characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: University of Tasmania

characteristic: collected by

text: common wombat

characteristic: common name

text: Australia

characteristic: geographic location (country and/or sea)

text: Tasmania

characteristic: geographic location (region and locality)

text: Scott Carver

characteristic: identified by

text: Vombatus ursinus

text: Vombatus ursinus

text: thyroid

characteristic: tissue type


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UNIVERSITY OF COLOGNE

characteristic: INSDC center name

text: public

tag: Namespace:UNIVERSITY OF COLOGNE

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: title


characteristic: ENA-LAST-UPDATE

text: FISABIO - Public Health

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:FISABIO - Public Health

text: Faecal sample

characteristic: bio material

text: human gut metagenome

characteristic: description

text: Faecal sample

characteristic: isolation source

text: human gut metagenome

text: human gut metagenome


text: European Otter

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Eurasian river otter

characteristic: common name

text: Lutra lutra

text: Lutra lutra

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-7068:Anlotinib_resistant_NCI-H1975_control_GTGGCC_L003_R1.fastq

tag: Namespace:Shanghai Chest Hospital, Shanghai Jiao Tong University

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: The cells were cultured in RPMI 1640 medium (Gibco, USA) supplement with 10% FBS (Gibco, USA), and 0.1 mg/ml streptomycin, and 100 U/ml penicillin. All cells were incubated at 37℃, 5% CO2 in a humidified incubator. Cells cultured in 10 cm diametre dish. 1 ml trizol reagent (Life Technologies, Inc., USA) was used to lyse cell samples. Total RNA isolation using standard procedures.Oligotex mRNA Mini Kit (Qiagen, Germany) was performed to collect pure mRNA. About 100 ng mRNA of each sample was used to library. The library procedure includes cDNA reverse-transcription, end repair, ligation, and PCR amplification.

text: non-small cell lung adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

text: Anlotinib-resistance

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

text: Shanghai Chest Hospital, Shanghai Jiao Tong University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7068:Anlotinib_resistant_NCI-H1975_treatment_GTGAAA_L003_R1.fastq

text: ArrayExpress

text: epithelial cell

text: human

characteristic: description

text: non-small cell lung adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: Anlotinib-resistance

text: Homo sapiens

characteristic: title


name: E-MTAB-7073:Sample 1 ALS neuro-muscular junction

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

tag: Namespace:Department of Environmental , Biological and Pharmaceutical Sciences and Technologies (DiSTABiF) University of Campania “L. Vanvitelli”

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: Protocols: Peripheral blood and neuromuscular junction from a total of 70 patients with sporadic amyotrophic lateral sclerosis (n = 45), and healthy controls (n = 25) was obtained (see Table 1 Supplementary file). Blood samples from healthy controls and from patients with ALS were obtained from the Monaldi Hospital, Naples, Italy and neuromuscular junction from ALS patients were purchased from Edinburgh Tissue Bio Bank. Detailed patient characteristics are listed in Table 1 Supplementary file. ALS patients have been diagnosed as clinically definite sALS with the support of electroneuromyography (ENMG). The onset of the disease was 1-2 years before diagnosis. The mean age of patients and controls was 62 ± 10 years. RNA extraction was performed as in De Felice et al (2014). Briefly, we obtained ten micrograms of total RNA from peripheral blood samples drawn from patients and controls in the morning. Trizol (Invitrogen, no. 15596-026) method has been used for isolation and purification of RNA from whole blood and from neuromuscular junction samples. RNA was isolated including a DNase digestion step. These standardized RNA isolation procedures guarantee high-quality RNA. Using the Agilent 2100 Bioanalyzer platform (Agilent Technologies) RNA samples were quality-checked documenting the identification of 18-S and 28-S ribosomal RNA (rRNA) peaks .The yields were 8-15 μg, and the RNA Integrity Number (RIN) was between 7.2 and 10. Such results fulfilled published data, reporting that RNA with a RIN >6 is of sufficient quality for miRNA microarray experiments as well as gene and microRNA expression-profiling experiments We performed the enrichment of small RNA fraction from total RNA utilizing the Magnetic Bead Cleanup Module (Life Technologies, Carlsbad, CA, USA). Using Ion Total RNA-Seq kit v2 Life Technologies, Carlsbad, CA, USA, 50 ng of enriched small RNA sample was ligated to proper adapters and reverse transcribed to cDNA. cDNA samples were size-selected from 50 to 300 nt (Magnetic Bead Cleanup Module, Life Technologies), and PCR amplified using 5’ primers containing a unique index barcode (Ion XpressTM RNA-Seq Barcode 1-16 Kit, Life Technologies, Carlsbad, CA, USA). We assessed the yield and size distribution of the small RNA libraries using the Agilent 2100 Bioanalyzer TM instrument and the Agilent HS DNA kit. We amplified similarly pooled libraries on Ion SphereTM Particles (ISPs) provided by the Life Technologies Ion PI Hi-Q Chef kit. All the steps to perform the emulsion PCR and the loading of the pooled libraries in the Life Technologies ION PI Chip v3 were performed automatically on Life Technologies ION Chef Instrument. Eight libraries were pooled in one chip.

text: adult

characteristic: developmental stage

text: sporadic amyotrophic lateral sclerosis

text: mixed pool of 45 donors

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: muscle tissue

text: neuromuscular junction

characteristic: sampling site

text: Homo sapiens

text: Sample 1 ALS neuro-muscular junction


name: E-MTAB-7073:Sample 2 ALS neuro-muscular junction

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Department of Environmental , Biological and Pharmaceutical Sciences and Technologies (DiSTABiF) University of Campania “L. Vanvitelli”

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: sporadic amyotrophic lateral sclerosis

characteristic: disease

text: mixed pool of 45 donors

text: Homo sapiens

text: Homo sapiens

text: muscle tissue

text: neuromuscular junction

text: Homo sapiens

text: Sample 2 ALS neuro-muscular junction


name: E-MTAB-7073:Sample 3 ALS neuro-muscular junction

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: adult

text: sporadic amyotrophic lateral sclerosis

text: mixed pool of 45 donors

text: Homo sapiens

text: Homo sapiens

text: muscle tissue

characteristic: organism part

text: neuromuscular junction

text: Homo sapiens

text: Sample 3 ALS neuro-muscular junction


E-MTAB-7073:Sample 4 ALS blood

text: public

characteristic: INSDC status

text: E-MTAB-7073:Sample 4 ALS blood

text: ArrayExpress

text: human

characteristic: description

text: adult

text: sporadic amyotrophic lateral sclerosis

text: mixed pool of 45 donors

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 4 ALS blood

characteristic: title


E-MTAB-7073:Sample 5 ALS blood

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-7073:Sample 5 ALS blood

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: sporadic amyotrophic lateral sclerosis

text: mixed pool of 45 donors

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 5 ALS blood


E-MTAB-7073:Sample 6 ALS blood

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7073:Sample 6 ALS blood

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: sporadic amyotrophic lateral sclerosis

text: mixed pool of 45 donors

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 6 ALS blood


name: E-MTAB-7073:Sample 7 control healthy blood

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: normal

text: mixed pool of 25 donors

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 7 control healthy blood


name: E-MTAB-7073:Sample 8 control healthy blood

characteristic: ENA-LAST-UPDATE

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: adult

text: normal

characteristic: disease

text: mixed pool of 25 donors

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 8 control healthy blood


text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Enterococcus faecium

text: Enterococcus faecium


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Freie Universitat Berlin Institut fur Biologie-Mikrobiologie

text: ArrayExpress

text: Protocols: Strain cultivation was performed in RPMI1640 medium (Lonza) under vigorous agitation at 37°C in triplicate until cells have reached an optical density at 500 nm of 0.5. S. aureus cells were harvested before and 30 min after exposure to 4.5 µg/ml AgXX373 Strain cultivation was performed in RPMI1640 medium (Lonza) under vigorous agitation at 37°C in triplicate until cells have reached an optical density at 500 nm of 0.5. S. aureus cells were harvested before and 30 min after exposure to 4.5 µg/ml AgXX373. S. aureus cells with an optical density at 500 nm of 0.5 were treated 30 min 4.5 µg/ml AgXX373 RNA isolation was performed using the phenol-chloroform-isoamylalcohol approach. After precipitation with 3 M sodium acetate and isopropanol, the total RNA was washed with cold ethanol and the pellet was solved in sterile water. Initially RNA quality was checked by Trinean Xpose (Gentbrugge,Belgium) and Agilent RNA Nano 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Samples contaminated with DNA were treated with DNase (Qiagen), cleaned as described above and rechecked by Xpose and Agilent Bioanalyzer. Finally RNA was free of DNA with an RNA Integrity Number (RIN) > 9 and rRNA Ratio [23s / 16s] > 1.5 Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the ribosomal RNA molecules from the isolated total RNA. Removal of rRNA was checked by Agilent RNA Pico 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). RNA was free of detectable rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was used to prepare cDNA libraries.

characteristic: description

text: wild type genotype

characteristic: genotype

text: RPMI1640 medium

characteristic: growth condition

text: Staphylococcus aureus subsp. aureus USA300

characteristic: organism

characteristic: strain

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Freie Universitat Berlin Institut fur Biologie-Mikrobiologie

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: RPMI1640 medium


text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: subject id

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Uniklinik Koln, Klinik II fur Innere Medizin Nephrolab Cologne, CECAD

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: kidney cortex tubule cell

characteristic: cell type

text: house mouse

text: Protocols: 4 week old mice were sacrificed and DBA-positive renal tubules were isolated as previously described (Outeda, P.et al. Kidney international, 92(5), 1130-1144 (2017). & Dafinger, C. et al. Experimental & molecular medicine, 50(6), 75 (2018).). Total RNA was isolated from the DBA enriched fraction by using RNA using phenol-chloroform extraction. All the RNA samples were further treated with DNAse to eliminate genomic DNA contamination as per manufacture's instruction (Quick RNA kit, Zymoresearch). For RNAseq, libraries were prepared using TruSeq stranded mRNA kit (Illumina) according to the provider's protocol.

text: Nephronophthisis

characteristic: disease

text: Aatf homozygous knockout

text: Mus musculus

text: Mus musculus

text: proximal tubule

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Uniklinik Koln, Klinik II fur Innere Medizin Nephrolab Cologne, CECAD

text: public

characteristic: SRA accession

text: ArrayExpress

text: kidney cortex tubule cell

text: house mouse

characteristic: description

text: Nephronophthisis

text: Aatf homozygous knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: proximal tubule

text: Mus musculus

text: female

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: kidney cortex tubule cell

text: house mouse

characteristic: common name

text: Nephronophthisis

text: Aatf homozygous knockout

text: Mus musculus

text: Mus musculus

text: proximal tubule

text: Mus musculus

text: male


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: age

text: ArrayExpress

characteristic: broker name

text: kidney cortex tubule cell

characteristic: cell type

text: house mouse

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: proximal tubule

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: public

characteristic: SRA accession

text: ArrayExpress

text: kidney cortex tubule cell

text: house mouse

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: proximal tubule

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: malaria parasite P. falciparum

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: subject id

characteristic: title


text: University of Oxford

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Oxford

characteristic: Submitter Id

text: 12 to 14

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: Protocols: Cells were isolated from mouse strain C57BL/6.Alpk1em2Wts bone marrow of Alpk1+/- and Alpk1-/- (mixture of bone marrows from three mice per genotype) and plated in BMDM differentiation medium (RPMI, 10% FCS, penicillin and streptomycin, 50 micro beta-mercapthoethanol, 20 ng/ml recombinant mouse GM-CSF(Peprotech)), 7 million cells in per 10 sm uncoated TC dish in 10 ml of medium for eight days, extra 10 ml of medium was added to plates at day 4, before collection and replating in 96-well plates, 150 thousand cells/200 microliters of differentiation medium per well in technical triplicates per genotype/stimulation condition (R1-R3 labels of the samples). The following day BMDMs were stimulated with MOI of 10 of Hh and 10ng/ml of mouse IFNg (Peprotech) (Alpk1+/- BMDMs - het _Hh_8h vs Alpk1-/- BMDMs - alpk1_Hh_8h) or IFNg only (het _nonstim_8h vs alpk1_nonstim_8h) before lysis for RNA extraction. RNA extraction was done using Quick-RNA kit from Zymo Research according to the manufacturer's protocol. Purified RNA was resuspended in RNAase free water and snap-frozen before submitting for library construction and sequencing. The mRNA fractions were selected using Illumina TruSeq stranded mRNA kit. The selection was done using oligodT beads from the total RNA provided before conversion to cDNA. Second strand cDNA synthesis incorporated dUTP. The cDNA were end-repaired, A-tailed and adapter-ligated. Prior to amplification, samples underwent uridine digestion. The prepared libraries were size selected, multiplexed and QC’ed before paired end sequencing over one lane of a flow cell.

text: Alpk1 homozygous knockout

characteristic: genotype

text: mixed pool of 3 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: bone marrow

text: Alpk1 homozygous knockout

characteristic: phenotype

text: Mus musculus

text: male

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Oxford

text: public

characteristic: SRA accession

text: 12 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: description

text: Alpk1 homozygous knockout

text: mixed pool of 3 mice

text: Helicobacter hepaticus

characteristic: infect

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: Alpk1 homozygous knockout

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: University of Oxford

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 12 to 14

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: Alpk1 heterozygous knockout

text: mixed pool of 3 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: wild type phenotype

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: University of Oxford

text: public

characteristic: Submitter Id

text: 12 to 14

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: Alpk1 heterozygous knockout

characteristic: genotype

text: mixed pool of 3 mice

characteristic: individual

text: Helicobacter hepaticus

text: Mus musculus

text: Mus musculus

text: bone marrow

text: wild type phenotype

characteristic: phenotype

text: Mus musculus

text: male

characteristic: strain


Desulfatiglans sp. IK1

text: Genoscope CEA

text: public

characteristic: SRA accession

text: Desulfatiglans sp. IK1

tag: Namespace:Genoscope CEA

text: Yes

characteristic: environmental sample

characteristic: isolate

text: Asphalt lake (Pitch Lake, Trinidad and Tobago)

characteristic: isolation source

text: uncultured Desulfatiglans sp.

text: uncultured Desulfatiglans sp.

text: Genome sequencing of uncultured Desulfatiglans sp. IK1


text: Lactobacillus paracasei

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Lactobacillus paracasei

text: Lactobacillus paracasei

text: Lactobacillus paracasei

characteristic: subject id


name: candidate division Zixibacteria bacterium IK1

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Genoscope CEA

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Yes

characteristic: organism

characteristic: title


text: UNIVERSITY OF COLOGNE

text: public

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: not provided

characteristic: country

text: Enterococcus faecium

text: Enterococcus faecium


uncultured Spirochaetes bacterium IK1

text: Genoscope CEA

text: public

characteristic: SRA accession

text: uncultured Spirochaetes bacterium IK1

text: Yes

characteristic: environmental sample

characteristic: isolate

text: uncultured Spirochaetes bacterium

text: uncultured Spirochaetes bacterium

text: uncultured Spirochaetes bacterium IK1


uncultured Paludibacter sp. IK1

characteristic: ENA-CHECKLIST

text: Genoscope CEA

text: public

text: uncultured Paludibacter sp. IK1

text: Trinidad and Tobago:Pitch Lake

text: Yes

text: Asphalt lake

characteristic: isolation source

text: uncultured Paludibacter sp.

text: uncultured Paludibacter sp.

text: uncultured Paludibacter sp. IK1


characteristic: ENA-LAST-UPDATE

text: NEWCASTLE UNIVERSITY, UK

characteristic: INSDC center name

text: public

tag: Namespace:NEWCASTLE UNIVERSITY, UK

text: human

characteristic: common name

text: DNA from FFPE treated colorectal cancer tissue sample was extracted to carry out whole exome sequencing. Specifically, the analysis was aimed at detecting the presence of pathogenic somatic mutations in the 4 mismatch repair genes. Library prep and capture was carried out using Illumina TruSeq Rapid Exome Kit and the amplicons were sequenced on Illumina NovaSeq.

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Colorectal cancer

characteristic: tissue type

text: Whole exome sequencing of FFPE treated colorectal cancer tissue


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Wellcome Sanger Institute

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: induced pluripotent stem cell

characteristic: cell type

text: human

text: Protocols: Cells were treated with Accutase and, once obtained single cells, were filtered (40um strainers), counted and resuspended in PBS/BSA (at 1%) at 10^6/mL to sort them into 384-well plates (containing the lysis buffer and ERCCs). The hiPSC line FSPS13B was plated on vitronectin coated plates (10µg/ml, Stem Cell Technologies) and cultured in E6 media supplemented with 2ng/ml TGF-β (R&D) and 25ng/ml FGF2 making complete E8 media. Cells were maintained by weekly passaging using 0.5mM EDTA (Thermo Fisher Scientific). hiPSC colonies were treated with DMSO or 100ng/ml nocodazole for 16 hours. Following synchronisation, cells were maintained in pluripotency conditions or induced to form definitive endoderm using a 3-day protocol. On day 1 cells were cultured in CDM-PVA supplemented with 80ng/ml FGF2, 10µM LY294002, 10ng/ml BMP4, 100ng/ml Activin A and 3µM CHIR99021. On day 2 the cells were cultured in CDM-PVA supplemented with 80ng/ml FGF2, 10µM LY294002, 10ng/ml BMP4 and 100ng/ml Activin A. On day 3 the cells were cultured in RPMI-B27 media supplemented with 80ng/ml FGF2 and 100ng/ml Activin. Conversion was performed following the SMART-Seq2 protocol (https://www.nature.com/articles/nprot.2014.006) using a poly-Dt30 oligo and a TSO oligo. RNA extraction is based on the Picelli et al SS2 protocol, using a polydT primer plus the template switching oligo - TSO, as published (https://www.nature.com/articles/nprot.2014.006). Cell sorting and library preparation was carried out by the sequencing core facility at the Wellcome Sanger Institute. Single hPSCs were isolated into 384 wells plates and libraries were prepared for 120 cells/per condition using the SMART-Seq2 protocol (https://www.nature.com/articles/nprot.2014.006) and using Nextera XT DNA Library Preparation Kit - Illumina. A constant amount of spike-in RNA from the External RNA Controls Consortium (ERCC) was also added to the lysis buffer prior to sorting.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: normal culture to maintain pluripotency

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: blood cell

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: sex

text: synchronization

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: induced pluripotent stem cell

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: normal culture to maintain pluripotency

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: blood cell

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: induced pluripotent stem cell

characteristic: cell type

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: endoderm differentiation

text: Homo sapiens

text: Homo sapiens

text: blood

text: blood cell

text: Homo sapiens

text: male

text: synchronization


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Wellcome Sanger Institute

characteristic: INSDC center name

text: public

text: ArrayExpress

text: induced pluripotent stem cell

text: human

text: adult

text: normal

text: wild type genotype

characteristic: genotype

text: endoderm differentiation

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: blood cell

characteristic: progenitor cell type

text: Homo sapiens

text: male

characteristic: sex


Illumina

characteristic: ENA-FIRST-PUBLIC

text: PHE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Illumina

characteristic: Submitter Id

text: Campylobacter jejuni

characteristic: description

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

text: Illumina

characteristic: title


characteristic: External Id

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Not provided

text: Not provided

characteristic: clinical signs

characteristic: collection date

text: post-colonoscopy

text: stool sample T.LS.7.11.15B

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:La Jolla

characteristic: geo loc name

characteristic: height

text: centimeters

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: LS

characteristic: host subject id

characteristic: host taxid

text: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Not provided

text: Not provided

text: Not provided

text: human gut metagenome

text: UCSDMI

text: TRUE

characteristic: prep

text: TRUE

characteristic: public

text: Host-associated

text: Animal

text: Animal distal gut

text: feces

characteristic: sample type

text: human gut metagenome

text: Not provided

text: Not provided

text: male

text: IBD time series

text: Not provided

characteristic: weight

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: years

characteristic: age unit

characteristic: anonymized name

text: Not provided

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Not provided

text: Not provided

characteristic: clinical signs

characteristic: collection date

text: post-colonoscopy

text: stool sample T.LS.7.14.15B

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

text: human-associated habitat

text: human-gut

text: feces

text: USA:CA:La Jolla

text: centimeters

text: human

text: Homo sapiens

text: LS

text: Not provided

text: adult

text: Not provided

text: Not provided

text: Not provided

text: human gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: TRUE

text: Host-associated

text: Animal

text: Animal distal gut

text: feces

text: human gut metagenome

text: Not provided

text: Not provided

text: male

characteristic: sex

characteristic: title

text: IBD time series

text: Not provided

text: kg


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: years

text: Not provided

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Not provided

text: Not provided

text: post-colonoscopy

text: stool sample T.LS.7.8.15

text: TRUE

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: USA:CA:La Jolla

characteristic: geo loc name

characteristic: height

text: centimeters

text: human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

text: LS

characteristic: host subject id

characteristic: host taxid

text: Not provided

characteristic: latitude

text: adult

characteristic: life stage

characteristic: longitude

text: Not provided

text: Not provided

text: Not provided

text: human gut metagenome

text: UCSDMI

text: TRUE

characteristic: prep

text: TRUE

characteristic: public

text: Host-associated

text: Animal

text: Animal distal gut

text: feces

characteristic: sample type

text: human gut metagenome

text: Not provided

text: Not provided

text: male

text: IBD time series

text: Not provided

characteristic: weight

text: kg


fecal samples1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: fecal samples1

tag: Namespace:UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mus musculus

text: 16s rDNA analysis and viral metagenomics

characteristic: title


fecal samples2

text: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA

text: public

text: fecal samples2

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples3

text: public

text: fecal samples3

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples4

text: public

text: fecal samples4

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples5

text: public

text: fecal samples5

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples6

text: public

text: fecal samples6

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples7

text: public

text: fecal samples7

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples8

text: public

text: fecal samples8

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples9

text: public

text: fecal samples9

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples10

text: public

text: fecal samples10

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples11

text: public

text: fecal samples11

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples12

text: public

text: fecal samples12

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples13

text: public

text: fecal samples13

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples14

text: public

text: fecal samples14

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples15

text: public

text: fecal samples15

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples16

text: public

text: fecal samples16

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples17

text: public

text: fecal samples17

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples18

text: public

text: fecal samples18

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples19

text: public

text: fecal samples19

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples20

text: public

text: fecal samples20

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples21

text: public

text: fecal samples21

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples22

text: public

text: fecal samples22

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples23

text: public

text: fecal samples23

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples24

text: public

text: fecal samples24

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples25

text: public

text: fecal samples25

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples26

text: public

text: fecal samples26

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples27

text: public

text: fecal samples27

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples28

text: public

text: fecal samples28

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples29

text: public

text: fecal samples29

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples30

text: public

text: fecal samples30

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples31

text: public

text: fecal samples31

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples32

text: public

text: fecal samples32

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples33

text: public

text: fecal samples33

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples34

text: public

text: fecal samples34

text: house mouse

text: Mus musculus

text: Mus musculus


fecal samples35

text: public

text: fecal samples35

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample12

text: public

text: fecal sample12

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample13

text: public

text: fecal sample13

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample14

text: public

text: fecal sample14

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample16

text: public

text: fecal sample16

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample17

text: public

text: fecal sample17

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample18

text: public

text: fecal sample18

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample19

text: public

text: fecal sample19

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample20

text: public

text: fecal sample20

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample21

text: public

text: fecal sample21

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample22

text: public

text: fecal sample22

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample23

text: public

text: fecal sample23

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample24

text: public

text: fecal sample24

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample25

text: public

text: fecal sample25

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample26

text: public

text: fecal sample26

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample27

text: public

text: fecal sample27

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample28

text: public

text: fecal sample28

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample29

text: public

text: fecal sample29

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample30

text: public

text: fecal sample30

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample31

text: public

text: fecal sample31

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample32

text: public

text: fecal sample32

text: house mouse

text: Mus musculus

text: Mus musculus


fecal sample15

text: public

text: fecal sample15

text: house mouse

text: Mus musculus

text: Mus musculus


text: THE UNIVERSITY OF ADELAIDE

text: public

tag: Namespace:THE UNIVERSITY OF ADELAIDE

text: Candidatus Defluviicoccus seviourii

text: Candidatus Defluviicoccus seviourii

text: Genome annotation of Candidatus Defluviicoccus seviourii


text: THE UNIVERSITY OF ADELAIDE

text: public

text: uncultured Defluviicoccus sp.

text: uncultured Defluviicoccus sp.

text: Genome annotation of strain PRM01


text: public

tag: Namespace:ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Sus scrofa

characteristic: host scientific name

text: Salmonella enterica subsp. enterica serovar Choleraesuis

characteristic: isolate

text: Animal

characteristic: isolation source

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Choleraesuis

characteristic: serovar


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO ZOOPROFILATTICO SPERIMENTALE DELLE VENEZIE

text: public

text: Italy

text: diseased

text: Sus scrofa

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Choleraesuis


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Italy

text: healthy

text: Sus scrofa

text: Animal

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Choleraesuis


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Italy

text: diseased

text: Sus scrofa domesticus

text: Animal

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Choleraesuis


text: public

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Choleraesuis

characteristic: title


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


characteristic: ENA-CHECKLIST

text: ED

text: public

text: cortical cells

characteristic: cell type

text: house mouse

text: A control with only one copy of Pax6 deleted. Tamoxifen is still administrated at E9.5 to activate Cre-ERT2 with EGFP reporter

characteristic: description

characteristic: dev stage

text: Mus musculus

text: Mus musculus

characteristic: strain

text: Pax6-floxed heterogenous control


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ED

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: cortical cells

text: house mouse

text: A tamoxifen-induced conditional knockout of Pax6. Tamoxifen is administrated at E9.5 to activate Cre-ERT2 with EGFP reporter in Emx-1-positive cortical cells

text: Mus musculus

text: Mus musculus

text: Pax6-floxed homogenous mutant


text: UNIVERSITY OF EDINBURGH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF EDINBURGH

characteristic: Submitter Id

text: viral metagenome

text: viral metagenome

characteristic: organism

text: viral metagenome


text: mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: collection date

text: R 4.19 18.04.2017 control

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: 341f (CCTACGGGNGGCWGCAG), 785r (GACTACHVGGGTATCTAAKCC)

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

unit: °C

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: R 4.20 18.04.2017 NH3

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

text: public

characteristic: collection date

text: R 4.21 18.04.2017 NH3+HCL

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.19 09.05.2017 control

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.20 09.05.2017 NH3

characteristic: description

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.21 09.05.2017 NH3+HCL

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.19 26.05.2017 control

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.20 26.05.2017 NH3

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.21 26.05.2017 NH3+HCL

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.20 12.06.2017 NH3

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.21 12.06.2017 NH3+HCL

characteristic: description

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.20 19.06.2017 NH3

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.21 19.06.2017 NH3+HCL

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.20 26.06.2017 NH3

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.21 26.06.2017 NH3+HCL

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.20 30.06.2017 NH3

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.21 30.06.2017 NH3+HCL

characteristic: description

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.20 06.07.2017 NH3

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: R 4.21 06.07.2017 NH3+HCL

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: R 4.21 10.07.2017 NH3+HCL

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4.21 01.09.2016 start high NH4

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4.21 17.10.2016 plus HCL

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4.21 13.12.2016 without HCL

characteristic: description

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4.19 11.01.2016 continuous feeding

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4.21 11.01.2016 discontinuous feeding

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4.19 09.03.2016 continuous feeding

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4.21 09.03.2016 discontinuous feeding

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4.19 20.04.2016 continuous feeding

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4.19 28.04.2016 continuous feeding

characteristic: description

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4.21 28.04.2016 discontinuous feeding

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: uncultured bacterium

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 4.19 13.06.2016 continuous feeding

characteristic: description

text: Anaerobic digester

text: anoxic, mesophilic (37°C)

text: digestate from biogas reactor

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: pcr primers

text: ammonia inhibition

characteristic: project name

characteristic: sample storage temperature

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

characteristic: sequencing method

text: 16S rRNA gene

characteristic: target gene


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4.21 13.06.2016 continuous feeding

text: Anaerobic digester

characteristic: environment (biome)

text: anoxic, mesophilic (37°C)

characteristic: environment (feature)

text: digestate from biogas reactor

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: ammonia inhibition

text: uncultured bacterium

text: Illumina MiSeq v3 2x300bp

text: 16S rRNA gene


tek 3-1

characteristic: ENA-CHECKLIST

text: CREA-ORT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: tek 3-1

characteristic: Submitter Id

characteristic: collection date

text: Teku kana

characteristic: description

text: Teku kana

text: Teku kana

text: Litter

text: Italy

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: tek 3

characteristic: title


tek 3-2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: tek 3-2

text: Teku kana

text: Teku kana

characteristic: environment (biome)

text: Teku kana

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiomes

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: tek 3


tek 3-3

characteristic: ENA-CHECKLIST

text: CREA-ORT

text: public

characteristic: INSDC status

characteristic: SRA accession

text: tek 3-3

characteristic: Submitter Id

characteristic: collection date

text: Teku kana

characteristic: description

text: Teku kana

text: Teku kana

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

text: tek 3


tek 3-4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: tek 3-4

text: Teku kana

text: Teku kana

text: Teku kana

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: tek 3

characteristic: title


tek 4-1

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: tek 4-1

characteristic: Submitter Id

text: Teku kana

text: Teku kana

characteristic: environment (biome)

text: Teku kana

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiomes

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: tek 4


tek 4-2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: tek 4-2

characteristic: collection date

text: Teku kana

characteristic: description

text: Teku kana

text: Teku kana

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

text: tek 4


tek 4-3

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: tek 4-3

text: Teku kana

text: Teku kana

text: Teku kana

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: tek 4

characteristic: title


tek 4-4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: tek 4-4

characteristic: Submitter Id

text: Teku kana

text: Teku kana

characteristic: environment (biome)

text: Teku kana

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiomes

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: tek 4


tek 9-1

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: tek 9-1

characteristic: collection date

text: Teku kana

characteristic: description

text: Teku kana

text: Teku kana

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

text: tek 9


tek 9-2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: tek 9-2

text: Teku kana

text: Teku kana

text: Teku kana

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: tek 9

characteristic: title


tek 9-3

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: tek 9-3

characteristic: Submitter Id

text: Teku kana

text: Teku kana

characteristic: environment (biome)

text: Teku kana

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiomes

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: tek 9


tek 9-4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: tek 9-4

characteristic: collection date

text: Teku kana

characteristic: description

text: Teku kana

text: Teku kana

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

text: tek 9


characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Compost tea

text: Compost tea

text: Compost tea

text: Compost

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiomes

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Compost tea

text: Compost tea

characteristic: environment (biome)

text: Compost tea

characteristic: environment (feature)

text: Compost

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiome

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil


Litter n3 a

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Litter n3 a

characteristic: collection date

text: Litter

characteristic: description

text: Soil forest

text: Litter

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

text: Litter n3


Litter n3 b

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: Litter n3 b

text: Litter

text: Soil forest

text: Litter

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: Litter n3

characteristic: title


Litter n4 a

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Litter n4 a

characteristic: Submitter Id

text: Litter

text: Soil forest

characteristic: environment (biome)

text: Litter

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiome

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: Litter n4


Litter n4 b

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: Litter n4 b

characteristic: collection date

text: Litter

characteristic: description

text: Soil forest

text: Litter

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

text: Litter n4


Litter n4 c

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Litter n4 c

text: Litter

text: Soil forest

text: Litter

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: Litter n4

characteristic: title


Litter n4 d

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Litter n4 d

characteristic: Submitter Id

text: Litter

text: Soil forest

characteristic: environment (biome)

text: Litter

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiome

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: Litter n4


Litter n9 a

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Litter n9 a

characteristic: collection date

text: Litter

characteristic: description

text: Soil forest

text: Litter

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

text: Litter n9


Litter n9 b

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: Litter n9 b

text: Litter

text: Soil forest

text: Litter

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: Litter n9

characteristic: title


Litter n9 c

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Litter n9 c

characteristic: Submitter Id

text: Litter

text: Soil forest

characteristic: environment (biome)

text: Litter

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiome

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: Litter n9


Litter n9 d

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

text: Litter n9 d

characteristic: collection date

text: Litter

characteristic: description

text: Soil forest

text: Litter

text: Litter

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: metagenome

text: compost metagenome

characteristic: organism

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

text: Litter n9


Litter n3 c

characteristic: ENA-CHECKLIST

text: CREA-ORT

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Litter n3 c

text: Litter

text: Soil forest

text: Litter

text: Litter

text: Italy

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: compost metagenome

text: Soil amendment microbiome

text: compost metagenome

text: Amplicon

text: soil

characteristic: soil environmental package

text: Litter n3

characteristic: title


Litter n3 d

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CREA-ORT

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: Litter n3 d

characteristic: Submitter Id

text: Litter

text: Soil forest

characteristic: environment (biome)

text: Litter

characteristic: environment (feature)

text: Litter

text: Italy

text: metagenome

text: compost metagenome

text: Soil amendment microbiome

characteristic: project name

text: compost metagenome

text: Amplicon

characteristic: sequencing method

text: soil

text: Litter n3


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: subject id


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IP

text: public

characteristic: collection date

text: Invasive strain isolated from a blood culture

characteristic: description

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Blood culture

characteristic: isolation source

text: Streptococcus pyogenes

text: Streptococcus pyogenes

characteristic: serovar

characteristic: strain

text: Streptococcus pyogenes emm1 strain S119

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UPSC

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

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characteristic: Submitter Id

text: thale cress

text: Col-0 wild-type 4 hours post infestation plants - biological replicate number 1 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UPSC

text: public

characteristic: INSDC status

text: thale cress

characteristic: common name

text: Col-0 wild-type 4 hours post infestation plants - biological replicate number 1 technical replicate number 2

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type 4 hours post infestation plants - biological replicate number 2 technical replicate number 1

characteristic: description

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type 4 hours post infestation plants - biological replicate number 2 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

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text: Col-0 wild-type 4 hours post infestation plants - biological replicate number 3 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type 4 hours post infestation plants - biological replicate number 3 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

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text: Col-0 wild-type 8 hours post infestation plants - biological replicate number 1 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type 8 hours post infestation plants - biological replicate number 1 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

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text: Col-0 wild-type 8 hours post infestation plants - biological replicate number 2 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

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text: Col-0 wild-type 8 hours post infestation plants - biological replicate number 2 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

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text: Col-0 wild-type 8 hours post infestation plants - biological replicate number 3 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type 8 hours post infestation plants - biological replicate number 3 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type control plants - biological replicate number 1 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type control plants - biological replicate number 1 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type control plants - biological replicate number 2 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type control plants - biological replicate number 2 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type control plants - biological replicate number 3 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: Col-0 wild-type control plants - biological replicate number 3 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 4 hours post infestation plants - biological replicate number 1 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 4 hours post infestation plants - biological replicate number 1 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 4 hours post infestation plants - biological replicate number 2 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 4 hours post infestation plants - biological replicate number 2 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 4 hours post infestation plants - biological replicate number 3 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 4 hours post infestation plants - biological replicate number 3 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 8 hours post infestation plants - biological replicate number 1 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 8 hours post infestation plants - biological replicate number 1 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 8 hours post infestation plants - biological replicate number 2 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 8 hours post infestation plants - biological replicate number 2 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 8 hours post infestation plants - biological replicate number 3 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant 8 hours post infestation plants - biological replicate number 3 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant control plants - biological replicate number 1 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant control plants - biological replicate number 1 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant control plants - biological replicate number 2 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant control plants - biological replicate number 2 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant control plants - biological replicate number 3 technical replicate number 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: UPSC

text: public

text: thale cress

text: pae9-2 mutant control plants - biological replicate number 3 technical replicate number 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana


text: public

tag: Namespace:SciLifeLab, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 21 Stockholm, Sweden

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: Glioblastoma cell lines cultured in vitro PROX1 transduction in U-343 MG was performed using commercial lentiviral particles. Cells were selected using Puromycin. PROX1 stable knockdown in cell line U-343-MGa was performed using lentiviral particles produced in house. Lentiviral vectors were transduced in HEK-293T cells using calcium-phosphate co-transfection. 24 hours after transfection supernantants were collected two times within 24-hour interval, filtered and then used to infect U-343 MGa cells. Cell were further selected with Puromycin antibiotic. Total RNA was purified using the PureLink® kit following the manufacturer’s instructions (Thermo Fisher Scientific) Illumina TruSeq Stranded mRNA with Poly-A selection

text: glioblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: wild type phenotype

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text: Homo sapiens


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

text: SciLifeLab, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 21 Stockholm, Sweden

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: epithelial cell

text: human

text: glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: wild type phenotype

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

text: glioblastoma

text: lentiviral overexpression of PROX1

text: Homo sapiens

text: Homo sapiens

text: brain

text: overexpression of PROX1

text: Homo sapiens


text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: common name

characteristic: description

text: glioblastoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: shRNA knockdown of PROX1

text: shRNA against PROX1 mRNA

characteristic: rna interference

text: Homo sapiens


text: HOSPITAL SIRIO LIBANES

text: public

tag: Namespace:HOSPITAL SIRIO LIBANES

text: human

text: Homo sapiens

text: Homo sapiens

text: mesenchymal glioma stem cells


text: UNIVERSITY OF CAMBRIDGE

text: public

tag: Namespace:UNIVERSITY OF CAMBRIDGE

characteristic: collection date

text: Boreal

characteristic: environment (biome)

text: Lake

characteristic: environment (feature)

text: Sediment

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: freshwater sediment metagenome

text: Microbial community assembly in lake sediments

characteristic: project name

text: freshwater sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Amplicon sequencing (2x300bp, MiSeq)

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: Submitter Id

text: Herpes simplex virus type 1

characteristic: common name

text: native RNA sequencing using nanopore minion on RNA collected from NHDFs infected for 18 hrs with HSV-1 strain Patton (Us11-GFP) at an MOI of 3

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

characteristic: title


text: public

tag: Namespace:MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS

text: house mouse

text: MOF-KO Single Cell

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: MOF-KO Single Cell


text: MAX PLANCK INSTITUTE OF IMMUNOBIOLOGY AND EPIGENETICS

text: public

text: house mouse

text: MOF-KO Single Cell

text: Mus musculus

text: Mus musculus

text: MOF-KO Single Cell


text: public

text: house mouse

text: Control Single Cell

text: Mus musculus

text: Mus musculus

text: Control Single Cell


text: public

text: house mouse

text: K311R LMNA Single Cell

text: Mus musculus

text: Mus musculus

text: K311R LMNA Single Cell


text: HOSPITAL SIRIO LIBANES

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: proneural glioma stem cells


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00096


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00098


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00101


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00109


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00115


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00116


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00117


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00119


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00181


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00185


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00267


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00273


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00277


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00280


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00284


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00351


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00358


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00366


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00369


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00371


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00372


text: Counsyl

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Coriell HG00448