text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), rhizospheric soil replicate 3

text: rhizosphere metagenome

text: rhizosphere metagenome


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA (INRA Rennes)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INRA (INRA Rennes)

characteristic: Submitter Id

text: 18S, date T2, Non Inoculated (by P.brassicae), rhizospheric soil replicate 1

characteristic: description

text: rhizosphere metagenome

characteristic: organism

text: rhizosphere metagenome

characteristic: title


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Non Inoculated (by P.brassicae), rhizospheric soil replicate 2

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Non Inoculated (by P.brassicae), rhizospheric soil replicate 3

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), rhizospheric soil replicate 1

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), rhizospheric soil replicate 2

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), rhizospheric soil replicate 3

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Non Inoculated (by P.brassicae), rhizospheric soil replicate 1

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Non Inoculated (by P.brassicae), rhizospheric soil replicate 2

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Non Inoculated (by P.brassicae), rhizospheric soil replicate 3

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), rhizospheric soil replicate 1

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), rhizospheric soil replicate 2

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), rhizospheric soil replicate 3

text: rhizosphere metagenome

text: rhizosphere metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), bulk soil replicate 1

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), bulk soil replicate 2

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), bulk soil replicate 3

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), bulk soil replicate 1

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), bulk soil replicate 2

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), bulk soil replicate 3

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), bulk soil replicate 1

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), bulk soil replicate 2

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), bulk soil replicate 3

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Inoculated (by P.brassicae), bulk soil replicate 1

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Inoculated (by P.brassicae), bulk soil replicate 2

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Inoculated (by P.brassicae), bulk soil replicate 3

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Inoculated (by P.brassicae), bulk soil replicate 1

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Inoculated (by P.brassicae), bulk soil replicate 2

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Inoculated (by P.brassicae), bulk soil replicate 3

text: soil metagenome

text: soil metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T1, Non Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Non Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Non Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T2, Non Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T3, Non Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Non Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Non Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T4, Non Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), root replicate 1

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), root replicate 2

text: root metagenome

text: root metagenome


text: INRA (INRA Rennes)

text: public

text: 18S, date T5, Non Inoculated (by P.brassicae), root replicate 3

text: root metagenome

text: root metagenome


text: AIT

text: public

characteristic: collection date

text: Multidrug-resistant Escherichia coli isolated from urine in Pula, Croatia. Strain also carrying following resistances: TEM-q, qnrB

text: Croatia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urine, urology

characteristic: isolation source

text: 44.8658 N 13.8572 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

text: Multidrug-resistant Escherichia coli isolate from Pula, Croatia


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AIT

text: public

text: Multidrug-resistant Klebsiella pneumoniae isolate from Osijek, Croatia

text: Croatia

text: diseased

text: Homo sapiens

text: OS 2

text: blood, gastroenterology

text: 45.5578 N 18.7155 E

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: AIT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Multidrug-resistant Klebsiella pneumoniae isolated from catheter urine in Osijek, Croatia. ESBL strain also carrying following resistances: SHV-1, TEM-1, CTX-M-15

text: Croatia

text: diseased

text: Homo sapiens

text: OS 8

text: catheter urine, neurosurgery

text: 45.5578 N 18.7155 E

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Multidrug-resistant Klebsiella pneumoniae isolate from Osijek, Croatia; ESBL


text: NCGR

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: spelt

characteristic: common name

text: Triticum spelta

characteristic: organism

text: Triticum spelta


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHMtest_0517385d-6a04-4cc6-8f36-8f697c8ca233

tag: Namespace:Public Health Agency of Sweden

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSIDAD DE CANTABRIA

text: public

tag: Namespace:UNIVERSIDAD DE CANTABRIA

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Institute of Microbiology of the Czech Academy of Sciences, v.v.i.

text: Czech Republic

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Bordetella pertussis

characteristic: isolate

text: respiratory tract

characteristic: isolation source

text: Bordetella pertussis

text: Bordetella pertussis

characteristic: strain

text: Recent clinical B. pertussis isolates from the Czech Republic


text: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Czech Republic

text: diseased

text: Homo sapiens

text: Bordetella pertussis

text: respiratory tract

text: Bordetella pertussis

text: Bordetella pertussis


characteristic: ENA checklist

text: SSI

text: public

text: Statens Serum Institute

characteristic: collected by

characteristic: collection date

text: No

characteristic: environmental sample

text: Denmark

characteristic: geographic location

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: not collected

text: Homo Sapiens

text: Yes

characteristic: is the sequenced pathogen host associated?

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Agona

characteristic: serovar


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT0.2_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

unit: µmol/L

characteristic: Nox

text: 8734:dd9bf50b-64cf-4be3-9a80-18d39b289d50

tag: Namespace:Leibniz Centre for Tropical Marine Research

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: description

characteristic: dissolved organic carbon

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

text: mimarks-survey

characteristic: investigation type

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

unit: µg/L

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

characteristic: phosphate

text: AWA funding no. 01DG12073B; ACUTE Leibniz association funding no: SAW-2015-ZMT-4

characteristic: project name

unit: practical salinity unit

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

unit: ºC

characteristic: temperature

characteristic: title

characteristic: total particulate carbon

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.1_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leibniz Centre for Tropical Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8735:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

unit: µmol/kg

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

unit: mg Chla/m3

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: turbidity

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.1_200

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8736:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

text: area of open water [ENVO:01000666]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.1_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8737:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

text: GFBIO

characteristic: carbon/nitrogen ratio

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.4_Eddy_200

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8738:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.4_Eddy_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8739:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

text: marine biome [ENVO:00000447]

text: area of open water [ENVO:01000666]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.4_Eddy_Sur

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8740:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.7_Sur_UW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8741:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

text: marine biome [ENVO:00000447]

text: coastal water body [ENVO:02000049]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT1.8_Sur_UW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8742:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: coastal water body [ENVO:02000049]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT2.7_Sur_UW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8743:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

text: marine biome [ENVO:00000447]

text: coastal water body [ENVO:02000049]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: AWA funding no. 01DG12073B; ACUTE Leibniz association funding no: SAW-2015-ZMT-4

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT3.8_Sur_UW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leibniz Centre for Tropical Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8744:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: coastal water body [ENVO:02000049]

text: sea water [ENVO:00002149]

text: water

characteristic: fluorescence

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT4.6_Sur_UW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8745:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

text: marine biome [ENVO:00000447]

text: Shelf

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT4.7_Sur_UW

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8746:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: coastal water body [ENVO:02000049]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT6.4_200

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8747:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

text: marine biome [ENVO:00000447]

text: Shelf

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: turbidity

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT6.4_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8748:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

text: GFBIO

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: Shelf

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT6.4_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8749:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

text: marine biome [ENVO:00000447]

text: Shelf

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT6.6_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8750:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: Shelf

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT6.7_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8751:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

text: marine biome [ENVO:00000447]

text: coastal water body [ENVO:02000049]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Mauritania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT7.8_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8752:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: coastal water body [ENVO:02000049]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Mauritania

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

text: AWA funding no. 01DG12073B; ACUTE Leibniz association funding no: SAW-2015-ZMT-4

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

characteristic: turbidity

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT7.8_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Leibniz Centre for Tropical Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8753:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

text: coastal water body [ENVO:02000049]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Senegal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT8.8_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8754:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

text: GFBIO

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: coastal water body [ENVO:02000049]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Senegal

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

characteristic: turbidity

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT8.8_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8755:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: carbon/nitrogen ratio

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

text: coastal water body [ENVO:02000049]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Senegal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

characteristic: particulate inorganic carbon

characteristic: particulate organic carbon

characteristic: particulate organic nitrogen

text: marine metagenome

text: Illumina MiSeq

text: true

characteristic: total particulate carbon

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT9.3_200

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8756:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Senegal

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

characteristic: turbidity

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT9.3_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8757:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

text: area of open water [ENVO:01000666]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Senegal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT9.3_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8758:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

text: GFBIO

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: area of open water [ENVO:01000666]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Senegal

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

characteristic: turbidity

text: water

characteristic: water environmental package


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT9.7_DCM

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8759:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

characteristic: ammonium

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine biome [ENVO:00000447]

text: coastal water body [ENVO:02000049]

characteristic: environment (feature)

text: sea water [ENVO:00002149]

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: fluorescence

text: PA

characteristic: fraction

text: Senegal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: organism

characteristic: pangaea event label

text: marine metagenome

text: Illumina MiSeq

text: true

text: water


text: water column particle-attached [on 3.0µm filter] microbial community of sampleT9.7_Sur_oligo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Nox

characteristic: SRA accession

text: 8760:dd9bf50b-64cf-4be3-9a80-18d39b289d50

characteristic: Submitter Id

text: GFBIO

characteristic: dissolved organic carbon

characteristic: dissolved oxygen

text: marine biome [ENVO:00000447]

characteristic: environment (biome)

text: coastal water body [ENVO:02000049]

text: sea water [ENVO:00002149]

text: water

text: PA

text: Senegal

text: mimarks-survey

characteristic: nitrate

characteristic: nitrite

characteristic: nitrogen/phosphate ratio

text: marine metagenome

characteristic: phosphate

characteristic: project name

characteristic: salinity

text: marine metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: silicate

text: true

characteristic: submitted to INSDC

characteristic: temperature

characteristic: title

characteristic: turbidity

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITA DEGLI STUDI DI MILANO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITA DEGLI STUDI DI MILANO

characteristic: Submitter Id

characteristic: collection date

text: Citrus sinensis

characteristic: host scientific name

text: Leaf

characteristic: isolation source

text: metagenome

characteristic: organism

text: metagenome

text: Asymptomatic leaf replicate 1


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Leaf

text: metagenome

text: metagenome

text: Asymptomatic leaf replicate 2

characteristic: title


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Leaf

text: metagenome

text: metagenome

text: Early symptomatic leaf replicate 1


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Leaf

text: metagenome

text: metagenome

text: Early symptomatic leaf replicate 2


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Leaf

text: metagenome

text: metagenome

text: Early symptomatic leaf replicate 3


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Leaf

text: metagenome

text: metagenome

text: Late symptomatic leaf replicate 1


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Leaf

text: metagenome

text: metagenome

text: Late symptomatic leaf replicate 2


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Asymptomatic root replicate 1


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Asymptomatic root replicate 2


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Early symptomatic root replicate 1


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Early symptomatic root replicate 2


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Early symptomatic root replicate 3


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Late symptomatic root replicate 1


text: UNIVERSITA DEGLI STUDI DI MILANO

text: public

text: Citrus sinensis

text: Root

text: metagenome

text: metagenome

text: Late symptomatic root replicate 2


text: MYCOBT

text: public

text: uncultured fungus

characteristic: common name

text: leaf

characteristic: description

text: beech forest

characteristic: environment (biome)

text: forest

characteristic: environment (feature)

text: leaf

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: uncultured fungus

text: EnDeco

characteristic: project name

text: uncultured fungus

text: Illumina

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MYCOBT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: uncultured fungus

text: beetle

text: beech forest

text: forest

text: leaf

text: Germany

text: host-associated

text: metagenome

text: uncultured fungus

text: EnDeco

text: uncultured fungus

text: Illumina


text: Universite Lyon1

text: public

tag: Namespace:Universite Lyon1

text: Description of a new species of Elaeagnaceae-infective Frankia strain

characteristic: description

text: Frankia sp. Ea1.12

characteristic: organism

text: Frankia sp. Ea1.12

text: Frankia moiroudii, genome sequence of a new Frankia species

characteristic: title


text: CRISPR screen

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: CRISPR screen

characteristic: phenotype

text: Mus musculus

characteristic: subject id


text: Liver

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: house mouse

text: Mus musculus

text: Liver

text: Mus musculus


text: Kidney

text: Mus musculus

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Kidney

text: Mus musculus


text: C.elegans

text: Caenorhabditis elegans

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: C.elegans

text: Caenorhabditis elegans


text: Mouse oesophagus

text: male

characteristic: ArrayExpress-SEX

text: Mus musculus

text: SC

text: public

characteristic: Submitter Id

text: house mouse

text: Male

characteristic: gender

text: Mus musculus

text: Mouse oesophagus

text: Mus musculus


text: Mouse

characteristic: ArrayExpress-PHENOTYPE

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

characteristic: organism

text: Mouse

text: Mus musculus

characteristic: title


text: FZB

text: public

text: Mycobacterium tuberculosis complex bacterium

characteristic: common name

text: WGS of MTBC isolates


text: male

text: Mus musculus musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: eastern European house mouse

text: Male

text: Mus musculus musculus

text: Mus musculus musculus

characteristic: subject id


text: Homo sapiens

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNRS

text: public

text: vegetative cells

characteristic: dev stage

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium Mating type mutant : mtB


text: CNRS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: vegetative cells

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium Mating type mutant : mtC


Paenibacillus B-LR1

text: UMR CNRS 7266

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Paenibacillus B-LR1

tag: Namespace:UMR CNRS 7266

text: Romain Chevrot

characteristic: collected by

text: jan 2015

characteristic: collection date

text: LA ROCHELLE

characteristic: isolation source

text: Paenibacillus alvei

text: Paenibacillus alvei

text: Paenibacillus B-LR genome


text: Shigella flexneri

text: SC

text: public

characteristic: Submitter Id

text: Shigella flexneri

text: Shigella flexneri

characteristic: organism

text: Shigella flexneri

characteristic: title


text: public

tag: Namespace:SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES

text: Clonostachys rosea

text: Clonostachys rosea

text: Clonostachys rosea isolate


text: SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES

text: public

text: Clonostachys rosea

text: Clonostachys rosea

text: Clonostachys rosea isolate


CBS 100000

text: public

text: CBS 100000

text: Clonostachys rosea

text: Clonostachys rosea

text: Clonostachys rosea isolate


text: public

text: Clonostachys rosea

text: Clonostachys rosea

text: Clonostachys rosea isolate 1827


text: public

text: Clonostachys rosea

text: Clonostachys rosea

text: Clonostachys rosea isolate CBS 706.97


text: URMITE

text: public

text: Clostridium neonatale strain NEC32 was isolated from necrotizing enterocolitis preterm neonate stool samples

characteristic: description

text: stool samples

text: Clostridium neonatale

text: Clostridium neonatale

characteristic: strain

text: Clostridium neonatale strain NEC32 genome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

characteristic: isolate

text: Zygosaccharomyces sapae

text: Zygosaccharomyces sapae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INTERNATIONAL INSTITUTE OF MOLECULAR AND CELL BIOLOGY IN WARSAW

text: public

text: Zygosaccharomyces rouxii

text: Zygosaccharomyces rouxii


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Zygosaccharomyces sapae

text: Zygosaccharomyces sapae


E-MTAB-6824:Sample 1

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6824:Sample 1

tag: Namespace:Institute of Cancer Sciences University of Glasgow

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: All MEFs were cultured on 10cm dishes in high (25mM) Glucose DMEM supplemented with 10% FBS and Pen/Strep. MEFs were maintained in 3% O2 to minimise senescent pressure. Freshly isolated MEFs were seeded at 1.3million cells per 10cm dish every 3 days. All analysis was performed at passage 4. Cells were seeded at 500,000 cell per 10cm dish. Cell were infected with Adeno-CMV-CRE (Uni Iowa Vector core facility) at an MOI of 250 viral particles per cell. Infections were Performed in 2mls complete media for 1 hr, with rocking every 15 minutes, then media was added to 10ml final volume. Infected cells were lysed in situ at 24 hours post infection, using Qiagen RNeasy lysis buffer Total RNA was isolated using Qiagen RNEasy midi extraction kits according to the product directions. Illumina TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold cat No RS-122-2301

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: Mus musculus

text: Sample 1


E-MTAB-6824:Sample 10

text: Institute of Cancer Sciences University of Glasgow

text: public

characteristic: SRA accession

text: E-MTAB-6824:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 10

characteristic: title


E-MTAB-6824:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6824:Sample 4

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 4


E-MTAB-6824:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6824:Sample 7

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 7


E-MTAB-6824:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6824:Sample 11

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 11


E-MTAB-6824:Sample 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6824:Sample 2

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 2


E-MTAB-6824:Sample 5

text: public

text: E-MTAB-6824:Sample 5

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 5


E-MTAB-6824:Sample 8

text: public

text: E-MTAB-6824:Sample 8

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: common name

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 8


E-MTAB-6824:Sample 12

text: public

characteristic: SRA accession

text: E-MTAB-6824:Sample 12

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: Mus musculus

text: Sample 12


E-MTAB-6824:Sample 3

text: public

text: E-MTAB-6824:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 3


E-MTAB-6824:Sample 6

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-6824:Sample 6

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 6

characteristic: title


E-MTAB-6824:Sample 9

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-6824:Sample 9

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: dermis

text: Mus musculus

text: Sample 9


text: Cell Line

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: Myeloid cells

characteristic: ArrayExpress-CellType

text: Bone marrow

characteristic: ArrayExpress-OrganismPart

text: Mus musculus

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Mus musculus

text: MOUSE AML LEUKEMIA

characteristic: sample description

text: Mus musculus


text: URMITE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Clostridium neonatale strain NEC26 was isolated from necrotizing enterocolitis preterm neonate stool samples

text: stool samples

characteristic: isolation source

text: Clostridium neonatale

text: Clostridium neonatale

characteristic: strain

text: Clostridium neonatale strain NEC26 genome


text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Mouse Bonne marrow small RNA

text: Mus musculus

characteristic: title


text: Mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


text: Lung

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

text: Homo sapiens

text: Homo sapiens


text: EPFL SV IBI-SV UPDEPLA

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:EPFL SV IBI-SV UPDEPLA

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: fibroblast

characteristic: cell type

text: house mouse

text: Protocols: Chromatin immunoprecipitation was performed as previously described (Blecher-Gonen et al., 2013). Briefly, 2*15 cm dishes of cells were cross-linked with 1% formaldehyde at room temperature for 10 minutes. The cross-linking was quenched by fresh glycine at a final concentration of 0.15 M. The cells were then harvested and lysed in a series of ice-cold lysis buffer to collect the nuclei. 3T3-L1 cells were induced to differentiation at day 0 (2 days post-confluence) by adding the induction medium, which is complete culture medium supplemented with the MDI cocktail (1μM dexamethasone, 0.5 mM 3-isobutyl-1-methylxanthine, and nM insulin, all from Sigma, Saint-Louis, MO). At day 2, induction medium was removed and maintenance medium (complete culture medium supplemented with 167 nM insulin) was added. 1 mL of nuclei suspension was transferred to Covaris 1 mL glass tube and sonicated at 10% Duty factor, peak incident power 140W, and cycle per purst 200 for 20 min in Covaris E220. 20 μl of the sonicated chromatin was de-cross-linked and the DNA was extracted for quality control. The majority of the DNA is around 200 bp. Those passed the quality control were divided into 25 μg of DNA each aliquot and 1 μl was kept as input. 75 μl of magnetic protein G beads coupled with 10 μg of anti-HA (ab9110, Abcam), anti-KAP1 (KAP1-a1: ab10483 (Abcam), KAP1-a2: ab22553 (Abcam)), anti-p300 (sc-585, Santa Cruz) or anti-IgG control antibody (12-371, Millipore) was incubated with each aliquot of chromatin overnight at 4 C. The ChIPmentation method (Schmidl et al., 2015) was used to generate the ChIP-seq library. In brief, the chromatin precipitated by the beads was subjected to Tn5 transposase-mediated tagmentation and adaptor ligation at one single step. Then the tagmentated chromatin was digested with Proteinase K and RNase, then de-cross993 linked by heating at 65ÅãC overnight. The DNA was then purified using the Agencourt AMPure XP beads, and amplified using the KAPA HiFi Hotstart 994 ReadyMix kit (KAPA Biosystems) and Nextera Index (Illumina) primer sets for 15 cycles.

characteristic: description

text: embryo

characteristic: developmental stage

text: doxycycline mediated expression of HA-tagged ZFP30

characteristic: genotype

text: normal medium

characteristic: growth condition

text: Mus musculus

text: Mus musculus

characteristic: replicate

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EPFL SV IBI-SV UPDEPLA

text: public

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

text: embryo

text: adipogenic differentiation

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus

characteristic: title


E-MTAB-6823:Sample 10

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6823:Sample 10

tag: Namespace:Charles University in Prague Faculty of Science Department of Cell Biology

text: ArrayExpress

text: epithelial cell

text: human

text: Protocols: One million HT1080 cells were cultured in a 500 μl three-dimensional gel made of rat tail collagen (Serva, 1.0 mg/ml) in DMEM with 1% fetal bovine serum for 48 hours in a 24-well plate. Gels from two wells were transferred into one 2 ml tube and homogenized with Tissue Tearor (BioSpec Products) in 600 μl of RNA extraction solution (60% v/v water-saturated phenol, 3.25 M guanidine thiocyanate, 400 mM sodium acetate buffer pH 4.0, 0.4% w/v N-lauroylsarcosine, 160 mM 2-mercaptoethanol) plus 100 μl of 6.1 M sodium chloride. Before the experiments, HT1080 cells were expanded in DMEM supplemented with 10% fetal bovine serum and 50 μg/ml gentamicin (all from Sigma). HT1080 cells bearing the doxycycline-inducible EGFP-RhoA G14V construct were treated with 250 ng/ml doxycycline. HT1080 cells bearing the LifeAct-mCherry construct were treated with 1 μM dasatinib (final concentration) in DMSO or equivalent volume of DMSO only (0.1% final concentration). 200 μl of chlorophorm was added to approx. 1 ml of the lysate and the mixture was vortexed vigorously for 10 seconds. After 30-minute centrifugation at 18,000 g at 4°C, the polar upper phase was transferred to a new tube, volume adjusted to 800 μl with RNase-free water, RNA was precipitated with 600 μl of isopropanol and recovered by centrifugation at 18,000 g for 30 minutes. The RNA pellet was washed three times with 600 μl of 75% ethanol and air-dried. Next, the RNA was treated with DNAse I to remove possible genomic DNA contamination. To this end, the pellet was directly dissolved in 100 μl of solution containing 4 units of DNAse I (Thermo Fisher Scientific) in manufacturer-provided reaction buffer and incubated at 37°C for 30 minutes. After that, the RNA was re-purified with RNeasy Protect Mini Kit (Qiagen) according to the manufacturer’s instructions and eluted in 50 μl of RNase-free water. Stranded, Illumina HiSeq-compatible library was constructed with ScriptSeq Complete (Human/Mouse/Rat) library preparation kit (Epicentre) according to the manufacturer’s instructions.

text: fibrosarcoma

characteristic: disease

text: LifeAct-mCherry

text: Homo sapiens

text: Homo sapiens

text: connective tissue

characteristic: organism part

text: amoeboid

characteristic: phenotype

text: Homo sapiens

text: Sample 10


E-MTAB-6823:Sample 12

text: Charles University in Prague Faculty of Science Department of Cell Biology

text: public

text: E-MTAB-6823:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: description

text: fibrosarcoma

text: LifeAct-mCherry

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: amoeboid

text: Homo sapiens

text: Sample 12


E-MTAB-6823:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6823:Sample 8

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: fibrosarcoma

text: LifeAct-mCherry

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: amoeboid

text: Homo sapiens

text: Sample 8


E-MTAB-6823:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6823:Sample 11

text: ArrayExpress

text: epithelial cell

text: human

text: fibrosarcoma

text: LifeAct-mCherry

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: connective tissue

text: mesenchymal

text: Homo sapiens

text: Sample 11

characteristic: title


E-MTAB-6823:Sample 7

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6823:Sample 7

text: ArrayExpress

text: epithelial cell

text: human

text: fibrosarcoma

characteristic: disease

text: LifeAct-mCherry

text: Homo sapiens

text: Homo sapiens

text: connective tissue

characteristic: organism part

text: mesenchymal

characteristic: phenotype

text: Homo sapiens

text: Sample 7


E-MTAB-6823:Sample 9

text: public

text: E-MTAB-6823:Sample 9

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: description

text: fibrosarcoma

text: LifeAct-mCherry

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: mesenchymal

text: Homo sapiens

text: Sample 9


E-MTAB-6823:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6823:Sample 2

text: ArrayExpress

text: epithelial cell

text: human

text: fibrosarcoma

text: doxycycline-mediated expression of EGFP-RhoA G14V

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: amoeboid

text: Homo sapiens

text: Sample 2


E-MTAB-6823:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6823:Sample 6

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: fibrosarcoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: connective tissue

text: amoeboid

text: Homo sapiens

text: Sample 6


E-MTAB-6823:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6823:Sample 4

text: ArrayExpress

text: epithelial cell

text: human

text: fibrosarcoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: connective tissue

characteristic: organism part

text: amoeboid

text: Homo sapiens

text: Sample 4

characteristic: title


E-MTAB-6823:Sample 1

text: public

text: E-MTAB-6823:Sample 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: fibrosarcoma

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: mesenchymal

characteristic: phenotype

text: Homo sapiens

text: Sample 1


E-MTAB-6823:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6823:Sample 3

text: ArrayExpress

text: epithelial cell

text: human

characteristic: description

text: fibrosarcoma

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: mesenchymal

text: Homo sapiens

text: Sample 3


E-MTAB-6823:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6823:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: fibrosarcoma

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: connective tissue

text: mesenchymal

text: Homo sapiens

text: Sample 5


text: NEIKER TECNALIA

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NEIKER TECNALIA

characteristic: collection date

text: metagenome

text: compost

characteristic: environment (biome)

text: compost

characteristic: environment (feature)

text: compost

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: organism

text: Compost

characteristic: project name

text: metagenome

text: MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NEIKER TECNALIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: metagenome

characteristic: common name

characteristic: description

text: bokashi

text: bokashi

text: bokashi

text: Spain

text: mimarks-survey

text: metagenome

text: Compost

text: metagenome

text: MiSeq

text: soil

characteristic: title


text: NEIKER TECNALIA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: metagenome

text: manure

characteristic: environment (biome)

text: manure

characteristic: environment (feature)

text: manure

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: metagenome

text: Compost

text: metagenome

text: MiSeq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NEIKER TECNALIA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: metagenome

text: soil

text: soil

text: soil

text: Spain

text: mimarks-survey

characteristic: investigation type

text: metagenome

characteristic: organism

text: Compost

characteristic: project name

text: metagenome

text: MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: CNRS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: vegetative

characteristic: dev stage

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia PTIWI09-1 mutant

characteristic: title


characteristic: ENA-CHECKLIST

text: CNRS

text: public

text: vegetative

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia mtGa-1 mutant (F2)


characteristic: ENA-FIRST-PUBLIC

text: CNRS

text: public

text: vegetative

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia mtGa-1 mutant (F3)


characteristic: ENA-LAST-UPDATE

text: CNRS

text: public

text: vegetative

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia Spinning Top Mutant


characteristic: External Id

text: CNRS

text: public

text: autogamous

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia DNA sequencing after mtGa depletion


text: CNRS

characteristic: INSDC center name

text: public

text: autogamous

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia DNA sequencing after mtGb depletion


text: CNRS

characteristic: INSDC first public

text: public

text: autogamous

text: Paramecium tetraurelia

text: Paramecium tetraurelia

text: Paramecium tetraurelia DNA sequencing after mtGa and mtGb depletion


text: Lung

characteristic: ArrayExpress-Phenotype

text: Homo sapiens

characteristic: ArrayExpress-Species

text: SC

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHMtest_3b5066e5-1960-4090-91db-4309b37517ef

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

characteristic: organism

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:San Raffaele Telethon Institute for Gene Therapy.

characteristic: Submitter Id

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

text: Protocols: C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse hematopoietic progenitor/stem cells transduced with a control mTie2-GFP-mirT LV. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. IFN treatment was performed by reconstituting lethally irradiated mice with hematopoietic stem and progenitor cells (HSPCs) that were previously transduced with a lentiviral vector (LV) containing the cDNA sequence of the IFN-alpha gene under the control of the Tie2 promoter/enhancer sequences. Among differentiated hematopoietic cells, Tie2 is selectively expressed in a population of tumor-infiltrating monocytes (TEMs), thus resulting in tumor-specific IFN-alpha delivery. The LV design also incorporates into the IFN-alpha transgene multiple miR-126 and miR-130a target sequences to suppress post-transcriptionally transgene expression in HSPCs limiting potential transgene in this compartment. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a mTie2-IFN-mirT LV. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a control mTie2-IFN-mirT LV. At 16 weeks of age mice were injected intravenously with 10-100 thousand B-ALL cells. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. ReliaPrep RNA MiniPrep System (Promega) RNA-Seq libraries were prepared with the SMART-Seq2 protocol, with minor modification. Briefly, RNA (1-5 ng) was reverse transcribed using custom oligodT and template-switching LNA oligos (sequences), followed by PCR amplification and clean-up (Ampure XP beads, Beckman Coulter). The resulting cDNA (0,5- 1 ng) was tagmented at 55°C for 30 minutes and final RNA-Seq libraries generated using reagents from the Nextera XT DNA Library Prep Kit (Illumina).

characteristic: description

text: B-cell acute lymphoblastic leukemia

characteristic: disease

text: lentiviral expression of mTie2-GFP-mirT

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: F4/80 positive

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

text: intravenous injection of 10-100 thousand B-ALL cells

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Raffaele Telethon Institute for Gene Therapy.

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: macrophage

text: house mouse

characteristic: common name

text: B-cell acute lymphoblastic leukemia

text: lentiviral expression of mTie2-GFP-mirT

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: F4/80 positive

text: Mus musculus

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: macrophage

characteristic: cell type

text: house mouse

text: Protocols: C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a mTie2-IFN-mirT LV. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a control mTie2-GFP-mirT LV. At 16 weeks of age mice were injected intravenously with 10-100 thousand B-ALL cells. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a control mTie2-IFN-mirT LV. At 16 weeks of age mice were injected intravenously with 10-100 thousand B-ALL cells. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. ReliaPrep RNA MiniPrep System (Promega) RNA-Seq libraries were prepared with the SMART-Seq2 protocol, with minor modification. Briefly, RNA (1-5 ng) was reverse transcribed using custom oligodT and template-switching LNA oligos (sequences), followed by PCR amplification and clean-up (Ampure XP beads, Beckman Coulter). The resulting cDNA (0,5- 1 ng) was tagmented at 55°C for 30 minutes and final RNA-Seq libraries generated using reagents from the Nextera XT DNA Library Prep Kit (Illumina).

characteristic: description

text: normal

text: lentiviral expression of mTie2-GFP-mirT

text: Mus musculus

text: Mus musculus

text: spleen

text: F4/80 positive

text: Mus musculus

text: female


text: public

text: ArrayExpress

text: macrophage

text: house mouse

text: Protocols: C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse hematopoietic progenitor/stem cells transduced with a control mTie2-GFP-mirT LV. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. IFN treatment was performed by reconstituting lethally irradiated mice with hematopoietic stem and progenitor cells (HSPCs) that were previously transduced with a lentiviral vector (LV) containing the cDNA sequence of the IFN-alpha gene under the control of the Tie2 promoter/enhancer sequences. Among differentiated hematopoietic cells, Tie2 is selectively expressed in a population of tumor-infiltrating monocytes (TEMs), thus resulting in tumor-specific IFN-alpha delivery. The LV design also incorporates into the IFN-alpha transgene multiple miR-126 and miR-130a target sequences to suppress post-transcriptionally transgene expression in HSPCs limiting potential transgene in this compartment. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a mTie2-IFN-mirT LV. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a control mTie2-GFP-mirT LV. At 16 weeks of age mice were injected intravenously with 10-100 thousand B-ALL cells. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. ReliaPrep RNA MiniPrep System (Promega) RNA-Seq libraries were prepared with the SMART-Seq2 protocol, with minor modification. Briefly, RNA (1-5 ng) was reverse transcribed using custom oligodT and template-switching LNA oligos (sequences), followed by PCR amplification and clean-up (Ampure XP beads, Beckman Coulter). The resulting cDNA (0,5- 1 ng) was tagmented at 55°C for 30 minutes and final RNA-Seq libraries generated using reagents from the Nextera XT DNA Library Prep Kit (Illumina).

text: B-cell acute lymphoblastic leukemia

characteristic: disease

text: lentiviral expression of mTie2-IFN-mirT LV and Tie2-driven overexpression of IFNalpha

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: spleen

characteristic: organism part

text: F4/80 positive

characteristic: phenotype

text: Mus musculus

text: female

characteristic: sex

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: macrophage

text: house mouse

characteristic: common name

text: Protocols: C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse hematopoietic progenitor/stem cells transduced with a control mTie2-GFP-mirT LV. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. IFN treatment was performed by reconstituting lethally irradiated mice with hematopoietic stem and progenitor cells (HSPCs) that were previously transduced with a lentiviral vector (LV) containing the cDNA sequence of the IFN-alpha gene under the control of the Tie2 promoter/enhancer sequences. Among differentiated hematopoietic cells, Tie2 is selectively expressed in a population of tumor-infiltrating monocytes (TEMs), thus resulting in tumor-specific IFN-alpha delivery. The LV design also incorporates into the IFN-alpha transgene multiple miR-126 and miR-130a target sequences to suppress post-transcriptionally transgene expression in HSPCs limiting potential transgene in this compartment. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a control mTie2-GFP-mirT LV. At 16 weeks of age mice were injected intravenously with 10-100 thousand B-ALL cells. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. C57BL/6 female mice (8 weeks old) were irradiated and transplanted with mouse HSPC transduced with a control mTie2-IFN-mirT LV. At 16 weeks of age mice were injected intravenously with 10-100 thousand B-ALL cells. At 20 weeks of age mice were sacrificed. Spleen tissue was dissociated and cells subjected to FACS sorting. F4/80+ macrophages were recovered. ReliaPrep RNA MiniPrep System (Promega) RNA-Seq libraries were prepared with the SMART-Seq2 protocol, with minor modification. Briefly, RNA (1-5 ng) was reverse transcribed using custom oligodT and template-switching LNA oligos (sequences), followed by PCR amplification and clean-up (Ampure XP beads, Beckman Coulter). The resulting cDNA (0,5- 1 ng) was tagmented at 55°C for 30 minutes and final RNA-Seq libraries generated using reagents from the Nextera XT DNA Library Prep Kit (Illumina).

text: normal

text: Mus musculus

characteristic: organism

text: Mus musculus

text: spleen

text: F4/80 positive

text: Mus musculus

text: female


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9345:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

tag: Namespace:Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

text: surface sediment from Fram Strait (Hausgarten)

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

text: 5'-CCTACGGGNGGCWGCAG-3' & 5'-GACTACHVGGGTATCTAATCC-3' ; S-D-Bact-0341-b-S-17 & S-D-Bact-0785-a-A-21, Klindworth et al. 2014

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 9346:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: marine benthic biome [ENVO:01000024]

characteristic: environment (biome)

text: marine benthic feature [ENVO:01000105]

characteristic: environment (feature)

text: deep marine sediment [ENVO:00002113]

characteristic: environment (material)

text: sediment

text: Arctic Ocean

text: mimarks-survey

text: marine sediment metagenome

characteristic: organism

text: ABYSS

text: marine sediment metagenome

text: sediment

text: Illumina MiSeq

text: true

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: 9347:c1fcdc5b-edff-456f-b3f0-49c23b0e66d0

text: GFBIO

text: marine benthic biome [ENVO:01000024]

text: marine benthic feature [ENVO:01000105]

text: deep marine sediment [ENVO:00002113]

text: sediment

characteristic: environmental package

text: Arctic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine sediment metagenome

characteristic: pangaea event label

characteristic: pcr primers

text: ABYSS

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

characteristic: total depth of water column