text: public

tag: Namespace:XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

text: China biocrust snow

characteristic: description

text: terristrial

characteristic: environment (biome)

text: desert

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: China

characteristic: geographic location (country and/or sea)

text: 44��15�䡫46��50��

characteristic: geographic location (latitude)

text: 84��50�䡫91��20��

characteristic: geographic location (longitude)

text: bacterium

characteristic: pcr primers

text: bacterium

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: Altered snowfall drives changes in bacterial communities of biocrusts in the Gurbantunggut temperate desert (Junggar Basin, China)

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: China biocrust snow

text: terristrial

text: desert

text: soil

text: Yes

text: China

text: 44��15�䡫46��50��

unit: DD

text: 84��50�䡫91��20��

text: bacterium

characteristic: organism

text: bacterium

text: 16S rRNA


Transcriptome data

text: public

text: Transcriptome data

tag: Namespace:Korea Advanced Institute of Science and technology

text: Akkermansia muciniphila ATCC BAA-835

text: Akkermansia muciniphila ATCC BAA-835

text: Transcriptome of Akkermansia muciniphila


Mhassiacum

text: CBMSO

text: public

text: Mhassiacum

text: Mycolicibacterium hassiacum DSM 44199

text: Mycolicibacterium hassiacum DSM 44199

text: Mycobacterium hassiacum genome assembly and annotation


text: Hafnia alvei

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Hafnia alvei

characteristic: common name

text: Hafnia alvei

text: Hafnia alvei

characteristic: subject id


text: Klebsiella oxytoca

text: SC

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Klebsiella pneumoniae

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Escherichia coli

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


E-MTAB-54791536316409:Sample 12

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 12

tag: Namespace:1090 Vienna Austria

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: stem cell (CLV3+)

characteristic: cell type

text: thale cress

text: Protocols: Arabidopsis was grown on soil under a 16h-light/8h-dark regime at 21°C DNA was extracted from FANSed nuclei with the Quick-DNA Microprep Kit (Zymo Research)

characteristic: description

text: young seedling

characteristic: developmental stage

characteristic: ecotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 12


E-MTAB-54791536316409:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: 1090 Vienna Austria

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-54791536316409:Sample 13

text: ArrayExpress

text: stem cell (CLV3+)

text: thale cress

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 13

characteristic: title


E-MTAB-54791536316409:Sample 16

text: 1090 Vienna Austria

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-54791536316409:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: SAM meristematic cell (CLV3-)

text: thale cress

text: young seedling

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 16


E-MTAB-54791536316409:Sample 17

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 17

characteristic: age

text: ArrayExpress

characteristic: broker name

text: SAM meristematic cell (CLV3-)

characteristic: cell type

text: thale cress

characteristic: common name

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 17


E-MTAB-54791536316409:Sample 8

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 8

text: ArrayExpress

text: whole above ground seedling

text: thale cress

characteristic: description

text: young seedling

characteristic: developmental stage

characteristic: ecotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 8


E-MTAB-54791536316409:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 9

text: ArrayExpress

text: whole above ground seedling

text: thale cress

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 9


E-MTAB-54791536316409:Sample 14

text: 1090 Vienna Austria

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-54791536316409:Sample 14

text: ArrayExpress

text: stem cell (CLV3+)

text: thale cress

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 14

characteristic: title


E-MTAB-54791536316409:Sample 15

text: 1090 Vienna Austria

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-54791536316409:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: stem cell (CLV3+)

text: thale cress

text: young seedling

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 15


E-MTAB-54791536316409:Sample 18

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 18

characteristic: age

text: ArrayExpress

characteristic: broker name

text: SAM meristematic cell (CLV3-)

characteristic: cell type

text: thale cress

characteristic: common name

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 18


E-MTAB-54791536316409:Sample 19

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 19

text: ArrayExpress

text: SAM meristematic cell (CLV3-)

text: thale cress

characteristic: description

text: young seedling

characteristic: developmental stage

characteristic: ecotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 19


E-MTAB-54791536316409:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: 1090 Vienna Austria

text: public

text: E-MTAB-54791536316409:Sample 10

text: ArrayExpress

text: whole above ground seedling

text: thale cress

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 10


E-MTAB-54791536316409:Sample 11

text: 1090 Vienna Austria

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-54791536316409:Sample 11

text: ArrayExpress

text: whole above ground seedling

text: thale cress

text: young seedling

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Sample 11

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE FOR HEALTH AND WELFARE

characteristic: Submitter Id

characteristic: collection date

text: Finland

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: RTB

characteristic: isolate

text: clinical sample

characteristic: isolation source

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: WGS of Mycobacterium tuberculosis isolates from recurrent episodes of tuberculosis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NATIONAL INSTITUTE FOR HEALTH AND WELFARE

text: public

text: Finland

text: diseased

text: homo sapiens

text: RTB

text: clinical sample

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Instituto de Salud Carlos III

text: public

text: sam_e436ff5d-4764-4e75-b847-09e6b33bb002

tag: Namespace:Instituto de Salud Carlos III

characteristic: checklist

text: ISCIII

characteristic: collected by

text: Spain

text: Symptomatic

characteristic: host disease status

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sam_6c7eb75e-c6f4-44cd-879a-6d20c9a1a5a3

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis

characteristic: title


text: Instituto de Salud Carlos III

text: public

characteristic: SRA accession

text: sam_28f9a551-30a4-4409-88c6-e28b5349a140

characteristic: Submitter Id

text: ISCIII

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: MHH

text: public

characteristic: description

text: human

characteristic: environment (biome)

text: lung

characteristic: environment (feature)

characteristic: environment (material)

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: ABI-solid

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: lung

text: sputum

text: Germany

text: host-associated

text: human-associated

text: metagenome

text: metagenome

text: metagenome

text: ABI-solid

characteristic: title


text: Vibrio cholerae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Vibrio cholerae

characteristic: common name

text: Vibrio cholerae

text: Vibrio cholerae

characteristic: subject id


text: UNIBE-IG

text: public

text: horse

text: horse - Warmblood female - Cutis control tissue (Abdomen, Udder, inguinal)

characteristic: description

text: Equus caballus

characteristic: organism

text: Equus caballus

text: horse - Warmblood female


text: UNIBE-IG

text: public

text: horse

text: horse - WarmBlood female - Sarcoid tumour aggressive tissue (Abdomen, Udder, inguinal)

text: Equus caballus

text: Equus caballus

text: horse - WarmBlood female


text: UNIBE-IG

text: public

text: horse

text: horse - WarmBlood female - Cutis control tissue (Head, neck, udder)

text: Equus caballus

text: Equus caballus

text: horse - WarmBlood female


text: UNIBE-IG

text: public

text: horse

text: horse -WarmBlood female -Sarcoid tumour aggressive tissue (Head, neck, udder)

text: Equus caballus

text: Equus caballus

text: horse - WarmBlood female


2355 R

text: UNIBE-IG

text: public

text: 2355 R

text: horse

text: horse - Paint Horse male -castrated Cutis control tissue (Leg)

text: Equus caballus

text: Equus caballus

text: horse - Paint Horse- male castrated


text: UNIBE-IG

text: public

text: horse

text: horse - Paint Horse male castrated - Sarcoid tumour aggressive tissue (Leg)

text: Equus caballus

text: Equus caballus

text: horse - Paint Horse male castrated


text: UNIBE-IG

text: public

text: horse

text: horse -Warmblood male castrated - Cutis control tissue (Preputium)

text: Equus caballus

text: Equus caballus

text: horse -Warmblood male castrated


text: UNIBE-IG

text: public

text: horse

text: horse - Warmblood male - castrated -Sarcoid tumour mild tissue (Preputium)

text: Equus caballus

text: Equus caballus

text: horse -Warmblood male - castrated


text: UNIBE-IG

text: public

text: horse

text: horse -Arabian- male - Cutis control tissue (Preputium)

text: Equus caballus

text: Equus caballus

text: horse -Arabian- male


text: UNIBE-IG

text: public

text: horse

text: horse - Arabian female - Sarcoid tumour mild tissue (Preputium)

text: Equus caballus

text: Equus caballus

text: horse - Arabian female


text: UNIBE-IG

text: public

text: horse

text: horse - Warmblood -female - Cutis control tissue (Abdomen)

text: Equus caballus

text: Equus caballus

text: horse - Warmblood-female


text: UNIBE-IG

text: public

text: horse

text: horse - WarmBlood female - Sarcoid tumour mild tissue (Abdomen)

text: Equus caballus

text: Equus caballus

text: horse - WarmBlood female


text: UNIBE-IG

text: public

text: horse

text: horse - Franches- Montagnes male castrated - Cutis control tissue (Corpus penis)

text: Equus caballus

text: Equus caballus

text: horse -Franches- Montagnes- male castrated


text: UNIBE-IG

text: public

text: horse

text: horse - Franches- Montagnes male castrated - Sarcoid tumour tissue (penis)

text: Equus caballus

text: Equus caballus


text: UNIBE-IG

text: public

text: horse

text: horse - Shetland Pony male castrated- Cutis control tissue (Corpus penis)

text: Equus caballus

text: Equus caballus

text: horse - Shetland Pony male castrated


text: UNIBE-IG

text: public

text: horse

text: horse -Shetland Pony male castrated-Sarcoid Tumour tissue (Penis)

text: Equus caballus

text: Equus caballus

text: horse - Shetland Pony male castrated


text: UNIBE-IG

text: public

text: horse

text: horse -Irish Cob male castrated - Cutis control tissue (Corpus penis)

text: Equus caballus

text: Equus caballus

text: horse -Irish Cob male castrated


text: UNIBE-IG

text: public

text: horse

text: horse - Irish Cob male castrated - Sarcoid tumour tissue (Penis)

text: Equus caballus

text: Equus caballus

text: horse -Irish Cob male castrated


text: UNIBE-IG

text: public

text: horse

text: horse -Warmblood- female - Mucous membrane (Fornix Conjunctiva nicitans und Conjunctiva bulbi OD)

text: Equus caballus

text: Equus caballus

text: horse -Warmblood- female


text: UNIBE-IG

text: public

text: horse

text: horse -Mixed French breed male castrated- Sarcoid tumour tissue (Lower eyelid/ Uvea)

text: Equus caballus

text: Equus caballus


text: UNIBE-IG

text: public

text: horse

text: horse - New Forest Pony male castrated - Mucous membrane (Fornix Conjunctiva nicitans und Conjunctiva bulbi OD)

text: Equus caballus

text: Equus caballus

text: horse - New Forest Pony male castrated


text: UNIBE-IG

text: public

text: horse

text: horse -Shetland Pony female - Sarcoid Tumor tissue (Limbus cornea)

text: Equus caballus

text: Equus caballus

text: horse -Shetland Pony female


text: UNIBE-IG

text: public

text: horse

text: horse -American Quarter Horse male castrated - Mucous membrane (Fornix Conjunctiva nicitans und Conjunctiva bulbi OD)

text: Equus caballus

text: Equus caballus


text: UNIBE-IG

text: public

text: horse

text: horse -Spotted Saddle Horse male castrated- Sarcoid tumour tissue (Third eyelid)

text: Equus caballus

text: Equus caballus

text: horse - Spotted Saddle Horse male castrated


text: Mycobacterium avium

text: SC

text: public

text: Mycobacterium avium

text: Mycobacterium avium 05-4293

text: Mycobacterium avium 05-4293


text: VTT

text: public

unit: L

characteristic: amount or size of sample collected

unit: mg/L

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured bacterium

text: groundwater

text: Groundwater

characteristic: environment (biome)

text: Bedrock

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Finland

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: magnesium

text: uncultured bacterium

text: anaerobic

characteristic: oxygenation status of sample

characteristic: ph

text: MIND

characteristic: project name

text: sterile bottle and filtration

characteristic: sample collection device or method

text: uncultured bacterium

text: Ion Torrent PGM

characteristic: sequencing method

characteristic: sulfate

characteristic: total depth of water column

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VTT

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: amount or size of sample collected

characteristic: calcium

characteristic: chloride

characteristic: collection date

text: uncultured archaeon

characteristic: common name

text: groundwater

characteristic: description

text: Groundwater

characteristic: environment (biome)

text: Bedrock

text: water

text: Finland

text: mimarks-survey

text: uncultured archaeon

characteristic: organism

text: anaerobic

text: MIND

text: sterile bottle and filtration

text: uncultured archaeon

text: Ion Torrent PGM

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GENOMNIA SRL

text: public

tag: Namespace:GENOMNIA SRL

text: human

text: Human G2 Chondrosarcome microRNAs

text: Homo sapiens

characteristic: host scientific name

text: Homo sapiens

text: Homo sapiens

text: cartilage

characteristic: tissue type

text: Human Chondrosarcome miRNAs


characteristic: External Id

text: GENOMNIA SRL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: Human G1 chondrosarcome microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Human Extraskeletal microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

text: human

characteristic: common name

text: G2 Human Chondrosarcome microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

text: human

text: Human G2-G3 Chondrosarcome microRNAs

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

text: human

text: Human Central Mixoid G2 Chondrosarcome with G3 micro-outbreaks microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

text: human

text: G3 Human Chondrosarcome microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

text: human

text: G2-G3 Human Chondrosarcome microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


text: GENOMNIA SRL

text: public

text: human

text: Human Central Chondrosarcome microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


CTRL

text: GENOMNIA SRL

text: public

text: CTRL

text: human

text: Human Control Cartilage microRNAs

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: cartilage

text: Human Chondrosarcome miRNAs


E-MTAB-7197:HCT116 siNT5 2

text: public

text: E-MTAB-7197:HCT116 siNT5 2

tag: Namespace:University Medical Center Gottingen Clinic for General, Visceral and Pediatric Surgery Tumor Epigenetics

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: HCT116 were grown in McCoy’s medium supplemented with 10% fetal bovine serum, 100 units/ml penicillin and 100 μg/ml streptomycin at 37°C and 5% CO2. siRNA transfections were performed using Lipofectamine® RNAiMAX (Invitrogen) according to the manufacturer’s instructions. 48 hours post-transfection, cells were treated with 10 ng/mL of human recombinant TNFα for 30 min. RNA was extracted usiung QIAzol® Lysis Reagent (Qiagen) according to the manufacturer's protocol. Libraries were prepared using TruSeq RNA Library Preparation Kit v2 (Illumina®) after verifying the RNA integrity on an agarose gel. Library quality was assessed using an Agilent Bioanalyzer 2100

text: colon carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: HCT116 siNT5 2


E-MTAB-7197:HCT116 siNT5 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University Medical Center Gottingen Clinic for General, Visceral and Pediatric Surgery Tumor Epigenetics

text: public

text: E-MTAB-7197:HCT116 siNT5 3

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siNT5 3

characteristic: title


E-MTAB-7197:HCT116 siNT5 TNFa 1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7197:HCT116 siNT5 TNFa 1

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siNT5 TNFa 1


E-MTAB-7197:HCT116 siNT5 TNFa 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7197:HCT116 siNT5 TNFa 2

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siNT5 TNFa 2


E-MTAB-7197:HCT116 siNT5 TNFa 3

text: public

text: E-MTAB-7197:HCT116 siNT5 TNFa 3

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

characteristic: description

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siNT5 TNFa 3


E-MTAB-7197:HCT116 siNT5 1

text: public

text: E-MTAB-7197:HCT116 siNT5 1

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siNT5 1


E-MTAB-7197:HCT116 siRNF40 1

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7197:HCT116 siRNF40 1

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens

text: HCT116 siRNF40 1


E-MTAB-7197:HCT116 siRNF40 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7197:HCT116 siRNF40 2

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siRNF40 2


E-MTAB-7197:HCT116 siRNF40 3

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-7197:HCT116 siRNF40 3

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siRNF40 3

characteristic: title


E-MTAB-7197:HCT116 siRNF40 TNFa 1

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text: public

characteristic: INSDC status

text: E-MTAB-7197:HCT116 siRNF40 TNFa 1

text: ArrayExpress

text: epithelial cell

text: human

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siRNF40 TNFa 1


E-MTAB-7197:HCT116 siRNF40 TNFa 2

text: public

characteristic: SRA accession

text: E-MTAB-7197:HCT116 siRNF40 TNFa 2

characteristic: Submitter Id

text: ArrayExpress

text: epithelial cell

text: human

characteristic: common name

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siRNF40 TNFa 2


E-MTAB-7197:HCT116 siRNF40 TNFa 3

text: public

text: E-MTAB-7197:HCT116 siRNF40 TNFa 3

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

text: human

characteristic: description

text: colon carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

text: HCT116 siRNF40 TNFa 3


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id


text: Homo Sapiens

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: HUAZHONG AGRICULTRAL UNIVERSITY

text: public

characteristic: collection date

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: samples were frozen in liquid nitrogen and stored at -80°C

characteristic: isolation and growth condition

characteristic: number of replicons

text: Chimonanthus praecox

characteristic: organism

text: fully open stage flower

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: individual plant

characteristic: plant structure

text: Chimonanthus praecox

text: H29 fully open flower1


text: HUAZHONG AGRICULTRAL UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: Chimonanthus praecox

text: fully open stage flower

text: soil

text: individual plant

text: Chimonanthus praecox

text: H29 fully open flower2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HUAZHONG AGRICULTRAL UNIVERSITY

text: public

characteristic: collection date

characteristic: estimated size

text: China

text: Chimonanthus praecox

text: fully open stage flower

text: soil

text: individual plant

text: Chimonanthus praecox

text: H29 fully open flower3


text: HUAZHONG AGRICULTRAL UNIVERSITY

text: public

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

characteristic: number of replicons

text: Chimonanthus praecox

characteristic: organism

text: fully open stage flower

text: soil

text: individual plant

text: Chimonanthus praecox

text: sw001 fully open flower1


text: UNIVERSITY OF SYDNEY

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY OF SYDNEY

text: Pneumococcal Reference Laboratory, NSW, Australia

characteristic: collected by

text: Pneumococcus

characteristic: common name

text: Isolate causing Invasive Pnuemococcal Disease

characteristic: description

text: No

characteristic: environmental sample

text: Australia

text: 33.8688� S

text: 151.2093� E

text: diseased

characteristic: host health state

text: homo sapien

characteristic: host scientific name

text: Yes

characteristic: is the sequenced pathogen host associated?

text: IPD

characteristic: isolate

text: Yes

characteristic: isolation source host associated

text: no

characteristic: isolation source non-host-associated

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: serovar

text: Serogroup 19

characteristic: strain

text: IPD


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TMU-RCCTM

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: dense settlement biome

characteristic: environment (biome)

text: rat-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: rat gut metagenome

text: Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats

characteristic: project name

text: rat gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene

characteristic: target subfragment

text: rat gut metagenome

characteristic: title


text: Vibrio cholerae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Vibrio cholerae

characteristic: common name

text: Vibrio cholerae

characteristic: organism

text: Vibrio cholerae

characteristic: subject id


text: IOR - Institute of Oncology Research

text: public

characteristic: SRA accession

tag: Namespace:IOR - Institute of Oncology Research

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: VCaP

characteristic: cell line

text: human

text: Protocols: For SPOP mutant over-expression a derivate of the pLX304 vector was used in which the CMV promoter has been exchanged to a PGK promoter and the blastocidin cassette exchanged by a puromycin resistance cassette (pLX_TRC_307, available at Addgene as Plasmid 62511, pCW107). All ORFs were cloned into pLX_TRC_307-mOrange using Nhe1 and Mlu1. ChIP was performed using the anti-ZMYND11 antibody (NBP2-20960, Novus Biologicals) VCaP were grown in DMEM (Gibco) and supplemented with 10% FBS (Gibco), 1% Penicilin/Streptomycin/L-Glutamate. All cells were incubated at 37°C and 5% CO2. Cells were routinely tested for mycoplasma contamination. DNA was extracted using the Quiagen kit and sample quality was assessed using Agilent Bioanalyzer. DNA libraries were prepared for sequencing using NEBNext® Ultra™ II DNA Library Prep Kit for Illumina®

characteristic: description

text: prostate carcinoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: prostate

characteristic: organism part

text: SPOP[WT] overexpression

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IOR - Institute of Oncology Research

text: public

text: ArrayExpress

text: VCaP

text: human

text: prostate carcinoma

text: Homo sapiens

text: Homo sapiens

text: prostate

text: SPOP[Y87C] overexpression

text: Homo sapiens

characteristic: title


text: male

characteristic: ArrayExpress-SEX

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Male

characteristic: gender

text: Homo sapiens

text: Homo sapiens


text: Amplexa Genetics

text: public

characteristic: SRA accession

tag: Namespace:Amplexa Genetics

characteristic: Submitter Id

characteristic: collection date

text: Atlantic herring

characteristic: description

text: Faroe Islands

characteristic: geographic location (country and/or sea)

text: Clupea harengus

characteristic: organism

text: Clupea harengus

text: Kidney

characteristic: tissue type

text: Herring sample for 10xG sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Amplexa Genetics

text: public

text: Atlantic herring

text: Faroe Islands

text: Clupea harengus

text: Clupea harengus

text: Kidney

text: Sample for ONT sequencing


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id

text: Klebsiella pneumoniae

characteristic: title


text: Homo sapiens

text: SC

characteristic: INSDC first public

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text: public

characteristic: INSDC status

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

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text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _L_IL10_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _IFNB_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _IL4_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _P3C_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _IFNG_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _sLPS_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _PIC_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _R848_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _MBP_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _CIL_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_naah_2 _Prec_D2


text: Mouse

characteristic: ArrayExpress-Phenotype

text: Mus musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Instituto de Salud Carlos III

text: public

text: sam_759bfbcf-cd11-4145-8f9f-4cdaf69f6591

characteristic: checklist

text: ISCIII

characteristic: collected by

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Symptomatic

characteristic: host disease status

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Instituto de Salud Carlos III

characteristic: INSDC center name

text: public

text: sam_9a711dee-fb56-4af1-b78d-32339c6f8aa5

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis

characteristic: title


text: Instituto de Salud Carlos III

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_77d08053-79f7-4d69-a0de-df5a214129bf

characteristic: Submitter Id

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

text: public

text: sam_ad18f104-544c-40f2-b8ca-f4bf513255da

characteristic: checklist

text: ISCIII

characteristic: collected by

characteristic: collection date

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

text: public

text: sam_c46a1ba7-c5f0-4e65-ab47-b8c67ff0eea2

text: ISCIII

text: Spain

characteristic: geographic location (country and/or sea)

text: Symptomatic

characteristic: host disease status

text: Homo sapiens

characteristic: host scientific name

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: ENA-CHECKLIST

text: Instituto de Salud Carlos III

text: public

text: sam_bca500be-31e2-4508-94c8-0a396e368e5f

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

characteristic: isolate

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Instituto de Salud Carlos III

text: public

text: sam_0b73775d-fb45-49ac-b571-5fbe306cb7b5

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_3067d011-3f2d-467b-bab1-470f28b13f86

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis

characteristic: title


text: Instituto de Salud Carlos III

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_6393faa4-de0b-4bd4-a357-be26cb14891d

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

text: public

text: sam_46dbbc40-a0a2-4593-bff7-3cea699ba81b

characteristic: Submitter Id

characteristic: checklist

text: ISCIII

characteristic: collected by

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

text: public

text: sam_d8ae9ad6-1ccf-4249-bf36-2e78f066d734

text: ISCIII

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Symptomatic

characteristic: host disease status

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: ENA-CHECKLIST

text: Instituto de Salud Carlos III

text: public

text: sam_985e0a9f-89a3-456d-a182-c454180e92ef

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MIO

text: public

text: Clostridiales bacterium 70B-A

characteristic: organism

text: Clostridiales bacterium 70B-A

text: Petrocella atlantisensis


characteristic: External Id

text: Instituto de Salud Carlos III

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: sam_9dd9f607-3082-478e-b8c7-88131a68f7e6

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


E-MTAB-6967:Sample 1

text: Cancer Research UK Cambridge Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 1

tag: Namespace:Cancer Research UK Cambridge Institute

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Embryos from the same stage were pooled, and single-cell suspensions were prepared by incubating the embryos with TrypLE Express dissociation reagent (Life Technologies) at 37 °C for 7 min and quenching with heat inactivated serum. Steps were performed according to manufacturers' instructions (10X Genomics, v1 chemistry). Steps were performed according to manufacturers' instructions (10X Genomics, v1 chemistry). Specific kits used were: Chromium Single Cell 3' Library Kit P/N 120230, Chromium Single Cell 3' Gel Bead Kit P/N 120231, Chromium Single Cell 3' Chip Kit P/N 120232.

characteristic: description

text: embryonic day 6.5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-6967:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 7.5

text: wild type genotype

text: embryo pool 3

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 3


E-MTAB-6967:Sample 9

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 9

text: ArrayExpress

text: house mouse

text: embryonic day 7.75

text: wild type genotype

text: embryo pool 8

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 9


E-MTAB-6967:Sample 10

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 10

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryonic day 7.0

characteristic: developmental stage

text: wild type genotype

text: embryo pool 9

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 10


E-MTAB-6967:Sample 11

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 11

text: ArrayExpress

text: house mouse

text: embryonic day 7.25

text: wild type genotype

characteristic: genotype

text: embryo pool 10

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 11


E-MTAB-6967:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 6

text: ArrayExpress

text: house mouse

text: embryonic day 7.5

text: wild type genotype

text: embryo pool 6

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 6

characteristic: title


E-MTAB-6967:Sample 4

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: embryonic day 7.5

text: wild type genotype

text: embryo pool 4

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 4


E-MTAB-6967:Sample 2

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 2

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryonic day 7.5

text: wild type genotype

text: embryo pool 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 2


E-MTAB-6967:Sample 7

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 7

text: ArrayExpress

text: house mouse

text: embryonic day 6.75

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 7

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 7


E-MTAB-6967:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 8

text: ArrayExpress

text: house mouse

text: embryonic day 7.75

text: wild type genotype

text: embryo pool 8

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 8


E-MTAB-6967:Sample 5

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 5

text: ArrayExpress

text: house mouse

text: embryonic day 6.5

text: wild type genotype

text: embryo pool 5

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 5

characteristic: title


E-MTAB-6967:Sample 15

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 15

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryonic day 7.0

text: wild type genotype

text: embryo pool 11

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 15


E-MTAB-6967:Sample 20

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 20

text: ArrayExpress

text: house mouse

text: embryonic day 7.5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 15

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 20


E-MTAB-6967:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 17

text: ArrayExpress

text: house mouse

text: embryonic day 8.5

text: wild type genotype

text: embryo pool 13

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 17


E-MTAB-6967:Sample 24

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 24

text: ArrayExpress

text: house mouse

text: embryonic day 8.25

text: wild type genotype

text: embryo pool 18

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 24


E-MTAB-6967:Sample 16

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 16

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 8.0

text: wild type genotype

text: embryo pool 12

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 16

characteristic: title


E-MTAB-6967:Sample 19

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 19

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 7.5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 15

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 19


E-MTAB-6967:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 14

text: ArrayExpress

text: house mouse

text: embryonic day 7.0

text: wild type genotype

text: embryo pool 11

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 14


E-MTAB-6967:Sample 22

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 22

text: ArrayExpress

text: house mouse

text: mixed

text: wild type genotype

text: embryo pool 16

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 22


E-MTAB-6967:Sample 21

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 21

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: mixed

text: wild type genotype

text: embryo pool 16

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 21


E-MTAB-6967:Sample 12

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 12

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 7.75

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 10

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 12

characteristic: title


E-MTAB-6967:Sample 28

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 28

text: ArrayExpress

text: house mouse

text: embryonic day 8.25

text: wild type genotype

text: embryo pool 20

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 28


E-MTAB-6967:Sample 25

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 25

text: ArrayExpress

text: house mouse

text: embryonic day 8.25

text: wild type genotype

text: embryo pool 18

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 25


E-MTAB-6967:Sample 26

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 26

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 7.25

text: wild type genotype

text: embryo pool 19

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 26


E-MTAB-6967:Sample 23

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 23

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 7.25

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 17

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 23


E-MTAB-6967:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 18

text: ArrayExpress

text: house mouse

text: embryonic day 6.5

text: wild type genotype

text: embryo pool 14

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 18

characteristic: title


E-MTAB-6967:Sample 27

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 27

text: ArrayExpress

text: house mouse

text: embryonic day 7.25

text: wild type genotype

text: embryo pool 19

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 27


E-MTAB-6967:Sample 13

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 13

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 7.75

text: wild type genotype

text: embryo pool 10

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 13


E-MTAB-6967:Sample 37

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 37

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 8.5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 26

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 37


E-MTAB-6967:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 33

text: ArrayExpress

text: house mouse

text: embryonic day 8.0

text: wild type genotype

text: embryo pool 24

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 33


E-MTAB-6967:Sample 31

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 31

text: ArrayExpress

text: house mouse

text: embryonic day 7.0

text: wild type genotype

text: embryo pool 23

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 31

characteristic: title


E-MTAB-6967:Sample 35

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 35

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 8.0

text: wild type genotype

text: embryo pool 24

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 35


E-MTAB-6967:Sample 36

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 36

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 8.5

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 25

characteristic: individual

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: Mus musculus

text: mixed

text: Sample 36


E-MTAB-6967:Sample 32

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Cancer Research UK Cambridge Institute

text: public

characteristic: SRA accession

text: E-MTAB-6967:Sample 32

text: ArrayExpress

text: house mouse

text: embryonic day 7.0

text: wild type genotype

text: embryo pool 23

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 32


E-MTAB-6967:Sample 29

characteristic: External Id

text: Cancer Research UK Cambridge Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6967:Sample 29

text: ArrayExpress

text: house mouse

text: embryonic day 8.5

text: wild type genotype

text: embryo pool 22

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 29


E-MTAB-6967:Sample 30

text: Cancer Research UK Cambridge Institute

text: public

characteristic: INSDC status

text: E-MTAB-6967:Sample 30

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: embryonic day 7.0

text: wild type genotype

text: embryo pool 23

text: Mus musculus

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 30

characteristic: title


E-MTAB-6967:Sample 34

text: Cancer Research UK Cambridge Institute

text: public

text: E-MTAB-6967:Sample 34

text: ArrayExpress

text: house mouse

characteristic: description

text: embryonic day 8.0

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: embryo pool 24

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: Mus musculus

text: mixed

text: Sample 34


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Instituto de Salud Carlos III

text: public

characteristic: SRA accession

text: sam_005013ef-4902-46c8-9729-d044a2568d37

characteristic: checklist

text: ISCIII

characteristic: collected by

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Symptomatic

characteristic: host disease status

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: External Id

text: Instituto de Salud Carlos III

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sam_7da37b96-ec6a-4de1-9c90-6c1b23fdd164

characteristic: Submitter Id

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Instituto de Salud Carlos III

text: public

text: sam_ebb489ce-69b3-4e2a-9905-d6830a936f6a

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

characteristic: organism

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


characteristic: ENA-LAST-UPDATE

text: Instituto de Salud Carlos III

text: public

characteristic: SRA accession

text: sam_20b19032-61be-4201-a229-7a7f6090db7b

characteristic: checklist

text: ISCIII

text: Spain

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: Instituto de Salud Carlos III

text: public

text: sam_c30bbe87-3455-4615-be9b-48d899a704af

text: ISCIII

characteristic: collected by

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: Symptomatic

text: Homo sapiens

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Salmonella enterica subsp. enterica

text: Grumpensis


text: IMPERIAL COLLEGE LONDON

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

text: Cryptococcus neoformans

text: Cryptococcus neoformans

text: Single end reads of Cryptococcus neoformans


text: FSCEATB FEB RAS

text: public

tag: Namespace:FSCEATB FEB RAS

text: Valchuk O.P.

text: Kamchatka Lwaf Warbler

characteristic: common name

text: migrant

characteristic: description

text: Russia, Sakhalin Island

characteristic: geographic location (region and locality)

text: Seicercus examinandus

text: Seicercus examinandus

text: Ph. b. examinandus-8


characteristic: External Id

text: FSCEATB FEB RAS

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Valchuk O.P.

text: Kamchatka Lwaf Warbler

text: migrant

text: Russia, Sakhalin Island

text: Seicercus examinandus

text: Seicercus examinandus

text: Ph. b. examinandus-9


text: FSCEATB FEB RAS

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Valchuk O.P.

text: Kamchatka Lwaf Warbler

text: nesting

text: Russia, Sakhalin Island

text: Seicercus examinandus

text: Seicercus examinandus

text: Ph. b. examinandus-48-13


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SUN YAT-SEN UNIVERISTY

text: public

tag: Namespace:SUN YAT-SEN UNIVERISTY

text: sediment

characteristic: environment (biome)

text: river

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: China

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: sediment bacterium 15-27

characteristic: project name

text: sediment bacterium 15-27

text: sediment

characteristic: sediment environmental package

text: Illumina miseq

characteristic: sequencing method

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Haematology, University of Cambridge, Cambridge, UK Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, Wellcome Trust - Medical Research Council Cambridge Stem Cell Institute, Cambridge, UK

text: public

characteristic: INSDC status

tag: Namespace:Department of Haematology, University of Cambridge, Cambridge, UK Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, Cambridge, UK

characteristic: Submitter Id

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: Protocols: The guts were dissected and placed in ice cold PBS/5% foetal bovine serum. Single cell suspensions were generated by first passing through a 40 µm strainer using the plunger of a 1 ml syringe as a pestle. These were then passed through a 20 µm strainer before adding 4',6-diamidino-2-phenylindole (DAPI, Beckman Coulter, cat no B30437) to the samples. Three zebrafish, per each condition (i.e. zebrafish intraperitoneally injected with PBS, lyophilised Anisakis simplex or inactivated Vibrio anguillarum), were used to collect the total of 12,000 lck+ cells (4000 per zebrafish) for 10x experiment. Cell were sorted into 1.5 ml Eppendorf tubes containing 20 l 5% FBS in PBS using a BD Influx Index Sorter. Following the sorting, cells were spun down and resuspended in ice cold PBS with 0.04% bovine serum albumin at the concentration of 500 cells/μl. Briefly, cellular suspension was added to the master mix containing nuclease-free water, RT Reagent Mix, RT Primer, Additive A and RT Enzyme Mix. Master mix with cells was transferred to the wells in the row labelled 1 on the Chromium™ Single Cell A Chip (10x Genomics). Single Cell 3’ Gel Beads were transferred into the row labelled 2 and Partitioning Oil was transferred into the row labelled 3. The chip was loaded on Chromium™ Controller to generate single-cell GEMs. GEM-RT was performed in a C1000 Touch Thermal cycler (Bio-Rad) at the following conditions: 53°C for 45 min, 85°C for 5 min, held at 4°C. Post GEM-RT cleanup was performed with DynaBeads MyOne Silane Beads (Thermo Fisher Scientific). cDNA was amplified using C1000 Touch Thermal cycler at the following conditions: 98°C for 3 min, 12 cycles of (90°C for 15 s, 67°C for 20 s and 72°C for 1 min), 72°C for 1 min, held 4°C. Amplified cDNA was cleaned with the SPRIselect Reagent Kit (Beckman Coulter) and quality was assessed using 2100 Bioanalyser (Agilent). Libraries were constructed using Chromium™ Controller and Chromium™ Single Cell 3’ Library & Gel Bead Kit v2 (10x Genomics) according to the manufacturer’s protocol. Briefly, for fragmentation, end-repair and A-tailing cDNA was incubated with Fragmentation Mix in pre-cooled thermocycler at the following conditions: 32°C for 5 min, 65°C for 30 min, held at 4°C. The libraries were then purified using beads. Next adaptor ligation was performed, samples were incubated with Adaptor Ligation Mix at 20°C for 15 min followed by post-ligation clean-up with beads and Sample Index PCR. Again libraries were purified using beads. Following a final Bioanalyzer quality check, the libraries were diluted to the concentration required for sequencing.

characteristic: description

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP); Rag1 homozygous knockout

characteristic: genotype

text: pool 1

characteristic: individual

text: Danio rerio

text: Danio rerio

text: intestine

characteristic: organism part

text: lck positive

characteristic: phenotype

text: Danio rerio

text: female

characteristic: sex

text: AB

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: zebrafish

characteristic: common name

text: adult

text: Tg(lck:EGFP); Rag1 homozygous knockout

text: pool 2

text: Danio rerio

text: Danio rerio

text: intestine

text: lck positive

text: Danio rerio

text: female

text: AB

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: zebrafish

text: adult

text: Tg(lck:EGFP); Rag1 homozygous knockout

text: pool 3

text: Danio rerio

characteristic: organism

text: Danio rerio

text: intestine

text: lck positive

text: Danio rerio

text: female

text: AB


text: public

text: ArrayExpress

text: zebrafish

characteristic: description

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP)

characteristic: genotype

text: pool 4

characteristic: individual

text: Danio rerio

text: Danio rerio

text: intestine

characteristic: organism part

text: lck positive

characteristic: phenotype

text: Danio rerio

text: 2 female, 1 male

characteristic: sex

text: AB


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Solobacterium sp.

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run ERR1018204

text: human gut

characteristic: isolation source

text: uncultured Solobacterium sp.

characteristic: sample derived from

text: uncultured Solobacterium sp.

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: uncultured Dysgonomonas sp.

characteristic: common name

text: This sample represents a MAG from the metagenomic run ERR1190731

characteristic: description

text: human gut

text: uncultured Dysgonomonas sp.

characteristic: organism

text: uncultured Dysgonomonas sp.

text: Metagenome-Assembled Genome (MAG)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

text: uncultured Acidaminococcus sp.

text: This sample represents a MAG from the metagenomic run ERR1190931

text: human gut

text: uncultured Acidaminococcus sp.

text: uncultured Acidaminococcus sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured Butyrivibrio sp.

text: This sample represents a MAG from the metagenomic run ERR1305901

text: human gut

text: uncultured Butyrivibrio sp.

text: uncultured Butyrivibrio sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Collinsella sp.

text: This sample represents a MAG from the metagenomic run ERR1620321

text: human gut

text: uncultured Collinsella sp.

text: uncultured Collinsella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Erysipelotrichaceae bacterium

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run ERR1620345

text: human gut

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Veillonella sp.

text: This sample represents a MAG from the metagenomic run ERR866561

text: human gut

characteristic: isolation source

text: uncultured Veillonella sp.

characteristic: sample derived from

text: uncultured Veillonella sp.

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: uncultured Veillonella sp.

text: This sample represents a MAG from the metagenomic run SRR1779122

text: human gut

text: uncultured Veillonella sp.

text: uncultured Veillonella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: uncultured Slackia sp.

text: This sample represents a MAG from the metagenomic run SRR5056714

text: human gut

text: uncultured Slackia sp.

text: uncultured Slackia sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Sutterella sp.

characteristic: common name

text: This sample represents a MAG from the metagenomic run SRR5106488

characteristic: description

text: human gut

text: uncultured Sutterella sp.

text: uncultured Sutterella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Veillonella sp.

text: This sample represents a MAG from the metagenomic run SRR5275431

text: human gut

text: uncultured Veillonella sp.

characteristic: organism

text: uncultured Veillonella sp.

text: Metagenome-Assembled Genome (MAG)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

text: uncultured Megasphaera sp.

text: This sample represents a MAG from the metagenomic run SRR5275454

text: human gut

text: uncultured Megasphaera sp.

text: uncultured Megasphaera sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured Catenibacterium sp.

text: This sample represents a MAG from the metagenomic run SRR5275463

text: human gut

text: uncultured Catenibacterium sp.

text: uncultured Catenibacterium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Veillonella sp.

text: This sample represents a MAG from the metagenomic run SRR6257487

text: human gut

text: uncultured Veillonella sp.

text: uncultured Veillonella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridium sp.

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run SRR3737013

text: human gut

text: uncultured Clostridium sp.

text: uncultured Clostridium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Porphyromonas sp.

text: This sample represents a MAG from the metagenomic run SRR1215278

text: human gut

characteristic: isolation source

text: uncultured Porphyromonas sp.

characteristic: sample derived from

text: uncultured Porphyromonas sp.

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: uncultured Megasphaera sp.

text: This sample represents a MAG from the metagenomic run ERR1620346

text: human gut

text: uncultured Megasphaera sp.

text: uncultured Megasphaera sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: uncultured Clostridiales bacterium

text: This sample represents a MAG from the metagenomic run ERR525840

text: human gut

text: uncultured Clostridiales bacterium

text: uncultured Clostridiales bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridiales bacterium

characteristic: common name

text: This sample represents a MAG from the metagenomic run SRR6028431

characteristic: description

text: human gut

text: uncultured Clostridiales bacterium

text: uncultured Clostridiales bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Megasphaera sp.

text: This sample represents a MAG from the metagenomic run SRR5056950

text: human gut

text: uncultured Megasphaera sp.

characteristic: organism

text: uncultured Megasphaera sp.

text: Metagenome-Assembled Genome (MAG)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

text: uncultured Eggerthella sp.

text: This sample represents a MAG from the metagenomic run ERR1953518

text: human gut

text: uncultured Eggerthella sp.

text: uncultured Eggerthella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured Porphyromonadaceae bacterium

text: This sample represents a MAG from the metagenomic run SRR5580035

text: human gut

text: uncultured Porphyromonadaceae bacterium

text: uncultured Porphyromonadaceae bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Butyricimonas sp.

text: This sample represents a MAG from the metagenomic run ERR525845

text: human gut

text: uncultured Butyricimonas sp.

text: uncultured Butyricimonas sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Mollicutes bacterium

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run ERR209229

text: human gut

text: uncultured Mollicutes bacterium

text: uncultured Mollicutes bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Desulfovibrio sp.

text: This sample represents a MAG from the metagenomic run ERR912037

text: human gut

characteristic: isolation source

text: uncultured Desulfovibrio sp.

characteristic: sample derived from

text: uncultured Desulfovibrio sp.

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: uncultured Mollicutes bacterium

text: This sample represents a MAG from the metagenomic run ERR1018211

text: human gut

text: uncultured Mollicutes bacterium

text: uncultured Mollicutes bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: uncultured Eggerthella sp.

text: This sample represents a MAG from the metagenomic run SRR4481738

text: human gut

text: uncultured Eggerthella sp.

text: uncultured Eggerthella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridium sp.

characteristic: common name

text: This sample represents a MAG from the metagenomic run ERR1578662

characteristic: description

text: human gut

text: uncultured Clostridium sp.

text: uncultured Clostridium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridium sp.

text: This sample represents a MAG from the metagenomic run ERR525726

text: human gut

text: uncultured Clostridium sp.

characteristic: organism

text: uncultured Clostridium sp.

text: Metagenome-Assembled Genome (MAG)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

text: uncultured Blautia sp.

text: This sample represents a MAG from the metagenomic run SRR5056824

text: human gut

text: uncultured Blautia sp.

text: uncultured Blautia sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured Lachnospira sp.

text: human gut

text: uncultured Lachnospira sp.

text: uncultured Lachnospira sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Ruminococcus sp.

text: This sample represents a MAG from the metagenomic run ERR209883

text: human gut

text: uncultured Ruminococcus sp.

text: uncultured Ruminococcus sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Eubacterium sp.

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run ERR525754

text: human gut

text: uncultured Eubacterium sp.

text: uncultured Eubacterium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Ruminococcus sp.

text: This sample represents a MAG from the metagenomic run SRR2912796

text: human gut

characteristic: isolation source

text: uncultured Ruminococcus sp.

characteristic: sample derived from

text: uncultured Ruminococcus sp.

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: uncultured Anaeromassilibacillus sp.

text: This sample represents a MAG from the metagenomic run SRR5275454

text: human gut

text: uncultured Anaeromassilibacillus sp.

text: uncultured Anaeromassilibacillus sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: uncultured Lachnospira sp.

text: This sample represents a MAG from the metagenomic run SRR5279256

text: human gut

text: uncultured Lachnospira sp.

text: uncultured Lachnospira sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Coprococcus sp.

characteristic: common name

text: This sample represents a MAG from the metagenomic run SRR5558411

characteristic: description

text: human gut

text: uncultured Coprococcus sp.

text: uncultured Coprococcus sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Peptoniphilus sp.

text: This sample represents a MAG from the metagenomic run SRR5963149

text: human gut

text: uncultured Peptoniphilus sp.

characteristic: organism

text: uncultured Peptoniphilus sp.

text: Metagenome-Assembled Genome (MAG)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

text: uncultured Peptoniphilus sp.

text: This sample represents a MAG from the metagenomic run SRR5963382

text: human gut

text: uncultured Peptoniphilus sp.

text: uncultured Peptoniphilus sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured Clostridiales bacterium

text: This sample represents a MAG from the metagenomic run ERR688533

text: human gut

text: uncultured Clostridiales bacterium

text: uncultured Clostridiales bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Pantoea sp.

text: This sample represents a MAG from the metagenomic run SRR6257398

text: human gut

text: uncultured Pantoea sp.

text: uncultured Pantoea sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Porphyromonadaceae bacterium

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run ERR321293

text: human gut

text: uncultured Porphyromonadaceae bacterium

text: uncultured Porphyromonadaceae bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Porphyromonadaceae bacterium

text: This sample represents a MAG from the metagenomic run SRR5558054

text: human gut

characteristic: isolation source

text: uncultured Porphyromonadaceae bacterium

characteristic: sample derived from

text: uncultured Porphyromonadaceae bacterium

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: uncultured Alistipes sp.

text: This sample represents a MAG from the metagenomic run ERR1293691

text: human gut

text: uncultured Alistipes sp.

text: uncultured Alistipes sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: uncultured Collinsella sp.

text: This sample represents a MAG from the metagenomic run ERR1018207

text: human gut

text: uncultured Collinsella sp.

text: uncultured Collinsella sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridium sp.

characteristic: common name

text: This sample represents a MAG from the metagenomic run ERR1913027

characteristic: description

text: human gut

text: uncultured Clostridium sp.

text: uncultured Clostridium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridium sp.

text: This sample represents a MAG from the metagenomic run ERR209740

text: human gut

text: uncultured Clostridium sp.

characteristic: organism

text: uncultured Clostridium sp.

text: Metagenome-Assembled Genome (MAG)

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EBI

text: public

text: uncultured Pantoea sp.

text: This sample represents a MAG from the metagenomic run SRR3131812

text: human gut

text: uncultured Pantoea sp.

text: uncultured Pantoea sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: uncultured Clostridium sp.

text: This sample represents a MAG from the metagenomic run SRR5279309

text: human gut

text: uncultured Clostridium sp.

text: uncultured Clostridium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: uncultured Corynebacterium sp.

text: This sample represents a MAG from the metagenomic run SRR3132109

text: human gut

text: uncultured Corynebacterium sp.

text: uncultured Corynebacterium sp.

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Clostridiales bacterium

characteristic: completeness

characteristic: contamination

text: This sample represents a MAG from the metagenomic run SRR2155361

text: human gut

text: uncultured Clostridiales bacterium

text: uncultured Clostridiales bacterium

text: Metagenome-Assembled Genome (MAG)


text: EBI

text: public

text: uncultured Eubacterium sp.

text: This sample represents a MAG from the metagenomic run ERR589527

text: human gut

characteristic: isolation source

text: uncultured Eubacterium sp.

characteristic: sample derived from

text: uncultured Eubacterium sp.

text: Metagenome-Assembled Genome (MAG)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EBI

text: public

text: uncultured Dialister sp.

text: This sample represents a MAG from the metagenomic run SRR5106285

text: human gut

text: uncultured Dialister sp.

text: uncultured Dialister sp.

text: Metagenome-Assembled Genome (MAG)