text: E-MTAB-6907:TAP RNA-IP - MKT1 - FT4

text: ArrayExpress

text: flow through

text: density under 2million / ml

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: TAP RNA-IP - MKT1 - FT4


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: African malaria mosquito

characteristic: common name

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


text: APC Microbiome Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:APC Microbiome Institute

characteristic: Submitter Id

characteristic: collection date

text: Bacteriophage

text: Assembled viral sequences from elderly human faecal samples

text: faeces

characteristic: environment (biome)

text: faeces

characteristic: environment (feature)

text: faeces

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: unidentified phage

text: ELDERMET virome

characteristic: project name

text: unidentified phage

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF KONSTANZ

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF KONSTANZ

text: Midas cichlid

text: Amphilophus citrinellus

characteristic: organism

text: Amphilophus citrinellus

text: RADseq SE data

characteristic: title


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_FOHM_d8fadd84-b1fd-40eb-a248-f7370408a170

tag: Namespace:Public Health Agency of Sweden

characteristic: Submitter Id

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_d3016be0-b996-4b24-9de8-9fcb6d3e5416

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: public

text: sam_FOHM_b93c3bf1-99d3-45c8-bb79-e4fce5025900

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_FOHM_d1636335-3868-4a81-9748-78ba37e9d063

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

text: sam_FOHM_e248731c-e4d1-45de-ae30-95f3c17d5faf

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


text: Public Health Agency of Sweden

text: public

characteristic: SRA accession

text: sam_FOHM_1b4a0020-0c18-4538-bbb1-46840315a0e6

characteristic: Submitter Id

text: FOHM

characteristic: collected by

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_f5a37f8d-a8cf-4011-85c0-1177af426ac7

text: FOHM

characteristic: collection date

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_30a75f8d-cf30-4b16-a0d4-1c37a44789f4

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_c64ea2a5-ed9f-4350-b93b-bf97c9052953

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_FOHM_96571b5c-b304-4027-8fdd-4b3740dc4fe3

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

text: sam_FOHM_01917ac1-ecea-4ea0-9349-cb2d097aeb38

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: SRA accession

text: sam_FOHM_7f73639a-351b-4987-90e4-4ccab498b3bd

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


E-MTAB-6917:Zeb1 0hr ChIP

text: public

text: E-MTAB-6917:Zeb1 0hr ChIP

tag: Namespace:Institute of Life Sciences, Nalco Square Chandrashekharpur, Bhubaneswar Odisha-751023

text: ArrayExpress

characteristic: broker name

text: conventional dendritic cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: The CD8α+ DC lines were grown in IMDM medium supplemented with 10% FBS and antibiotic solution (Gibco), 5x10-5M 2-mercaptoethanol,sodiumbicarbonate, hepes. The cells were maintained at 37°C in a humidified incubator with 5% CO2. DNA-Chromatin was fixed and cross-linked using 16% formaldehyde and quenched using 2.5M glycine. Thereafter, the fixed and cross-linked samples were fragmented by sonication in a Bioruptor. the fragments between 200 to 500 bp was further processed and immuno-precipitated with Zeb1 Antibody and checked with qPCR. Rest of the samples were preserved for preparing library and sequencing. For ChIP-seq library preparation, 30 µl ChIP-DNA was processed for library preparation according to ChIP-seq library preparation recommended protocol (NEB)

characteristic: description

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zeb1 0hr ChIP


E-MTAB-6916:Six hr Control Rep1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Six hr Control Rep1

tag: Namespace:Institute of Life Sciences

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Protocols: DC Cell lines (CD8+cDC1 control and Zeb1 KD) were grown in IMDM-glutamax (GIBCO) adjusted with NaHCO3 to 310 mOsm if required and supplemented with 8-10% heat inactivated FCS (tested for endotoxin toxicity toward DC cultures), 10 mM Hepes (GIBCO 15630), 50 μM β-mercaptoethanol (GIBCO 31350), and 50 U/mL of penicillin and 50 μg/mL streptomycin (GIBCO 15070). The cells were maintained at 37°C in a humidified incubator with 5% CO2. These DCs were dissociated with short incubation in non-enzymatic, 5 mM EDTA-based cell dissociation buffer (5 mM EDTA in 20 mM Hepes-PBS).DCs were plated in 6-well plates at a density of 5x105 cells/ml overnight. The cells were then challenged with different activation media containing TLR9 agonist CpG-B at various time point 0h,6h and 12h. After stimulation, cells were preserved in RNA-later(LBP lysis buffer, Macherey-Nagel) and -80oC until further RNA isolation and processing of samples. The cells preserved in LBP lysis buffer were first taken out from -80°C and thawed by placing the plates/tubes on ice. Total RNA was isolated using NucleoSpin RNA Plus kit (Macherey-Nagel) according to manufacturer’s protocol. RNA concentration was estimated by nanodrop (Thermo) and then 2ug of total RNA was used to prepare library 2 ug of total RNA was used to isolate mRNA through magnetic beads using mRNA isolation kit (PolyA mRNA isolation Module, NEB) followed by RNA-seq library preparation using NEB Ultra RNA seq Library kit and their multiplex indexes strictly following the vendor recommended protocol. After library preparation concentration of libraries were estimated using qubit 2.0 (Invitrogen) and the recommended fragmentation sizes were confirmed by Bio-analyzer (Agilent).

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Six hr Control Rep1


E-MTAB-6916:Six hr Control Rep2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Six hr Control Rep2

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Six hr Control Rep2


E-MTAB-6916:Six hr KD Rep1

text: Institute of Life Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-6916:Six hr KD Rep1

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Six hr KD Rep1


E-MTAB-6916:Six hr KD Rep2

text: Institute of Life Sciences

characteristic: INSDC first public

text: public

text: E-MTAB-6916:Six hr KD Rep2

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Six hr KD Rep2


E-MTAB-6916:Twelve hr Control Rep1

text: Institute of Life Sciences

characteristic: INSDC last update

text: public

text: E-MTAB-6916:Twelve hr Control Rep1

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Twelve hr Control Rep1


E-MTAB-6916:Twelve hr Control Rep2

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Twelve hr Control Rep2

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Twelve hr Control Rep2


E-MTAB-6916:Twelve hr KD Rep1

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Twelve hr KD Rep1

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Twelve hr KD Rep1


E-MTAB-6916:Twelve hr KD Rep2

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Twelve hr KD Rep2

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Twelve hr KD Rep2


E-MTAB-6916:Zero hr Control Rep1

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Zero hr Control Rep1

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zero hr Control Rep1


E-MTAB-6916:Zero hr Control Rep2

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Zero hr Control Rep2

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zero hr Control Rep2


E-MTAB-6916:Zero hr KD Rep1

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Zero hr KD Rep1

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zero hr KD Rep1


E-MTAB-6916:Zero hr KD Rep2

text: Institute of Life Sciences

text: public

text: E-MTAB-6916:Zero hr KD Rep2

text: ArrayExpress

text: conventional dendritic cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: Mus musculus

text: Zero hr KD Rep2


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_0aed0936-e990-4a8a-ac26-a4f1f248f97a

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_FOHM_ac5915f4-692c-4c30-ac18-f4fa0f542105

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_9ec834ac-173d-419c-a0d1-ad370022f02f

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_FOHM_b3f51ddd-9a95-4063-b16e-85c2b7eea371

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

text: Public Health Agency of Sweden

characteristic: INSDC last update

text: public

text: sam_FOHM_780d4c22-3f15-428f-b9c1-322b4981fb90

text: FOHM

characteristic: collected by

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_fba89b27-d8f4-4b88-b043-7e688c11c139

text: FOHM

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

text: sam_FOHM_3e1703f2-0fce-4df9-9000-ad320899ff22

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: SRA accession

text: sam_FOHM_96c69644-352e-475d-9a10-2448476580f0

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_11ce5e98-8730-46df-afa0-88138456eca4

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: public

text: sam_FOHM_83bae4b7-2490-4355-9ff4-3eeb3bbc5228

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

text: Public Health Agency of Sweden

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_FOHM_0dac7507-4a1d-4ae8-bf15-3412795e235c

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

text: sam_FOHM_3fae4ebc-9157-43da-bc44-b10b954ecaf5

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

text: sam_FOHM_d64bb944-b9d1-4d55-b283-c3ed08066f4a

text: FOHM

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: SRA accession

text: sam_FOHM_aee581f3-ff5e-4e6d-8fba-5e8660dc5abb

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_e0ed9079-14b1-4862-98d4-ea354335643f

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_c3369132-6430-45e9-a7e4-bc567bfd7f66

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA checklist

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_FOHM_f0fe81b0-305c-43e2-b83e-9222f04d143a

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

characteristic: INSDC last update

text: public

text: sam_FOHM_b89b5155-11b5-4636-93c3-fb0a81dab69b

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

text: sam_FOHM_f22b09af-208b-4844-9fd9-ee77e5b69ed7

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: SRA accession

text: sam_FOHM_8a9c21d7-61dc-479b-b5db-c079969c7285

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_f192115d-eb90-4dbe-93d9-3750e67e57da

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_b57f8930-2e66-4a04-b46a-c264471d302a

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA checklist

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: public

text: sam_FOHM_a69e29b3-6d13-43c8-8e52-a55d38f3f3f1

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


text: Public Health Agency of Sweden

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_FOHM_c81200c7-e048-4d4b-b028-7ca9495af704

text: FOHM

characteristic: collected by

text: Sweden

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: INSDC status

text: sam_FOHM_d70b4618-b474-48cb-8188-d74b9d444f6a

text: FOHM

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Public Health Agency of Sweden

text: public

characteristic: SRA accession

text: sam_FOHM_5da4d4ba-7345-4ed6-aa1f-f6a3c2cb789a

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_f6bacafd-1fbb-4c94-9665-d61066386649

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_10c32002-924d-4956-93a6-3abada4e09e0

text: FOHM

text: Sweden

text: yes

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: kyobo

characteristic: INSDC center name

text: public

text: China

text: healthy

characteristic: host health state

text: human

text: rectal swab

characteristic: isolation source

text: Aeromonas veronii

characteristic: organism

text: Aeromonas veronii

text: mcr-3-positive Aeromonas spp.


text: kyobo

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: China

text: meat

text: chicken meat

text: Aeromonas media

text: Aeromonas media

text: mcr-3-positive Aeromonas spp.

characteristic: title


text: kyobo

text: public

characteristic: INSDC status

characteristic: collection date

text: China

characteristic: geographic location (country and/or sea)

text: meat

text: pork

text: Aeromonas veronii

text: Aeromonas veronii

text: mcr-3-positive Aeromonas spp.


text: kyobo

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: meat

text: chicken meat

text: Aeromonas salmonicida

text: Aeromonas salmonicida

text: mcr-3-positive Aeromonas spp.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: kyobo

text: public

text: China

text: meat

text: chicken meat

text: Aeromonas allosaccharophila

text: Aeromonas allosaccharophila

text: mcr-3-positive Aeromonas spp.


characteristic: ENA checklist

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_a5619d84-73c8-4485-ab25-9215a9e99ed0

text: FOHM

characteristic: collected by

text: Sweden

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: sam_e41e40b1-ec00-4ec4-b35e-9d542ebee06a

tag: Namespace:University Hospital Galway

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Brandenburg


text: University Hospital Galway

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_7c0fa56e-03ec-4b65-840c-a2124bef3450

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Litchfield

characteristic: organism


text: University Hospital Galway

text: public

characteristic: INSDC status

text: sam_20450b84-a490-4c2e-abbb-fa252e3330db

text: University Hospital Galway

characteristic: collection date

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Infantis

characteristic: title


text: University Hospital Galway

text: public

characteristic: SRA accession

text: sam_56ff1a9a-5e95-48a7-8e01-93015b69881d

characteristic: Submitter Id

text: University Hospital Galway

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Enteritidis


characteristic: ENA checklist

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Galway

text: public

text: sam_be7651b6-5149-4245-841d-227c1f263f6b

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Typhimurium


characteristic: ENA-LAST-UPDATE

text: University Hospital Galway

text: public

text: sam_2e1fd039-ec06-4964-b74e-443d7665d7a0

text: University Hospital Galway

characteristic: collected by

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Typhi


characteristic: External Id

text: University Hospital Galway

text: public

text: sam_b95e39e3-bac1-4894-ac20-988d33ecb5e1

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: host scientific name


text: University Hospital Galway

characteristic: INSDC center name

text: public

text: sam_7a438df8-03d0-4ec2-874e-a69414375bc6

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: isolate


text: IRYCIS

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spain

text: healthy

characteristic: host health state

text: wild bird

text: wild birds

characteristic: isolation source

text: Enterococcus faecalis

text: Enterococcus faecalis


text: University Hospital Galway

text: public

characteristic: INSDC status

text: sam_b3e6e776-e57f-4628-af10-708f2976de9f

text: University Hospital Galway

characteristic: collection date

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Newport

characteristic: organism

characteristic: title


characteristic: ENA checklist

text: University Hospital Galway

text: public

characteristic: SRA accession

text: sam_395f6081-0ef6-48e3-8669-9f62c56596f2

characteristic: Submitter Id

text: University Hospital Galway

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Kent

text: public

tag: Namespace:University of Kent

text: ArrayExpress

characteristic: broker name

text: Protocols: Cell harvesting Initial Growth: Cells were cultured in YPD at 30 °C for 16.5 hours to an OD600 = ~0.8 before collection by (2 min. at 1000 x g at 4 ◦C) and wash by distilled water. Treatment: cells were resuspended in 15 ml pre-warmed final media (YPD or RPMI) and grown at an appropriate temperature (30 ◦C or 37 ◦C respectively) for 90 minutes. OD600 values were recorded (OD600 = ~1.5) followed by RNA extraction. RNA extraction with modifications: Omega EZNA Yeast RNA Kit (VWR) following the kit protocol with two modifications: (1) 30 °C incubation in SE Buffer/2-mercaptoethanol/lyticase solution time was increased to 90 minutes (2) lysis was performed with bead mill at top speed for 30 minutes at 4 °C. DNase I digestion was included prior to final wash steps. RNA was eluted with 50 µL DEPC water (RNase inactivated) into low binding tubes. In addition to absorbance readings (260/280 ~2), quality was analysed by formaldehyde gel electrophoresis. Illumina

characteristic: description

text: MTL a/a arg4/arg4 his1/his1 leu2/leu2 URA3/ura3::imm434IRO1/iro1::imm434 hda1::C.d.HIS1/hda1::C.m.LEU2

characteristic: genotype

text: RPMI; 37 degree celsius

characteristic: growth condition

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: hda1/ homozygous mating type a/a derivative of SN152 (Hnisz, 2009)

characteristic: strain


characteristic: External Id

text: University of Kent

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: YPD; 30 degree celsius

text: Candida albicans

text: Candida albicans

text: Candida albicans


text: University of Kent

text: public

characteristic: INSDC status

text: ArrayExpress

text: MTL a/alpha ura3-iro1::imm434/URA3-IRO1 his1/his1 arg4/arg4 leu2/leu2 hda2/hda2

text: RPMI; 37 degree celsius

text: Candida albicans

characteristic: organism

text: Candida albicans

text: Candida albicans

text: hda2/ (SN152 parental strain)

characteristic: title


text: University of Kent

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: YPD; 30 degree celsius

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: hda2/ (SN152 parental strain)


characteristic: ENA-CHECKLIST

text: University of Kent

text: public

text: ArrayExpress

text: MTL a/alpha ura3-iro1::imm434/URA3-IRO1 his1/his1 arg4/arg4 leu2/leu2 hda3/hda3

text: RPMI; 37 degree celsius

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: hda3/ (SN152 parental strain)


characteristic: ENA-FIRST-PUBLIC

text: University of Kent

text: public

text: ArrayExpress

text: YPD; 30 degree celsius

text: Candida albicans

text: Candida albicans

text: Candida albicans

text: hda3/ (SN152 parental strain)


characteristic: ENA-LAST-UPDATE

text: University of Kent

text: public

text: ArrayExpress

text: MTL a/alpha ura3-iro1::imm434/URA3-IRO1 his1/his1 arg4/arg4 leu2/leu2

text: RPMI; 37 degree celsius

text: Candida albicans

text: Candida albicans

text: Candida albicans


text: University of Kent

text: public

text: ArrayExpress

characteristic: broker name

text: YPD; 30 degree celsius

text: Candida albicans

text: Candida albicans

text: Candida albicans


E-MTAB-6919:HC-04 B1

text: UNIVERSITY OF FLORIDA

text: public

text: E-MTAB-6919:HC-04 B1

tag: Namespace:UNIVERSITY OF FLORIDA

text: ArrayExpress

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cells were grown in appropriate media, in T75 flasks for 24 hours, media was removed and then cells were washed twice with PBS. TRIzol was added directly to the cells. Cells were split at a 90% confluent culture by digesting the monolayer in 5mL of 0.05% Trypsin-EDTA for 10 minutes or until cells lifted. The cell suspension was collected in a conical tube and centrifuged at 700xg for 7 minutes to ensure pelleting of the cells. Trypsin was removed, and cells were resuspended in media for plating, then plated at a 1:10 dilution in a new T75 flask in fresh IMDM with 5% HIFBS, 200 units/mL penicillin, and 200 µg/mL streptomycin for maintenance of line. Following addition of TRIzol, samples were transferred to 1.5 mL tubes. Preparation of RNA was done following manufacturers instructions. Approximately 500 ng of protein-free and intact total RNA was used for library construction using the reagents provided in the NEBNext Ultra II RNA Library Prep following the manufacturer's protocol. First, 2 µL of diluted RNA was spiked with ERCC from the kit. Next, mRNA isolation was performed using the NEBNext Poly(A) mRNA Magnetic Isolation module (New England Biolabs). Then RNA was fragmented in a solution containing divalent cations, with incubation at 94°C. Next, first strand cDNA synthesis using reverse transcriptase and random primers was done. Synthesis of double stranded cDNA was done using the second strand master mix provided in the kit, followed by end-repair and dA-tailing. At this point, Illumina adaptors were ligated to the sample. Finally, the library was enriched by 11 cycles of amplification and purified by Agencourt AMPure beads (Beckman Coulter). Barcoded libraries were sized on the bioanalyzer and quantitated by QUBIT. Quantitative PCR was used to validate the library's functionality, using the KAPA Library Quantification kit (Kapa Biosystem) and monitoring with the BioRad Touch Real-Time PCR Detection System. Individual libraries were pooled equimolarly for sequencing runs.

characteristic: description

text: hepatoblastoma

characteristic: disease

text: basic medium

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: wild type

characteristic: phenotype

characteristic: replicate

text: Homo sapiens

text: HC-04 B1


E-MTAB-6919:HC-04 B2

characteristic: External Id

text: UNIVERSITY OF FLORIDA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6919:HC-04 B2

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

text: basic medium

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HC-04 B2


E-MTAB-6919:HC-04 B3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF FLORIDA

text: public

characteristic: SRA accession

text: E-MTAB-6919:HC-04 B3

characteristic: Submitter Id

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

text: basic medium

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HC-04 B3

characteristic: title


E-MTAB-6919:HC-04 I1

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF FLORIDA

text: public

text: E-MTAB-6919:HC-04 I1

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: hepatoblastoma

text: IMDM

text: Homo sapiens

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HC-04 I1


E-MTAB-6919:HC-04 I2

characteristic: External Id

text: UNIVERSITY OF FLORIDA

characteristic: INSDC center name

text: public

text: E-MTAB-6919:HC-04 I2

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

characteristic: disease

text: IMDM

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: wild type

characteristic: phenotype

characteristic: replicate

text: Homo sapiens

text: HC-04 I2


E-MTAB-6919:HC-04 I3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF FLORIDA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6919:HC-04 I3

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

text: IMDM

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HC-04 I3


E-MTAB-6919:HC-04.J7 B1

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF FLORIDA

text: public

characteristic: SRA accession

text: E-MTAB-6919:HC-04.J7 B1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: human

text: hepatoblastoma

text: basic medium

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: high parasite invasion

text: Homo sapiens

text: HC-04.J7 B1

characteristic: title


E-MTAB-6919:HC-04.J7 B2

characteristic: External Id

text: UNIVERSITY OF FLORIDA

characteristic: INSDC center name

text: public

text: E-MTAB-6919:HC-04.J7 B2

text: ArrayExpress

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: hepatoblastoma

text: basic medium

text: Homo sapiens

text: Homo sapiens

text: liver

text: high parasite invasion

text: Homo sapiens

text: HC-04.J7 B2


E-MTAB-6919:HC-04.J7 B3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF FLORIDA

text: public

text: E-MTAB-6919:HC-04.J7 B3

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

characteristic: disease

text: basic medium

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: high parasite invasion

characteristic: phenotype

characteristic: replicate

text: Homo sapiens

text: HC-04.J7 B3


E-MTAB-6919:HC-04.J7 I1

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF FLORIDA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6919:HC-04.J7 I1

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

text: IMDM

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: liver

text: high parasite invasion

text: Homo sapiens

text: HC-04.J7 I1


E-MTAB-6919:HC-04.J7 I2

characteristic: External Id

text: UNIVERSITY OF FLORIDA

characteristic: INSDC center name

text: public

text: E-MTAB-6919:HC-04.J7 I2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: human

text: hepatoblastoma

text: IMDM

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: high parasite invasion

text: Homo sapiens

text: HC-04.J7 I2

characteristic: title


E-MTAB-6919:HC-04.J7 I3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF FLORIDA

text: public

text: E-MTAB-6919:HC-04.J7 I3

text: ArrayExpress

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: hepatoblastoma

text: IMDM

text: Homo sapiens

text: Homo sapiens

text: liver

text: high parasite invasion

text: Homo sapiens

text: HC-04.J7 I3


E-MTAB-6919:HepG2 B1

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF FLORIDA

characteristic: INSDC first public

text: public

text: E-MTAB-6919:HepG2 B1

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

characteristic: disease

text: basic medium

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: wild type

characteristic: phenotype

characteristic: replicate

text: Homo sapiens

text: HepG2 B1


E-MTAB-6919:HepG2 B2

characteristic: External Id

text: UNIVERSITY OF FLORIDA

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6919:HepG2 B2

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

text: basic medium

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HepG2 B2


E-MTAB-6919:HepG2 B3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF FLORIDA

text: public

text: E-MTAB-6919:HepG2 B3

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: hepatocyte

text: human

text: hepatoblastoma

text: basic medium

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HepG2 B3

characteristic: title


E-MTAB-6919:HepG2 I1

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF FLORIDA

characteristic: INSDC first public

text: public

text: E-MTAB-6919:HepG2 I1

text: ArrayExpress

characteristic: cell line

text: hepatocyte

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: hepatoblastoma

text: IMDM

text: Homo sapiens

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HepG2 I1


E-MTAB-6919:HepG2 I2

characteristic: External Id

text: UNIVERSITY OF FLORIDA

characteristic: INSDC center name

text: public

text: E-MTAB-6919:HepG2 I2

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

characteristic: disease

text: IMDM

text: Homo sapiens

text: Homo sapiens

text: liver

characteristic: organism part

text: wild type

characteristic: phenotype

characteristic: replicate

text: Homo sapiens

text: HepG2 I2


E-MTAB-6919:HepG2 I3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF FLORIDA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6919:HepG2 I3

text: ArrayExpress

text: hepatocyte

text: human

text: hepatoblastoma

text: IMDM

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: liver

text: wild type

text: Homo sapiens

text: HepG2 I3


characteristic: ENA-LAST-UPDATE

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC first public

text: public

tag: Namespace:PUBLIC HEALTH ENGLAND

characteristic: Submitter Id

characteristic: collection date

text: CTX-M-15 producer

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: culture

characteristic: isolate

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: EO499 Parent strain

characteristic: title


tag: attribute

characteristic: External Id

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

text: public

text: Ceftazidime-avibactam selected

characteristic: description

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: EO499 mutant 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CTX-M15 producer

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: EO533 Parent strain


characteristic: ENA-LAST-UPDATE

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: EO533 mutant 2


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: Submitter Id

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: EO533 mutant 3


text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: culture

characteristic: isolate

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: EO533 mutant 5


characteristic: External Id

text: PUBLIC HEALTH ENGLAND

text: public

text: TEM-10 producer

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: J53 Parent strain

characteristic: title


text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

text: public

text: Ceftazidime-avibactam selected

characteristic: description

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: J53 mutant 2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC last update

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: J53 mutant 3


characteristic: ENA-LAST-UPDATE

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: J53 mutant 4


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Escherichia coli

text: Escherichia coli

text: J53 mutant 5


text: PUBLIC HEALTH ENGLAND

text: public

text: SHV-2 producer

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: not provided

characteristic: host scientific name

text: culture

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Mei 838 Parent strain


characteristic: External Id

text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

characteristic: isolate

text: Laboratory

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

text: Mei 838 mutant 6


text: PUBLIC HEALTH ENGLAND

characteristic: INSDC center name

text: public

text: Ceftazidime-avibactam selected

characteristic: description

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Mei 838 mutant 7

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PUBLIC HEALTH ENGLAND

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Mei 838 mutant 8


characteristic: ENA-LAST-UPDATE

text: PUBLIC HEALTH ENGLAND

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Ceftazidime-avibactam selected

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Laboratory

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Mei 838 mutant 9


text: PUBLIC HEALTH ENGLAND

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SHV-5 producer

text: United Kingdom

text: not provided

text: not provided

text: culture

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Mei 254 Parent strain