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characteristic: country

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text: Yes

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text: Stool

characteristic: isolation source host associated

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CIP 103579T1

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text: Enterococcus faecium

text: Enterococcus faecium


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characteristic: Submitter Id

text: not provided

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text: Germany, , Tübingen

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text: Enterococcus faecium

text: Enterococcus faecium


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text: INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: public

tag: Namespace:INSTITUT DE GENETIQUE ET MICROBIOLOGIE

text: HW12 phage DNA recovered from infection

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characteristic: title


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text: UNIVERSITY OF COLOGNE

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text: public

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text: Yes

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text: Yes

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text: UNIVERSITY OF COLOGNE

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characteristic: SRA accession

text: not provided

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text: Yes

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text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

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text: UNIVERSITY OF COLOGNE

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text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: KI-BN

text: public

text: Liver_NuExt__Bound__ligand-lig147__index-10__cycle-1

text: synthetic construct

text: synthetic construct


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text: Liver_NuExt__Bound__ligand-lig147__index-19__cycle-2

text: synthetic construct

text: synthetic construct


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text: Liver_NuExt__Unbound__ligand-lig147__index-33__cycle-2

text: synthetic construct

text: synthetic construct


text: UNIVERSITY OF COLOGNE

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text: not provided

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characteristic: country

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text: Yes

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text: UNIVERSITY OF COLOGNE

text: public

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text: Homo sapiens

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status: KILLED

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_3f19541f-3331-4613-bc7a-a669c132e12b

tag: Namespace:Public Health Agency of Sweden

text: FOHM

text: Sweden

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human

characteristic: strain


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: Marine sediment ciliate Kentrophoros sp. DK and associated bacteria, sample DK47. Single ciliate cell fixed for DNA/RNA sequencing. Corresponds to JGI GOLD Biosample ID Gb0147648.

characteristic: description

text: marine neritic benthic zone biome

characteristic: environment (biome)

text: bay

characteristic: environment (feature)

text: shallow marine sediment

characteristic: environment (material)

text: Denmark

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Nivaa Bay

characteristic: geographic location (region and locality)

text: Kentrophoros sp. DK

characteristic: host common name

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: ciliate metagenome

text: Metagenomics of Kentrophoros ciliate-bacteria symbiosis

characteristic: project name

text: decantation after stirring with seawater

characteristic: sample collection device or method

text: fixed in RNAlater

characteristic: sample material processing

text: ciliate metagenome

text: Illumina

characteristic: sequencing method

text: Kentrophoros sp. DK sample DK47


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Marine sediment ciliate Kentrophoros sp. DK and associated bacteria, sample DK161. Single ciliate cell fixed for DNA/RNA sequencing. Corresponds to JGI GOLD Biosample ID Gb0147649.

characteristic: description

text: marine neritic benthic zone biome

text: bay

text: shallow marine sediment

text: Denmark

text: Nivaa Bay

text: Kentrophoros sp. DK

text: host-associated

text: metagenome

text: ciliate metagenome

characteristic: organism

text: fixed in RNAlater

text: ciliate metagenome

text: Illumina

text: Kentrophoros sp. DK sample DK161

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO271, Tübingen

characteristic: country

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text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


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characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

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text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO281, Tübingen

text: Homo sapiens

text: Yes

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text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

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text: public

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text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

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text: not provided

text: Germany, CO289, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Germany, CO290, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: DPSQ

text: public

text: zebrafish

characteristic: common name

text: Het uninj rep1

characteristic: description

text: Danio rerio

text: Danio rerio

text: Gfi1aa and/or Gfi1b-depleted primitive red blood cells in zebrafish embryos


text: DPSQ

text: public

text: zebrafish

text: Het uninj rep2

text: Danio rerio

characteristic: organism

text: Danio rerio

characteristic: title


text: DPSQ

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text: zebrafish

text: Het uninj rep3

text: Danio rerio

text: Danio rerio


text: DPSQ

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text: zebrafish

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text: Danio rerio


text: DPSQ

text: public

text: zebrafish

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text: Danio rerio

text: Danio rerio


text: DPSQ

text: public

text: zebrafish

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text: Danio rerio


text: DPSQ

text: public

text: zebrafish

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text: Danio rerio


text: DPSQ

text: public

text: zebrafish

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text: Danio rerio


text: DPSQ

text: public

text: zebrafish

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text: Danio rerio

text: Danio rerio


text: DPSQ

text: public

text: zebrafish

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text: Danio rerio

text: Danio rerio


text: DPSQ

text: public

text: zebrafish

text: Hom MO rep2

text: Danio rerio

text: Danio rerio


text: DPSQ

text: public

text: zebrafish

text: Hom MO rep3

text: Danio rerio

text: Danio rerio


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO293, Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, , Tübingen

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO301, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: Germany, CO310, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Germany, CO322, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO333, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO342, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO353, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_f04c80cc-a834-43b7-9563-cc46bbae32bd

text: FOHM

text: Sweden

characteristic: country

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human

characteristic: strain


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO359, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co38, Tübingen

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO4, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: Public Health Agency of Sweden

characteristic: INSDC center name

text: killed

text: sam_FOHMtest_b5ad9a73-22de-4b34-b2fd-72a09dc46f05

text: FOHM

text: Sweden

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human


text: Public Health Agency of Sweden

characteristic: INSDC first public

characteristic: INSDC last update

text: killed

text: sam_FOHMtest_0fcf17d6-e918-4990-8188-c887905c510b

text: FOHM

text: Sweden

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human


text: Public Health Agency of Sweden

text: killed

characteristic: INSDC status

characteristic: SRA accession

text: sam_FOHMtest_b324e0c0-4bb6-425a-a446-11df72d620d5

text: FOHM

text: Sweden

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

text: Germany, CO403, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_ff2b11b9-11d3-4ebe-9a60-7b0c92ed38b0

text: FOHM

text: Sweden

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO404, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO410, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO418-1, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:Center for Pathogen Evolution, University of Cambridge

text: D

characteristic: genotype

text: Kazakhstan

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Ancient DNA, 14C age (standard deviation): 1641 (33)

characteristic: note

text: Hepatitis B virus

text: Hepatitis B virus

text: DA27 ancient HBV


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Pathogen Evolution, University of Cambridge

characteristic: INSDC center name

text: public

text: D

text: Kazakhstan

text: Homo sapiens

text: Ancient DNA, 14C age (standard deviation): 849 (25)

text: Hepatitis B virus

text: Hepatitis B virus

text: DA29 ancient HBV


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: B

text: Mongolia

text: Homo sapiens

text: Petrous bone

characteristic: isolation source

text: Ancient DNA, 14C age (standard deviation): 2083 (27)

text: Hepatitis B virus

text: Hepatitis B virus

text: DA45 ancient HBV


text: public

characteristic: Submitter Id

text: D

text: Kyrgyzstan

text: Homo sapiens

text: Ancient DNA, 14C age (standard deviation): 2220 (37)

text: Hepatitis B virus

characteristic: organism

text: Hepatitis B virus

text: DA51 ancient HBV

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: A

characteristic: genotype

text: Slovakia

text: Homo sapiens

text: Ancient DNA, age estimate: 1500 BP

text: Hepatitis B virus

text: Hepatitis B virus

text: DA119 ancient HBV


text: public

text: A

text: Hungary

characteristic: geographic location (country and/or sea)

text: Homo sapiens

characteristic: host scientific name

text: Ancient DNA, 14C age (standard deviation): 2479 (35)

text: Hepatitis B virus

text: Hepatitis B virus

text: DA195 ancient HBV


text: public

text: D

text: Kazakhstan

text: Homo sapiens

characteristic: isolate

text: Ancient DNA, age estimate: 1200-1000 BP

characteristic: note

text: Hepatitis B virus

text: Hepatitis B virus

text: DA222 ancient HBV


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Poland

text: Homo sapiens

text: Tooth

text: Ancient DNA, 14C age (standard deviation): 3522 (24)

text: Hepatitis B virus

text: Hepatitis B virus

text: RISE154 ancient HBV


characteristic: External Id

characteristic: INSDC center name

text: public

text: Hungary

text: Homo sapiens

text: Bone

text: Ancient DNA, 14C age (standard deviation): 3631 (29)

text: Hepatitis B virus

text: Hepatitis B virus

text: RISE254 ancient HBV


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: A

text: Russia

text: Homo sapiens

text: Tooth

text: Ancient DNA, 14C age (standard deviation): 3758 (34)

text: Hepatitis B virus

text: Hepatitis B virus

text: RISE386 ancient HBV


text: public

characteristic: INSDC status

characteristic: SRA accession

text: A

text: Russia

text: Homo sapiens

text: Tooth

text: Ancient DNA, 14C age (standard deviation): 3822 (33)

text: Hepatitis B virus

text: Hepatitis B virus

text: RISE387 ancient HBV


text: public

characteristic: Submitter Id

text: Germany

text: Homo sapiens

text: Tooth

characteristic: isolation source

text: Ancient DNA, 14C age (standard deviation): 3955 (35)

text: Hepatitis B virus

text: Hepatitis B virus

text: RISE563 ancient HBV


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, , Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, co459, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co45_HQ, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Germany, CO471, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Germany, CO472, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Germany, CO483, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO488, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIBE-IG

text: public

text: domestic cat

characteristic: common name

text: unknown/stray cat female

characteristic: description

text: Felis catus

text: Felis catus

text: unknown/stray cat


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO49, Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO493, Tübingen

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO495, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Germany, CO51, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: Germany, CO52, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Germany, CO525, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO53, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO533, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO536, Tübingen

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO537, Tübingen

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO539, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO55, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO556, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO566, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO57, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO582, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

text: public

text: not provided

text: Germany, CO584, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC first public

text: public

text: not provided

text: Germany, , Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

text: not provided

text: Germany, CO591, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: INSDC status

text: not provided

text: Germany, CO593, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

text: not provided

text: Germany, CO60, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

text: Germany, CO605, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO614, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co626, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co627, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_f91cb7d5-1554-497d-a654-1f427b74e729

text: FOHM

text: Sweden

text: yes

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human

characteristic: strain


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co629, Tübingen

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co63, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO641, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, , Tübingen

text: Homo sapiens

text: Yes

text: Blood

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Germany, Co656, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Germany, CO658, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Germany, CO66, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, Co667, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO685, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co690, Tübingen

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co692, Tübingen

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co709, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO716, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co726, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO73, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, Co736, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: Gut bacterium

characteristic: ArrayExpress-PHENOTYPE

text: Enterococcus faecalis

characteristic: ArrayExpress-SPECIES

characteristic: External Id

text: SC

text: public

text: Enterococcus faecalis

characteristic: common name

text: Enterococcus faecalis

text: Gut bacterium

characteristic: phenotype

text: Enterococcus faecalis

characteristic: subject id


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Enterococcus faecalis

text: United Kingdom

text: carriage

characteristic: host status

text: faecal

characteristic: isolation source

text: Enterococcus faecalis

text: Enterococcus faecalis

text: human

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: collection date

text: Escherichia coli

text: United Kingdom

characteristic: country

text: carriage

text: faecal

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: human

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Enterococcus faecium

characteristic: common name

text: United Kingdom

text: carriage

text: faecal

text: Enterococcus faecium

text: Enterococcus faecium

text: human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Klebsiella pneumoniae

text: United Kingdom

text: carriage

text: faecal

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: human


text: SC

text: public

characteristic: anonymized name

text: Klebsiella oxytoca

text: United Kingdom

text: carriage

characteristic: host status

text: faecal

characteristic: isolation source

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: human

characteristic: specific host


text: Gut bacterium

characteristic: ArrayExpress-PHENOTYPE

text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Gut bacterium

characteristic: phenotype

text: Klebsiella pneumoniae

characteristic: subject id


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Enterococcus durans

text: United Kingdom

characteristic: country

text: carriage

text: faecal

text: Enterococcus durans

characteristic: organism

text: Enterococcus durans

text: human

characteristic: strain

characteristic: title


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Enterococcus casseliflavus

characteristic: common name

text: United Kingdom

text: carriage

characteristic: host status

text: faecal

characteristic: isolation source

text: Enterococcus casseliflavus

text: Enterococcus casseliflavus

text: human


text: Gut bacterium

characteristic: ArrayExpress-PHENOTYPE

text: Klebsiella oxytoca

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Gut bacterium

characteristic: phenotype

text: Klebsiella oxytoca

characteristic: subject id


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Klebsiella aerogenes

text: United Kingdom

characteristic: country

text: carriage

text: faecal

text: Klebsiella aerogenes

characteristic: organism

text: Klebsiella aerogenes

text: human

characteristic: specific host

characteristic: strain


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: Citrobacter freundii

characteristic: common name

text: United Kingdom

text: carriage

characteristic: host status

text: faecal

text: Citrobacter freundii

text: Citrobacter freundii

text: human

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO742, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collection date

text: Germany, CO746, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


text: Salmonella enterica subsp. enterica

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

characteristic: subject id

text: Salmonella enterica subsp. enterica


text: Propioniferax innocua

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Propioniferax innocua

characteristic: common name

text: Propioniferax innocua

text: Propioniferax innocua

text: Propioniferax innocua

characteristic: title


text: Achromobacter piechaudii

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Achromobacter piechaudii

text: Achromobacter piechaudii

text: Achromobacter piechaudii

text: Achromobacter piechaudii


text: Oerskovia turbata

characteristic: External Id

text: SC

text: public

text: Oerskovia turbata

text: Oerskovia turbata

text: Oerskovia turbata

text: Oerskovia turbata


text: Legionella rubrilucens

text: SC

characteristic: INSDC center name

text: public

text: Legionella rubrilucens

text: Legionella rubrilucens

text: Legionella rubrilucens

text: Legionella rubrilucens


text: Veillonella ratti

text: SC

characteristic: INSDC first public

text: public

text: Veillonella ratti

text: Veillonella ratti

text: Veillonella ratti

text: Veillonella ratti


text: Chryseobacterium bernardetii

text: SC

text: public

text: Chryseobacterium bernardetii

text: Chryseobacterium bernardetii

text: Chryseobacterium bernardetii

text: Chryseobacterium bernardetii


text: Propionibacterium freudenreichii

text: SC

text: public

text: Propionibacterium freudenreichii

text: Propionibacterium freudenreichii

text: Propionibacterium freudenreichii

text: Propionibacterium freudenreichii


text: Pragia fontium

text: SC

text: public

text: Pragia fontium

text: Pragia fontium

text: Pragia fontium

text: Pragia fontium


text: Pseudopropionibacterium propionicum

text: SC

text: public

text: Pseudopropionibacterium propionicum

text: Pseudopropionibacterium propionicum

text: Pseudopropionibacterium propionicum

text: Pseudopropionibacterium propionicum


text: Prevotella corporis

text: SC

text: public

text: Prevotella corporis

text: Prevotella corporis

text: Prevotella corporis

text: Prevotella corporis


text: Alcaligenes faecalis

text: SC

text: public

text: Alcaligenes faecalis

text: Alcaligenes faecalis

text: Alcaligenes faecalis

text: Alcaligenes faecalis


text: Propionibacterium microaerophilum

text: SC

text: public

text: Propionibacterium microaerophilum

text: Acidipropionibacterium microaerophilum

text: Acidipropionibacterium microaerophilum

text: Propionibacterium microaerophilum


text: Legionella fairfieldensis

text: SC

text: public

text: Legionella fairfieldensis

text: Legionella fairfieldensis

text: Legionella fairfieldensis

text: Legionella fairfieldensis


text: Propionibacterium lymphophilum

text: SC

text: public

text: Propionibacterium lymphophilum

text: Propionimicrobium lymphophilum

text: Propionimicrobium lymphophilum

text: Propionibacterium lymphophilum


text: Legionella santicrucis

text: SC

text: public

text: Legionella santicrucis

text: Legionella santicrucis

text: Legionella santicrucis

text: Legionella santicrucis


text: Bacteroides caccae

text: SC

text: public

text: Bacteroides caccae

text: Bacteroides caccae

text: Bacteroides caccae

text: Bacteroides caccae


text: Bacillus badius

text: SC

text: public

text: Bacillus badius

text: Bacillus badius

text: Bacillus badius

text: Bacillus badius


text: Listeria marthii

text: SC

text: public

text: Listeria marthii

text: Listeria marthii

text: Listeria marthii

text: Listeria marthii


text: Streptococcus constellatus subsp. viborgensis

text: SC

text: public


text: Streptococcus peroris

text: SC

text: public

text: Streptococcus peroris

text: Streptococcus peroris

text: Streptococcus peroris

text: Streptococcus peroris


text: Mycobacterium neoaurum

text: SC

text: public

text: Mycobacterium neoaurum

text: Mycobacterium neoaurum

text: Mycobacterium neoaurum

text: Mycobacterium neoaurum


text: Clostridium chauvoei

text: SC

text: public

text: Clostridium chauvoei

text: Clostridium chauvoei

text: Clostridium chauvoei

text: Clostridium chauvoei


text: Erysipelothrix rhusiopathiae

text: SC

text: public

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae

text: Erysipelothrix rhusiopathiae


text: Bacillus subtilis

text: SC

text: public

text: Bacillus subtilis

text: Bacillus subtilis

text: Bacillus subtilis

text: Bacillus subtilis


text: CIGENE

text: public

text: Atlantic cod

characteristic: description

text: Gadus morhua

text: Gadus morhua

text: Illumina HiSeq 2000 PE WGS of 104 Atlantic cod samples


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, Co747, Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: Germany, Co760, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WWRR-_3_LIB19443_LDI16786

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: Secale cereale x Triticum aestivum

characteristic: genotype

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

characteristic: source name


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TGAC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 5a27d59c3bd23600479ae611:sample:WWRR+_3_LIB19440_LDI16783

text: COPO

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

characteristic: title


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WWRR+_1_LIB19438_LDI16781

text: COPO

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WWRR-_1_LIB19441_LDI16784

text: COPO

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WWRR-_2_LIB19442_LDI16785

text: COPO

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WWRR+_2_LIB19439_LDI16782

text: COPO

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum

text: Secale cereale x Triticum aestivum


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WR-_1_LIB19435_LDI16778

text: COPO

text: Hybrid

text: hybrid

text: hybrid

text: WR-_1 Ph1 minus rep1


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WR+_1_LIB19432_LDI16775

text: COPO

text: Hybrid

text: hybrid

text: hybrid

text: WR+_1 Ph1 plus rep1


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:Rye_2_LIB19430_LDI16773

text: COPO

text: rye

characteristic: common name

text: Secale cereale

text: Secale cereale

text: Secale cereale


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:Rye_3_LIB19431_LDI16774

text: COPO

text: rye

text: Secale cereale

text: Secale cereale

text: Secale cereale


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WR-_2_LIB19436_LDI16779

text: COPO

text: Hybrid

text: hybrid

text: hybrid

text: WR-_2 Ph1 minus rep2


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WR+_2_LIB19433_LDI16776

text: COPO

text: Hybrid

text: hybrid

text: hybrid

text: WR+_2 Ph1 plus rep2


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WR+_3_LIB19434_LDI16777

text: COPO

text: Hybrid

text: hybrid

text: hybrid

text: WR+_3 Ph1 plus rep3


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:WR-_3_LIB19437_LDI16780

text: COPO

text: Hybrid

text: hybrid

text: hybrid

text: WR-_3 Ph1 minus rep3


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:CS-_4_LIB19449_LDI16792

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: CS-_4 Ph1 minus rep4


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:CS-_3_LIB19448_LDI16791

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: CS-_3 Ph1 minus rep3


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:CS-_2_LIB19447_LDI16790

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: CS-_2 Ph1 minus rep2


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:Rye_1_LIB19429_LDI16772

text: COPO

text: rye

text: Secale cereale

text: Secale cereale

text: Secale cereale


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:CS+_4_LIB19446_LDI16789

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: CS+_4 Ph1 plus rep4


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:CS+_3_LIB19445_LDI16788

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: CS+_3 Ph1 plus rep3


text: TGAC

text: public

text: 5a27d59c3bd23600479ae611:sample:CS+_2_LIB19444_LDI16787

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: Triticum aestivum

text: CS+_2 Ph1 plus rep2


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO766, Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: Germany, , Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

text: Germany, CO783, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO784, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Germany, CO795, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO803, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO804, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:Instituto de Tecnologia Quimica e Biologica Antonio Xavier

text: Staphylococcus aureus

text: Staphylococcus aureus

text: methicillin susceptible S. aureus strain 27s


text: Instituto de Tecnologia Quimica e Biologica Antonio Xavier

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Oxacillin tolerant laboratory mutant of the methicillin susceptible Staphylococcus aureus strain 27s


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO805, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO807-1, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO81, Tübingen

text: Homo sapiens

text: Yes

characteristic: host associated

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO814, Tübingen

text: Homo sapiens

text: Yes

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: gut metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: gut metagenome

characteristic: common name

text: gut metagenome

text: gut metagenome

characteristic: subject id


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: Germany, CO820, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_7c0ee723-708c-4730-a542-031e149301ca

characteristic: Submitter Id

text: FOHM

text: Sweden

text: yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: human

characteristic: strain


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

characteristic: collection date

text: Germany, CO840, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO849, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Germany, CO85, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

characteristic: SRA accession

text: not provided

text: Germany, CO860, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO863, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

text: Germany, CO864, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

text: public

text: not provided

text: Germany, CO866, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC first public

text: public

text: not provided

text: Germany, CO87, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO883, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: CIGENE

text: public

text: Atlantic cod

characteristic: common name

text: Gadus morhua

text: Gadus morhua

text: mRNA illumina paired end reads from larval stages of 1 and 7 days post hatching


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO888, Tübingen

characteristic: country

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: title


characteristic: ENA-CHECKLIST

text: KI-BN

text: public

text: MNase-ChIP__cell-HEK293__TF-HOXB13__Replicate-1

characteristic: cell line

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-ChIP__cell-HEK293__TF-HOXB13__Replicate-2

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-1

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-ChIP__cell-HEK293__TF-RFX5__Replicate-2

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-ChIP__cell-HEK293__TF-noTransfection__Replicate-1

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-ChIP__cell-HEK293__TF-noTransfection__Replicate-2

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-HEK293__Control-for-MNaseChIP__After-HOXB13-expression__Replicate-1

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-HEK293__Control-for-MNaseChIP__After-HOXB13-expression__Replicate-2

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-HEK293__Control-for-MNaseChIP__After-RFX5-expression__Replicate-1

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-HEK293__Control-for-MNaseChIP__After-RFX5-expression__Replicate-2

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-HEK293__Control-for-MNaseChIP__Before-TF-expression

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-LoVo__treatment-500mMKCl-37deg30min

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-LoVo__treatment-None__Replicate-1

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


text: KI-BN

text: public

text: MNase-seq__cell-LoVo__treatment-None__Replicate-2

text: LoVo

text: human

text: Homo sapiens

text: Homo sapiens


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO890, Tübingen

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not provided

text: Germany, CO892, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLOGNE

text: public

text: not provided

text: Germany, CO93, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium


characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: not provided

text: Germany, CO94, Tübingen

text: Homo sapiens

text: Yes

text: Stool

text: Enterococcus faecium

text: Enterococcus faecium


text: TGAC

characteristic: INSDC first public

text: public

text: 5aa944f0ad740200432e820f:sample:N_AWW_clean

unit: Zadoks or decimal code (00-99)

characteristic: age

text: COPO

characteristic: broker name

text: bread wheat

characteristic: common name

text: Triticum aestivum

text: Triticum aestivum

characteristic: source name

text: fourth leaf

characteristic: tissue

text: Triticum aestivum cv. Chinese Spring

characteristic: variety


characteristic: ENA-CHECKLIST

text: TGAC

text: public

text: 5aa944f0ad740200432e820f:sample:P_AWW_clean

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: fourth leaf

characteristic: title

text: Triticum aestivum cv. Chinese Spring


text: TGAC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 5aa944f0ad740200432e820f:sample:Q_AWW_clean

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: fourth leaf

text: Triticum aestivum cv. Chinese Spring


characteristic: ENA-FIRST-PUBLIC

text: TGAC

text: public

characteristic: SRA accession

text: 5aa944f0ad740200432e820f:sample:NN_AWW_noribo

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: roots

text: Triticum aestivum cv. Chinese Spring


characteristic: ENA-LAST-UPDATE

text: TGAC

text: public

text: 5aa944f0ad740200432e820f:sample:PP_AWW_noribo

text: COPO

text: bread wheat

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: roots

text: Triticum aestivum cv. Chinese Spring


characteristic: External Id

text: TGAC

characteristic: INSDC center name

text: public

text: 5aa944f0ad740200432e820f:sample:QQ_AWW_noribo

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: roots

text: Triticum aestivum cv. Chinese Spring


text: TGAC

characteristic: INSDC first public

text: public

text: 5aa944f0ad740200432e820f:sample:Q_BFL_noribo

characteristic: Submitter Id

text: COPO

text: bread wheat

text: Triticum aestivum

text: Triticum aestivum

text: fourth leaf

text: Triticum aestivum cv. Chinese Spring


text: UNIVERSITY OF COLOGNE

text: public

text: not provided

characteristic: collection date

text: Germany, CO96, Tübingen

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Stool

characteristic: isolation source host associated

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_b37c4899-2c57-47bf-95d0-15cf92889df3

text: FOHM

text: Sweden

text: yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: human

characteristic: strain


wild type exp R1

characteristic: INSDC last update

text: public

text: wild type exp R1

tag: Namespace:Division of Biosciences, Brunel University

text: Exponentially growing sample of MG1655 from sequencing run 1

characteristic: description

text: Escherichia coli str. K-12 substr. MG1655

text: Over-replication in an ectopic termination area in E. coli recG cells

characteristic: title


wild type stat R1

characteristic: ENA-FIRST-PUBLIC

text: Division of Biosciences, Brunel University

text: public

characteristic: INSDC status

characteristic: SRA accession

text: wild type stat R1

text: Stationary sample of MG1655 from sequencing run 1


recG R1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: recG R1

text: Exponentially growing sample of MG1655 recG from sequencing run 1

characteristic: organism


ruvABC R1

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ruvABC R1

characteristic: Submitter Id

text: Exponentially growing sample of ruvABC from sequencing run 1


ruvABC recG R1

text: public

text: ruvABC recG R1

text: Exponentially growing sample of recG ruvABC from sequencing run 1


wild type exp R2

text: public

text: wild type exp R2

text: Exponentially growing sample of MG1655 from sequencing run 2


wild type stat R2

text: public

text: wild type stat R2

text: Stationary sample of MG1655 from sequencing run 2


oriC+ oriZ+ tus R2

text: public

text: oriC+ oriZ+ tus R2

text: Exponentially growing sample of oriC+ oriZ+ tus from run 2


oriC+ oriZ+ tus recG R2

text: public

text: oriC+ oriZ+ tus recG R2


polA2 R2

text: public

text: polA2 R2

text: Exponentially growing sample of polA2 from run 2


wild type stat R7

text: public

text: wild type stat R7

text: Stationary sample of MG1655 from run 7


oriC+ oriZ+ ter4.44 ter4.56 recG R7

text: public

text: oriC+ oriZ+ ter4.44 ter4.56 recG R7


oriC+ oriZ+ ter4.44 ter4.56 tus R7

text: public

text: oriC+ oriZ+ ter4.44 ter4.56 tus R7

text: Exponentially growing sample of oriC+ oriZ+ ter4.44 ter5.67 tus from run 7


oriC+ oriZ+ R7

text: public

text: oriC+ oriZ+ R7

text: Exponentially growing sample of oriC+ oriZ+ from run 7


oriC+ oriZ+ ter4.44 ter4.56 tus recG R7

text: public

text: oriC+ oriZ+ ter4.44 ter4.56 tus recG R7

text: Exponentially growing sample of oriC+ oriZ+ ter4.44 ter5.67 tus recG from run 7


wild type stat R6

text: public

text: wild type stat R6


oriC+ oriZ+ ter4.44 ter4.56 R6

text: public

text: oriC+ oriZ+ ter4.44 ter4.56 R6

text: Exponentially growing sample of oriC+ oriZ+ ter4.44 ter5.67 from run 6


wild type exp R8

text: public

text: wild type exp R8

text: Exponentially growing sample of MG1655 from run 8


wild type stat R8

text: public

text: wild type stat R8

text: Stationary sample of MG1655 from run 8


recA R8

text: public

text: recA R8

text: Exponentially growing sample of recA from run 8


recG recA R8

text: public

text: recG recA R8

text: Exponentially growing sample of recG recA from run 8

text: Escherichia coli str. K-12 substr. MG1655


wild type exp MM R5

text: Division of Biosciences, Brunel University

text: public

text: wild type exp MM R5

text: Exponentially growing sample of MG1655 grown in MM from run 5

text: Over-replication in an ectopic termination area in E. coli recG cells


wild type stat MM R5

text: public

text: wild type stat MM R5

text: Stationary sample of MG1655 grown in MM from run 5


recG MM R5

text: public

text: recG MM R5

text: Exponentially growing sample of recG grown in MM from run 5


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: Homo sapiens

characteristic: ENA-CHECKLIST

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_360a402f-81c0-4546-824a-bae45c5406a3

text: FOHM

text: Sweden

characteristic: country

text: yes

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: human

characteristic: strain


text: WAGENINGEN UNIVERSITY

characteristic: INSDC last update

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: February 9, 2017

characteristic: collection date

text: Seawater

characteristic: isolation source

text: metagenome

text: metagenome

text: 16S rRNA gene amplicon dataset


characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UNIVERSITY

text: public

characteristic: INSDC status

text: February 2, 2017

text: Seawater

text: metagenome

text: metagenome

text: 16S rRNA gene amplicon dataset

characteristic: title


text: Plasmodium falciparum

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Malaria parasite

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

text: Plasmodium falciparum


text: Plasmodium vivax

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: malaria parasite P. vivax

characteristic: common name

text: Plasmodium vivax

text: Plasmodium vivax


text: Anopheles gambiae

characteristic: ENA-CHECKLIST

text: SC

text: public

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id


text: male

characteristic: ArrayExpress-SEX

text: Homo sapiens

text: SC

characteristic: INSDC last update

text: public

text: human

text: Male

characteristic: gender

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: INRA

text: public

text: Stephane Chaillou

characteristic: collected by

characteristic: collection date

characteristic: culture collection

text: Organic beef carpaccio

characteristic: description

text: Beef carpaccio

characteristic: isolation source

text: Leuconostoc carnosum

text: Leuconostoc carnosum

characteristic: strain

text: Food sample


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Stephane Chaillou

text: vacuum-packed beef carpaccio

text: Beef carpaccio

text: Leuconostoc carnosum

text: Leuconostoc carnosum

text: Food sample

characteristic: title


text: ZFS:0000027-ZFS:0000028 - Segmentation:20-25 somites - Segmentation:26+ somites

text: Whole embryo

text: Danio rerio

characteristic: ArrayExpress-SPECIES

text: mixed

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

text: zebrafish

characteristic: common name

text: Danio rerio

characteristic: organism

text: Danio rerio

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-LAST-UPDATE

text: Public Health Agency of Sweden

text: killed

text: sam_FOHMtest_522f993c-7dfa-44ad-a833-38ff9d9ef24f

text: FOHM

text: Sweden

text: yes

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

text: human


characteristic: External Id

text: Sus scrofa

characteristic: HOST TAXON NAME

text: UNIVERSITY OF BIRMINGHAM

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF BIRMINGHAM

text: Pasteurellaceae bacterium

text: clinical isolates

characteristic: description

text: Pasteurellaceae bacterium

text: Pasteurellaceae bacterium


E-MTAB-6605:Control 1

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6605:Control 1

tag: Namespace:Temple University Lewis Katz School of Medicine

text: ArrayExpress

characteristic: broker name

text: endothelial cell

characteristic: cell type

text: human

text: Protocols: HAECs were collected using RNAeasy kit. Human aortic endothelial cells (HAECs) (Lonza, CC2535; Walkersville, MD) were cultured in medium M199 (Hyclone laboratories, Logan, UT) supplemented with 15% fetal bovine serum (FBS; HyClone); endothelial cell growth supplement (ECGS, 50μg /mL; BD Biosciences, San Jose, CA); heparin (50μg/mL); and 1% penicillin, streptomycin, and amphotericin (PSA; Invitrogen, Carlsbad, CA). HAECs were grown on 0.2% gelatin-coated flasks, plates, or dishes and experiments were performed at passage 9. 18-hour vehicle or lysophosphatidylinositol (16:0) treatment RNA was collected using RNAeasy kit. mRNA from HAECs was purified from total RNA using poly-T oligo-attached magnetic beads. The mRNA was first fragmented randomly by addition of fragmentation buffer. Then first strand cDNA was synthesized using random hexamer primer and M-MuLV Reverse Transcriptase (RNase H-). Second strand cDNA synthesis was subsequently performed using DNA Polymerase I and RNase H. Double-stranded cDNA was purified using AMPure XP beads (Beckman Coulter, Beverly, USA). Remaining overhangs of the purified double-stranded cDNA were converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3' ends of DNA fragments, NEBNext Adaptor with hairpin loop structure was ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 150~200 bp in length, the library fragments were purified with AMPure XP system (Beckman Coulter). Finally, the final library was gotten by PCR amplification and purification of PCR products by AMPure XP beads. After library construction, diluting library to 1.5ng/ul with the preliminary quantitative result by Qubit2.0 and detecting the insert size by Agilent 2100. Q-PCR was used to accurately quantify the library effective concentration (> 2nM), in order to ensure the library quality.

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

characteristic: organism part

text: Homo sapiens

text: Control 1

characteristic: title


E-MTAB-6605:Control 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Temple University Lewis Katz School of Medicine

characteristic: INSDC last update

text: public

text: E-MTAB-6605:Control 2

characteristic: Submitter Id

text: ArrayExpress

text: endothelial cell

text: human

characteristic: common name

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: aorta

text: Homo sapiens

text: Control 2


E-MTAB-6605:Control 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6605:Control 3

text: ArrayExpress

text: endothelial cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

text: Homo sapiens

text: Control 3


E-MTAB-6605:LPI 1

characteristic: INSDC center name

text: public

text: E-MTAB-6605:LPI 1

text: ArrayExpress

text: endothelial cell

text: human

characteristic: description

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

text: Homo sapiens

text: LPI 1


E-MTAB-6605:LPI 2

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-6605:LPI 2

text: ArrayExpress

text: endothelial cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

text: Homo sapiens

text: LPI 2


E-MTAB-6605:LPI 3

text: public

characteristic: SRA accession

text: E-MTAB-6605:LPI 3

text: ArrayExpress

characteristic: broker name

text: endothelial cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

text: Homo sapiens

text: LPI 3


text: Staphylococcus aureus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: subject id


text: public

text: ArrayExpress

text: endothelial cell

characteristic: cell type

text: human

text: Protocols: HAECs were collected using RNAeasy kit. Human aortic endothelial cells (HAECs) (Lonza, CC2535; Walkersville, MD) were cultured in medium M199 (Hyclone laboratories, Logan, UT) supplemented with 15% fetal bovine serum (FBS; HyClone); endothelial cell growth supplement (ECGS, 50μg /mL; BD Biosciences, San Jose, CA); heparin (50μg/mL); and 1% penicillin, streptomycin, and amphotericin (PSA; Invitrogen, Carlsbad, CA). HAECs were grown on 0.2% gelatin-coated flasks, plates, or dishes and experiments were performed at passage 9. 18-hour vehicle or lysophosphatidylcholine (16:0) treatment RNA is extracted using RNeasy kit, then mRNA and non-coding RNAs are enriched by removing rRNA from the total RNA with kit. By using the fragmentation buffer, the mRNAs are fragmented into short fragments (about 200~500nt), then the first-strand cDNA is synthesized by random hexamer-primer using the fragments as templates, and dTTP is substituted by dUTP during the synthesis of the second strand. Short fragments are purified and resolved with elution buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters, then the second strand is degraded finally using UNG(Uracil-N-Glycosylase). After agarose gel electrophoresis, the suitable fragments are selected for the PCR amplification as templates. During the quality control steps, Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR System are used in quantification and qualification of the sample library.

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

characteristic: organism part

text: Homo sapiens

text: Control

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: endothelial cell

text: human

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: aorta

text: Homo sapiens

text: LPC


E-MTAB-6599:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6599:Sample 1

tag: Namespace:Laboratory Molecular Medicine and Genomics  University of Salerno

text: ArrayExpress

text: MIA Paca-2

characteristic: cell line

text: epithelial cell

text: human

characteristic: common name

text: Protocols: The optimized gRNA construct, targeting ANXA1, and the Cas9 expression construct, pGS-gRNA- Cas9-Neo, were obtained from GenScript (USA). The ANXA1 exon located at the third coding exon was selected for guide RNA design. The gRNA recognizes the following target sequence 5′- GATCAGCGGTGAGCCCCTA -3′. For the establishment of ANXA1 KO cell lines, pGS-gRNA-Cas9-Neo containing neomycin resistance gene (Genscript, USA) was used. MIA PaCa-2 cells were transfected using Lipofectamine 2000 Reagent (Life technologies), according to the manufacturer′s instructions (www.lifetechnologies.com). One week later, the cells were subject to selection by 700 μg/ml neomycin (Euroclone). Cell clones were obtained following the limit dilution. Single cell colonies were selected, gradually expanded and analyzed by Western blotting to pick ANXA1 KO clones. The rescue of miR-196a expression was performed by mimic transfection as following reported. Briefly, PGS, ANXA1 KO MIA PaCa-2 cells were transfected with hsa-miR196a-5p UAGGUAGUUUCAUGUUGUUGGG mimic purchased from Dharmacon and used at a final concentration of 100 nM for 24 and 48 hours. The sequences were transfected using Lipofectamine 2000 Reagent (Life technologies), according to the manufacturer’s instructions. In order to test the transfection efficiency, for each experiment with mimic we performed a control co-transfecting the sequence of our interest with Tye 563 probe 1 nM (Integrated DNA Technologies; IA, USA). After 24 and 48 hours from the transfection, images of fluorescence signal have been taken at Integrated Live Cell Workstation Leica AF-6000 LX. MIA PaCa-2, human pancreatic cancer cells, were cultured in DMEM (Lonza) containing L-Glutamine 2 mM, 10% heat-inactivated fetal bovine serum (FBS; Lonza) and 2,5% heat inactivated horse serum (HS; Lonza). The medium was supplemented with antibiotics (10000 U/ml penicillin and 10 mg/ml streptomycin; Lonza). The cell line were purchased from ATCC (Rockville, USA) and were stained at 37°C in 5% CO2 -95% air humidified atmosphere. ANXA1 KO MIA PaCa-2 cells Total RNA was extracted from PGS and ANXA1 KO MIA PaCa-2 cells using TRI Reagent® (Sigma-Aldrich). RNA concentration was assayed with a NanoDrop 2000c spectrophotometer (Thermo Fisher Scientific) and its quality assessed with the Agilent 4200 TapeStation with Agilent RNA ScreenTape Assay (Agilent Technologies). TruSeq smallRNA library Prep Kit (Illumina)

text: carcinoma

characteristic: disease

text: PGS-gRNA-ANXA1- Cas9-Neo; hsa-miR196a-5p

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: CRISPR/Cas9 mediated Annexin A1 knockout; miR-196a overexpression

characteristic: phenotype

text: Homo sapiens

text: Sample 1


E-MTAB-6599:Sample 2

text: Laboratory Molecular Medicine and Genomics University of Salerno

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6599:Sample 2

text: ArrayExpress

characteristic: broker name

text: MIA Paca-2

text: epithelial cell

text: human

characteristic: description

text: carcinoma

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: Homo sapiens

text: Sample 2


E-MTAB-6599:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6599:Sample 3

text: ArrayExpress

text: MIA Paca-2

text: epithelial cell

characteristic: cell type

text: human

text: carcinoma

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-6599:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: E-MTAB-6599:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: MIA Paca-2

text: epithelial cell

text: human

text: Protocols: The optimized gRNA construct, targeting ANXA1, and the Cas9 expression construct, pGS-gRNA- Cas9-Neo, were obtained from GenScript (USA). The ANXA1 exon located at the third coding exon was selected for guide RNA design. The gRNA recognizes the following target sequence 5′- GATCAGCGGTGAGCCCCTA -3′. For the establishment of ANXA1 KO cell lines, pGS-gRNA-Cas9-Neo containing neomycin resistance gene (Genscript, USA) was used. MIA PaCa-2 cells were transfected using Lipofectamine 2000 Reagent (Life technologies), according to the manufacturer′s instructions (www.lifetechnologies.com). One week later, the cells were subject to selection by 700 μg/ml neomycin (Euroclone). Cell clones were obtained following the limit dilution. Single cell colonies were selected, gradually expanded and analyzed by Western blotting to pick ANXA1 KO clones. The rescue of miR-196a expression was performed by mimic transfection as following reported. Briefly, PGS, ANXA1 KO MIA PaCa-2 cells were transfected with hsa-miR196a-5p UAGGUAGUUUCAUGUUGUUGGG mimic purchased from Dharmacon and used at a final concentration of 100 nM for 24 and 48 hours. The sequences were transfected using Lipofectamine 2000 Reagent (Life technologies), according to the manufacturer’s instructions. In order to test the transfection efficiency, for each experiment with mimic we performed a control co-transfecting the sequence of our interest with Tye 563 probe 1 nM (Integrated DNA Technologies; IA, USA). After 24 and 48 hours from the transfection, images of fluorescence signal have been taken at Integrated Live Cell Workstation Leica AF-6000 LX. MIA PaCa-2, human pancreatic cancer cells, were cultured in DMEM (Lonza) containing L-Glutamine 2 mM, 10% heat-inactivated fetal bovine serum (FBS; Lonza) and 2,5% heat inactivated horse serum (HS; Lonza). The medium was supplemented with antibiotics (10000 U/ml penicillin and 10 mg/ml streptomycin; Lonza). The cell line were purchased from ATCC (Rockville, USA) and were stained at 37°C in 5% CO2 -95% air humidified atmosphere. PGS MIA PaCa-2 cells Total RNA was extracted from PGS and ANXA1 KO MIA PaCa-2 cells using TRI Reagent® (Sigma-Aldrich). RNA concentration was assayed with a NanoDrop 2000c spectrophotometer (Thermo Fisher Scientific) and its quality assessed with the Agilent 4200 TapeStation with Agilent RNA ScreenTape Assay (Agilent Technologies). TruSeq smallRNA library Prep Kit (Illumina)

text: carcinoma

text: pGS-gRNA- Cas9-Neo; hsa-miR196a-5p

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: miR-196a overexpression

text: Homo sapiens

text: Sample 4


E-MTAB-6599:Sample 5

text: public

text: E-MTAB-6599:Sample 5

text: ArrayExpress

text: MIA Paca-2

characteristic: cell line

text: epithelial cell

text: human

characteristic: common name

text: carcinoma

characteristic: disease

text: pGS-gRNA- Cas9-Neo; hsa-miR196a-5p

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: miR-196a overexpression

characteristic: phenotype

text: Homo sapiens

text: Sample 5


E-MTAB-6599:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6599:Sample 6

text: ArrayExpress

characteristic: broker name

text: MIA Paca-2

text: epithelial cell

text: human

text: carcinoma

text: pGS-gRNA- Cas9-Neo; hsa-miR196a-5p

text: Homo sapiens

text: Homo sapiens

text: pancreas

text: miR-196a overexpression

text: Homo sapiens

text: Sample 6


C45 chromosome

characteristic: ENA-CHECKLIST

text: CHU Clermont-ferrand

text: public

text: C45 chromosome

tag: Namespace:CHU Clermont-ferrand

characteristic: collection date

text: C45 Enterobacter cloacae complex C45 ST873 isolated in France

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: hospital

characteristic: isolation source

text: Enterobacter cloacae complex bacterium

text: Enterobacter cloacae complex bacterium

text: Enterobacter cloacae complex C45 ST873


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHU Clermont-ferrand

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Enterobacter cloacae complex C45 ST873 circular plasmid pC45-VIM4 isolated in France

text: France

text: diseased

text: homo sapiens

text: hospital

text: Enterobacter cloacae complex bacterium

text: Enterobacter cloacae complex bacterium

characteristic: title