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text: E-MTAB-6769:560sTS.Chicken.Heart.Adult.Female

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text: Protocols: The organs were dissected from 9 developmental stages (starting at e10 until P155). The dissected ‘brain’ samples correspond to the cerebral hemispheres and the ‘cerebellum’ samples to the cerebellum. In chicken only the left ovary develops and this was the one that was dissected. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina)

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text: E-MTAB-6769:558sTS.Chicken.Liver.Adult.Female

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text: E-MTAB-6769:653sTS.Chicken.Brain.Adult.Male

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text: E-MTAB-6769:922sTS.Chicken.Brain.Adult.Male

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text: E-MTAB-6769:654sTS.Chicken.Cerebellum.Adult.Male

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text: E-MTAB-6769:650sTS.Chicken.Heart.Adult.Male

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text: E-MTAB-6769:555sTS.Chicken.Kidney.Adult.Male

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text: E-MTAB-6769:554sTS.Chicken.Liver.Adult.Male

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text: ArrayExpress

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text: Protocols: The organs were dissected from 9 developmental stages (starting at e10 until P155). The dissected ‘brain’ samples correspond to the cerebral hemispheres and the ‘cerebellum’ samples to the cerebellum. In chicken only the left ovary develops and this was the one that was dissected. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina)

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text: E-MTAB-6769:1757sTS.Chicken.Brain.5wph.Female

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text: E-MTAB-6769:1804sTS.Chicken.Brain.5wph.Female

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text: E-MTAB-6769:2433sTS.Chicken.Kidney.5wph.Female

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text: kidney

text: Gallus gallus

text: female

text: Red Junglefowl

characteristic: title


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1668sTS.Chicken.Liver.7dph.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: Protocols: The organs were dissected from 9 developmental stages (starting at e10 until P155). The dissected ‘brain’ samples correspond to the cerebral hemispheres and the ‘cerebellum’ samples to the cerebellum. In chicken only the left ovary develops and this was the one that was dissected. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina)

text: postnatal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: liver

text: Gallus gallus

text: female

text: Red Junglefowl


text: University of Heidelberg

text: public

text: E-MTAB-6769:1686sTSm.Chicken.Liver.7dph.Female

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: liver

characteristic: organism part

text: Gallus gallus

text: female

text: Red Junglefowl


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1669sTS.Chicken.Ovary.7dph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: ovary

text: Gallus gallus

text: female

characteristic: sex

text: Red Junglefowl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1687sTS.Chicken.Ovary.7dph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: ovary

text: Gallus gallus

text: female

text: Red Junglefowl

characteristic: strain


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1647sTS.Chicken.Brain.7dph.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: brain

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: title


text: University of Heidelberg

text: public

text: E-MTAB-6769:1654sTS.Chicken.Brain.7dph.Male

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: brain

text: Gallus gallus

text: male

text: Red Junglefowl


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1648sTS.Chicken.Cerebellum.7dph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: cerebellum

characteristic: organism part

text: Gallus gallus

text: male

text: Red Junglefowl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1655sTS.Chicken.Cerebellum.7dph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: cerebellum

text: Gallus gallus

text: male

characteristic: sex

text: Red Junglefowl


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1649sTS.Chicken.Heart.7dph.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: heart

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: strain


text: University of Heidelberg

text: public

text: E-MTAB-6769:1656sTS.Chicken.Heart.7dph.Male

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: heart

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: title


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1650sTS.Chicken.Kidney.7dph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: kidney

text: Gallus gallus

text: male

text: Red Junglefowl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1657sTS.Chicken.Kidney.7dph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: kidney

characteristic: organism part

text: Gallus gallus

text: male

text: Red Junglefowl


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1651bsTS.Chicken.Liver.7dph.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: male

characteristic: sex

text: Red Junglefowl


text: University of Heidelberg

text: public

text: E-MTAB-6769:1679sTS.Chicken.Liver.7dph.Male

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: strain


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1652sTS.Chicken.Testis.7dph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: testis

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1680sTS.Chicken.Testis.7dph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: testis

text: Gallus gallus

text: male

text: Red Junglefowl


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1775sTS.Chicken.Brain.10wph.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: brain

characteristic: organism part

text: Gallus gallus

text: female

text: Red Junglefowl


text: University of Heidelberg

text: public

text: E-MTAB-6769:1805sTS.Chicken.Brain.10wph.Female

text: ArrayExpress

text: chicken

characteristic: common name

text: Protocols: The organs were dissected from 9 developmental stages (starting at e10 until P155). The dissected ‘brain’ samples correspond to the cerebral hemispheres and the ‘cerebellum’ samples to the cerebellum. In chicken only the left ovary develops and this was the one that was dissected. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina)

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: brain

text: Gallus gallus

text: female

characteristic: sex

text: Red Junglefowl


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1776sTSm.Chicken.Cerebellum.10wph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: cerebellum

text: Gallus gallus

text: female

text: Red Junglefowl

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1869sTS.Chicken.Cerebellum.10wph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: cerebellum

text: Gallus gallus

text: female

text: Red Junglefowl

characteristic: title


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1777sTS.Chicken.Heart.10wph.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: heart

text: Gallus gallus

text: female

text: Red Junglefowl


text: University of Heidelberg

text: public

text: E-MTAB-6769:2457sTS.Chicken.Heart.10wph.Female

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: heart

characteristic: organism part

text: Gallus gallus

text: female

text: Red Junglefowl


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1778sTS.Chicken.Kidney.10wph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: kidney

text: Gallus gallus

text: female

characteristic: sex

text: Red Junglefowl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:2458sTS.Chicken.Kidney.10wph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: kidney

text: Gallus gallus

text: female

text: Red Junglefowl

characteristic: strain


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1779sTS.Chicken.Liver.10wph.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: female

text: Red Junglefowl

characteristic: title


text: University of Heidelberg

text: public

text: E-MTAB-6769:1873sTS.Chicken.Liver.10wph.Female

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: liver

text: Gallus gallus

text: female

text: Red Junglefowl


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1780sTS.Chicken.Ovary.10wph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: ovary

characteristic: organism part

text: Gallus gallus

text: female

text: Red Junglefowl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1781sTS.Chicken.Ovary.10wph.Female

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: ovary

text: Gallus gallus

text: female

characteristic: sex

text: Red Junglefowl


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1865sTSm.Chicken.Brain.10wph.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: brain

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: strain


text: University of Heidelberg

text: public

text: E-MTAB-6769:3920sTS.Chicken.Brain.10wph.Male

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: brain

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: title


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1770sTS.Chicken.Cerebellum.10wph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: cerebellum

text: Gallus gallus

text: male

text: Red Junglefowl


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1868sTS.Chicken.Cerebellum.10wph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: cerebellum

characteristic: organism part

text: Gallus gallus

text: male

text: Red Junglefowl


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1771sTS.Chicken.Heart.10wph.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: heart

text: Gallus gallus

text: male

characteristic: sex

text: Red Junglefowl


text: University of Heidelberg

text: public

text: E-MTAB-6769:2455sTS.Chicken.Heart.10wph.Male

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: heart

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: strain


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1772sTS.Chicken.Kidney.10wph.Male

text: ArrayExpress

text: chicken

text: Protocols: The organs were dissected from 9 developmental stages (starting at e10 until P155). The dissected ‘brain’ samples correspond to the cerebral hemispheres and the ‘cerebellum’ samples to the cerebellum. In chicken only the left ovary develops and this was the one that was dissected. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina)

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: kidney

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:2456sTS.Chicken.Kidney.10wph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: kidney

text: Gallus gallus

text: male

text: Red Junglefowl


text: University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6769:1774sTS.Chicken.Liver.10wph.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: liver

characteristic: organism part

text: Gallus gallus

text: male

text: Red Junglefowl


text: University of Heidelberg

text: public

text: E-MTAB-6769:1872sTS.Chicken.Liver.10wph.Male

text: ArrayExpress

text: chicken

characteristic: common name

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Gallus gallus

text: Gallus gallus

text: liver

text: Gallus gallus

text: male

characteristic: sex

text: Red Junglefowl


text: University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6769:1773sTS.Chicken.Testis.10wph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: testis

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Heidelberg

text: public

text: E-MTAB-6769:1782sTS.Chicken.Testis.10wph.Male

text: ArrayExpress

text: chicken

text: postnatal

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: testis

text: Gallus gallus

text: male

text: Red Junglefowl

characteristic: title


text: public

characteristic: SRA accession

tag: Namespace:Leibniz Institute for Freshwater Ecology and Inland Fisheries

characteristic: Submitter Id

text: Chytridiomycota, single sporangia on algae, whole genome amplified

text: Germany

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: organism

text: metagenome


text: Leibniz Institute for Freshwater Ecology and Inland Fisheries

text: public

characteristic: description

text: Germany

text: metagenome

text: metagenome


text: public

text: Inocybe oblectabilis JV32005

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe griseolilacina JV31931

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf. fusipes JV31915

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe tenebrosa JV31905

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe tardae JV31974

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe amblyspora JV32002

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe kriglsteineri JV32012

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf.umbrinella JV31930

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe bresadolae JV31952

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe fraudans JV31965

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe maculata JV31964

text: Sweden

text: metagenome

text: metagenome


text: public

text: Phellodon melaleucus RGC160924

text: Sweden

text: metagenome

text: metagenome


text: public

text: Tomentella cf ferruginea SS367

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella sp SS335

text: Sweden

text: metagenome

text: metagenome


text: public

text: Hydnellum ferrugineum EL312-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Hydnellum fennicus EL317-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Sarcodon martioflavus EL352-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Hygrocybe cinerellus EL118-15

text: Sweden

text: metagenome

text: metagenome


text: public

text: Thelephorales sp TU115430

text: Sweden

text: metagenome

text: metagenome


text: public

text: Sarcodon imbricatus EL384-10

text: Sweden

text: metagenome

text: metagenome


text: public

text: Hydnellum suaveolens EL8-14

text: Sweden

text: metagenome

text: metagenome


text: public

text: Phellodon niger EL35-14

text: Sweden

text: metagenome

text: metagenome


text: public

text: Bankera violascens RGC14-033

text: Sweden

text: metagenome

text: metagenome


text: public

text: Sarcodon scabrosus EL378-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Phellodon sp Mukka160915

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella cf tristis SS213

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella cf mucidula SS132

text: Sweden

text: metagenome

text: metagenome


text: public

text: Odontia fibrosa SS38

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella sp SS396

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella cf griseopergamacea 1 SS401

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella sp SS258

text: Sweden

text: metagenome

text: metagenome


text: public

text: Tomentella cf ferruginea SS367

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella cf tristis SS351

text: Sweden

text: metagenome

text: metagenome


text: public

text: Thelephora cf terrestris SS404

text: Sweden

text: metagenome

text: metagenome


text: public

text: Pseudotomentella sp KHL17400

text: Sweden

text: metagenome

text: metagenome


text: public

text: Tomentella cf umbrinospora T143

text: Sweden

text: metagenome

text: metagenome


text: public

text: Lenzitopsis oxycedri TU115268

text: Sweden

text: metagenome

text: metagenome


L.mad

text: public

text: L.mad

text: Nephridiophaga maderae

text: Germany

text: metagenome

text: metagenome

text: L.mad


text: public

text: Tomentellopsis echinospora TU110333

text: Sweden

text: metagenome

text: metagenome


text: public

text: Boletopsis grisea TU105539

text: Sweden

text: metagenome

text: metagenome


text: public

text: Thelephorales sp TU100021

text: Sweden

text: metagenome

text: metagenome


text: public

text: Amaurodon sumatranus TU115407

text: Sweden

text: metagenome

text: metagenome


text: public

text: Polyozellus multiplex TU115322

text: Sweden

text: metagenome

text: metagenome


text: public

text: Thelephora cf palmata TU115271

text: Sweden

text: metagenome

text: metagenome


text: public

text: Odontia ferruginea TU124098

text: Sweden

text: metagenome

text: metagenome


text: public

text: Tomentella cf alni KHL15025

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe relicina EL2-05

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe melanopus EL263-16 GB-0158876

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe chlorochroa EL18-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe pyriodora EL38-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf.oblectabilis EL71-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe leiocephala EL85-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cincinnata EL113-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe flocculosa EL168-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe geophylla EL373-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe sindonia EL364-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe favrei EL94-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Thelephorales sp TU115182

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe teraturgus EL172-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe flavella EL57-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe geraniodora EL126-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf.nematoloma EL128-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe microfastigiata EL198-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe leucoloma EL207-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe soluta EL369-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf.phaeocystidiosa EL23-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf.mixtilis EL200-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cf.agardhii EL329-16

text: Sweden

text: metagenome

text: metagenome


text: public

text: Inocybe cookei EL299-16

text: Sweden

text: metagenome

text: metagenome


text: St George's, University of London

text: public

tag: Namespace:St George's, University of London

text: Mycoplasma genitalium

text: Mycoplasma genitalium

text: Mycoplasma Genitalium MGPA DLST


text: St George's, University of London

text: public

text: Mycoplasma genitalium

text: Mycoplasma genitalium

text: Mycoplasma genitalium DLST MG309 Locus


text: St George's, University of London

text: public

text: Mycoplasma genitalium

text: Mycoplasma genitalium

text: Mycoplasma genitalium MG309 DLST


text: VTT

text: public

unit: L

characteristic: amount or size of sample collected

unit: mg/L

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: mine water

text: Mine water

characteristic: environment (biome)

text: drip from ceiling

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: iron

characteristic: magnesium

text: uncultured bacterium

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

characteristic: project name

text: sterile bottle and filtration

characteristic: sample collection device or method

text: uncultured bacterium

text: Iontorrent PGM

characteristic: sequencing method

characteristic: sulfate

unit: ºC

characteristic: temperature

characteristic: total depth of water column

text: water

characteristic: water environmental package

characteristic: zink


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured fungus

characteristic: common name

text: mine water

characteristic: description

text: Mine water

characteristic: environment (biome)

text: drip from ceiling

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured fungus

characteristic: organism

text: aerobic

text: sterile bottle and filtration

text: uncultured fungus

text: Iontorrent PGM

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured archaeon

text: mine water

text: Mine water

text: drip from ceiling

text: water

text: Finland

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: iron

characteristic: magnesium

text: uncultured archaeon

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

characteristic: project name

text: sterile bottle and filtration

characteristic: sample collection device or method

text: uncultured archaeon

text: Iontorrent PGM

characteristic: sequencing method

characteristic: sulfate

characteristic: temperature

characteristic: total depth of water column

text: water

characteristic: water environmental package

characteristic: zink


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: mine water

characteristic: description

text: Mine water

characteristic: environment (biome)

text: collection pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: aerobic

text: sterile bottle and filtration

text: uncultured bacterium

text: Iontorrent PGM

text: Bacteria_500m A

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured fungus

text: mine water

text: Mine water

text: collection pond

text: water

text: Finland

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: iron

characteristic: magnesium

text: uncultured fungus

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

characteristic: project name

text: sterile bottle and filtration

characteristic: sample collection device or method

text: uncultured fungus

text: Iontorrent PGM

characteristic: sequencing method

characteristic: sulfate

characteristic: temperature

characteristic: total depth of water column

text: water

characteristic: water environmental package

characteristic: zink


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: mine water

characteristic: description

text: Mine water

characteristic: environment (biome)

text: collection pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured archaeon

characteristic: organism

text: aerobic

text: sterile bottle and filtration

text: uncultured archaeon

text: Iontorrent PGM

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: mine water

text: Mine water

text: collection pond

text: water

text: Finland

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: iron

characteristic: magnesium

text: uncultured bacterium

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

characteristic: project name

text: sterile bottle and filtration

characteristic: sample collection device or method

text: uncultured bacterium

text: Iontorrent PGM

characteristic: sequencing method

characteristic: sulfate

characteristic: temperature

text: Bacteria_500m B

characteristic: total depth of water column

text: water

characteristic: water environmental package

characteristic: zink


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured bacterium

characteristic: common name

text: mine water

characteristic: description

text: Mine water

characteristic: environment (biome)

text: collection pond

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: aerobic

text: sterile bottle and filtration

text: uncultured bacterium

text: Iontorrent PGM

text: Bacteria_600m A

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured bacterium

text: mine water

text: Mine water

text: collection pond

text: water

text: Finland

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: iron

characteristic: magnesium

text: uncultured bacterium

text: aerobic

characteristic: oxygenation status of sample

characteristic: ph

characteristic: project name

text: sterile bottle and filtration

characteristic: sample collection device or method

text: uncultured bacterium

text: Iontorrent PGM

characteristic: sequencing method

characteristic: sulfate

characteristic: temperature

text: Bacteria_600m B

characteristic: total depth of water column

text: water

characteristic: water environmental package

characteristic: zink


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Novo Nordisk Foundation Center for Biosustainability Technical University of Denmark

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: The E. coli BW25113 strain and derivatives were used throughout this study. Genome engineering of E. coli was facilitated by λ-red recombination, P1 transduction and/or site-specific Tn-7 transposon. All ALE experiments were performed at 37C using M9. When passing manually, cells were grown in 250 ml glass flasks containing 25 ml fresh medium and required supplements in an orbital 311DS shaker (Labnet) at 250 rpm. Cells were passed daily and cell density was maintained at an OD600 value of 0.2-0.4 after 24 h of growth. Experiments were stopped when growth rate of the cells reached 0.6-0.7 h-1 and evolved cells were obtained by serial plating. At least three lineages of the initial strain were maintained during manual passages. When passages were automated, experiments were performed according to [PMID: 25304508] and six lineages of the initial strain were usually maintained. When cells were evolved under tBPt-dependent selection conditions, phenylalanine at 100 mg/l was supplemented. The melatonin pathway was evolved in the presence of 100 mg/l of methionine and 5HTP. Antibiotics were not supplied during ALE. Unless stated otherwise on the publication, all strains were maintained at 37℃ in LB (Lennox) (Sigma Aldrich), 2xYT or M9 media containing 1xM9 minimal salts (BD Difco™), 2 mM MgSO4, 100 μM CaCl2, 500-fold diluted trace minerals (10 g/l FeCl3·6H2O, 2 g/l ZnSO4·7H2O, 0.4 g/l CuCl2·2H2O, 1 g/l MnSO4·H2O, 0.6 g/l CoCl2·6H2O, and 1.6 mM EDTA, pH 8.0), 1x ATCC® Vitamin Supplement (ATCC MD-VS™), and 0.2% glucose (w/v). Unless stated otherwise, ampicillin and spectinomycin were used at 50 mg/l; chloramphenicol and kanamycin were used at 25 mg/l. Total DNA was extracted using a PureLink Genomic DNA Kit (Invitrogen). DNA libraries were prepared using a Kapa Hyper Prep Library Prep Kit (Roche Molecular Systems).

characteristic: description

text: SAM selection 1st ALE

characteristic: growth condition

text: Escherichia coli BW25113

characteristic: organism

text: Escherichia coli BW25113

text: Escherichia coli BW25113

characteristic: strain

characteristic: title


text: Novo Nordisk Foundation Center for Biosustainability Technical University of Denmark

text: public

text: ArrayExpress

text: SAM selection 1st ALE

text: Escherichia coli BW25113

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: public

text: ArrayExpress

text: SAM selection 2nd ALE

text: Escherichia coli BW25113

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: public

text: ArrayExpress

text: tBPt selection 1st ALE

text: Escherichia coli BW25113

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: public

text: ArrayExpress

text: tBPt selection 2nd ALE

text: Escherichia coli BW25113

text: Escherichia coli BW25113

text: Escherichia coli BW25113


text: VTT

text: public

text: uncultured archaeon

characteristic: common name

text: enrichment

text: uncultured archaeon

text: uncultured archaeon


characteristic: ENA-CHECKLIST

text: VTT

text: public

text: uncultured fungus

text: enrichment

text: uncultured fungus

text: uncultured fungus


characteristic: ENA-FIRST-PUBLIC

text: VTT

text: public

text: uncultured bacterium

text: enrichment

text: uncultured bacterium

text: uncultured bacterium


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium VIB Center for Plant Systems Biology,VIB, Gent, Belgium

characteristic: age

text: ArrayExpress

text: thale cress

text: Protocols: Seedlings were grown on half-strength (0.5×) Murashige and Skoog (MS) medium under the growth chamber conditions 16 h day/8 h night with white light and 20°C. 10-day old Arabidopsis seedlings at the developmental stage 1.02 (Boyes et al., 2001) were dissected with laboratory micro scissors to remove roots and cotyledons and obtain shoot apices. The Arabidopsis seeds were sterilized in 5% (v/v) bleach containing 0.05% (v/v) Tween 20 for 10 min, washed in water, sown on half-strength Murashige Skoog (MS) medium and stratified at 4°C for 48 h. Subsequently seedlings were grown under the growth chamber conditions 16 h day/8 h night with white light and 20°C. The poly-A containing mRNA molecules were selected and converted to cDNA using the reagents provided in the Illumina TruSeq Stranded mRNA Sample Preparation Kits. The dissected shoot apices were frozen in liquid nitrogen and homogenized. RNA was isolated with RNeasy Plant Kit (Qiagen) with on-column DNase digestion. The manufacturer’s protocol was modified by including two additional washes of RNeasy spin columns with the RPE buffer. The library of cDNA template molecules of known strand origin was obtained using the reagents provided in the Illumina TruSeq Stranded mRNA Sample Preparation Kits.

text: Stage 1.02, two rosette leaves >1 mm in length

characteristic: developmental stage

characteristic: ecotype

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot apex

characteristic: organism part

text: Arabidopsis thaliana


characteristic: External Id

text: Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium VIB Center for Plant Systems Biology,VIB, Gent, Belgium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: thale cress

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot apex

text: Arabidopsis thaliana


text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

characteristic: genetic modification

text: hub1-4 mutant

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: shoot apex

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: thale cress

characteristic: common name

text: khd-1 mutant

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot apex

text: Arabidopsis thaliana

characteristic: title


text: public

characteristic: age

text: ArrayExpress

text: thale cress

characteristic: developmental stage

characteristic: ecotype

text: spen-1 mutant

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: shoot apex

characteristic: organism part

text: Arabidopsis thaliana


E-MTAB-5617:PUF2 RNAi +tet

characteristic: External Id

text: ZMBH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5617:PUF2 RNAi +tet

text: ArrayExpress

text: Protocols: Cells were centrifuged out of the medium in vitro culture of bloodstream forms with standard HMI medium V5-PUF2 was immunoprecipitated and RNA was purified from the flow-through (FT) and bound eluate fractions myc-tagged UPF1 was purified and RNA was prepared from the bound eluate and flow-thorough (FT) fractions RNA was made using Trifast reagent (Peqlab) according to the manufacturer's instructions illumina kit

text: bloodstream form

text: inducible PUF2 RNAi

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

characteristic: strain

text: PUF2 RNAi +tet


E-MTAB-5617:PUF2 RNAi -tet

text: ZMBH

text: public

characteristic: SRA accession

text: E-MTAB-5617:PUF2 RNAi -tet

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: description

text: bloodstream form

text: inducible PUF2 RNAi

text: Trypanosoma brucei

characteristic: organism

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: PUF2 RNAi -tet


E-MTAB-5617:UBP1-myc eluate

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ZMBH

text: public

text: E-MTAB-5617:UBP1-myc eluate

text: ArrayExpress

text: Protocols: Cells were centrifuged out of the medium in vitro culture of bloodstream forms with standard HMI medium V5-PUF2 was immunoprecipitated and RNA was purified from the flow-through (FT) and bound eluate fractions RNAi was induced to deplete PUF2, +tet is induced and -tet is not induced RNA was made using Trifast reagent (Peqlab) according to the manufacturer's instructions illumina kit

text: bloodstream form

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: UBP1-myc eluate

characteristic: title


E-MTAB-5617:UBP1-myc FT

text: ZMBH

text: public

text: E-MTAB-5617:UBP1-myc FT

text: ArrayExpress

text: bloodstream form

characteristic: developmental stage

characteristic: genotype

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: UBP1-myc FT


E-MTAB-5617:V5-PUF2 eluate

characteristic: External Id

text: ZMBH

text: public

text: E-MTAB-5617:V5-PUF2 eluate

text: ArrayExpress

text: Protocols: Cells were centrifuged out of the medium in vitro culture of bloodstream forms with standard HMI medium myc-tagged UPF1 was purified and RNA was prepared from the bound eluate and flow-thorough (FT) fractions RNAi was induced to deplete PUF2, +tet is induced and -tet is not induced RNA was made using Trifast reagent (Peqlab) according to the manufacturer's instructions illumina kit

text: bloodstream form

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: V5-PUF2 eluate


E-MTAB-5617:V5-PUF2 FT

text: ZMBH

characteristic: INSDC center name

text: public

text: E-MTAB-5617:V5-PUF2 FT

text: ArrayExpress

text: bloodstream form

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Trypanosoma brucei

text: Lister 427

text: V5-PUF2 FT


text: INRA

characteristic: INSDC first public

text: public

characteristic: collection date

text: Crop

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Capsicum annuum

text: pepper

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Capsicum annuum

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Wild

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Capsicum annuum var. glabriusculum

characteristic: organism

text: pepper

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Capsicum annuum var. glabriusculum

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Capsicum baccatum

text: pepper

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Capsicum baccatum

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Capsicum chacoense

characteristic: organism

text: pepper

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Capsicum chacoense

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Capsicum chinense

text: pepper

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Capsicum chinense

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Capsicum frutescens

characteristic: organism

text: pepper

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Capsicum frutescens

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Wild

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Capsicum frutescens

text: pepper

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Capsicum frutescens

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum arcanum

characteristic: organism

text: tomato

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum arcanum

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum cheesmaniae

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum cheesmaniae

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum chilense

characteristic: organism

text: tomato

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum chilense

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum chmielewskii

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum chmielewskii

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum corneliomuelleri

characteristic: organism

text: tomato

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum corneliomuelleri

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum habrochaites

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum habrochaites

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


HirsutumB

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HirsutumB

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum habrochaites

characteristic: organism

text: tomato

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum habrochaites

text: HirsutumB

text: variety

text: HirsutumB

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum huaylasense

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum huaylasense

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum incanum

characteristic: organism

text: eggplant

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum incanum

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: eggplant

characteristic: common name

text: Crop

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum melongena

text: eggplant

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum melongena

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: eggplant

characteristic: common name

text: Wild grp E

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum melongena

characteristic: organism

text: eggplant

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum melongena

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

text: public

text: eggplant

text: Wild grp F

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum melongena

text: eggplant

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum melongena

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: eggplant

characteristic: common name

text: Wild grp G

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum melongena

characteristic: organism

text: eggplant

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum melongena

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum parvifolium

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum parvifolium

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum pennellii

characteristic: organism

text: tomato

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum pennellii

text: variety

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INRA

text: public

text: Crop Wild relative

text: France

text: glasshouse

characteristic: isolation and growth condition

text: natural

characteristic: light regimen

characteristic: number of replicons

text: Solanum peruvianum

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: plant treatment

text: diploid

characteristic: ploidy

text: sexual

characteristic: propagation

text: no diagnosis

characteristic: sample disease status

text: healthy

characteristic: sample health state

text: Solanum peruvianum

characteristic: soil ph

characteristic: subspecific genetic lineage name

text: variety

characteristic: subspecific genetic lineage rank

text: 3 times a day

characteristic: watering regimen


CMV.SEL.INRA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CMV.SEL.INRA

characteristic: Submitter Id

characteristic: collection date

text: Crop Wild relative

characteristic: description

characteristic: estimated size

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: glasshouse

characteristic: growth facility

text: natural

text: Solanum peruvianum

characteristic: organism

text: tomato

text: soil

text: diploid

text: sexual

text: no diagnosis

text: healthy

text: Solanum peruvianum

text: CMV.SEL.INRA

text: variety

text: CMV.SEL.INRA

characteristic: title

text: 3 times a day


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: St George's, University of London

text: public

text: Mycoplasma genitalium

text: Mycoplasma genitalium

text: Mycoplasma genitalium MGPA DLST


characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: days

characteristic: age units

characteristic: anonymized name

text: ZBKK

characteristic: chkage

text: GAZ:United States of America

characteristic: country

text: Wet brown content

text: TRUE

characteristic: dpi

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: dense settlement biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: intestine environment

characteristic: experiment title

text: UCDANS

text: USA:CA:Davis

characteristic: geo loc name

text: Not collected

characteristic: height unit

characteristic: host age

text: UBERON:gastrointestinal system

characteristic: host body habitat

text: UBERON:lumen of gut

characteristic: host body product

text: UBERON:digestive tract

characteristic: host body site

text: chicken

characteristic: host common name

text: Not collected

characteristic: host height

text: chick

characteristic: host life stage

text: Gallus gallus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: Not collected

characteristic: host weight

characteristic: latitude

characteristic: longitude

text: chicken gut metagenome

text: UC Davis

text: TRUE

text: FALSE

characteristic: public

text: UC Davis

characteristic: sample center

text: cecal content

characteristic: sample type

text: chicken gut metagenome

text: Not collected

characteristic: sex

text: ZBKK

text: Noninfected

characteristic: treatment

characteristic: treatmentdpi

text: Zhou

characteristic: trial

characteristic: trialtreatmentdpi

text: Not collected

characteristic: weight unit