characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 362_172_1_10_2012-sc-2013-07-15T10:27:22Z-1658582

text: United Kingdom: England

text: carriage

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens

characteristic: specific host

characteristic: strain


status: PUBLIC

tag: attribute

text: SC

text: public

characteristic: INSDC status

text: USA

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: Bacteremia

characteristic: host status

characteristic: isolate

text: BLOOD

characteristic: isolation source

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: sub strain

characteristic: title

type: AMR curated data - CABBAGE

value: chloramphenicol

value: CLSI

value: broth dilution

value: mg/L

value: susceptible

value: Streptococcus pneumoniae

value: trimethoprim-sulfamethoxazole

value: penicillin

value: erythromycin

value: tetracycline


text: Pseudomonas aeruginosa

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

text: blood

text: blood

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

text: human

characteristic: specific host

value: ampicillin

value: EUCAST

value: Vitek

value: resistant

value: Enterococcus faecium

value: vancomycin


text: Salmonella enterica subsp. enterica serovar Typhi

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Fiji

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

characteristic: organism

characteristic: serovar

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 362_172_24_9_2012-sc-2013-07-15T10:26:46Z-1658547

characteristic: Submitter Id

characteristic: anonymized name

text: United Kingdom: England

text: carriage

characteristic: host status

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens

characteristic: strain


text: Mycobacterium tuberculosis

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: 30401778; 28362945

text: SC

text: public

text: GBR

characteristic: collection date

text: United Kingdom

characteristic: country

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: isolate

text: blood

characteristic: isolation source

text: blood

text: Enterococcus faecium

characteristic: organism

characteristic: sample description

text: Enterococcus faecium

text: human

characteristic: specific host


characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 382_193_23_10_2012-sc-2013-07-15T10:28:42Z-1658665

text: United Kingdom: England

text: carriage

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Homo sapiens

characteristic: title


characteristic: ENA last update

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Ghana

characteristic: country

text: carriage

characteristic: host status

text: pharynx

text: Neisseria meningitidis

text: Neisseria meningitidis

text: W

text: human

characteristic: strain


text: Vibrio cholerae

characteristic: ArrayExpress-Species

text: Guinea 2012

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SC

text: public

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

text: Guinea 2012


text: Enterococcus malodoratus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Enterococcus malodoratus

characteristic: sample description

text: Enterococcus malodoratus


text: 30401778; 28362945

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GBR

characteristic: Submitter Id

text: Brodrick HJ, Peacock SJ

characteristic: collected by

text: United Kingdom

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: carriage

text: Brodrick HJ

characteristic: identified by

characteristic: isolate

text: Faeces

characteristic: isolation source

text: gastrointestinal system

text: Enterococcus faecium

text: Enterococcus faecium

text: Homo sapiens

characteristic: specific host

characteristic: title


text: Neisseria meningitidis

characteristic: ArrayExpress-Species

text: W

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

text: W

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: USA

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

text: Homo sapiens

text: Bacteremia

characteristic: host status

text: BLOOD

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: sub strain


text: Enterococcus faecium

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: Submitter Id

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Malta

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

characteristic: organism

text: Not known

text: Homo sapiens

characteristic: specific host

characteristic: strain

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: Cambodia

characteristic: country

text: Cambodia

text: Not known

text: disease: typhoid fever

characteristic: host status

text: blood

characteristic: lat lon

text: Typhi

characteristic: serovar

text: Homo sapiens


text: Streptococcus pyogenes

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: H102900217-sc-2013-06-18T13:28:20Z-1648833

characteristic: Submitter Id

text: Streptococcus pyogenes

text: Streptococcus pyogenes


characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

characteristic: organism

text: Homo sapiens

characteristic: specific host

characteristic: strain

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: India

text: Not known

text: Not known

characteristic: serovar

text: Homo sapiens


text: Vibrio cholerae

characteristic: ArrayExpress-Species

text: DRC 2009

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: DRC 2009


characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

text: public

text: PNG

characteristic: Submitter Id

text: Salmonella

characteristic: genus

text: Papua New Guinea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

characteristic: isolate

text: Not known

characteristic: isolation source

text: Not known

text: Homo sapiens

value: agar dilution

value: Salmonella enterica

value: sulfamethoxazole

value: spectinomycin

value: ciprofloxacin

value: trimethoprim

value: kanamycin

value: nalidixic acid

value: gentamicin


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: disease

characteristic: host status

text: Blood culture

text: Enterococcus faecalis

characteristic: organism

characteristic: sample description

text: Enterococcus faecalis

text: Human

characteristic: specific host

characteristic: strain

characteristic: title


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

characteristic: Submitter Id

text: United Kingdom

text: Enterococcus

characteristic: genus

text: Homo sapiens

text: disease

text: blood

text: blood

text: Enterococcus faecium

text: Enterococcus faecium

text: human

value: broth dilution

value: susceptible


text: Pseudomonas aeruginosa

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: SC

text: public

text: USA

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

text: Homo sapiens

characteristic: host

text: Otitis

characteristic: host status

characteristic: isolate

text: BLOOD

characteristic: isolation source

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: sub strain

value: chloramphenicol

value: CLSI

value: mg/L

value: Streptococcus pneumoniae

value: penicillin

value: tetracycline

value: erythromycin

value: trimethoprim-sulfamethoxazole


text: 31358980; 32163577; 32163580

text: Neisseria gonorrhoeae

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: IND

text: IN_10_1832-sc-2013-06-19T11:53:27Z-1649125

characteristic: Submitter Id

text: Neisseria

characteristic: genus

text: Homo sapiens

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: strain

value: ceftriaxone

value: e-test

value: Neisseria gonorrhoeae

value: azithromycin

value: cefixime


text: Vibrio cholerae

characteristic: ArrayExpress-Species

text: DRC 2007

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vibrio cholerae

text: Vibrio cholerae

text: DRC 2007


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: not available: not collected

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

characteristic: organism

text: Homo sapiens

characteristic: specific host

characteristic: title


text: Wildtype

characteristic: ArrayExpress-Genotype

text: Betacoronavirus

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: JMERS_33-sc-2013-06-18T14:24:49Z-1650108

characteristic: Submitter Id

text: Betacoronavirus

text: cDNA

characteristic: sample description

text: Betacoronavirus


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: USA

characteristic: SRA accession

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: Bacteremia

characteristic: host status

characteristic: isolate

text: BLOOD

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: strain

characteristic: sub strain

value: resistant

value: intermediate


text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: STM910_12-sc-2013-07-03T16:37:46Z-1658516

characteristic: organism


characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 366_176_25_09_2012-sc-2013-07-15T10:27:07Z-1658568

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: United Kingdom: England

text: carriage

text: nasopharynx

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens

characteristic: specific host

characteristic: title


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: OXF

text: public

characteristic: SRA accession

characteristic: description

text: Norovirus Hu/GII.4/Orange/NSW001P/2008/AU


text: Streptococcus pneumoniae

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: 383_195_23_10_2012-sc-2013-07-15T10:28:49Z-1658672

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Democratic Republic of the Congo

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: organism

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: strain


text: 26974227; 34001879

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: NPL

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Nepal

characteristic: country

text: Salmonella

characteristic: genus

text: Nepal

text: Homo sapiens

characteristic: host

text: Not known

text: disease: typhoid fever

characteristic: host status

characteristic: isolate

text: blood

characteristic: isolation source

text: blood

text: Typhi

text: Homo sapiens

value: ciprofloxacin

value: Salmonella enterica


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: GBR

characteristic: SRA accession

text: Enterococcus

text: Homo sapiens

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

value: ampicillin

value: EUCAST

value: broth dilution

value: Vitek

value: Enterococcus faecium

value: vancomycin


text: whole organism

characteristic: ArrayExpress-CellType

text: Schistosomula larvae stage, intramammalian stage.

characteristic: ArrayExpress-DevelopmentalStage

text: mixed

characteristic: ArrayExpress-Sex

text: Schistosoma mansoni

text: Puerto Rican

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Schistosoma_mansoni-sc-2013-07-08T12:51:16Z-1660614

characteristic: Submitter Id

text: Schistosoma mansoni

characteristic: organism

text: Schistosoma mansoni

text: Puerto Rican

characteristic: strain

characteristic: title


characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

characteristic: serovar

text: Homo sapiens

characteristic: specific host


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: 362_172_17_10_2012-sc-2013-07-15T10:28:17Z-1658639

text: United Kingdom: England

characteristic: country

text: carriage

characteristic: host status

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens


text: Neisseria meningitidis

characteristic: ArrayExpress-Species

text: W

characteristic: ArrayExpress-StrainOrLine

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

text: W

characteristic: strain


text: 30401778; 28362945

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: GBR

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: isolate

text: blood

characteristic: isolation source

text: blood

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

text: human

characteristic: title

value: susceptible


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: USA

characteristic: SRA accession

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

text: Homo sapiens

text: Pneumonia

characteristic: host status

text: PLEURAL FLUID

text: internal organs and fluids

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: sub strain

value: tetracycline

value: CLSI

value: mg/L

value: Streptococcus pneumoniae

value: erythromycin

value: chloramphenicol

value: penicillin

value: trimethoprim-sulfamethoxazole


text: Streptococcus pyogenes

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: H100460118-sc-2013-06-18T13:28:05Z-1648821

characteristic: Submitter Id

text: Streptococcus pyogenes

characteristic: organism

text: Streptococcus pyogenes


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GBR

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: isolate

text: blood

characteristic: isolation source

text: blood

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

text: human

characteristic: strain

characteristic: title

value: resistant


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: USA

characteristic: SRA accession

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

text: Homo sapiens

text: Bacteremia

characteristic: host status

text: BLOOD

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: sub strain

value: intermediate


text: Mycobacterium tuberculosis

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: M99006107-sc-2013-07-18T13:31:37Z-1657575

characteristic: Submitter Id

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


text: Vibrio cholerae

text: DRC 2012

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: DRC 2012

characteristic: strain


text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: Sudan

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

text: Not known

text: Homo sapiens

characteristic: title


text: Mycobacterium tuberculosis

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: M04001208-sc-2013-07-18T13:32:45Z-1657640

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Clostridium difficile

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Cdiff_027_4_2-sc-2013-07-10T11:26:16Z-1660797

characteristic: Submitter Id

text: Peptoclostridium difficile

characteristic: organism

text: Peptoclostridium difficile


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: GBR

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: strain

value: ampicillin


text: Enterococcus casseliflavus

text: SC

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Enterococcus casseliflavus

characteristic: sample description

text: Enterococcus casseliflavus


text: Vibrio cholerae

characteristic: ArrayExpress-Species

text: zambia 2012

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: zambia 2012


text: 26974227; 34001879

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: India

characteristic: country

text: Salmonella

text: India

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: disease: typhoid fever

characteristic: host status

text: blood

characteristic: isolation source

text: blood

text: Salmonella enterica subsp. enterica serovar Typhi

text: Typhi

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: title

value: ciprofloxacin

value: e-test

value: Salmonella enterica


characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Viet Nam

text: Not known

text: Not known

characteristic: organism

text: Homo sapiens

characteristic: strain


characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession


text: Pseudomonas aeruginosa

text: SC

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Enterococcus faecium

text: SC

text: public

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium


text: Mycobacterium tuberculosis

text: SC

text: public

text: M01003640-sc-2013-07-18T13:32:09Z-1657604

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Mycobacterium tuberculosis

text: SC

text: public

text: M01005178-sc-2013-07-18T13:32:12Z-1657607

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: 30401778; 28362945

text: SC

text: public

text: GBR

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: host status

characteristic: isolate

text: blood

characteristic: isolation source

text: blood

text: Enterococcus faecium

text: Enterococcus faecium

text: human

characteristic: specific host

value: EUCAST

value: broth dilution

value: Vitek

value: Enterococcus faecium


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: Submitter Id

text: United Kingdom

text: Enterococcus

text: Homo sapiens

text: disease

text: blood

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

text: human

characteristic: title

value: susceptible

value: vancomycin


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GBR

characteristic: SRA accession

text: Enterococcus

text: Homo sapiens

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

characteristic: strain


text: SC

text: public

text: USA

characteristic: anonymized name

characteristic: collection date

text: Streptococcus pneumoniae

characteristic: common name

text: USA

characteristic: country

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: Bacteremia

characteristic: host status

characteristic: isolate

text: BLOOD

characteristic: isolation source

text: blood

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: specific host

characteristic: sub strain

value: tetracycline

value: CLSI

value: mg/L

value: Streptococcus pneumoniae


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: Submitter Id

text: Enterococcus

text: Homo sapiens

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: Mycobacterium tuberculosis

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: SRA accession

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: 31358980; 32163577; 32163580

text: Neisseria gonorrhoeae

text: SC

text: public

text: IND

text: IN_09_3090-sc-2013-06-19T11:53:08Z-1649108

text: Neisseria

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: strain

value: penicillin

value: Neisseria gonorrhoeae

value: azithromycin

value: cefixime

value: spectinomycin

value: ceftriaxone


text: 30401778; 28362945

text: SC

text: public

text: GBR

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: Enterococcus

text: Homo sapiens

text: disease

characteristic: host status

text: blood

characteristic: isolation source

text: blood

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

text: human

characteristic: specific host

characteristic: title

value: resistant

value: ampicillin


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

text: Brodrick HJ, Peacock SJ

characteristic: collected by

text: United Kingdom

text: Enterococcus

text: Homo sapiens

text: carriage

text: Brodrick HJ

characteristic: identified by

text: Faeces

text: gastrointestinal system

text: Enterococcus faecium

text: Enterococcus faecium

text: Homo sapiens

value: EUCAST

value: broth dilution


text: 30401778; 28362945

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: United Kingdom

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: isolate

text: blood

text: blood

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

text: human

characteristic: strain

value: Vitek

value: Enterococcus faecium


characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: collection date

text: Malawi

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: title


characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Viet Nam

text: Not known

text: Not known

text: Homo sapiens


characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: anonymized name

text: Indonesia

text: Not known

text: Not known

characteristic: organism

text: Not known

text: Homo sapiens

characteristic: strain


text: SC

text: public

text: PNG

characteristic: collection date

text: Salmonella

characteristic: genus

text: Papua New Guinea

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host

text: Not known

characteristic: host health state

characteristic: isolate

text: Not known

characteristic: isolation source

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

value: trimethoprim

value: agar dilution

value: susceptible

value: Salmonella enterica

value: nalidixic acid

value: sulfamethoxazole

value: cefotaxime

value: ciprofloxacin

value: gentamicin

value: chloramphenicol

value: kanamycin


text: Haemophilus parasuis

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: [Haemophilus] parasuis

text: [Haemophilus] parasuis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: WCPN

text: public

characteristic: Submitter Id

unit: week

characteristic: age

characteristic: collection date

characteristic: description

text: HPLC

characteristic: diet

text: GI

characteristic: environment (biome)

text: feces

characteristic: environment (material)

text: USA

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Illumina

characteristic: sequencing method

text: Kitten Microbiome

characteristic: title

type: has member


characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

text: India

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: strain


text: 31358980; 32163577; 32163580; 33785063

text: Neisseria gonorrhoeae

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: JPN

characteristic: Submitter Id

text: Neisseria

characteristic: genus

text: Homo sapiens

characteristic: host

text: female

characteristic: isolate

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

value: cefixime

value: e-test

value: mg/L

value: Neisseria gonorrhoeae

value: ceftriaxone

value: spectinomycin

value: levofloxacin

value: resistant

value: azithromycin

value: penicillin

value: tetracycline


text: Vibrio cholerae

text: DRC 2009

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: DRC 2009


text: 26974227; 34001879

text: SC

text: public

characteristic: INSDC status

text: NPL

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: Nepal

characteristic: country

text: Salmonella

text: Nepal

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Not known

characteristic: host health state

text: disease: typhoid fever

characteristic: host status

text: blood

characteristic: isolation source

text: blood

text: Typhi

characteristic: serovar

text: Homo sapiens

characteristic: title

value: CLSI

value: intermediate

value: Salmonella enterica


text: Neisseria meningitidis

characteristic: ArrayExpress-Species

text: W

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: Submitter Id

text: Neisseria meningitidis

characteristic: organism

text: Neisseria meningitidis

text: W

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 381_192_30_10_2012-sc-2013-07-15T10:29:26Z-1658713

text: United Kingdom: England

text: carriage

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens

characteristic: specific host


text: SC

text: public

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: Cambodia

characteristic: country

text: Cambodia

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: disease: typhoid fever

characteristic: host status

text: blood

characteristic: isolation source

characteristic: lat lon

text: Typhi

text: Homo sapiens


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: GBR

characteristic: Submitter Id

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Enterococcus faecium

characteristic: organism

characteristic: sample description

text: Enterococcus faecium

characteristic: strain

value: ampicillin

value: EUCAST

value: broth dilution

value: Vitek

value: Enterococcus faecium

value: vancomycin


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

text: Enterococcus

text: Homo sapiens

text: Enterococcus faecium

text: Enterococcus faecium


text: Mycobacterium tuberculosis

characteristic: ArrayExpress-Species

text: SC

text: public

text: M01002803-sc-2013-07-18T13:32:04Z-1657599

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


text: Pseudomonas aeruginosa

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: GBR

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: Enterococcus

text: Homo sapiens

text: disease

characteristic: host status

text: blood

characteristic: isolation source

text: blood

text: Enterococcus faecium

text: Enterococcus faecium

text: human

characteristic: specific host

characteristic: title

value: susceptible


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: USA

characteristic: Submitter Id

text: Streptococcus pneumoniae

characteristic: common name

text: USA

text: Streptococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: Bacteremia

characteristic: isolate

text: BLOOD

text: blood

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: serovar

text: Human

characteristic: strain

characteristic: sub strain

value: chloramphenicol

value: mg/L

value: Streptococcus pneumoniae

value: trimethoprim-sulfamethoxazole

value: erythromycin


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

text: disease

text: Blood culture

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Human


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: 381_192_11_10_2012-sc-2013-07-15T10:28:05Z-1658626

characteristic: Submitter Id

text: United Kingdom: England

characteristic: country

text: carriage

characteristic: host status

text: nasopharynx

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Homo sapiens

characteristic: specific host

characteristic: title


text: Mycobacterium tuberculosis

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis


text: 30401778; 28362945

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: GBR

text: United Kingdom

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: isolate

text: blood

text: blood

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

text: human

characteristic: strain

value: resistant


text: 30401778; 28362945

text: Enterococcus faecium

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

text: Enterococcus

text: Homo sapiens

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Samoa

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

text: Not known

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: title


text: Enterococcus faecium

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

characteristic: isolate

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: strain


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: GBR

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: United Kingdom

characteristic: country

text: Enterococcus

text: Homo sapiens

text: disease

characteristic: host status

text: blood

text: blood

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

text: human


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 391_203_24_10_2012-sc-2013-07-15T10:29:01Z-1658685

characteristic: collection date

text: United Kingdom: England

text: carriage

text: nasopharynx

characteristic: isolation source

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: title


text: Enterococcus casseliflavus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Enterococcus casseliflavus

characteristic: organism

text: Enterococcus casseliflavus


text: Streptococcus pyogenes

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: H075140208-sc-2013-06-18T13:28:02Z-1648818

characteristic: Submitter Id

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: Enterococcus faecium

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Enterococcus faecium

characteristic: sample description

text: Enterococcus faecium

characteristic: strain


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: anonymized name

characteristic: collection date

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: Not known

characteristic: host health state

text: Not known

characteristic: isolation source

text: Homo sapiens


text: 30401778; 28362945

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: GBR

text: United Kingdom

characteristic: country

text: Enterococcus

characteristic: genus

text: Homo sapiens

characteristic: host

text: disease

characteristic: host status

characteristic: isolate

text: blood

text: blood

text: Enterococcus faecium

text: Enterococcus faecium

text: human

characteristic: specific host

characteristic: title


text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: ArrayExpress-Species

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: STM1279_07-sc-2013-07-03T16:37:15Z-1658487

characteristic: Submitter Id

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: OXF

characteristic: INSDC first public

text: public

characteristic: description

text: Norovirus Hu/GII.4/Orange/NSW001P/2008/AU


characteristic: External Id

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: United Kingdom

characteristic: country

text: disease

characteristic: host status

text: Blood culture

characteristic: isolation source

text: Enterococcus faecalis

characteristic: sample description

text: Enterococcus faecalis

text: Human

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 381_192_11_10_2012-sc-2013-07-15T10:28:03Z-1658624

text: United Kingdom: England

text: carriage

text: nasopharynx

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Homo sapiens

characteristic: specific host

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: GSC

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Station23 - Deep Chlorophyl Maximum and Surface Pool - 0-0.2 µm - DNA

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Shotgun Sequencing of Tara Oceans DNA samples corresponding to size fractions for DNA viruses


characteristic: External Id

text: GSC

text: public

text: Station30 - Deep Chlorophyl Maximum and Surface Pool - 0-0.2 µm - DNA

characteristic: description

text: marine metagenome

text: marine metagenome


status: KILLED

text: 500 L

unit: g

characteristic: Amount or size of sample collected

characteristic: Collection date

unit: m

characteristic: Depth

text: GSC:MIxS v2.1

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: Elevation

text: water

characteristic: Enviornmental package

text: neritic epipelagic zone biome

characteristic: Environment (biome)

text: marine bulk water

characteristic: Environment (featurel)

text: sea water

characteristic: Environment (material)

text: Helgoland Roads, German Bight, North Sea

characteristic: Geographic location (latitude)

characteristic: Geographic location (longitude)

text: MPI BREMEN

text: killed

text: MIMS

characteristic: Investigation type

text: MIMAS

characteristic: Project name

text: Pyrosequencing

characteristic: Sequencing method

tag: Namespace:MPI BREMEN

text: n.d.

characteristic: ammonium

text: EMG

characteristic: broker name

text: n.d.

characteristic: chlorophyll

text: seawater was pumped into a 500 L carboy, brought ashore, subsequently filtered through 10 µm - and 3 µm - pore-size polycarbonate filters and finally filtered onto 0.2 µm pore-size polyethersulfone filter, frozen at -80°C

text: n.d.

characteristic: nitrate

text: n.d.

characteristic: nitrite

text: marine metagenome

text: n.d.

characteristic: phosphate

text: n.d.

characteristic: salinity

text: marine metagenome

text: n.d.

characteristic: silicate

text: n.d.

characteristic: temperature

text: MIMAS bulk DNA


text: Plasmodium sp.

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Plasmodium sp.

characteristic: organism

text: Plasmodium sp.


text: Bacteria

characteristic: ArrayExpress-CellType

text: Wildtype

characteristic: ArrayExpress-Genotype

text: LB Broth

characteristic: ArrayExpress-GrowthCondition

text: shaking at 37C

characteristic: ArrayExpress-Immunoprecipitate

text: whole cell

characteristic: ArrayExpress-Phenotype

text: K pneumonia Ecl8 WT

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Klebsiella_pneumoniae_Ecl8-sc-2012-11-30T16:20:39Z-1354287

text: Klebsiella pneumoniae

text: RNA from bacteria was converted to single stranded cDNA as described in Croucher et al (2009)_NAR_A simple method for Directional Transcriptome Sequencing.

characteristic: sample description

text: Klebsiella pneumoniae

characteristic: strain


text: Bacteria

text: delta ramA

text: LB Broth

text: shaking at 37C

text: whole cell

text: K pneumonia Ecl8 deltaramA

characteristic: ArrayExpress-Species

text: Ecl8 deltaramA

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Klebsiella_pneumoniae_Ecl8_deltaramA-sc-2012-11-30T16:20:47Z-1354291

text: Klebsiella pneumoniae

text: RNA from bacteria

text: Klebsiella pneumoniae

text: Ecl8 deltaramA


text: Bacteria

text: delta ramR

text: LB Broth

text: shaking at 37C

text: whole cell

text: K pneumonia Ecl8 deltaramR

text: Ecl8 deltaramR

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella_pneumoniae_Ecl8_deltaramR-sc-2012-11-30T16:20:51Z-1354293

text: Klebsiella pneumoniae

text: RNA from bacteria

text: Klebsiella pneumoniae

text: Ecl8 deltaramR


text: Bacteria

text: Wildtype

text: LB Broth

text: shaking at 37C

text: whole cell

text: K pneumonia Ecl8 WT

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Klebsiella_pneumoniae_Ecl8-sc-2012-11-30T16:20:42Z-1354288

text: Klebsiella pneumoniae

text: RNA from bacteria

text: Klebsiella pneumoniae


text: Bacteria

characteristic: ArrayExpress-CellType

text: delta ramA

text: LB Broth

text: shaking at 37C

text: whole cell

text: K pneumonia Ecl8 deltaramA

text: Ecl8 deltaramA

text: SC

text: public

text: Klebsiella_pneumoniae_Ecl8_deltaramA-sc-2012-11-30T16:20:46Z-1354290

characteristic: Submitter Id

text: Klebsiella pneumoniae

characteristic: organism

text: RNA from bacteria

text: Klebsiella pneumoniae

text: Ecl8 deltaramA


text: Bacteria

text: delta ramA

characteristic: ArrayExpress-Genotype

text: LB Broth

characteristic: ArrayExpress-GrowthCondition

text: shaking at 37C

characteristic: ArrayExpress-Immunoprecipitate

text: whole cell

text: K pneumonia Ecl8 deltaramA

text: Ecl8 deltaramA

text: SC

text: public

text: Klebsiella_pneumoniae_Ecl8_deltaramA-sc-2012-11-30T16:20:44Z-1354289

text: Klebsiella pneumoniae

text: RNA from bacteria

text: Klebsiella pneumoniae

text: Ecl8 deltaramA


text: Bacteria

text: delta ramR

text: LB Broth

text: shaking at 37C

text: whole cell

characteristic: ArrayExpress-Phenotype

text: K pneumonia Ecl8 deltaramR

text: Ecl8 deltaramR

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

text: Klebsiella_pneumoniae_Ecl8_deltaramR-sc-2012-11-30T16:20:49Z-1354292

text: Klebsiella pneumoniae

text: RNA from bacteria

characteristic: sample description

text: Klebsiella pneumoniae

text: Ecl8 deltaramR


text: Bacteria

text: delta ramR

text: LB Broth

text: shaking at 37C

text: whole cell

text: K pneumonia Ecl8 deltaramR

characteristic: ArrayExpress-Species

text: Ecl8 deltaramR

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella_pneumoniae_Ecl8_deltaramR-sc-2012-11-30T16:20:52Z-1354294

text: Klebsiella pneumoniae

text: RNA from bacteria

text: Klebsiella pneumoniae

text: Ecl8 deltaramR

characteristic: strain


text: Escherichia coli

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Escherichia coli

text: Escherichia coli


text: Burkholderia gladioli

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Burkholderia gladioli

text: Burkholderia gladioli


text: Burkholderia pseudomallei

text: SC

text: public

text: 2002721171-sc-2013-08-02T09:26:15Z-1674538

characteristic: Submitter Id

text: Burkholderia pseudomallei

characteristic: organism

text: Burkholderia pseudomallei


text: Burkholderia pseudomallei

text: SC

text: public

text: 2002721183-sc-2013-08-02T09:26:16Z-1674539

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei


text: Burkholderia pseudomallei

text: SC

text: public

text: 2002721640-sc-2013-08-02T09:26:18Z-1674540

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei


text: Burkholderia pseudomallei

text: SC

text: public

text: Burkholderia pseudomallei

text: Burkholderia pseudomallei


text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

text: ICTAR

text: public

unit: L

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: depth

text: Tramway Ridge Site A, 0-2 cm depth

characteristic: description

text: terrestrial geothermal fumarole

characteristic: environment (biome)

text: fumarole

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Antarctica

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CTAB-BME (Barrett, 2006)

characteristic: nucleic acid extraction

text: metagenome

characteristic: ph

text: Novel subsurface lineages dominate fumarolic microbial communities at Tramway Ridge, Mt. Erebus, Antarctica

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

unit: ºC

characteristic: temperature

text: iron-silica sediments

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: ICTAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: depth

text: Tramway Ridge Site A, 2-4 cm depth

text: terrestrial geothermal fumarole

text: fumarole

text: soil

text: Antarctica

text: metagenome

text: CTAB-BME (Barrett, 2006)

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: Pyrosequencing

text: 16S rRNA

text: iron-silica sediments


text: SRA-Webin

text: ICTAR

text: public

text: Tramway Ridge Site A, 4-8 cm depth

characteristic: description

text: terrestrial geothermal fumarole

characteristic: environment (biome)

text: fumarole

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Antarctica

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CTAB-BME (Barrett, 2006)

characteristic: nucleic acid extraction

text: metagenome

characteristic: ph

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: temperature

text: iron-silica sediments


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: ICTAR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: collection date

characteristic: depth

text: Tramway Ridge Site B, 2-4 cm depth

text: terrestrial geothermal fumarole

text: fumarole

text: soil

text: Antarctica

text: metagenome

text: CTAB-BME (Barrett, 2006)

text: metagenome

text: metagenome

text: sediment

text: Pyrosequencing

text: 16S rRNA

text: iron-silica sediments

characteristic: title


text: SRA-Webin

text: ICTAR

text: public

text: Tramway Ridge Site B, 0-2 cm depth

characteristic: description

text: terrestrial geothermal fumarole

characteristic: environment (biome)

text: fumarole

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Antarctica

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: CTAB-BME (Barrett, 2006)

characteristic: nucleic acid extraction

text: metagenome

characteristic: organism

characteristic: ph

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Pyrosequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

text: iron-silica sediments


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Coffea canephora

text: Coffea canephora


text: Klebsiella pneumoniae

characteristic: ArrayExpress-Species

text: SC

text: public

text: Kleb_1_NoArn-sc-2013-08-05T16:06:19Z-1676174

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Klebsiella pneumoniae

text: SC

text: public

text: Kleb_2_NoArn-sc-2013-08-05T16:06:25Z-1676175

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


text: Klebsiella pneumoniae

text: SC

text: public

text: Kleb_1_PlusArn-sc-2013-08-05T16:06:27Z-1676176

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Klebsiella pneumoniae

text: SC

text: public

text: Kleb_2_PlusArn-sc-2013-08-05T16:06:28Z-1676177

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Enterobacter cloacae

text: SC

text: public

text: Ent_1_NoArn-sc-2013-08-05T16:06:29Z-1676178

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Enterobacter cloacae

text: SC

text: public

text: Ent_2_NoArn-sc-2013-08-05T16:06:30Z-1676179

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Enterobacter cloacae

text: SC

text: public

text: Ent_1_PlusArn-sc-2013-08-05T16:06:31Z-1676180

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Enterobacter cloacae

text: SC

text: public

text: Ent_2_PlusArn-sc-2013-08-05T16:06:33Z-1676181

text: Enterobacter cloacae

text: Enterobacter cloacae


text: GSC

text: public

text: Kuraishia capsulata

text: Kuraishia capsulata


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1409-sc-2013-08-06T16:01:13Z-1676369

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1412-sc-2013-08-06T16:01:16Z-1676370

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1565-sc-2013-08-06T16:01:17Z-1676371

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1568-sc-2013-08-06T16:01:18Z-1676372

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1578-sc-2013-08-06T16:01:19Z-1676373

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1569-sc-2013-08-06T16:01:21Z-1676374

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC2041-sc-2013-08-06T16:01:22Z-1676375

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1580-sc-2013-08-06T16:01:23Z-1676376

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC1586-sc-2013-08-06T16:01:24Z-1676377

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC2043-sc-2013-08-06T16:01:25Z-1676378

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC2320-sc-2013-08-06T16:01:27Z-1676379

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC2125-sc-2013-08-06T16:01:28Z-1676380

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_91_LC2141-sc-2013-08-06T16:01:29Z-1676381

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_02_LH2206_per015_-sc-2013-08-06T16:01:30Z-1676382

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_PE_94_LC2368-sc-2013-08-06T16:01:32Z-1676383

text: Leishmania braziliensis

text: Leishmania braziliensis


text: Leishmania braziliensis

text: SC

text: public

text: MHOM_BO_94_L_3CH29B_CUM45_-sc-2013-08-06T16:01:33Z-1676384

text: Leishmania braziliensis

text: Leishmania braziliensis


text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Israel

characteristic: geographic location (country and/or sea)

text: Diseased

characteristic: host health state

text: Faeces

characteristic: isolation source

text: Shigella sonnei

text: Shigella sonnei

text: Human

characteristic: specific host

characteristic: strain

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

text: public

unit: year

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

text: fecal sample of Patient 1 (IBS-diarrhea) on day 37 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 2 stools (2 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 2 stools (2 in form of diarrhea)

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: wife of C1

characteristic: family relationship

text: irritable bowel syndrome, diarrhoea subtype

characteristic: gastrointestinal tract disorder

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

text: DNA and RNA were simultaneously extracted from cell pellets using the AllPrep DNA/RNA Mini Kit (QIAGEN)

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

text: Feces were self-collected by the volunteers in tubes containing 10 mL of phosphate buffered saline (PBS). Samples were kept at 4 ºC until their storage at -80 ºC (approximately 2 hours after being collected)

characteristic: sample collection device or method

text: Before nucleic acid extraction, fecal samples were resuspended in PBS and centrifuged at 4,000 rpm for 3 min to remove fecal debris. 1-4 mL of the supernatants were centrifuged at 14,000 rpm for 3 min to recover cell pellets

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: ex-smoker

characteristic: smoker

text: Patient 1 Day 37


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Control 1 on day 3 of the follow-up

characteristic: description

text: mediterranean diet

characteristic: diet

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: husband of P1

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: male

text: ex-smoker

text: Control 1 Day 3

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 7 of the follow-up; bowel symptoms: 4 stools (4 in form of diarrhea)

text: mediterranean diet

characteristic: disease status

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

characteristic: gastrointestinal tract disorder

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 7


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Control 1 on day 28 of the follow-up

characteristic: description

text: mediterranean diet

characteristic: diet

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: husband of P1

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: male

text: ex-smoker

text: Control 1 Day 28

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

text: public

text: feces

text: EMG

text: fecal sample of Control 1 on day 42 of the follow-up

text: mediterranean diet

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: husband of P1

characteristic: family relationship

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: ex-smoker

characteristic: smoker

text: Control 1 Day 42


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Patient 2 (IBS-diarrhea) on day 3 (afternoon) of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 11 stools (11 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 11 stools (11 in form of diarrhea)

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: unrelated to P1 and C1

characteristic: gastrointestinal tract disorder

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: female

text: smoker

text: Patient 2 Day 3.2

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 56 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 4 stools (4 in form of diarrhea)

text: mediterranean diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 4 stools (4 in form of diarrhea)

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 56


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Patient 2 (IBS-diarrhea) on day 27 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 4 stools (4 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: unrelated to P1 and C1

characteristic: gastrointestinal tract disorder

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: female

text: smoker

text: Patient 2 Day 27

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 28 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 7 stools (7 in form of diarrhea)

text: mediterranean diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 7 stools (7 in form of diarrhea)

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 28


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Patient 1 (IBS-diarrhea) on day 14 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 4 stools (2 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 4 stools (2 in form of diarrhea)

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: wife of C1

characteristic: gastrointestinal tract disorder

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: female

text: ex-smoker

text: Patient 1 Day 14

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 1 of the follow-up; bowel symptoms: presence of defecatory urgency, 3 stools (2 in form of diarrhea)

text: mediterranean diet

text: bowel symptoms: presence of defecatory urgency; 3 stools (2 in form of diarrhea)

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

text: irritable bowel syndrome, diarrhoea subtype

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 1


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Patient 1 (IBS-diarrhea) on day 5 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 3 stools (1 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 3 stools (1 in form of diarrhea)

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: wife of C1

characteristic: gastrointestinal tract disorder

text: MIxS

text: DNA and RNA were simultaneously extracted from cell pellets using the AllPrep DNA/RNA Mini Kit (QIAGEN)

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: Feces were self-collected by the volunteers in tubes containing 10 mL of phosphate buffered saline (PBS). Samples were kept at 4 ºC until their storage at -80 ºC (approximately 2 hours after being collected)

text: Before nucleic acid extraction, fecal samples were resuspended in PBS and centrifuged at 4,000 rpm for 3 min to remove fecal debris. 1-4 mL of the supernatants were centrifuged at 14,000 rpm for 3 min to recover cell pellets

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: female

text: ex-smoker

text: Patient 1 Day 5

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feces

text: EMG

text: fecal sample of Control 1 on day 7 of the follow-up

text: mediterranean diet

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: husband of P1

characteristic: family relationship

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: ex-smoker

characteristic: smoker

text: Control 1 Day 7


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Control 1 on day 21 of the follow-up

characteristic: description

text: mediterranean diet

characteristic: diet

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: husband of P1

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: male

text: ex-smoker

text: Control 1 Day 21

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC last update

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 42 of the follow-up; bowel symptoms: 5 stools (5 in form of diarrhea)

text: mediterranean diet

characteristic: disease status

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

characteristic: gastrointestinal tract disorder

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 42


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Patient 1 (IBS-diarrhea) on day 28 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 3 stools (2 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 3 stools (2 in form of diarrhea)

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: wife of C1

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: female

text: ex-smoker

text: Patient 1 Day 28

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 4 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 5 stools (5 in form of diarrhea)

text: mediterranean diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 5 stools (5 in form of diarrhea)

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

characteristic: gastrointestinal tract disorder

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 4


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Control 1 on day 5 of the follow-up

characteristic: description

text: mediterranean diet

characteristic: diet

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: husband of P1

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: male

text: ex-smoker

text: Control 1 Day 5

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

text: public

text: feces

text: EMG

text: fecal sample of Control 1 on day 37 of the follow-up

text: mediterranean diet

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: husband of P1

characteristic: family relationship

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: male

characteristic: sex

text: ex-smoker

characteristic: smoker

text: Control 1 Day 37


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: body mass index

text: feces

characteristic: body product

text: EMG

characteristic: broker name

characteristic: collection date

text: fecal sample of Patient 1 (IBS-diarrhea) on day 7 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 2 stools (1 in form of diarrhea)

characteristic: description

text: mediterranean diet

characteristic: diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 2 stools (1 in form of diarrhea)

characteristic: disease status

text: human-gut

characteristic: enviornmental package

text: terrestrial biome ENVO:00000446

characteristic: environment (biome)

text: human-associated habitat

text: feces

text: wife of C1

characteristic: gastrointestinal tract disorder

text: MIxS

text: human gut metagenome

characteristic: organism

text: Follow-up-IBS

text: -80 ºC

text: human gut metagenome

text: Pyrosequencing

text: female

text: ex-smoker

text: Patient 1 Day 7

characteristic: title


text: GSC:MIxS v2.1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC, MIxS, MIMS

characteristic: ENA-KEYWORD

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Spain

text: caucasian

characteristic: IHMC ethnicity

text: CSISP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: feces

text: EMG

text: fecal sample of Patient 2 (IBS-diarrhea) on day 5 of the follow-up; bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency, 4 stools (4 in form of diarrhea)

text: mediterranean diet

text: bowel symptoms: presence of abdominal pain, abdominal distension and defecatory urgency; 4 stools (4 in form of diarrhea)

text: human-gut

text: terrestrial biome ENVO:00000446

text: human-associated habitat

characteristic: environment (featurel)

text: feces

characteristic: environment (material)

text: unrelated to P1 and C1

characteristic: family relationship

text: irritable bowel syndrome, diarrhoea subtype

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: MIxS

characteristic: investigation type

characteristic: nucleic acid extraction

text: human gut metagenome

text: Follow-up-IBS

characteristic: project name

characteristic: sample collection device or method

characteristic: sample material processing

text: -80 ºC

characteristic: sample storage temperature

text: human gut metagenome

text: Pyrosequencing

characteristic: sequencing method

text: female

characteristic: sex

text: smoker

characteristic: smoker

text: Patient 2 Day 5