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characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

text: Canada

characteristic: geographic location (country and/or sea)

text: saliva

text: Portion of saliva

text: human-associated

text: metagenome

text: aggcaaga

text: Homo sapiens

text: progression

text: tccgttcg

text: Homo sapiens

text: Illumina MiSeq

text: Extremes of atherosclerosis

characteristic: title


characteristic: ENA-CHECKLIST

text: UWO

text: public

text: human

text: saliva

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

characteristic: host body product

text: Portion of saliva

characteristic: host body site

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: aggcaaga

characteristic: left barcode

text: Homo sapiens

characteristic: organism

text: progression

characteristic: plaque phenotype

characteristic: project name

characteristic: residual value

text: gaatccat

characteristic: right barcode

characteristic: sample id

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: Extremes of atherosclerosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UWO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: stool

text: Canada

characteristic: geographic location (country and/or sea)

text: stool

text: Portion of saliva

text: human-associated

text: metagenome

text: ccttggaa

text: Homo sapiens

text: progression

text: ttggaacc

text: Homo sapiens

text: Illumina MiSeq

text: Extremes of atherosclerosis

characteristic: title


characteristic: ENA-CHECKLIST

text: UWO

text: public

text: human

text: stool

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: stool

characteristic: host body product

text: Feces

characteristic: host body site

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: ccttggaa

characteristic: left barcode

text: Homo sapiens

characteristic: organism

text: progression

characteristic: plaque phenotype

characteristic: project name

characteristic: residual value

text: ggaacctt

characteristic: right barcode

characteristic: sample id

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: Extremes of atherosclerosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UWO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: stool

text: Canada

characteristic: geographic location (country and/or sea)

text: stool

text: Feces

text: human-associated

text: metagenome

text: ccttggaa

text: Homo sapiens

text: progression

text: aaccttgg

text: Homo sapiens

text: Illumina MiSeq

text: Extremes of atherosclerosis

characteristic: title


characteristic: ENA-CHECKLIST

text: UWO

text: public

text: human

text: saliva

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

characteristic: host body product

text: Feces

characteristic: host body site

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: tggcttcg

characteristic: left barcode

text: Homo sapiens

characteristic: organism

text: progression

characteristic: plaque phenotype

characteristic: project name

characteristic: residual value

text: ttccaagg

characteristic: right barcode

characteristic: sample id

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: Extremes of atherosclerosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UWO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

text: Canada

characteristic: geographic location (country and/or sea)

text: saliva

text: Portion of saliva

text: human-associated

text: metagenome

text: tggcttcg

text: Homo sapiens

text: progression

text: ccttggaa

text: Homo sapiens

text: Illumina MiSeq

text: Extremes of atherosclerosis

characteristic: title


characteristic: ENA-CHECKLIST

text: UWO

text: public

text: human

text: saliva

characteristic: environment (material)

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

characteristic: host body product

text: Portion of saliva

characteristic: host body site

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: tggcttcg

characteristic: left barcode

text: Homo sapiens

characteristic: organism

text: progression

characteristic: plaque phenotype

characteristic: project name

characteristic: residual value

text: ttggaacc

characteristic: right barcode

characteristic: sample id

text: Homo sapiens

text: Illumina MiSeq

characteristic: sequencing method

text: Extremes of atherosclerosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TUFTS UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:TUFTS UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

text: PBS

characteristic: description

text: Cryptosporidium parvum

text: Cryptosporidium parvum

characteristic: title


text: TUFTS UNIVERSITY

text: public

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum


text: TUFTS UNIVERSITY

text: public

text: PBS

text: Cryptosporidium hominis

text: Cryptosporidium hominis


text: 445 N Fifth St

text: public

tag: Namespace:445 N Fifth St

text: human

characteristic: common name

text: Temperate Forest

characteristic: environment (biome)

text: city

characteristic: environment (feature)

text: human

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

text: GBM12 sequencing samples


status: KILLED

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

characteristic: INSDC status

text: sam_FOHMtest_df00729a-561f-4852-bde9-843b41349878

tag: Namespace:Public Health Agency of Sweden

text: FOHM

text: Sweden

text: Homo sapiens

characteristic: host scientific name

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Walter and Eliza Hall Institute

text: public

characteristic: SRA accession

tag: Namespace:Walter and Eliza Hall Institute

characteristic: Submitter Id

characteristic: age

text: house mouse

characteristic: common name

text: RenLuc

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

characteristic: tissue type

characteristic: title

text: Leukaemic

characteristic: tumour stage


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Walter and Eliza Hall Institute

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: spleen

text: Leukaemic


characteristic: External Id

text: Walter and Eliza Hall Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

text: Leukaemic


text: Walter and Eliza Hall Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: Mus musculus

text: Pre-leukaemic


text: Walter and Eliza Hall Institute

text: public

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Mus musculus

text: Pre-leukaemic


text: Walter and Eliza Hall Institute

text: public

characteristic: Submitter Id

text: house mouse

text: Eu-Myc DNA (reference genome)

text: Mus musculus

text: Mus musculus


text: Walter and Eliza Hall Institute

text: public

text: house mouse

text: Ddit4 shRNA

text: Mus musculus

text: Mus musculus

text: Eu-Myc


text: Walter and Eliza Hall Institute

text: public

text: house mouse

text: Rnf144b shRNA

text: Mus musculus

text: Mus musculus

text: Eu-Myc


text: Walter and Eliza Hall Institute

text: public

text: house mouse

text: RenLuc shRNA (control)

text: Mus musculus

text: Mus musculus

text: RenLuc

text: Eu-Myc


text: Walter and Eliza Hall Institute

text: public

text: house mouse

text: p53 shRNA

text: Mus musculus

text: Mus musculus

text: Eu-Myc


text: Walter and Eliza Hall Institute

text: public

text: house mouse

text: Cav1 shRNA

text: Mus musculus

text: Mus musculus

text: Eu-Myc


text: WEIZMANN INSTITUE OF SCIENCE

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: E. coli; LB 37c OD=0.5; RNA treated with TAP before 5'-seq library preparation.

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. coli; LB 37c grown to OD=0.5

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 0 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 1 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 2 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 3 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 4 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 6 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 8 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 10 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 1; time = 15 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 0 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 1 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 2 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 3 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 4 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 5 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 6 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 8 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 10 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 15 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 2; time = 20 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 0 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 1 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 2 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 3 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 4 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 5 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 6 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 8 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 10 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 15 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. coli; LB 37c OD=0.5; repeat 3; time = 20 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 0 min

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 1 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 2 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 3 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 4 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 5 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 6 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 8 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 10 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Rifampicin assay; E. aerogenes; LB 37c OD=0.5; repeat 3; time = 15 min

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: S. typhimurium; LB 37c OD=0.5; repeat 1

text: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: S. typhimurium; LB 37c OD=0.5; repeat 2


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: S. typhimurium; LB 37c OD=0.5; repeat 3


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. coli; LB 37c OD=0.5; repeat 1

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. coli; LB 37c OD=0.5; repeat 2

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. coli; LB 37c OD=0.5; repeat 3

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: E. aerogenes; LB 37c OD=0.5

text: Klebsiella aerogenes KCTC 2190

text: Klebsiella aerogenes KCTC 2190


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: RNase E WT E. coli; LB, 10min exposure to 44c at OD=0.5; repeat 1

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: RNase E WT E. coli; LB, 10min exposure to 44c at OD=0.5; repeat 2

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: RNase E WT E. coli; LB, 10min exposure to 44c at OD=0.5; repeat 3

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: RNase E temperature sensitive mutant; LB, 10min exposure to 44c at OD=0.5; repeat 1

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: RNase E temperature sensitive mutant; LB, 10min exposure to 44c at OD=0.5; repeat 2

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: RNase E temperature sensitive mutant; LB, 10min exposure to 44c at OD=0.5; repeat 3

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_f64e704d-0c42-474f-bd09-04ea2e107d3c

text: FOHM

text: Sweden

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: subject id


characteristic: ENA-CHECKLIST

text: Amplexa Genetics

text: public

tag: Namespace:Amplexa Genetics

characteristic: collection date

text: Atlantic herring

text: 64.9675 N -6.7060 W

characteristic: lat lon

text: Clupea harengus

text: Clupea harengus

text: Kidney

characteristic: tissue type

text: Atlantic herring for wgs and de novo assembly

characteristic: title


text: Brown Trout

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: brown trout

text: Salmo trutta

text: Salmo trutta


text: University Hospital Munster

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University Hospital Munster

characteristic: Submitter Id

text: Germany

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: host health state

text: human

text: human

characteristic: isolation source

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Prevalence and genomic structure of bacteriophage phi3 in human derived livestock-associated MRSA CC398 from 2000 to 2015


characteristic: ENA-CHECKLIST

text: University Hospital Munster

text: public

text: Germany

text: restricted access

text: human

characteristic: host scientific name

characteristic: isolate

text: human

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: Prevalence and genomic structure of bacteriophage phi3 in human derived livestock-associated MRSA isolates from 2000 to 2015


text: Unilever

text: public

characteristic: description

text: metagenome

text: metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_ecafe87f-6ddc-4afe-a63a-5df5de357b31

text: FOHM

text: Sweden

text: Homo sapiens

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: strain


CD 337

characteristic: External Id

text: INRA - Oniris

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CD 337

tag: Namespace:INRA - Oniris

text: UMR 1014 Secalim / IFREMER

characteristic: collected by

characteristic: collection date

text: France

text: Pays de la Loire

characteristic: geographic location (region and locality)

text: UMR 1014 Secalim / IFREMER

characteristic: identified by

text: Shrimp

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta


TAP 175

text: INRA - Oniris

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: TAP 175

characteristic: Submitter Id

text: UMR 1014 Secalim

text: France

characteristic: geographic location (country and/or sea)

text: Pays de la Loire

text: UMR 1014 Secalim / IFREMER

text: Chicken

characteristic: isolation source

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta


BSAS1 3

characteristic: ENA-CHECKLIST

text: INRA - Oniris

text: public

text: BSAS1 3

text: UMR 1014 Secalim

text: France

text: Pays de la Loire

text: UMR 1014 Secalim / IFREMER

text: Beef slaughterhouse environment

text: Brochothrix thermosphacta

characteristic: organism

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta

characteristic: title


EBP 3070

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA - Oniris

text: public

text: EBP 3070

text: UMR 1014 Secalim / IFREMER

text: France

text: Pays de la Loire

text: UMR 1014 Secalim / IFREMER

text: Salmon

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta

text: Brochothrix thermosphacta


characteristic: External Id

text: Technische Universitat Munchen - WZW

characteristic: INSDC center name

text: public

tag: Namespace:Technische Universitat Munchen - WZW

text: The haploid basidiomycetous yeast Pseudozyma flocculosa is related to the plant pathogenic smut fungus Ustilago maydis. Many of the effector genes detected in U. maydis are conserved in P. flocculosa, but so far no mating partner has been identified for P. flocculosa, which would allow to test its potential to colonize grasses. P. flocculosa has been shown to acts as a biocontrol agent against powdery mildews.

characteristic: description

text: Anthracocystis flocculosa

text: Anthracocystis flocculosa

characteristic: strain

text: Sequencing and comparative genomics of smut fungi Pseudozyma flocculosa DAOM196992


text: Technische Universitat Munchen - WZW

characteristic: INSDC first public

text: public

text: The haploid basidiomycetous yeast Pseudozyma atarctica is related to the plant pathogen Ustilago maydis, the cause of smut disease in corn. Many of the effector genes detected in U. maydis are conserved in P. antarctica, but so far no mating partner has been identified for P. antarctica which would allow to test its potential to colonize grasses. P. antarctica is mostly used as producer of extracellular enzymes and secondary metabolites for industrial applications.

text: Moesziomyces antarcticus

text: Moesziomyces antarcticus

text: Sequencing and comparative genomics of smut fungi Pseudozyma antarctica ATCC34888


text: public

tag: Namespace:Lab of Pharmaceutical Microbiology, Ghent University, Belgium

text: ArrayExpress

characteristic: broker name

text: Protocols: 1h treated planktonic cells and 24hour treated biofilms in 96 well plate harvested by two cycles of vortexing (5min) and sonicating (5min)on ice, collected in falcon tubes 96 well plates, approximately 10^9 cells per well Starting from a fresh culture 2mM coumarin or 0.2% DMSO as control Ambion RiboPure Bacteria Kit Truseq stranded Total RNA library prep

text: wild type genotype

characteristic: genotype

text: biofilm

characteristic: growth condition

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: Lab of Pharmaceutical Microbiology, Ghent University, Belgium

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: wild type genotype

text: biofilm

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: public

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: planctonic

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


characteristic: ENA-CHECKLIST

text: NIOO-KNAW

text: public

characteristic: collection date

text: we employed a deep 16S amplicon sequencing approach to evaluate the recovery of the native soil microbiome after multiple disturbances caused by the application of organic vinasse residue, inorganic nitrogen or a combination of both during the sugarcane crop-growing season.

text: Atlantic Forest

characteristic: environment (biome)

text: Sugarcane field experiment

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Soil microbial response to organic disturbances


name: Enterobacter bugandensis EB-247 type strain

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JUSTUS LIEBIG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:JUSTUS LIEBIG UNIVERSITY

text: Tanzania

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: blood

characteristic: isolation source

text: Enterobacter bugandensis

characteristic: organism

text: Enterobacter bugandensis

characteristic: title


characteristic: ENA-CHECKLIST

text: IATA-CSIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Vaginal delivery

characteristic: description

text: human

characteristic: environment (biome)

text: breast

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Human Breast milk Mycobiota Across Specific Geographic Locations and impact of mode of delivery.

text: Homo sapiens

text: Illumina

text: Human breast milk mycobiome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IATA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: C-section delivery

text: human

text: breast

text: milk

text: China

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Human breast milk mycobiome


characteristic: ENA-CHECKLIST

text: IATA-CSIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: C-section delivery

characteristic: description

text: human

characteristic: environment (biome)

text: breast

text: milk

text: Spain

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: Human breast milk mycobiome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IATA-CSIC

text: public

text: human

text: Vaginal delivery

text: human

text: breast

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Homo sapiens

text: Illumina

text: Human breast milk mycobiome


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IATA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: C-section delivery

text: human

text: breast

text: milk

text: South Africa

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Human breast milk mycobiome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IATA-CSIC

text: public

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: Vaginal delivery

characteristic: description

text: human

characteristic: environment (biome)

text: breast

text: milk

text: South Africa

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Illumina

text: Human breast milk mycobiome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IATA-CSIC

text: public

text: human

text: C-section delivery

text: human

text: breast

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: Homo sapiens

text: Illumina

text: Human breast milk mycobiome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IATA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Vaginal delivery

text: human

text: breast

text: milk

text: Finland

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: Human breast milk mycobiome


HCC Rat-6-tail

characteristic: ENA-CHECKLIST

characteristic: External Id

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

text: public

text: HCC Rat-6-tail

tag: Namespace:CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: Submitter Id

text: Norway rat

characteristic: common name

characteristic: date of birth

characteristic: date of death

text: tail sample HCC Rat-6 from individual HCC Rat-6. This sample is a unique specimen from this individual.

characteristic: description

text: HCC Rat-6

characteristic: individual name

text: Rattus norvegicus

characteristic: organism

text: HCC Rat-6

characteristic: sample name

text: Rattus norvegicus

text: male

characteristic: sex

characteristic: strain

text: tail

characteristic: tissue type

characteristic: title

text: not treated

characteristic: treatment agent


HCC Rat-7-tail

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CANCER RESEARCH UK CAMBRIDGE INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HCC Rat-7-tail

text: Norway rat

text: tail sample HCC Rat-7 from individual HCC Rat-7. This sample is a unique specimen from this individual.

text: HCC Rat-7

text: Rattus norvegicus

text: HCC Rat-7

text: Rattus norvegicus

text: male

text: tail

text: not treated


characteristic: ENA-CHECKLIST

characteristic: External Id

text: OXFORD UNIVERSITY

text: public

tag: Namespace:OXFORD UNIVERSITY

characteristic: Submitter Id

text: Rickettsia typhi strain TM2540 isolated in 2012 from a patient in Laos

text: Rickettsia typhi

text: Rickettsia typhi


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: subject id


text: UNIVERSITY OF SZEGED

text: public

tag: Namespace:UNIVERSITY OF SZEGED

text: Department of Medical Microbiology and Immunobiology

characteristic: collecting institution

characteristic: collection date

text: Klara Megyeri

characteristic: collector name

text: Human cytomegalovirus

text: MRC-5 cells were infected by HCMV strain Towne and total RNA was isolated 24, 72 and 120 h post infection.

characteristic: description

text: Hungary

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Szeged, Csongrád

characteristic: geographic location (region and locality)

unit: centuries

characteristic: host age

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

text: Towne

characteristic: isolate

text: Human betaherpesvirus 5

characteristic: receipt date

text: other

characteristic: sample capture status

text: Human betaherpesvirus 5

text: HCMV total RNA isolate


text: heterogeneous dCas9-KRAB

characteristic: Characteristics [genotype

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Cancer Research UK Cambridge Institute

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

characteristic: common name

text: Protocols: HeLa cells were obtained from American Type Culture Collection. To generate a heterogeneous population of cells expressing dCas9-KRAB, HeLa cells were transduced with a lentiviral vector containing the pHR-SFFV-dCAS9-BFP-KRAB vector along with polybrene (5 ug/ml, Sigma), incubated for 72 hours with medium replacement after 24 hours, and sorted for the BFP-expressing cells using a BD FACSAria III cell sorter. To generate single-cell clones expressing dCas9-KRAB, BFP-sorted single cells were plated on 96-well plates and grown for two weeks until colonies were obtained. Expression of dCas9-KRAB in each colony was verified by Western blot. HeLa cells were maintained in Dulbecco's modified Eagle's medium (Sigma Aldrich, D6429) supplemented with 10% fetal bovine serum (Thermo Fisher Scientific) and cultured at 37 degrees Celsius with with 5% CO2. For RNAi and LNA, HeLa cells were transfected with Lipofectamine RNAiMax reagent (Thermo Fischer Scientific) following the manufacturer's instructions, using siRNAs (Thermo Fischer Scientifc) and LNA Gapmers (Exiqon) at a final concentration of 50 nM and 25nm, respectively. All experiments were done 48 hr after transfection. For CRISPRi, dCAS9-KRAB transduced cells were plated on a 12-well plate and infected with lentivirus containing the appropriate sgRNA vector. The virus was diluted with HeLa media (1:1 dilution) and cationic polymer polybrene was added to facilitate viral transduction (5 ug/ml, Sigma). After 24 hr incubation, supernatant was removed and fresh media was added for 48 hr before RNA collection. Samples with the same batch number were treated at roughly the same time (within the same month), while the experiment number is nested within batch and refers to cells treated on the same day. The QuantiTect Reverse Transcription Kit (QIAGEN) was used for cDNA synthesis including an additional step to eliminate genomic DNA contamination. RNA (1 ug) was extracted with the RNeasy Kit (QIAGEN) and treated with DNase I following the manufacturer's instructions. RNA quality was assessed using a Total RNA Nano chip with a 2100 Bioanalyzer instrument (Agilent). RNA-seq libraries were prepared from HeLA cells using TruSeq Stranded Total RNA Kit with Ribo-Zero Gold (Illumina, RS-122-2303). Library quality was assessed using a DNA1000 chip with a 2100 Bioanalyzer instrument (Agilent).

text: CRISPRi

characteristic: loss of function method

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title


text: wild type genotype

characteristic: Characteristics [genotype

text: Cancer Research UK Cambridge Institute

text: public

text: ArrayExpress

text: HeLa

text: human

characteristic: description

text: RNA interference

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: wild type genotype

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Cancer Research UK Cambridge Institute

text: public

text: ArrayExpress

text: HeLa

text: human

text: LNA

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: Salmonella Typhimurium

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Salmonella Typhimurium

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: subject id