characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: No

text: No

text: No

text: No

text: No

text: No

characteristic: bmi

text: 2012-06-25 00:00

text: stool sample

characteristic: description

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: Bacteroides

characteristic: enterotype

text: Urban Biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: non-hispanic

characteristic: ethnicity

text: Male

characteristic: gender

text: USA:CO:Aurora

characteristic: geo loc name

text: Yes

characteristic: high risk

text: Negative

characteristic: hiv

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

text: adult

text: Homo sapiens

text: years

text: cm

text: kg

text: No

text: Yes

text: 10/2/16 0:00

text: MSM

text: No

text: human gut metagenome

text: Yes

text: UCD-AMC

text: FALSE

text: White

text: < 1 time per week

text: stool

text: human gut metagenome

text: male

text: Gay


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: No

text: No

text: No

text: No

text: No

text: 2013-11-18 00:00

text: stool sample

text: TRUE

characteristic: elevation

characteristic: emp status

text: Host-associated

text: Animal

text: Animal distal gut

text: Bacteroides

text: Urban Biome

text: human-associated habitat

text: human-gut

text: feces

text: non-hispanic

text: Male

text: USA:CO:Aurora

text: Yes

text: Negative

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

characteristic: host common name

characteristic: host height

text: adult

characteristic: host life stage

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

text: No

characteristic: latitude

text: Yes

text: 9/23/16 0:00

characteristic: longitude

characteristic: miseq run

text: MSM

text: No

text: human gut metagenome

characteristic: organism

text: Yes

text: UCD-AMC

text: FALSE

text: White

characteristic: race

text: < 1 time per week

text: stool

characteristic: sample type

text: human gut metagenome

text: male

characteristic: sex

text: Gay

text: An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men


Figure 4_100uM_Favipiravir

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Figure 4_100uM_Favipiravir

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: Submitter Id

text: Please see associated paper - Determining the Mutation Bias of Favipiravir in Influenza Using Next-generation Sequencing

characteristic: description

text: Influenza A virus (A/England/195/2009(H1N1))

text: Whole genome sequencing to determine mutation bias caused by favipiravir in virus.

characteristic: title


Figure 4_10uM_Favipiravir

text: IMPERIAL COLLEGE LONDON

text: public

text: Figure 4_10uM_Favipiravir


Figure 4_0uM_Control

text: IMPERIAL COLLEGE LONDON

text: public

text: Figure 4_0uM_Control


F1 - passage 10

text: IMPERIAL COLLEGE LONDON

text: public

text: F1 - passage 10

text: F1 - passage 10 - Please see associated paper The Mechanism of Resistance to Favipiravir in Influenza

text: Whole genome sequencing to determine mutations causing favipiravir resistance.


F2 - passage 10

text: IMPERIAL COLLEGE LONDON

text: public

text: F2 - passage 10

text: F2 - passage 10 - Please see associated paper The Mechanism of Resistance to Favipiravir in Influenza


F3 - passage 10

text: IMPERIAL COLLEGE LONDON

text: public

text: F3 - passage 10

text: F3 - passage 10 - Please see associated paper The Mechanism of Resistance to Favipiravir in Influenza


C1 - passage 10

text: IMPERIAL COLLEGE LONDON

text: public

text: C1 - passage 10

text: C1 - passage 10 - Please see associated paper The Mechanism of Resistance to Favipiravir in Influenza


C2 - passage 10

text: IMPERIAL COLLEGE LONDON

text: public

text: C2 - passage 10

text: C2 - passage 10 - Please see associated paper The Mechanism of Resistance to Favipiravir in Influenza


C3 - passage 10

text: IMPERIAL COLLEGE LONDON

text: public

text: C3 - passage 10

text: C3 - passage 10 - Please see associated paper The Mechanism of Resistance to Favipiravir in Influenza


H3K4me1, rep1, fastq

text: public

text: H3K4me1, rep1, fastq

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: PE fastq reads

text: adult

characteristic: dev stage

text: hermaphrodite

characteristic: mating type

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K4me1, rep1, fastq


H3K4me1, rep2, fastq

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

text: public

text: H3K4me1, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

characteristic: organism

text: Pristionchus pacificus

text: H3K4me1, rep2, fastq


H3K4me1, rep3, fastq

text: public

text: H3K4me1, rep3, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K4me1, rep3, fastq


H3K4me3, rep1, fastq

text: public

text: H3K4me3, rep1, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K4me3, rep1, fastq


H3K4me3, rep2, fastq

text: public

text: H3K4me3, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K4me3, rep2, fastq


H3K4me3, rep3, fastq

text: public

text: H3K4me3, rep3, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K4me3, rep3, fastq


H3K9me3, rep1, fastq

text: public

text: H3K9me3, rep1, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K9me3, rep1, fastq


H3K9me3, rep2, fastq

text: public

text: H3K9me3, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K9me3, rep2, fastq


H3K27ac, rep1, fastq

text: public

text: H3K27ac, rep1, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K27ac, rep1, fastq


H3K27ac, rep2, fastq

text: public

text: H3K27ac, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K27ac, rep2, fastq


H3K27me3, rep1, fastq

text: public

text: H3K27me3, rep1, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K27me3, rep1, fastq


H3K27me3, rep2, fastq

text: public

text: H3K27me3, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K27me3, rep2, fastq


H3K36me3, rep1, fastq

text: public

text: H3K36me3, rep1, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K36me3, rep1, fastq


H3K36me3, rep2, fastq

text: public

text: H3K36me3, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: H3K36me3, rep2, fastq


Input, rep1, fastq

text: public

text: Input, rep1, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: Input, rep1, fastq


Input, rep2, fastq

text: public

text: Input, rep2, fastq

text: PE fastq reads

text: adult

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: Input, rep2, fastq


atac-seq, rep1, technical rep1, fastq

text: public

text: atac-seq, rep1, technical rep1, fastq

text: PE fastq reads

text: mixed stage

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: atac-seq, rep1, technical rep1, fastq


atac-seq, rep1, technical rep2, fastq

text: public

text: atac-seq, rep1, technical rep2, fastq

text: PE fastq reads

text: mixed stage

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: atac-seq, rep1, technical rep2, fastq


atac-seq, rep2, technical rep1, fastq

text: public

text: atac-seq, rep2, technical rep1, fastq

text: PE fastq reads

text: mixed stage

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: atac-seq, rep2, technical rep1, fastq


atac-seq, rep2, technical rep2, fastq

text: public

text: atac-seq, rep2, technical rep2, fastq

text: PE fastq reads

text: mixed stage

text: hermaphrodite

text: Pristionchus pacificus

text: Pristionchus pacificus

text: atac-seq, rep2, technical rep2, fastq


text: male

characteristic: ArrayExpress-SEX

text: mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: EBset1 d0 clone37


text: male

text: mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d0 clone43


text: male

text: mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d0 clone48


text: male

text: mus musculus

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d0 clone58

characteristic: title


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: EBset1 d1 clone37


text: male

characteristic: ArrayExpress-SEX

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d1 clone43


text: male

text: mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d1 clone48


text: male

text: mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d1 clone58


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

text: EBset1 d3 clone37


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: EBset1 d3 clone43


text: male

text: mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d3 clone48


text: male

text: mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d3 clone58


text: male

text: mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d7 clone37


text: male

text: mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d7 clone43


text: male

text: mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d7 clone48


text: male

text: mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d7 clone58


text: male

text: mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d13 clone37


text: male

text: mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d13 clone43


text: male

text: mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d13 clone48


text: male

text: mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset1 d13 clone58


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d0 clone37

characteristic: title


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: EBset2 d0 clone43


text: male

characteristic: ArrayExpress-SEX

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d0 clone48


text: male

text: mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d0 clone58


text: male

text: mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d1 clone37


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

text: EBset2 d1 clone43


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: EBset2 d1 clone48


text: male

text: mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d1 clone58


text: male

text: mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d3 clone37


text: male

text: mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d3 clone43


text: male

text: mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d3 clone48


text: male

text: mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d3 clone58


text: male

text: mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d7 clone37


text: male

text: mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d7 clone43


text: male

text: mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d7 clone48


text: male

text: mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset2 d7 clone58


text: male

text: mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d0 clone37


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d0 clone43

characteristic: title


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

characteristic: organism

text: Mus musculus

text: EBset3 d0 clone48


text: male

characteristic: ArrayExpress-SEX

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d0 clone58


text: male

text: mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d1 clone37


text: male

text: mus musculus

text: SC

text: public

text: house mouse

characteristic: common name

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d1 clone43


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mus musculus

text: EBset3 d1 clone48


text: male

text: mus musculus

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: EBset3 d1 clone58


text: male

text: mus musculus

characteristic: ENA-CHECKLIST

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d3 clone37


text: male

text: mus musculus

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d3 clone43


text: male

text: mus musculus

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d3 clone48


text: male

text: mus musculus

characteristic: External Id

text: SC

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d3 clone58


text: male

text: mus musculus

text: SC

characteristic: INSDC center name

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d7 clone37


text: male

text: mus musculus

text: SC

characteristic: INSDC first public

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d7 clone43


text: male

text: mus musculus

text: SC

characteristic: INSDC last update

text: public

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d7 clone48


text: male

text: mus musculus

text: SC

text: public

characteristic: INSDC status

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus

text: EBset3 d7 clone58


text: male

text: mus musculus

text: SC

text: public

characteristic: SRA accession

text: house mouse

text: Male

text: Mus musculus

text: Mus musculus


text: University of Dhaka

text: public

tag: Namespace:University of Dhaka

characteristic: Submitter Id

text: Yes

characteristic: environmental sample

text: soil metagenome

text: soil metagenome

text: Soil Sample


text: University of Dhaka

text: public

text: Yes

text: metagenome

characteristic: organism

text: metagenome

text: Water Sample

characteristic: title


text: NORWEGIAN INSTITUTE OF PUBLIC HEALTH

text: public

tag: Namespace:NORWEGIAN INSTITUTE OF PUBLIC HEALTH

characteristic: collection date

text: Serovar Enteritidis

characteristic: description

text: Norway

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: diseased person

characteristic: isolation source

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica


text: male

characteristic: ArrayExpress-SEX

text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Streptococcus pneumoniae

characteristic: common name

text: Male

characteristic: gender

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: subject id


text: female

text: Streptococcus pneumoniae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Streptococcus pneumoniae

text: Female

text: Streptococcus pneumoniae

characteristic: organism

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

text: SC

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

tag: Namespace:UNIVERSITY MEDICAL CENTER UTRECHT

text: WGS of E. faecium - Illumina NextSeq 2x150

characteristic: description

text: Enterococcus faecium

text: Enterococcus faecium


text: UNIVERSITY MEDICAL CENTER UTRECHT

text: public

text: WGS of E. faecium - Illumina MiSeq 2x250

text: Enterococcus faecium

text: Enterococcus faecium


text: public

tag: Namespace:Novo Nordisk Foundation Centre for Stem Cell Biology, University of Copenhagen, Denmark

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: human

text: Protocols: Washed once in PBS, and then harvested in RLT plus. Seeded each cell line at 150.000cells/cm2 in 12-wells in 1mL after single cell suspension with TrypLE Select 5 min, spin down and resuspended in media then counting on Sceptor cell counter 40µM (Millipore) diluted 1:10 in PBS. Differentiation experiments were performed three times (Diff #3, #4 and #5), each for all 12 cell lines, harvested for RNA and protein on various days, including for RNA Day 10 and Day 13 for all experiments. For immunocytochemistry staining cell lines H1, 22, 21sub10, 24sub3, H3(4th diff exp.), 101, 14(5th diff. exp.), 12, 28 were seeded in Ibidi slides as explained above.For 48 hours prior to differentiation cells were kept in E8 hESC media changing media every day also for differentiation. The protocol is slightly modified version from the Kieffer Lab (Rezania et al., 2014) including porcupine inhibitor IWP-6 at 5µM for days 3-6. Compounds and solutions are from ThermoFisher unless otherwise stated. Extracted using RNeasy Mini plus kit on a Qiacube (Qiagen). NEBNext Ultra II RNA Library Prep Kit - Module #E7770S NEBNext PolyA mRNA Magnetic Isolation Module #E7490 NEBNext multiplex Oligos for Illumina For building RNA-seq libraries two cell lines from each genotype and from differentiation #4 and #5 with 1µg of RNA using the NEB NEXT Ultra II with mRNA magnetic isolation module (NEB #E7775 and #E7490) with 5 cycles of amplification. Quality of the RNA and subsequently of the libraries were measured on a Fragment Analyser and the libraries were loaded accordingly on

text: HES1 and NEUROG3 homozygous double knockout

characteristic: genotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: embryo

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Novo Nordisk Foundation Centre for Stem Cell Biology, University of Copenhagen, Denmark

text: public

text: ArrayExpress

text: embryonic stem cell

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: embryonic stem cell

text: human

text: HES1 homozygous knockout

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: human

text: NEUROG3 homozygous knockout

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: embryo

text: Homo sapiens

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: human

characteristic: description

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: embryo

text: Homo sapiens


EV MAC DNA

characteristic: ENA-CHECKLIST

text: Uniwersity of Bern

text: public

text: EV MAC DNA

tag: Namespace:Uniwersity of Bern

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: DNA Seq meiotic proteins


MSH4-1 MAC DNA

characteristic: ENA-FIRST-PUBLIC

text: Uniwersity of Bern

text: public

text: MSH4-1 MAC DNA

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: DNA Seq meiotic proteins


MSH5 MAC DNA

characteristic: ENA-LAST-UPDATE

text: Uniwersity of Bern

text: public

text: MSH5 MAC DNA

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: DNA Seq meiotic proteins


characteristic: External Id

text: UNIVERSITY OF ESSEX

text: public

tag: Namespace:UNIVERSITY OF ESSEX

characteristic: collection date

text: bacterial 16S rRNA and amoA

text: grassland

characteristic: environment (biome)

text: grassland

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: Organic matter mineralization and nitrification: ammonia-oxidising archaea not bacteria dominate in grassland soils

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ESSEX

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: archaeal 16S rRNA and amoA

characteristic: description

text: grassland

text: grassland

text: soil

text: United Kingdom

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina MiSeq

text: soil

characteristic: title


E-MTAB-7186:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7186:Sample 1

tag: Namespace:Ecole Polytechnique Federale de Lausanne

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Chromatin from mouse ES-E14TG2a cells was immunoprecipitated by FloChIP technique - a novel microfluidic immunoprecipitation system, the details of which will be published in due course - using the following Abcam antibodies: H3k27ac (ab47290; H3k4me3 (ab8580), H3k4me1 (ab8895), H3k9me3 (ab8898), H3k27me3 (ab6147) PCR purification Nextera

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: Mus musculus

text: Sample 1


E-MTAB-7186:Sample 2

characteristic: ENA-CHECKLIST

text: Ecole Polytechnique Federale de Lausanne

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7186:Sample 2

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

text: Mus musculus

text: Sample 2


E-MTAB-7186:Sample 3

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7186:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

text: Mus musculus

text: Sample 3


E-MTAB-7186:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7186:Sample 4

text: ArrayExpress

text: embryonic stem cell

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: inner cell mass

text: Mus musculus

text: Sample 4

characteristic: title


E-MTAB-7186:Sample 5

characteristic: External Id

text: public

text: E-MTAB-7186:Sample 5

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: embryonic stem cell

characteristic: cell type

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

text: Mus musculus

text: Sample 5


E-MTAB-7186:Sample 6

text: public

text: E-MTAB-7186:Sample 6

text: ArrayExpress

text: embryonic stem cell

text: house mouse

characteristic: common name

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: Mus musculus

text: Sample 6


text: CONTROL

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: CONTROL

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: CONTROL

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


characteristic: External Id

text: ETH

text: public

characteristic: collection date

text: environmental bacteria

characteristic: common name

text: lake water filtered onto a 0.22um filter from which DNA was extracted

characteristic: description

text: sub-alpine freshwater lake

characteristic: environment (biome)

text: freshwater lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 47.072 N

characteristic: geographic location (latitude)

text: 8.319 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Photic

characteristic: light zone

text: metagenome

characteristic: organism

text: S-D-Bact-0341-b-S-17 (5�-CCTACGGGNGGCWGCAG-3�, 341F) / S-D-Bact-0785-a-A-21 (5�-GACTACHVGGGTATCTAATCC-3�, 805R)

characteristic: primer (f, r)

text: Mechanisms shaping methane-oxidizing bacterial communities in a stratified sub-alpine lake

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: lake water sample Rotsee

characteristic: title

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: environmental bacteria

characteristic: common name

text: sub-alpine freshwater lake

text: freshwater lake

text: water

text: Switzerland

text: 47.072 N

text: 8.319 E

text: metagenome

text: Aphotic

text: metagenome

text: metagenome

text: Illumina MiSeq

text: lake water sample Rotsee

text: water


text: STATENS SERUM INSTITUT

text: public

tag: Namespace:STATENS SERUM INSTITUT

text: Staphylococcus aureus

text: CC80 S. aureus evolution

characteristic: description

text: Algeria

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: CC80 S. aureus evolution


characteristic: ENA-CHECKLIST

text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Belgium

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Denmark

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


characteristic: External Id

text: STATENS SERUM INSTITUT

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Finland

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: France

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Gabon

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

characteristic: Submitter Id

characteristic: collection date

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Germany

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

characteristic: common name

text: CC80 S. aureus evolution

characteristic: description

text: Greece

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Kuwait

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Lebanon

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: CC80 S. aureus evolution


characteristic: ENA-CHECKLIST

text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Malaysia

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Poland

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


characteristic: External Id

text: STATENS SERUM INSTITUT

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Romania

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Serbia

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Slovenia

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

characteristic: Submitter Id

characteristic: collection date

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Spain

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

characteristic: common name

text: CC80 S. aureus evolution

characteristic: description

text: Sweden

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Switzerland

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: host health state

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Tunisia

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: Staphylococcus aureus

characteristic: organism

text: Staphylococcus aureus

text: CC80 S. aureus evolution


characteristic: ENA-CHECKLIST

text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Algeria

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: STATENS SERUM INSTITUT

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Nigeria

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


characteristic: External Id

text: STATENS SERUM INSTITUT

characteristic: INSDC center name

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Togo

text: not collected

text: Homo sapiens

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: STATENS SERUM INSTITUT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Staphylococcus aureus

text: CC80 S. aureus evolution

text: Uganda

text: not collected

text: Pan troglodytes

text: Staphylococcus aureus

text: Staphylococcus aureus

text: CC80 S. aureus evolution


text: ETH

text: public

characteristic: INSDC status

characteristic: SRA accession

text: environmental bacteria

text: lake water filtered onto a 0.22um filter from which DNA was extracted. pmoA genes were amplified and Illumina sequenced.

text: sub-alpine freshwater lake

characteristic: environment (biome)

text: freshwater lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Switzerland

characteristic: geographic location (depth)

text: 47.072 N

characteristic: geographic location (latitude)

text: 8.319 E

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Photic

characteristic: light zone

text: metagenome

text: A189f and mb661r (5�-GGNGACTGGGACTTCTGG-3�, 5�-CCGGMGCAACGTCYTTACC-3�)

characteristic: primer (f, r)

characteristic: project name

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: lake water sample Rotsee

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH

characteristic: INSDC center name

text: public

characteristic: Submitter Id

characteristic: collection date

text: environmental bacteria

characteristic: common name

characteristic: description

text: sub-alpine freshwater lake

text: freshwater lake

text: water

text: Switzerland

characteristic: geographic location (country and/or sea)

text: 47.072 N

text: 8.319 E

text: metagenome

text: Aphotic

text: metagenome

characteristic: organism

text: metagenome

text: Illumina MiSeq

text: lake water sample Rotsee

characteristic: title

text: water


E-MTAB-7190:Sample 1

text: Bicetre Hospital, EA7361

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7190:Sample 1

tag: Namespace:Bicetre Hospital, EA7361

text: ArrayExpress

characteristic: broker name

text: Protocols: An overnight culture of E. coli TOP10-pBIC1a was diluted 100-fold in fresh BHI broth and allowed to grow to an OD600 of 0.5. The culture was then split and imipenem (Imipenem-Cilastatin, Mylan, USA) was added to one of the cultures at a final concentration of 5 µg/ml. Ten minutes later, 2 ml of each culture were taken and mixed with RNA protect (Qiagen, Courtaboeuf, France) according to the manufacturer’s recommendations. Cells were immediately pelleted by a 10 min centrifugation at 5000 g. RNA was extracted using GeneJet RNA extraction kit (ThermoScientific). DNAse treatment was performed with the dsDNAse kit (ThermoScientific) cDNA libraries were prepared using the NEBNext® Ultra Directional RNA Library Prep Kit for Illumina protocol (New England Biolabs, MA, USA). The quality of the cDNA was validated using the Agilent 2100 Bioanalyzer DNA1000 kit (Agilent Technologies) and quantity was determined with the Qubit dsDNA BR Assay (ThermoFisher Scientific).

characteristic: genotype

text: cell suspension culture

characteristic: growth condition

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

characteristic: strain

text: Sample 1


E-MTAB-7190:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Bicetre Hospital, EA7361

text: public

text: E-MTAB-7190:Sample 2

text: ArrayExpress

text: cell suspension culture

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Sample 2


E-MTAB-7190:Sample 3

text: Bicetre Hospital, EA7361

characteristic: INSDC center name

text: public

text: E-MTAB-7190:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: cell suspension culture

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Sample 3


E-MTAB-7190:Sample 4

text: Bicetre Hospital, EA7361

text: public

text: E-MTAB-7190:Sample 4

text: ArrayExpress

characteristic: description

text: cell suspension culture

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Sample 4


E-MTAB-7190:Sample 5

text: Bicetre Hospital, EA7361

text: public

text: E-MTAB-7190:Sample 5

text: ArrayExpress

text: cell suspension culture

text: Escherichia coli K-12

characteristic: organism

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Sample 5


E-MTAB-7190:Sample 6

text: Bicetre Hospital, EA7361

text: public

text: E-MTAB-7190:Sample 6

text: ArrayExpress

text: cell suspension culture

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Escherichia coli K-12

text: Sample 6

characteristic: title


text: CONTROL

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapien

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC first public

text: public

text: human

characteristic: common name

text: Homo sapiens

text: CONTROL

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: IATA-CSIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: human

text: Oral

text: Oral

characteristic: environment (biome)

text: oral collection

characteristic: environment (feature)

text: oral

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-oral

characteristic: human oral environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: HPV-microbiota

characteristic: project name

text: Homo sapiens

text: sequencing

characteristic: sequencing method

text: Oral


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IATA-CSIC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Milk

characteristic: description

text: Milk

text: Breast collection

text: breast milk

text: Finland

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: organism

text: HPV-microbiota

text: Homo sapiens

text: sequencing

text: Milk

characteristic: title


text: UNIVERSITY OF LIVERPOOL

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF LIVERPOOL

characteristic: collection date

text: whole genome sequence of D23580

text: Malawi

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood of 26-month child with malaria and anemia

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:LUND UNIVERSITY

text: African ostrich

text: Semi-desert

characteristic: environment (biome)

text: Research Farm

characteristic: environment (feature)

text: Faeces

characteristic: environment (material)

text: South Africa

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host subject id

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Struthio camelus

text: OstrichGutMicrobiomeDevelopment

characteristic: project name

text: Struthio camelus

text: Illumina MiSeq

characteristic: sequencing method

text: Major shifts in gut microbiota during development and its relationship to growth in ostriches


text: LUND UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: African ostrich

characteristic: common name

text: Caecum.Diseased

characteristic: description

text: Semi-desert

text: Research Farm

text: Caecum

text: South Africa

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Struthio camelus

characteristic: organism

text: OstrichGutMicrobiomeDysbiosis

text: Struthio camelus

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

characteristic: INSDC center name

text: public

text: African ostrich

text: Caecum.Control

text: Semi-desert

characteristic: environment (biome)

text: Research Farm

characteristic: environment (feature)

text: Caecum

characteristic: environment (material)

text: South Africa

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Struthio camelus

text: OstrichGutMicrobiomeDysbiosis

text: Struthio camelus

text: Illumina MiSeq


text: LUND UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: African ostrich

text: Colon.Diseased

text: Semi-desert

text: Research Farm

text: Colon

text: South Africa

characteristic: host subject id

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Struthio camelus

text: OstrichGutMicrobiomeDysbiosis

characteristic: project name

text: Struthio camelus

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

text: public

characteristic: collection date

text: African ostrich

characteristic: common name

text: Colon.Control

characteristic: description

text: Semi-desert

text: Research Farm

text: Colon

text: South Africa

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Struthio camelus

characteristic: organism

text: OstrichGutMicrobiomeDysbiosis

text: Struthio camelus

text: Illumina MiSeq

characteristic: title


text: LUND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: African ostrich

text: EnvFood.NA

text: Semi-desert

characteristic: environment (biome)

text: Research Farm

characteristic: environment (feature)

text: EnvFood

characteristic: environment (material)

text: South Africa

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Struthio camelus

text: OstrichGutMicrobiomeDysbiosis

text: Struthio camelus

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

text: public

characteristic: Submitter Id

text: African ostrich

text: EnvSoil.NA

text: Semi-desert

text: Research Farm

text: EnvSoil

text: South Africa

characteristic: host subject id

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Struthio camelus

text: OstrichGutMicrobiomeDysbiosis

characteristic: project name

text: Struthio camelus

text: Illumina MiSeq

characteristic: sequencing method


text: LUND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: African ostrich

characteristic: common name

text: EnvWater.NA

characteristic: description

text: Semi-desert

text: Research Farm

text: EnvWater

text: South Africa

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Struthio camelus

characteristic: organism

text: OstrichGutMicrobiomeDysbiosis

text: Struthio camelus

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

text: public

characteristic: SRA accession

text: African ostrich

text: Ileum.Diseased

text: Semi-desert

characteristic: environment (biome)

text: Research Farm

characteristic: environment (feature)

text: Ileum

characteristic: environment (material)

text: South Africa

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Struthio camelus

text: OstrichGutMicrobiomeDysbiosis

text: Struthio camelus

text: Illumina MiSeq


text: LUND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: African ostrich

text: Ileum.Control

text: Semi-desert

text: Research Farm

text: Ileum

text: South Africa

characteristic: host subject id

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Struthio camelus

text: OstrichGutMicrobiomeDysbiosis

characteristic: project name

text: Struthio camelus

text: Illumina MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

text: public

characteristic: collection date

text: African ostrich

characteristic: common name

characteristic: description

text: Semi-desert

text: Research Farm

text: Faeces

text: South Africa

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Struthio camelus

characteristic: organism

text: OstrichCoprophagy

text: Struthio camelus

text: Illumina MiSeq

characteristic: title


text: LUND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: African ostrich

text: Adult

text: Semi-desert

characteristic: environment (biome)

text: Research Farm

characteristic: environment (feature)

text: Faeces

characteristic: environment (material)

text: South Africa

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Struthio camelus

text: OstrichCoprophagy

text: Struthio camelus

text: Illumina MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUND UNIVERSITY

text: public

characteristic: Submitter Id

text: African ostrich

text: Semi-desert

text: Research Farm

text: Blank

text: South Africa

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Struthio camelus

text: OstrichCoprophagy

characteristic: project name

text: Struthio camelus

text: Illumina MiSeq

characteristic: sequencing method


text: LUND UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: African ostrich

characteristic: common name

text: Blank

characteristic: description

text: Semi-desert

text: Research Farm

text: Blank

text: South Africa

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: Struthio camelus

characteristic: organism

text: OstrichCoprophagy

text: Struthio camelus

text: Illumina MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Georgia State University

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Georgia State University

text: house mouse

text: LCMproject

text: terrestrial biome

characteristic: environment (biome)

text: animal-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: mimarks-survey

text: Mus musculus

text: LCMproject

text: Mus musculus

text: Illumina MiSeq

text: LCMproject


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SEOUL NATIONAL UNIVERISITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:SEOUL NATIONAL UNIVERISITY

characteristic: Submitter Id

text: human

text: Temporal(Anterior temporal) lobe of CTE postmortem brain

text: Homo sapiens

text: Homo sapiens


text: SEOUL NATIONAL UNIVERISITY

characteristic: INSDC last update

text: public

text: human

characteristic: common name

text: Temporal(Anterior temporal) lobe of CTE/AD postmortem brain

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: SEOUL NATIONAL UNIVERISITY

text: public

text: human

text: Temporal(Anterior temporal) lobe of AD postmortem brain

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: SEOUL NATIONAL UNIVERISITY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: Temporal(Anterior temporal) lobe of Normal postmortem brain

text: Homo sapiens

text: Homo sapiens


text: WAGENINGEN UNIVERSITY

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: metagenome

text: metagenome

text: Bacteriome in sediment


tag: attribute

text: WAGENINGEN UNIVERSITY

text: public

text: PCR without template (contamination).

text: metagenome

text: metagenome

text: Bacteriome in negative control


text: WAGENINGEN UNIVERSITY

text: public

text: metagenome

text: metagenome

text: Bacteriome in sea cucumber foregut


text: WAGENINGEN UNIVERSITY

text: public

text: metagenome

text: metagenome

text: Bacteriome in sea cucumber hindgut


text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: HEINRICH-HEINE UNIVERSITY

text: public

tag: Namespace:HEINRICH-HEINE UNIVERSITY

characteristic: collection date

text: Cup plant tGBS contigs were obtained by assembling trimmed tGBS reads from 96 individual plants to be used as a surrogate for a reference genome for SNP discovery. Assembling was performed first for each individual and then for all 96 plants. This file represents 1,197,534 consensus sequences with a total length of 121.7 Mb.

text: 8 Mb

characteristic: estimated size

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: DNA isolated using DNeasy Plant Mini Kit (Qiagen, Hilden, Germany)

characteristic: isolation and growth condition

text: Silphium perfoliatum

text: oung expanding leaf PO:0001052

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf PO:0025034

characteristic: plant structure

text: diploid

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Silphium perfoliatum

text: Silphium perfoliatum assembled tGBS reads


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:CCRCB, Queen's University Belfast, Northern Ireland /  Ludwig Boltzmann Institute for Cancer Research, Vienna, Austria

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: lymphoblast

characteristic: cell tyoe

text: human

characteristic: common name

text: Protocols: 10^7 cells were harvested by centrifugation at 300 x g for 5 minutes before fractionation and RNA extraction RPMI1640 w/ 2mM L-Glutamine (Sigma-Aldrich) & 10% FBS Superior (Biochrom) & 1mM Ultra-Glutamine (Lonza) & 1% P/S (Gibco) Cytoplasmic/Nuclear RNA extraction was performed essentially as described in Gagnon et al. Nat. Protocols 2014. Briefly, cells were resuspended in ice-cold hypotonic lysis buffer (HLB) supplemented with SUPERase Inhibitor (Ambion). The free nuclei were then precipitated by centrifugation at 1000 x g for 3 minutes. The cytoplasmic supernatant was spun again at maximum speed for 2 minutes to remove any contaminating nuclei. Nuclei and cytoplasmic fractions were mixed directly with TRIzol supplemented with 1mM EDTA to inhibit ion-mediated RNA catalysis and heated at 65°C for 10 minutes. Samples were mixed vigorously with chloroform and spun at maximum speed at 4°C for 15 minutes. The aqueous, RNA-containing, fraction was then mixed 1:1 with ethanol and applied to an RNA-binding column (Direct-zol™ R2051, Zymo Research). The RNA was then washed and on-column DNAse I digested, before elution with RNase-free water. Library preparation used the SMARTer Stranded Total RNA Sample Prep Kit from Takara Clontech (Cat. No. 634873) and a 2% by mass RNA spike-in of Lexogen Spike-In RNA Variants (SIRV 025.03) was included.

characteristic: description

text: chronic myelogenous leukemia

characteristic: disease

text: SF3B1 K700E

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CCRCB, Queen's University Belfast, Northern Ireland / Ludwig Boltzmann Institute for Cancer Research, Vienna, Austria

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: lymphoblast

text: human

text: chronic myelogenous leukemia

text: SF3B1 K700E

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: lymphoblast

text: human

text: chronic myelogenous leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens


characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: lymphoblast

text: human

text: Protocols: 10^7 cells were harvested by centrifugation at 300 x g for 5 minutes before fractionation and RNA extraction RPMI1640 w/ 2mM L-Glutamine (Sigma-Aldrich) & 10% FBS Superior (Biochrom) & 1mM Ultra-Glutamine (Lonza) & 1% P/S (Gibco) To extract total cellular RNA, cells were directly lysed in TRIzol supplemented with 1mM EDTA to inhibit ion-mediated RNA catalysis and heated at 65°C for 10 minutes. Samples were mixed vigorously with chloroform and spun at maximum speed at 4°C for 15 minutes. The aqueous, RNA-containing, fraction was then mixed 1:1 with ethanol and applied to an RNA-binding column (Direct-zol™ R2051, Zymo Research). The RNA was then washed and on-column DNAse I digested, before elution with RNase-free water. Library preparation used the SMARTer Stranded Total RNA Sample Prep Kit from Takara Clontech (Cat. No. 634873) and a 2% by mass RNA spike-in of Lexogen Spike-In RNA Variants (SIRV 025.03) was included.

text: chronic myelogenous leukemia

text: SF3B1 K700E

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens


text: public

text: ArrayExpress

text: lymphoblast

characteristic: cell tyoe

text: human

characteristic: common name

characteristic: description

text: chronic myelogenous leukemia

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

tag: Namespace:IOR - Institute of Oncology Research

text: ArrayExpress

text: LNCaP

text: human

text: Protocols: For over-expression a derivate of the pLX304 vector was used in which the CMV promoter has been exchanged to a PGK promoter and the blasticidin cassette was exchanged by a puromycin resistance cassette (pLX_TRC_307, available at Addgene as Plasmid 62511, pcw107). All SPOP ORFs were cloned into pLX_TRC_307-mOrange using Nhe1 and Mlu1. After infection, cells were selected in the presence of puromycin (2 ug/ml). The ∆ERG construct was cloned into the same vector (pcw107) but with the blasticidin resistance selection casette, pcw107(blast). LNCaP cells were grown in RPMI (Gibco) and supplemented with 10% FBS (Gibco), 1% Penicilin/Streptomycin/L-Glutamate. All cells were incubated at 37°C and 5% CO2. Cells were routinely tested for mycoplasma contamination. RNA was extracted using the Rnasy kit (Qiagen) and sample quality was assessed using Agilent Bioanalyzer. RNA libraries were prepared for sequencing using NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina®

text: prostate carcinoma

text: pcw107 empty vector

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate

characteristic: organism part

text: empty vector

characteristic: phenotype

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IOR - Institute of Oncology Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: ERG overexpression

text: Homo sapiens


characteristic: External Id

text: IOR - Institute of Oncology Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[F102C] overexpression

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

characteristic: broker name

text: LNCaP

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: prostate carcinoma

text: pcw107_SPOP[F102C]; pcw107(blast)_ERG

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[F102C] and ERG double overexpression

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate

characteristic: organism part

text: SPOP[F133S] overexpression

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: pcw107_SPOP[F133S]; pcw107(blast)_ERG

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[F133S] and ERG double overexpression

characteristic: phenotype

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOR - Institute of Oncology Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[W131G] overexpression

text: Homo sapiens


text: IOR - Institute of Oncology Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: pcw107_SPOP[W131G]; pcw107(blast)_ERG

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[W131G] and ERG double overexpression

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

characteristic: broker name

text: LNCaP

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[WT] overexpression

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

characteristic: disease

text: pcw107_SPOP[WT]; pcw107(blast)_ERG

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate

characteristic: organism part

text: SPOP[WT] and ERG double overexpression

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[Y87C] overexpression

characteristic: phenotype

text: Homo sapiens

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOR - Institute of Oncology Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: LNCaP

text: human

text: prostate carcinoma

text: pcw107_SPOP[Y87C]; pcw107(blast)_ERG

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[Y87C] and ERG double overexpression

text: Homo sapiens


text: The James Hutton Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:The James Hutton Institute

characteristic: Submitter Id

characteristic: collection date

text: Raspberry plants from a commercial raspberry plantation in Angus, Scotland, UK, showed viral infection symptoms: D5 showed vein yellowing

characteristic: estimated size

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Field grown

characteristic: isolation and growth condition

characteristic: number of replicons

text: Rubus idaeus

text: Fruiting

characteristic: plant developmental stage

text: Soil

characteristic: plant growth medium

text: Leaf

characteristic: plant structure

text: diploid

characteristic: ploidy

text: diseased

characteristic: sample health state

text: Rubus idaeus

text: RNA-seq from red raspberry (Rubus idaeus) with virus symptoms: vein yellowing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The James Hutton Institute

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Raspberry plants from a commercial raspberry plantation in Angus, Scotland, UK, showed viral infection symptoms: D6 showed leaf blade yellowing.

characteristic: description

text: United Kingdom

text: Field grown

text: Rubus idaeus

characteristic: organism

text: Fruiting

text: Soil

text: Leaf

text: diploid

text: diseased

text: Rubus idaeus

text: RNA-seq from red raspberry (Rubus idaeus) with virus symptoms: leaf blade yellowing

characteristic: title


text: IOR - Institute of Oncology Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: VCaP

characteristic: cell line

text: human

characteristic: common name

text: Protocols: For stable knockdown experiments, cells were infected with pLKO-1 vectors (Sigma). Two different hairpins were used. After infection, cells were selected in the presence of puromycin (2 ug/ml). VCaP were grown in DMEM (Gibco) and supplemented with 10% FBS (Gibco), 1% Penicilin/Streptomycin/L-Glutamate. All cells were incubated at 37°C and 5% CO2. Cells were routinely tested for mycoplasma contamination. RNA was extracted using the Rnasy kit (Qiagen) and sample quality was assessed using Agilent Bioanalyzer. RNA libraries were prepared for sequencing using NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina®

text: prostate carcinoma

characteristic: disease

text: pcw107_SPOP[Y87C]; pLKO.1_shZMYND11_1

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: prostate

characteristic: organism part

text: SPOP[Y87C] overexpression with ZMYND11 knockdown

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: VCaP

text: human

text: prostate carcinoma

text: pcw107_SPOP[Y87C]; pLKO.1_shZMYND11_2

text: Homo sapiens

text: Homo sapiens

text: prostate

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: VCaP

text: human

characteristic: description

text: prostate carcinoma

text: pcw107_SPOP[Y87C]; pLKO.1 empty vector_1

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate

text: SPOP[Y87C] overexpression without ZMYND11 knockdown

text: Homo sapiens


text: IOR - Institute of Oncology Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: VCaP

text: human

text: prostate carcinoma

text: pcw107_SPOP[Y87C]; pLKO.1 empty vector_2

text: Homo sapiens

text: Homo sapiens

text: prostate

text: Homo sapiens

characteristic: title


text: IOR - Institute of Oncology Research

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: VCaP

characteristic: cell line

text: human

characteristic: common name

text: prostate carcinoma

text: pcw107 empty vector

text: Homo sapiens

text: Homo sapiens

text: prostate

text: empty overexpression vector

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: VCaP

text: human

text: prostate carcinoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: prostate

characteristic: organism part

text: ZMYND11[DG1] overexpression

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: VCaP

text: human

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: ZMYND11[DG2] overexpression

text: Homo sapiens


text: IOR - Institute of Oncology Research

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: VCaP

text: human

characteristic: description

text: prostate carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prostate

text: ZMYND11[WT] overexpression

text: Homo sapiens


E-MTAB-7193:Sample 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7193:Sample 1

tag: Namespace:Evolution and maintenance of circular chromosomes,Genome biology department, Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universite-Paris-Sud, Universite Paris-Saclay, Gif-sur-Yvette,France,

text: ArrayExpress

text: Protocols: Bacterial strains were cultivated at 30C either in M9 Minimal medium or LB rich medium either to exponential phase (0.2 OD 650nm) or to stationnary phase (overnight culture). 1- FX85: EPV50 (WT) grown in M9 minimal medium supplemented with 0.4 % fructose to exponential phase (0.2 OD 650 nm). 2- FX86: EPV50 (WT) grown in M9 minimal medium supplemented with 0.4 % fructose to stationary phase (long overnight). 3- FX288: EGV140 (oriL3) grown in M9 minimal medium supplemented with 0.4 % fructose to exponential phase (0.2 OD 650 nm). 4- FX289:EGV140 (oriL3) grown in M9 minimal medium supplemented with 0.4 % fructose to stationary phase (long overnight). 5- FX290: EGV111 (oriR4) grown in M9 minimal medium supplemented with 0.4 % fructose to exponential phase (0.2 OD 650 nm). 6- FX291:EGV111 (oriR4) grown in M9 minimal medium supplemented with 0.4 % fructose to stationary phase (long overnight). 7- FX61:EMV01 (WT) grown in LB medium to exponential phase (0.2 OD 650nm) 8- FX62:EMV01 (WT) grown in LB medium to stationary phase (overnight) 9- FX286:EGV140 (oriL3) grown in LB medium to exponential phase (0.2 OD 650nm) 10- FX287:EGV140 (oriL3) grown in LB medium to stationary phase (overnight) 11- FX292:EGV111 (oriR4) grown in LB medium to exponential phase (0.2 OD 650nm) 12- FX49: MCH1 (WT monochromosome) grown in M9 minimal medium supplemented with 0.4 % fructose to exponential phase (0.2 OD 650 nm). 13- FX48: MCH1 (WT monochromosome) grown in M9 minimal medium supplemented with 0.4 % fructose to stationary phase (long overnight). 14- FX11: EGV369 (oriL3 monochromosome) grown in M9 minimal medium supplemented with 0.4 % fructose to exponential phase (0.2 OD 650 nm). 15- FX12: EGV366 (oriR4 monochromosome) grown in M9 minimal medium supplemented with 0.4 % fructose to exponential phase (0.2 OD 650 nm). Chromosomal DNA was extracted using the Sigma GenElute bacterial genomic DNA kit. 5 μg of DNA were used to generate a genomic library according to Illumina's protocol. The libraries and the sequencing were performed by the High-throughput Sequencing facility of the I2BC (http://www.i2bc.paris-saclay.fr/spip.php?article399〈=en,CNRS, Gif-sur-Yvette, France). Genomic DNA libraries were made with the ‘Nextera DNA library preparation kit’ (Illumina) following the manufacturer’s recommendations.

text: wild type genotype

text: M9 minimal medium, exponential phase

characteristic: growth condition

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-7193:Sample 2

text: Evolution and maintenance of circular chromosomes,Genome biology department, Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Universite-Paris-Sud, Universite Paris-Saclay, Gif-sur-Yvette,France,

text: public

text: E-MTAB-7193:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: wild type genotype

characteristic: genotype

text: M9 minimal medium, stationary phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 2


E-MTAB-7193:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7193:Sample 3

text: ArrayExpress

text: M9 minimal medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 3


E-MTAB-7193:Sample 4

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7193:Sample 4

text: ArrayExpress

text: M9 minimal medium, stationary phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 4


E-MTAB-7193:Sample 5

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7193:Sample 5

text: ArrayExpress

text: M9 minimal medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 5


E-MTAB-7193:Sample 6

characteristic: External Id

text: public

text: E-MTAB-7193:Sample 6

text: ArrayExpress

text: M9 minimal medium, stationary phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 6


E-MTAB-7193:Sample 7

text: public

characteristic: INSDC status

text: E-MTAB-7193:Sample 7

text: ArrayExpress

text: wild type genotype

text: LB rich medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 7


E-MTAB-7193:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-7193:Sample 8

text: ArrayExpress

text: wild type genotype

text: LB rich medium, stationary phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 8


E-MTAB-7193:Sample 9

text: public

text: E-MTAB-7193:Sample 9

text: ArrayExpress

characteristic: description

text: LB rich medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 9


E-MTAB-7193:Sample 10

text: public

text: E-MTAB-7193:Sample 10

text: ArrayExpress

text: LB rich medium, stationary phase

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 10


E-MTAB-7193:Sample 11

characteristic: INSDC center name

text: public

text: E-MTAB-7193:Sample 11

text: ArrayExpress

text: LB rich medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 11


E-MTAB-7193:Sample 12

characteristic: INSDC first public

text: public

text: E-MTAB-7193:Sample 12

text: ArrayExpress

text: wild type monochromosome

text: M9 minimal medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 12


E-MTAB-7193:Sample 13

characteristic: INSDC last update

text: public

text: E-MTAB-7193:Sample 13

text: ArrayExpress

text: wild type monochromosome

text: M9 minimal medium, stationary phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 13


E-MTAB-7193:Sample 14

text: public

text: E-MTAB-7193:Sample 14

text: ArrayExpress

text: oriL3 monochromosome

text: M9 minimal medium, exponential phase

characteristic: growth condition

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

text: Sample 14


E-MTAB-7193:Sample 15

text: public

text: E-MTAB-7193:Sample 15

text: ArrayExpress

text: oriR4 monochromosome

text: M9 minimal medium, exponential phase

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

text: O1 biovar El Tor str. N16961

characteristic: strain

text: Sample 15


text: Evandro Chagas Institute

text: public

tag: Namespace:Evandro Chagas Institute

characteristic: collection date

text: tissue sample from bat

text: tropical lowland evergreen broadleaf rain forest

characteristic: environment (biome)

text: forested area

characteristic: environment (feature)

text: tissue

characteristic: environment (material)

text: Brazil

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Desmodus rotundus endogenous retrovirus

characteristic: project name

text: Desmodus rotundus endogenous retrovirus

text: Illumina

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Iranian Research Organization for Science and Technology

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection time

text: Unpolluted Soil Taxonomy ID:256318

characteristic: description

text: tropical desert biome

text: desert

text: soil

text: soil

characteristic: environmental package

text: Iran

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Marun oil-fields

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mgrast id

text: metagenome

characteristic: organism

text: Metagenomic study on microbial diversity of bioremediated soils contaminated with oil-based-drilling-mud

text: Unpolluted Soil

characteristic: sample name

text: metagenome

text: illumina

text: soil

characteristic: soil environmental package

text: Unpolluted Soil Taxonomy ID:256318


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Iranian Research Organization for Science and Technology

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: MGRAST

characteristic: collection date

text: Biostimulated Soil Taxonomy ID:256318

text: tropical desert biome

characteristic: environment (biome)

text: desert

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: soil

text: Iran

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Marun oil-fields

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: Biostimulated Soil

text: metagenome

text: illumina

characteristic: sequencing method

text: soil

text: Biostimulated Soil Taxonomy ID:256318

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: MGRAST

characteristic: broker name

characteristic: collection time

text: Bioremediated Soil Taxonomy ID:256318

characteristic: description

text: tropical desert biome

text: desert

text: soil

text: soil

characteristic: environmental package

text: Iran

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: Marun oil-fields

characteristic: geographic location (region and locality)

text: metagenome

characteristic: mgrast id

text: metagenome

characteristic: organism

text: Bioremediated Soil

characteristic: sample name

text: metagenome

text: illumina

text: soil

characteristic: soil environmental package

text: Bioremediated Soil Taxonomy ID:256318


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Caucasian

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: collection date

text: human

characteristic: common name

text: MS-Caucasian

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: MS

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: MS-Study

characteristic: project name

text: Homo sapiens

text: Illumina Hiseq 4000

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Caucasian

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: MS-Caucasian

characteristic: description

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: MS

text: male

text: human-associated

text: metagenome

text: Homo sapiens

characteristic: organism

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000


text: Hispanic

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

characteristic: common name

text: MS-Hispanic

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: MS

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: MS-Study

characteristic: project name

text: Homo sapiens

text: Illumina Hiseq 4000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hispanic

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: MS-Hispanic

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: MS

text: male

text: human-associated

text: metagenome

text: Homo sapiens

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000

characteristic: sequencing method

characteristic: title


text: African American

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

characteristic: common name

text: MS-African American

characteristic: description

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: MS

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: Homo sapiens

characteristic: organism

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: African American

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: MS-African American

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: MS

text: male

text: human-associated

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: MS-Study

characteristic: project name

text: Homo sapiens

text: Illumina Hiseq 4000


text: African American

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

characteristic: common name

text: Control-African American

characteristic: description

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: Control

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

text: metagenome

text: Homo sapiens

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000

characteristic: sequencing method

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: African American

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Control-African American

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: Control

text: male

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: Homo sapiens

characteristic: organism

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000


text: Caucasian

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

characteristic: common name

text: Control-Caucasian

characteristic: description

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: Control

characteristic: host disease status

text: female

characteristic: host sex

characteristic: host subject id

text: human-associated

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: MS-Study

characteristic: project name

text: Homo sapiens

text: Illumina Hiseq 4000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Caucasian

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Control-Caucasian

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: Control

text: male

text: human-associated

text: metagenome

text: Homo sapiens

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000

characteristic: sequencing method

characteristic: title


text: Hispanic

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

characteristic: common name

text: Control-Hispanic

characteristic: description

text: urban biome

characteristic: environment (biome)

text: human-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: Control

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-associated

characteristic: human associated environmental package

text: metagenome

text: Homo sapiens

characteristic: organism

text: MS-Study

text: Homo sapiens

text: Illumina Hiseq 4000


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Hispanic

characteristic: IHMC ethnicity

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: Control-Hispanic

text: urban biome

text: human-associated habitat

text: feces

text: USA

text: Control

text: female

text: human-associated

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: MS-Study

characteristic: project name

text: Homo sapiens

text: Illumina Hiseq 4000