characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5049:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: oceanic epipelagic zone biome [ENVO:01000035]

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

characteristic: title

text: water


status: PUBLIC

tag: attribute

text: GFBIO

text: public

text: 5048:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

text: 16s rRNA tag sequencing data from samples taken throughout the water column (20 - 5000m depth) along the SO245 Ultrapac cruise which crossed through the South Pacific Gyre. Samples were samples from a CTD and directly filtered on 0,2µm polycarbondate filters. DNA extraction, PCR, sequencing and data analysis were all carried out on-board directly after sampling. Samples were not frozen at any time.

characteristic: environment (biome)

text: oceanic zone [ENVO:01000033]|oceanic gyre [ENVO:01000074]

characteristic: environment (feature)

text: sea water [ENVO:00002149]|oligotrophic water [ENVO:00002223]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

text: SO245 On-board Sequencing and Data Analysis. MPG funded research project.

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5047:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

characteristic: title

text: water


text: GFBIO

text: public

text: 5046:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5045:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

text: water

characteristic: water environmental package


text: GFBIO

text: public

text: 5044:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5043:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

characteristic: target subfragment

text: water


text: GFBIO

text: public

text: 5042:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5041:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

characteristic: title

text: water


text: GFBIO

text: public

text: 5040:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5039:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

text: water

characteristic: water environmental package


text: GFBIO

text: public

text: 5038:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5037:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

characteristic: target subfragment

text: water


text: GFBIO

text: public

text: 5036:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

text: oceanic epipelagic zone biome [ENVO:01000035]

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 5182:8816016b-ad0d-478c-8d45-7c7f1ead80f1

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

characteristic: collection date

text: 16s rRNA tag sequencing data from samples taken throughout the water column (20 - 5000m depth) along the SO245 Ultrapac cruise which crossed through the South Pacific Gyre. Samples were samples from a CTD and directly filtered on 0,2µm polycarbondate filters. DNA extraction, PCR, sequencing and data analysis were all carried out on-board directly after sampling. Samples were not frozen at any time.

characteristic: description

text: water

text: Atlantic Ocean

text: mimarks-survey

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Ion Torrent PGM

text: true

text: 16S rRNA

characteristic: title

text: water


text: GFBIO

text: public

text: 5181:8816016b-ad0d-478c-8d45-7c7f1ead80f1

text: GFBIO

characteristic: environment (biome)

text: oceanic zone [ENVO:01000033]|oceanic gyre [ENVO:01000074]

characteristic: environment (feature)

text: sea water [ENVO:00002149]|oligotrophic water [ENVO:00002223]

characteristic: environment (material)

text: water

characteristic: environmental package

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: marine metagenome

characteristic: pangaea event label

characteristic: project name

text: marine metagenome

text: Ion Torrent PGM

characteristic: sequencing method

text: true

characteristic: submitted to INSDC

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment

text: water


text: Mycoplasma arthritidis

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Mycoplasma arthritidis

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

characteristic: isolation source

text: Mycoplasma arthritidis

characteristic: organism

text: Mycoplasma arthritidis

text: not available: to be reported later

characteristic: serovar

text: Rat

characteristic: specific host

characteristic: strain

characteristic: subject id


text: Helicobacter cinaedi

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Helicobacter cinaedi

text: disease

text: Blood

text: Helicobacter cinaedi

text: Helicobacter cinaedi

text: not available: to be reported later

text: Dog

characteristic: title


text: Helicobacter pylori

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Helicobacter pylori

text: Nigeria

characteristic: country

text: not available: to be reported later

text: not available: to be reported later

text: Helicobacter pylori

text: Helicobacter pylori

text: not available: to be reported later

text: not available: to be reported later


text: Helicobacter canis

text: SC

text: public

text: Helicobacter canis

characteristic: common name

text: Italy

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: Faeces

characteristic: isolation source

text: Helicobacter canis

characteristic: organism

text: Helicobacter canis

text: not available: to be reported later

characteristic: serovar

text: Dog

characteristic: specific host

characteristic: strain


text: Shewanella putrefaciens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Shewanella putrefaciens

text: Cutting Oils

text: Shewanella putrefaciens

text: Shewanella putrefaciens

text: not available: to be reported later

text: environmental

characteristic: subject id

characteristic: title


text: Helicobacter cholecystus

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Helicobacter cholecystus

text: not available: to be reported later

text: not available: to be reported later

text: Helicobacter cholecystus

text: Helicobacter cholecystus

text: not available: to be reported later

text: not available: to be reported later


text: Helicobacter pylori

text: SC

text: public

text: Helicobacter pylori

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

characteristic: isolation source

text: Helicobacter pylori

characteristic: organism

text: Helicobacter pylori

text: not available: to be reported later

characteristic: serovar

text: not available: to be reported later

characteristic: specific host


text: Helicobacter mustelae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Helicobacter mustelae

text: not available: to be reported later

text: Gastric mucosa

text: Helicobacter mustelae

text: Helicobacter mustelae

text: not available: to be reported later

text: Ferret

characteristic: strain


text: Helicobacter canadensis

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Helicobacter canadensis

text: not available: to be reported later

text: not available: to be reported later

text: Helicobacter canadensis

text: Helicobacter canadensis

text: not available: to be reported later

text: not available: to be reported later

characteristic: subject id

characteristic: title


text: Helicobacter cinaedi

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Helicobacter cinaedi

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: Faeces

characteristic: isolation source

text: Helicobacter cinaedi

characteristic: organism

text: Helicobacter cinaedi

text: not available: to be reported later

text: Dog


text: Helicobacter pylori

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Helicobacter pylori

text: not available: to be reported later

text: Gastric antrum

text: Helicobacter pylori

text: Helicobacter pylori

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host


text: Acholeplasma axanthum

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acholeplasma axanthum

text: Murine leukaemia tissue culture cell line

text: Acholeplasma axanthum

text: Acholeplasma axanthum

text: not available: to be reported later

text: environmental

characteristic: strain


text: Streptococcus agalactiae

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Streptococcus agalactiae

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: not available: to be reported later

text: Streptococcus agalactiae

text: Streptococcus agalactiae

text: not available: to be reported later

text: not available: to be reported later

characteristic: subject id

characteristic: title


text: Campylobacter hyointestinalis

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Campylobacter hyointestinalis

text: not available: to be reported later

text: Intestine

characteristic: isolation source

text: Campylobacter hyointestinalis

characteristic: organism

text: Campylobacter hyointestinalis

text: not available: to be reported later

text: Porcine


text: Arcobacter nitrofigilis

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Arcobacter nitrofigilis

text: not available: to be reported later

text: Roots

text: Arcobacter nitrofigilis

text: Arcobacter nitrofigilis

text: not available: to be reported later

characteristic: serovar

text: Plant (Spartina alterniflora)

characteristic: specific host


text: Acholeplasma oculi

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Acholeplasma oculi

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

characteristic: host status

text: Eye

text: Acholeplasma oculi

text: Acholeplasma oculi

text: not available: to be reported later

text: Goat

characteristic: strain


text: Mycoplasma arginini

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Mycoplasma arginini

text: disease

text: Brain

text: Mycoplasma arginini

text: Mycoplasma arginini

text: not available: to be reported later

text: Mouse

characteristic: subject id

characteristic: title


text: Acholeplasma hippikon

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Acholeplasma hippikon

text: disease

text: Lung of aborted horse fetus

characteristic: isolation source

text: Acholeplasma hippikon

characteristic: organism

text: Acholeplasma hippikon

text: not available: to be reported later

text: Horse


text: Mobiluncus mulieris

text: SC

text: public

characteristic: Submitter Id

characteristic: anonymized name

characteristic: collection date

text: Mobiluncus mulieris

characteristic: common name

text: United Kingdom: Newcastle

characteristic: country

characteristic: culture collection

text: not available: to be reported later

text: High vaginal swab

text: Mobiluncus mulieris

text: Mobiluncus mulieris

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: specific host


text: Rothia dentocariosa

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Rothia dentocariosa

text: disease

characteristic: host status

text: Carious teeth

text: Rothia dentocariosa

text: Rothia dentocariosa

text: not available: to be reported later

text: not available: to be reported later

characteristic: strain

characteristic: subject id


text: Campylobacter lanienae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Campylobacter lanienae

text: not available: to be reported later

text: Faeces

characteristic: isolation source

text: Campylobacter lanienae

characteristic: organism

text: Campylobacter lanienae

text: not available: to be reported later

text: Pig

characteristic: title


text: SC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Corynebacterium striatum

characteristic: common name

characteristic: culture collection

text: not available

text: not available

text: Corynebacterium striatum

text: Corynebacterium striatum

text: not available

characteristic: serovar

text: not available

characteristic: specific host


text: Cellulosimicrobium terreum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: anonymized name

text: Cellulosimicrobium terreum

text: South Korea: Dokdo

characteristic: country

text: Soil

text: Cellulosimicrobium terreum

text: Cellulosimicrobium terreum

text: not available: to be reported later

text: environmental


text: Arcobacter skirrowii

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Arcobacter skirrowii

text: United Kingdom: Loughborough

text: not available: to be reported later

characteristic: host status

text: Faeces

text: Arcobacter skirrowii

text: Arcobacter skirrowii

text: not available: to be reported later

text: Lamb

characteristic: strain

characteristic: subject id


text: Prevotella pallens

text: SC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Prevotella pallens

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: Oral cavity

characteristic: isolation source

text: Prevotella pallens

characteristic: organism

text: Prevotella pallens

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: title


text: Afipia felis

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: anonymized name

text: cat scratch disease bacillus

text: USA: Hawaii (State)

characteristic: country

text: not available: to be reported later

text: Lymph node aspirate

text: Afipia felis

text: Afipia felis

text: not available: to be reported later

text: Human (4yr old girl)

characteristic: specific host


text: Prevotella buccae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Prevotella buccae

text: not available: to be reported later

characteristic: host status

text: Dental plaque

text: Prevotella buccae

text: Prevotella buccae

text: not available: to be reported later

text: not available: to be reported later

characteristic: strain

characteristic: subject id


text: Peptoniphilus harei

text: SC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Peptoniphilus harei

characteristic: common name

text: United Kingdom

characteristic: culture collection

text: disease

text: Pus

characteristic: isolation source

text: Peptoniphilus harei

characteristic: organism

text: Peptoniphilus harei

text: not available: to be reported later

characteristic: serovar

text: Human

characteristic: title


text: Peptoniphilus ivorii

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: anonymized name

text: Peptoniphilus ivorii

text: United Kingdom

characteristic: country

text: disease

text: Abdominal skin swab

text: Peptoniphilus ivorii

text: Peptoniphilus ivorii

text: not available: to be reported later

text: Human

characteristic: specific host


text: Enterococcus cecorum

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Enterococcus cecorum

text: not available: to be reported later

characteristic: host status

text: Caecum

text: Enterococcus cecorum

text: Enterococcus cecorum

text: not available: to be reported later

text: Bird (Chicken)

characteristic: strain

characteristic: subject id


text: Burkholderia gladioli

text: SC

text: public

characteristic: Submitter Id

characteristic: collection date

text: Burkholderia gladioli

characteristic: common name

characteristic: culture collection

text: not available: to be reported later

text: not available: to be reported later

characteristic: isolation source

text: Burkholderia gladioli

characteristic: organism

text: Burkholderia gladioli

text: not available: to be reported later

characteristic: serovar

text: Plant (Gladiolus species)

characteristic: title


text: Oligella ureolytica

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: anonymized name

text: Oligella ureolytica

text: Sweden

characteristic: country

text: disease

text: Cerebrospinal fluid

text: Oligella ureolytica

text: Oligella ureolytica

text: not available: to be reported later

text: not available: to be reported later

characteristic: specific host


text: Klebsiella pneumoniae

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Klebsiella pneumoniae

text: UK

text: not available

characteristic: host status

text: not available

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: not available

text: human

characteristic: strain

characteristic: subject id


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single homozygous male E9.5 28 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 27 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 28 somite mouse embryo, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 27 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single homozygous male E9.5 26 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 26 somite mouse embryo, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 26 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 25 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 26 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype male E9.5 25 somite mouse embryo, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 23 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 24 somite mouse embryo, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Trps1_em1(EUCOMM)Wtsi, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 23 somite mouse embryo, with heterozygous Trps1 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous male E9.5 24 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 24 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 23 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 26 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 24 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype female E9.5 19 somite mouse embryo, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 26 somite mouse embryo, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 21 somite mouse embryo, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 25 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 25 somite mouse embryo, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single homozygous male E9.5 18 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 24 somite mouse embryo, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 24 somite mouse embryo, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as heterozygous. However, lacZ expression detected in the sequence suggests wildtype, therefore the genotype has been altered accordingly. Using the yolk sac the embryo was originally sexed as male, however, analysis of Xist and Y chromosome genes in the sequence data suggests female and the gender has been altered accordingly.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 21 somite mouse embryo for allele Zkscan14_em1(EUCOMM)Wtsi, with heterozygous Zkscan14 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as heterozygous. However, lacZ expression detected in the sequence suggests homozygous, therefore the genotype has been altered accordingly. Using the yolk sac the embryo was originally sexed as female, however, analysis of Xist and Y chromosome genes in the sequence data suggests male and the gender has been altered accordingly.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 25 somite mouse embryo, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous female E9.5 23 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 24 somite mouse embryo, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 26 somite mouse embryo, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 23 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 23 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous male E9.5 24 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 22 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 26 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 25 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Using the yolk sac the embryo was originally sexed as male, however, analysis of Xist and Y chromosome genes in the sequence data suggests female and the gender has been altered accordingly.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 26 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single homozygous female E9.5 24 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 24 somite mouse embryo for allele Zkscan17_em1(EUCOMM)Wtsi, with heterozygous Zkscan17 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 25 somite mouse embryo, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous male E9.5 25 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 26 somite mouse embryo, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype female E9.5 25 somite mouse embryo, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 25 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 26 somite mouse embryo, with heterozygous Map2k717 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 26 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single homozygous male E9.5 27 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 27 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 25 somite mouse embryo for allele Map2k7_em1(EUCOMM)Wtsi, with heterozygous Map2k7 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 25 somite mouse embryo, with heterozygous Map2k717 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 17 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype female E9.5 24 somite mouse embryo, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 24 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 24 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 24 somite mouse embryo, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as heterozygous. However, lacZ expression detected in the sequence suggests wildtype therefore the genotype has been altered accordingly. Using the yolk sac the embryo was originally sexed as male, however, analysis of Xist and Y chromosome genes in the sequence data suggests female and the gender has been altered accordingly.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous female E9.5 25 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 20 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 18 somite mouse embryo, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 8 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: male

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as wildtype. However, lacZ expression detected in the sequence suggests heterozygous therefore the genotype has been altered accordingly.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single wildtype male E9.5 24 somite mouse embryo, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 20 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 23 somite mouse embryo for allele Mad2l2_em1(EUCOMM)Wtsi, with heterozygous Mad2l2 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 24 somite mouse embryo, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 25 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous male E9.5 25 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 13 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: male

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 25 somite mouse embryo, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 26 somite mouse embryo, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 26 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

characteristic: ArrayExpress-StrainOrLine

text: SC

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Mus musculus

characteristic: organism

text: Total RNA from a single heterozygous male E9.5 26 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype female E9.5 25 somite mouse embryo, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

characteristic: sample description

text: Mus musculus

characteristic: title


text: whole embryo

text: female

text: Mus Musculus

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single heterozygous female E9.5 8 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project. Embryo was originally genotyped by detecting disrupted allele with qPCR on yolk sac DNA as homozygous. However, lacZ expression detected in the sequence suggests heterozygous therefore the genotype has been altered accordingly.

text: Mus musculus


text: whole embryo

text: male

text: Mus Musculus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: Mus musculus

text: Total RNA from a single wildtype male E9.5 23 somite mouse embryo, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus

characteristic: strain


characteristic: ArrayExpress-DevelopmentalStage

text: whole embryo

characteristic: ArrayExpress-OrganismPart

text: female

characteristic: ArrayExpress-Sex

text: Mus Musculus

characteristic: ArrayExpress-Species

text: SC

text: public

text: house mouse

text: Mus musculus

text: Total RNA from a single homozygous female E9.5 9 somite mouse embryo for allele Zfyve20_em1(EUCOMM)Wtsi, with heterozygous Zfyve20 / C57BL/6N parents. This study forms part of the Deciphering the Mechanisms of Developmental Disorders (DMDD) project.

text: Mus musculus


text: GFBIO

text: public

text: 2400:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Saliva T1

characteristic: description

text: anthropogenic terrestrial biome [ENVO:01000219]

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: saliva [UBERON:0001836]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: saliva

characteristic: host body product

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

text: initial denaturation:96degC_2min; annealing:96degC_15s; elongation: 50degC_50s; final elongation:70degC_90s

characteristic: pcr conditions

text: FWD:NNNNNNNNNTCCTACGGGNGGCWGCAG; REV:NNNNNNNNNNTGACTACHVGGGTATCTAAKCC

characteristic: pcr primers

characteristic: project name

unit: °C

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2401:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Saliva T2

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: saliva [UBERON:0001836]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: Mucositis grade 1

characteristic: nose/mouth/teeth/throat disorder

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2402:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Saliva T4

text: mouth [UBERON:0000165]

text: saliva [UBERON:0001836]

text: Belgium

characteristic: host age

text: saliva

characteristic: host body product

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2403:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Saliva T6

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: saliva [UBERON:0001836]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

text: public

text: 2404:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Saliva T8

text: mouth [UBERON:0000165]

text: saliva [UBERON:0001836]

text: Belgium

characteristic: host age

text: saliva

characteristic: host body product

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2405:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Saliva T9

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: saliva [UBERON:0001836]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

text: public

text: 2406:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Saliva T10

text: mouth [UBERON:0000165]

text: saliva [UBERON:0001836]

text: Belgium

characteristic: host age

text: saliva

characteristic: host body product

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2407:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Saliva T12

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: saliva [UBERON:0001836]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

text: public

text: 2408:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Saliva T14

text: mouth [UBERON:0000165]

text: saliva [UBERON:0001836]

text: Belgium

characteristic: host age

text: saliva

characteristic: host body product

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2409:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Saliva T16

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: saliva [UBERON:0001836]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: saliva

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

text: public

text: 2410:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Saliva T19

text: mouth [UBERON:0000165]

text: saliva [UBERON:0001836]

text: Belgium

characteristic: host age

text: saliva

characteristic: host body product

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2411:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Buccal T1

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: mouth mucosa [UBERON:0003729]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Epithelium of mucosa of mouth

characteristic: host body site

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2412:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Buccal T2

text: mouth [UBERON:0000165]

text: mouth mucosa [UBERON:0003729]

text: Belgium

characteristic: host age

text: Epithelium of mucosa of mouth

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: Mucositis grade 1

characteristic: nose/mouth/teeth/throat disorder

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2413:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Buccal T4

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: mouth mucosa [UBERON:0003729]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Epithelium of mucosa of mouth

characteristic: host body site

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2414:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Buccal T6

text: mouth [UBERON:0000165]

text: mouth mucosa [UBERON:0003729]

text: Belgium

characteristic: host age

text: Epithelium of mucosa of mouth

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2415:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Buccal T8

characteristic: description

text: anthropogenic terrestrial biome [ENVO:01000219]

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: mouth mucosa [UBERON:0003729]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Epithelium of mucosa of mouth

characteristic: host body site

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2416:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Buccal T9

text: mouth [UBERON:0000165]

text: mouth mucosa [UBERON:0003729]

text: Belgium

characteristic: host age

text: Epithelium of mucosa of mouth

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

text: initial denaturation:96degC_2min; annealing:96degC_15s; elongation: 50degC_50s; final elongation:70degC_90s

characteristic: pcr conditions

text: FWD:NNNNNNNNNTCCTACGGGNGGCWGCAG; REV:NNNNNNNNNNTGACTACHVGGGTATCTAAKCC

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2417:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Buccal T10

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: mouth mucosa [UBERON:0003729]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Epithelium of mucosa of mouth

characteristic: host body site

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2418:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Buccal T12

text: mouth [UBERON:0000165]

text: mouth mucosa [UBERON:0003729]

text: Belgium

characteristic: host age

text: Epithelium of mucosa of mouth

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 2419:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

characteristic: Submitter Id

text: GFBIO

characteristic: broker name

text: Uchime

characteristic: chimera check

characteristic: collection date

text: Patient_1 Buccal T14

characteristic: description

characteristic: environment (biome)

text: mouth [UBERON:0000165]

characteristic: environment (feature)

text: mouth mucosa [UBERON:0003729]

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Epithelium of mucosa of mouth

characteristic: host body site

text: Burkitt lymphoma

text: male

text: human-oral

text: mimarks-survey

text: PMID 22515215

text: human oral metagenome

text: human oral metagenome

text: Illumina sequencing

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFBIO

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: 2420:c9df40ed-d1b8-46cc-abd4-bfd18db285b0

text: GFBIO

text: Uchime

text: Patient_1 Buccal T16

text: mouth [UBERON:0000165]

text: mouth mucosa [UBERON:0003729]

text: Belgium

characteristic: host age

text: Epithelium of mucosa of mouth

text: Burkitt lymphoma

characteristic: host disease status

text: male

characteristic: host sex

characteristic: host subject id

text: human-oral

characteristic: human oral environmental package

text: mimarks-survey

characteristic: investigation type

text: PMID 22515215

characteristic: nucleic acid extraction

text: human oral metagenome

characteristic: organism

characteristic: pcr conditions

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

text: human oral metagenome

text: Illumina sequencing

characteristic: sequencing method

text: 16S rRNA

characteristic: target gene

characteristic: target subfragment