characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R1V3T5

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

tag: Namespace:University of Surrey

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model R2V1T0


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V1T-1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V1T5


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model R2V1T7


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V2T0

characteristic: title


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V2T-1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model R2V2T5


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V2T7

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V3T0


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model R2V3T-1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: horse

characteristic: common name

text: terrestrial biome

characteristic: environment (biome)

text: environmental feature

text: organic material

text: United Kingdom

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V3T5

characteristic: title


characteristic: External Id

text: University of Surrey

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: horse

text: terrestrial biome

text: environmental feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: mimarks-survey

text: microbial mat/biofilm

text: Equus caballus

text: Equine gut model

text: Equus caballus

text: MiSeq

text: Equine gut model R2V3T7


Rslurry

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Surrey

characteristic: INSDC first public

text: public

text: Rslurry

text: horse

text: terrestrial biome

text: environmental feature

text: organic material

text: United Kingdom

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: microbial mat/biofilm

characteristic: microbial mat/biofilm environmental package

text: Equus caballus

characteristic: organism

text: Equine gut model

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method

text: Equine gut model Rslurry


Oak tree

characteristic: External Id

text: Anisa

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Oak tree

characteristic: Submitter Id

text: NGS data from honeydew and blossom honey DNA

characteristic: description

text: metagenome

text: metagenome

text: Entomological signatures in honey: an environmental DNA metabarcoding approach can disclose information on plant-sucking insects in agricultural and forest landscapes

characteristic: title


Apple tree

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Anisa

text: public

text: Apple tree

text: metagenome

text: metagenome


Honeydew (Piedmont)

characteristic: ENA-LAST-UPDATE

text: Anisa

characteristic: INSDC first public

text: public

text: Honeydew (Piedmont)

text: metagenome

text: metagenome


Eucalyptus (Sicily)

text: Anisa

text: public

text: Eucalyptus (Sicily)

text: metagenome

text: metagenome


Honeydew (Veneto)

text: Anisa

text: public

text: Honeydew (Veneto)

text: metagenome

text: metagenome


Honeydew (Emilia Romagna)

text: Anisa

text: public

text: Honeydew (Emilia Romagna)

text: metagenome

text: metagenome


Honeydew (Trentino Alto-Adige)

text: Anisa

text: public

text: Honeydew (Trentino Alto-Adige)

text: metagenome

text: metagenome


Polyfloral Eastern Europe

text: Anisa

text: public

text: Polyfloral Eastern Europe

text: metagenome

text: metagenome


Linden tree

text: Anisa

text: public

text: Linden tree

text: metagenome

text: metagenome


Chestnut tree

text: Anisa

text: public

text: Chestnut tree

text: metagenome

text: metagenome


Eucalyptus (Calabria)

text: Anisa

text: public

text: Eucalyptus (Calabria)

text: metagenome

text: metagenome


Polyfloral France (Corsica)

text: Anisa

text: public

text: Polyfloral France (Corsica)

text: metagenome

text: metagenome


text: PHE

text: public

text: Emm66 paper

text: Streptococcus pyogenes

text: Streptococcus pyogenes


text: public

tag: Namespace:INSTITUTE OF INFORMATION SCIENCE, Academia Sinica

text: Blood

characteristic: cell type

text: Japanese eel

characteristic: common name

text: Yellow Eel

characteristic: dev stage

text: Anguilla japonica

text: Anguilla japonica

text: Female

characteristic: sex

text: Japanese Eel Genome Assembly


text: public

tag: Namespace:Insituto de Agrobiotecnologia del Litoral

text: thale cress

text: mRNA sequencing of Col-0 mutant seedlings grown for 13 days in long-day conditions

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

characteristic: strain

text: seedling

characteristic: tissue type

text: mRNA sequencing of 13-day-old long-day-grown Col-0 seedling, Replicate 1


characteristic: External Id

text: Insituto de Agrobiotecnologia del Litoral

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of 13-day-old long-day-grown Col-0 seedling, Replicate 2


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: thale cress

text: mRNA sequencing of Col-0 seedlings grown for 10 days in long-day conditions, followed by a 3-day dark treatment

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of Col-0 with a 3-day dark treatment, Replicate 1


characteristic: ENA-CHECKLIST

text: public

text: thale cress

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of Col-0 with a 3-day dark treatment, Replicate 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of Col-0 with a 3-day dark treatment, Replicate 3


text: public

text: thale cress

characteristic: common name

text: mRNA sequencing of hyl-1-2 mutant seedlings grown for 13 days in long-day conditions

characteristic: dev stage

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of 13-day-old long-day-grown hyl-1-2 seedling, Replicate 1


text: public

text: thale cress

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of 13-day-old long-day-grown hyl-1-2 seedling, Replicate 2


text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

characteristic: strain

text: seedling

text: mRNA sequencing of 13-day-old long-day-grown hyl-1-2 seedling, Replicate 3


text: public

text: thale cress

text: mRNA sequencing of hyl-1-2 mutant seedlings grown for 10 days in long-day conditions, followed by a 3-day dark treatment

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

characteristic: tissue type

text: mRNA sequencing of hyl-1-2 with a 3-day dark treatment, Replicate 1


characteristic: External Id

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of hyl-1-2 with a 3-day dark treatment, Replicate 2


characteristic: INSDC center name

text: public

text: thale cress

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: seedling

text: mRNA sequencing of hyl-1-2 with a 3-day dark treatment, Replicate 3


E-MTAB-6621:Sample 1

text: The Children’s Hospital of Philadelphia

characteristic: INSDC last update

text: public

text: E-MTAB-6621:Sample 1

tag: Namespace:The Children’s Hospital of Philadelphia

text: ArrayExpress

characteristic: broker name

text: T follicular helper cell

characteristic: cell type

text: human

text: Protocols: Data were derived from healthy donor children's tonsils.The following cells were sorted from human tonsils: naive CD4+CD45RO- T cells (Naive) and CD4+CD45RO+CD25-CXCR5hiPD1hi follicular helper CD4+ T cells (TFH). For each of the TFH and Naive libraries, 10 million cells were harvested and fixed. The initial 3C libraries were generated following a previously published protocol (Hughes et al., Nature genetics, 2014). The DNA was digested using DpnII, then re-ligated together using T4 DNA ligase, and finally isolated by phenol/chloroform extraction. The 3C libraries were sonicated to an average size of 300bp. Agilent SureSelect library capture protocol was then applied with capture probes targeting both ends of DpnII restriction fragments that overlap promoters of protein-coding, noncoding, antisense, snRNA, miRNA, snoRNA and lincRNA transcripts, totaling 36,691 RNA baited fragments. The bait list is provided in the file baits_1frag.bed.

text: juvenile stage

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tonsil

characteristic: organism part

characteristic: phenotype

text: Homo sapiens

text: Sample 1


E-MTAB-6621:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: The Children’s Hospital of Philadelphia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6621:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: T follicular helper cell

text: human

characteristic: description

text: juvenile stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-6621:Sample 3

characteristic: External Id

text: The Children’s Hospital of Philadelphia

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6621:Sample 3

text: ArrayExpress

text: T follicular helper cell

text: human

characteristic: common name

text: juvenile stage

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 3


E-MTAB-6621:Sample 4

text: The Children’s Hospital of Philadelphia

characteristic: INSDC last update

text: public

text: E-MTAB-6621:Sample 4

text: ArrayExpress

characteristic: broker name

text: CD4-positive helper T cell

characteristic: cell type

text: human

text: juvenile stage

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 4


E-MTAB-6621:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The Children’s Hospital of Philadelphia

text: public

text: E-MTAB-6621:Sample 5

text: ArrayExpress

text: CD4-positive helper T cell

text: human

text: juvenile stage

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tonsil

characteristic: organism part

characteristic: phenotype

text: Homo sapiens

text: Sample 5


E-MTAB-6621:Sample 6

characteristic: ENA-LAST-UPDATE

text: The Children’s Hospital of Philadelphia

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6621:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: CD4-positive helper T cell

text: human

characteristic: description

text: juvenile stage

text: normal

text: Homo sapiens

text: Homo sapiens

text: tonsil

text: Homo sapiens

text: Sample 6


characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: ap in u/l

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

text: Chronic recurrent multifocal osteomyelitis (CRMO) is a rare autoinflammatory bone disease for which a lack of bacterial involvement is a key diagnostic feature to distinguish it from other symptomatically related diseases. However, the growing evidence suggesting an involvement of the host-associated microbiota in rheumatic disorders together with the now wide accessibility of modern metagenomic methods warrant a closer examination of CRMO. In this study, we show through bacterial 16S rRNA gene profiling that numerous features of the oral- and fecal microbial communities differentiate children with and without CRMO. Notably, communities in diseased children are characterized by a lack of potential probiotic bacteria in the fecal community and an overabundance of known pathobionts in the oral microbial communities. Of special interest is the HACEK group, a set of commonly known oral pathogens that are implicated in the development of several acute and chronic diseases such as osteitis and rheumatoid arthritis. Furthermore, we observe that gut bacterial communities appear to reflect an altered host physiology more strongly than the oral community in the diseased children, which could suggest an oral origin followed by propagation and/or responses beyond the oral cavity. Bacterial communities may therefore have direct- and/or indirect effects on the emergence and development of a pediatric disease formally considered to be non-bacterial.

text: medicated

characteristic: drug usage

text: area of developed space with high usage intensity

characteristic: environment (biome)

characteristic: environment (feature)

text: feces

characteristic: environment (material)

characteristic: eosinophile in %

characteristic: erythrocytes /pl

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: hb in g/dl

characteristic: hkt in %

unit: year

characteristic: host age

text: feces

characteristic: host body product

text: colon

characteristic: host body site

characteristic: host disease status

characteristic: host phenotype

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

characteristic: ldh in u/l

characteristic: lymphos in %

characteristic: mch in pg

characteristic: mchc in g/dl

characteristic: mcv in fl

characteristic: monozyten in %

characteristic: neutrophile in %

text: PMID: 27053239

characteristic: nucleic acid amplification

text: PSP Spin Stool DNA Kit

characteristic: nucleic acid extraction

text: Homo sapiens

text: PMID: 27053239

characteristic: pcr conditions

characteristic: pcr primers

text: CRMO

characteristic: project name

text: collection in Sarstedt feces collection tube

characteristic: sample collection device or method

text: freezing

characteristic: sample material processing

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: 16S rRNA

text: Analysis of the fecal and oral microbiota in chronic recurrent multifocal osteomyelitis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: ap in u/l

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

characteristic: description

text: medicated

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

characteristic: environment (material)

characteristic: eosinophile in %

characteristic: erythrocytes /pl

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: hb in g/dl

characteristic: hkt in %

characteristic: host age

text: saliva

characteristic: host body product

text: oral cavity

characteristic: host body site

text: chronic recurrent multifocal osteomyelitis

characteristic: host disease status

characteristic: host phenotype

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: PMID: 27053239

text: PSP Saliva Gene DNA Kit

text: Homo sapiens

characteristic: organism

text: PMID: 27053239

text: CRMO

text: collection in 1.5 ml Eppendorf tube

text: freezing

text: Homo sapiens

text: Illumina

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

characteristic: description

text: medicated

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

text: feces

text: colon

text: female

text: human-associated

text: metagenome

characteristic: investigation type

characteristic: ldh in u/l

characteristic: lymphos in %

characteristic: mch in pg

characteristic: mchc in g/dl

characteristic: mcv in fl

characteristic: monozyten in %

characteristic: neutrophile in %

text: PMID: 27053239

characteristic: nucleic acid amplification

text: PSP Spin Stool DNA Kit

characteristic: nucleic acid extraction

text: Homo sapiens

text: PMID: 27053239

characteristic: pcr conditions

characteristic: pcr primers

text: CRMO

characteristic: project name

characteristic: sample collection device or method

text: freezing

characteristic: sample material processing

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

characteristic: description

text: medicated

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

characteristic: environment (material)

characteristic: eosinophile in %

characteristic: erythrocytes /pl

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: hb in g/dl

characteristic: hkt in %

characteristic: host age

text: saliva

characteristic: host body product

text: oral cavity

characteristic: host body site

characteristic: host disease status

characteristic: host phenotype

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: PMID: 27053239

text: PSP Saliva Gene DNA Kit

text: Homo sapiens

characteristic: organism

text: PMID: 27053239

text: CRMO

text: collection in 1.5 ml Eppendorf tube

text: freezing

text: Homo sapiens

text: Illumina

text: 16S rRNA


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text: PMID: 27053239

characteristic: nucleic acid amplification

text: PSP Spin Stool DNA Kit

characteristic: nucleic acid extraction

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characteristic: pcr conditions

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text: CRMO

characteristic: project name

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characteristic: ENA-CHECKLIST

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characteristic: calzium in mmol/l

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characteristic: geographic location (country and/or sea)

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text: PMID: 27053239

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characteristic: lymphos in %

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characteristic: investigation type

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

characteristic: description

text: no

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

characteristic: environment (material)

characteristic: eosinophile in %

characteristic: erythrocytes /pl

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: hb in g/dl

characteristic: hkt in %

characteristic: host age

text: saliva

text: oral cavity

text: male

text: human-associated

text: metagenome

characteristic: mcv in fl

text: PMID: 27053239

characteristic: nucleic acid amplification

text: PSP Saliva Gene DNA Kit

characteristic: nucleic acid extraction

text: Homo sapiens

text: PMID: 27053239

characteristic: pcr conditions

characteristic: pcr primers

text: CRMO

characteristic: project name

text: collection in 1.5 ml Eppendorf tube

characteristic: sample collection device or method

text: freezing

characteristic: sample material processing

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

characteristic: description

characteristic: environment (biome)

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Germany

text: feces

characteristic: host body product

text: colon

characteristic: host body site

text: healthy

characteristic: host disease status

text: healthy

characteristic: host phenotype

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: PMID: 27053239

text: PSP Spin Stool DNA Kit

text: Homo sapiens

characteristic: organism

text: PMID: 27053239

text: CRMO

text: freezing

text: Homo sapiens

text: Illumina

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: saliva

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: saliva

text: oral cavity

text: healthy

text: healthy

text: female

text: human-associated

text: metagenome

text: PMID: 27053239

characteristic: nucleic acid amplification

text: PSP Saliva Gene DNA Kit

characteristic: nucleic acid extraction

text: Homo sapiens

text: PMID: 27053239

characteristic: pcr conditions

characteristic: pcr primers

text: CRMO

characteristic: project name

text: collection in 1.5 ml Eppendorf tube

characteristic: sample collection device or method

text: freezing

characteristic: sample material processing

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: basophile in %

characteristic: calzium in mmol/l

text: human

characteristic: crp in mg/l

characteristic: description

text: medicated

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: feces

characteristic: environment (material)

characteristic: eosinophile in %

characteristic: erythrocytes /pl

text: Germany

characteristic: hb in g/dl

characteristic: hkt in %

text: feces

characteristic: host body product

text: colon

characteristic: host body site

characteristic: host disease status

characteristic: host phenotype

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

characteristic: lymphos in %

characteristic: mch in pg

characteristic: mchc in g/dl

characteristic: mcv in fl

characteristic: monozyten in %

characteristic: neutrophile in %

text: PMID: 27053239

text: PSP Spin Stool DNA Kit

text: Homo sapiens

characteristic: organism

text: PMID: 27053239

text: CRMO

text: freezing

text: Homo sapiens

text: Illumina

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

characteristic: description

text: medicated

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

characteristic: environment (material)

characteristic: eosinophile in %

characteristic: erythrocytes /pl

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: hb in g/dl

characteristic: hkt in %

characteristic: host age

text: saliva

characteristic: host body product

text: oral cavity

text: male

text: human-associated

text: metagenome

text: PMID: 27053239

characteristic: nucleic acid amplification

text: PSP Saliva Gene DNA Kit

characteristic: nucleic acid extraction

text: Homo sapiens

text: PMID: 27053239

characteristic: pcr conditions

characteristic: pcr primers

text: CRMO

characteristic: project name

text: collection in 1.5 ml Eppendorf tube

characteristic: sample collection device or method

text: freezing

characteristic: sample material processing

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MPIEVB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: basophile in %

characteristic: calzium in mmol/l

characteristic: collection date

text: human

characteristic: common name

characteristic: crp in mg/l

characteristic: description

text: medicated

characteristic: drug usage

characteristic: environment (biome)

characteristic: environment (feature)

text: saliva

characteristic: environment (material)

characteristic: eosinophile in %

text: Germany

text: saliva

text: oral cavity

characteristic: host body site

characteristic: host disease status

characteristic: host phenotype

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

characteristic: ldh in u/l

characteristic: lymphos in %

characteristic: mch in pg

characteristic: mchc in g/dl

characteristic: mcv in fl

characteristic: monozyten in %

characteristic: neutrophile in %

text: PMID: 27053239

text: PSP Saliva Gene DNA Kit

text: Homo sapiens

characteristic: organism

text: PMID: 27053239

text: CRMO

text: collection in 1.5 ml Eppendorf tube

text: freezing

text: Homo sapiens

text: Illumina

text: 16S rRNA

characteristic: target gene


Alsacienne

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Alsacienne

characteristic: Submitter Id

text: chicken

characteristic: common name

text: Genome sequencing of one female of Alsacienne chicken breed (Gallus gallus domesticus). The library and the sequencing were made at the Plateforme de Séquençage Haut Débit I2BC (Gif-sur-Yvette 91198 France). A paired Miseq Illumina sequencing of 600-bp fragments was done with a coverage of about 5X.

characteristic: description

text: Gallus gallus

text: Gallus gallus

text: Miseq Illumina paired-sequencing of 600-bp fragments library from one female of the Alsacienne chicken breed

characteristic: title


Auraucana

text: INRA

text: public

text: Auraucana

text: chicken

text: Genome sequencing of one female of Auraucana chicken breed (Gallus gallus domesticus). The library and the sequencing were made at the Plateforme de Séquençage Haut Débit I2BC (Gif-sur-Yvette 91198 France). A paired Miseq Illumina sequencing of 600-bp fragments was done with a coverage of about 5X.

text: Gallus gallus

text: Gallus gallus

text: Miseq Illumina paired-sequencing of 600-bp fragments library from one female of the Auraucana chicken breed


Grey jungle fowl

text: INRA

text: public

text: Grey jungle fowl

text: gray junglefowl

text: Genome sequencing of one female of gray jungle fowl species (gallus sonneratii). The library and the sequencing were made at the Plateforme de Séquençage Haut Débit I2BC (Gif-sur-Yvette 91198 France). A paired Miseq Illumina sequencing of 600-bp fragments was done with a coverage of about 5X.

text: Gallus sonneratii

text: Gallus sonneratii

text: Miseq Illumina paired-sequencing of 600-bp fragments library from one female of the gray jungle fowl species


Red jungle fowl

text: INRA

text: public

text: Red jungle fowl

text: Genome sequencing of one female of the Red jungle fowl species(Gallus gallus bankiva). The library and the sequencing were made at the Plateforme de Séquençage Haut Débit I2BC (Gif-sur-Yvette 91198 France). A paired Miseq Illumina sequencing of 600-bp fragments was done with a coverage of about 5X.

text: Gallus gallus bankiva

text: Gallus gallus bankiva

text: Miseq Illumina paired-sequencing of 600-bp fragments library from one female of the Red jungle fowl species


White leghorn

text: INRA

text: public

text: White leghorn

text: chicken

text: Genome sequencing of one female ofthe white leghorn line(Gallus gallus domesticus). The library and the sequencing were made at the Plateforme de Séquençage Haut Débit I2BC (Gif-sur-Yvette 91198 France). A paired Miseq Illumina sequencing of 600-bp fragments was done with a coverage of about 5X.

text: Gallus gallus

text: Gallus gallus

text: Miseq Illumina paired-sequencing of 600-bp fragments library from one female of the white leghorn line


text: Hikmet Budak

text: public

tag: Namespace:Hikmet Budak

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic1A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic1B chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic2A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic2B chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic3A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic3B chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic4A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic4B chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic5A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic5B chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic6A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic6B chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic7A chromosome assembly


text: Hikmet Budak

text: public

text: Triticum dicoccoides

text: Triticum dicoccoides

text: Tdic7B chromosome assembly


text: public

tag: Namespace:Chengdu research base of giant panda breeding

characteristic: collection date

text: feces

text: panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: The stool of giant panda Heqi


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Chengdu research base of giant panda breeding

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: feces

text: panda

text: gut

text: feces

text: China

text: host-associated

text: mimarks-survey

text: metagenome

characteristic: organism

text: metagenome

text: pyrosequencing

text: The stool of giant panda Heqi


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: feces

characteristic: description

text: panda

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: China

text: host-associated

text: mimarks-survey

text: metagenome

text: metagenome

text: pyrosequencing

text: The stool of giant panda Suyun

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: feces

text: panda

text: gut

text: feces

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: The stool of giant panda Junjun


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: feces

text: panda

text: gut

text: feces

text: China

text: host-associated

text: mimarks-survey

text: metagenome

characteristic: organism

text: metagenome

text: pyrosequencing

text: The stool of giant panda Zhenzhen