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text: Protocols: Whole blood was collected into PAXgene tubes (Qiagen, Valencia, CA). All evaluations and sampling were undertaken at the Clinical Investigation Centre, Institut Imagine, Hôpital Necker, Paris, France, with visits at Day 0 (D0), and then at 1 (M1), 3 (M3), 6 (M6), 9 (M9), 12 (M12) and 18 (M18) months thereafter. Treatment was initiated on D0 and stopped at M12. Routine bloods, vital signs, weight and height measurements were recorded at every visit. The study was registered with ClinicalTrials.gov (NCT02363452), sponsored by Assistance Publique - Hôpitaux de Paris (AP-HP: P140203 / EUDRACT 2014-002710-23) and the protocol approved by the Agence Nationale de Sécurité du médicament et des produits de santé (AGSENR 141009A-31) and the Comité de Protection des Personnes (ref: 2014-07-21). The study was financed by the European Leukodystrophy Association (ELA 2012-008l1), and medications provided by GlaxoSmithKline (MED 14006-HAO14008-NoVAL 2015/2014-115/02). All families gave written informed consent. In this pilot study involving patients with Aicardi-Goutières syndrome (AGS) due to mutations in TREX1, RNASEH2A, RNASEH2B or SAMHD1 three nucleoside analogue reverse transcriptase inhibitors (RTIs) were administered over 12 months. Patients were treated with triple therapy comprising abacavir (ABC), lamivudine (3TC) and zidovudine (AZT) according to a dosing protocol used in children infected with HIV-1 (https://aidsinfo.nih.gov/contentfiles/lvguidelines/pediatricguidelines.pdf). HLA B57-01 status was determined before exposure to abacavir. Medication in syrup or tablet form was administered orally or by gastrostomy tube. Data on adverse events were collected in accordance with Article R1123-39 of the French Public Health Code and European Medicines Agency guidelines on good pharmacovigilance practice. Compliance was estimated from the count of bottles returned, mean corpuscular volume and a comparison of recorded drug concentrations with those observed in HIV-1 infected children (PMID: 25279808). Treatment was initiated on D0 and stopped at M12. All evaluations and sampling were undertaken at the Clinical Investigation Centre, Institut Imagine, Hôpital Necker, Paris, France, with visits at Day 0 (D0), and then at 1 (M1), 3 (M3), 6 (M6), 9 (M9), 12 (M12) and 18 (M18) months thereafter. RNA-seq was performed with samples taken at D0, M12 and M18. Total RNA extracted using a PreAnalytix RNA isolation kit. RNA integrity was analysed on an Agilent 2100 Bioanalyzer. Truseq stranded mRNA Assay. Paired end.

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text: juvenile

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 25


E-MTAB-7087:Sample 26

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7087:Sample 26

characteristic: Submitter Id

text: ArrayExpress

text: human

text: juvenile

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 26


E-MTAB-7087:Sample 27

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 27

text: ArrayExpress

text: human

characteristic: common name

text: juvenile

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 27

characteristic: title


E-MTAB-7087:Sample 28

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 28

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: juvenile

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 28


E-MTAB-7087:Sample 9

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 9

text: ArrayExpress

text: human

text: juvenile

characteristic: developmental stage

text: Aicardi-Goutieres syndrome

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 9


E-MTAB-7087:Sample 10

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 10

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 10


E-MTAB-7087:Sample 11

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7087:Sample 11

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 11


E-MTAB-7087:Sample 19

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7087:Sample 19

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 19


E-MTAB-7087:Sample 18

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 18

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 18


E-MTAB-7087:Sample 20

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 20

text: ArrayExpress

characteristic: broker name

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 20

characteristic: title


E-MTAB-7087:Sample 16

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 16

text: ArrayExpress

text: human

characteristic: description

text: juvenile

characteristic: developmental stage

text: Aicardi-Goutieres syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 16


E-MTAB-7087:Sample 15

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 15

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 15


E-MTAB-7087:Sample 17

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-7087:Sample 17

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 17


E-MTAB-7087:Sample 13

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7087:Sample 13

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 13


E-MTAB-7087:Sample 12

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: SRA accession

text: E-MTAB-7087:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 12


E-MTAB-7087:Sample 14

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 14

text: ArrayExpress

characteristic: broker name

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 14


E-MTAB-7087:Sample 3

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 3

text: ArrayExpress

text: human

characteristic: description

text: juvenile

characteristic: developmental stage

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 3

characteristic: title


E-MTAB-7087:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 2

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 2


E-MTAB-7087:Sample 1

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-7087:Sample 1

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 1


E-MTAB-7087:Sample 22

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7087:Sample 22

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 22


E-MTAB-7087:Sample 21

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7087:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 21


E-MTAB-7087:Sample 23

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 23

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 23


E-MTAB-7087:Sample 4

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 4

text: ArrayExpress

text: human

characteristic: description

text: juvenile

characteristic: developmental stage

text: Aicardi-Goutieres syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 4


E-MTAB-7087:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7087:Sample 6

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-7087:Sample 5

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-7087:Sample 5

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 5


E-MTAB-7087:Sample 7

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7087:Sample 7

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 7


E-MTAB-7087:Sample 8

text: UNIVERSITY OF MANCHESTER

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7087:Sample 8

text: ArrayExpress

text: human

text: juvenile

text: Aicardi-Goutieres syndrome

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 8


characteristic: ENA-CHECKLIST

text: Biochemical Adaptation Laboratory

text: public

characteristic: Submitter Id

text: zebrafish

text: Control forebrain RNA-seq in zebrafish

text: adult

characteristic: dev stage

text: Danio rerio

text: Danio rerio

text: brain

characteristic: tissue type

text: Forebrain control


E-MTAB-7089:Sample 1

text: UZH

text: public

text: E-MTAB-7089:Sample 1

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: fibroblast

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Exponentially growing HAP1 cells in monolayer were harvested by trypsinization and then centrifugation. Cell pellets were washed twice in phosphate buffered saline (PBS) and then stored at -80 degrees Celsius until required for nucleic acid extraction. Nucleic acid was extracted from cell pellets using Trizol (Invitrogen), and the total RNA fraction was retained and purified according to manufacturerâ€™s instructions. polyA+ RNA was purified from total RNA samples, and a PCR-amplified library was prepared using the Illumina TruSeq RNA stranded library preparation kit.

characteristic: description

text: chronic myelogenous leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: Sample 1


E-MTAB-7089:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UZH

characteristic: INSDC center name

text: public

text: E-MTAB-7089:Sample 2

text: ArrayExpress

text: human

text: Protocols: 5ug of PolyA+ RNA isolated from the cerebral cortex of post mortem human brain tissue was purchased from Clontech (catalog id 636164). The tissue was pooled from 2 caucasian males, ages: 27 & 78. The cause of death was trauma. RNA was isolated by a modified guanidinium thiocyanate method (Ausubel FM, et al. (1994) Current Protocols in Molecular Biology. (John Wiley & Sons, NY), Section 4) polyA+ RNA selection was performed with two rounds of oligo(dT)-cellulose columns (Sambrook J, et al. (1989) Molecular Cloning: A laboratory Manual, Second Edition (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY), pp. 6.22-6.34) as per manufacturer's instructions, and the sequencing library was prepared using the Illumina TruSeq RNA stranded library preparation kit.

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: cerebral cortex

text: Homo sapiens

text: male

characteristic: sex

text: Sample 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of Genomics and Bioinformatics Institute of Molecular Genetics of the ASCR

characteristic: Submitter Id

text: 4 to 6

unit: week

characteristic: age

text: ArrayExpress

text: group 3 innate lymphoid cell

text: house mouse

text: Protocols: Peripheral lymph nodes (LN) were minced and digested at 37 degrees C in RPMI (PAA) containing 0.25 mg/ml Collagenase D (Roche), 1 U/ml Dispase I (Roche), 25 mM Hepes, pH 7.2, and 120 U/ml DNase I (Roche) for 40 min, followed by addition of 5 mM EDTA and incubation for 5 min. LNs were digested with 0.5U/ml Liberase TM (Roche) and DNase I. Aire-ILC3s were sorted as Lin-, MHCII+, CD80+, IL7Ra+ cells on INFLUX sorter (BD). Total mRNA was extracted from the FACS-sorted cells using RNeasy Plus Microkit (Qiagen). The quality of the isolated RNA was controlled by Bioanalyzer 2100 electrophoresis (Agilent). RNA-seq libraries were prepared by EMBL Gene core facility in Heidelberg.

text: Aire -/-

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lymph node

characteristic: organism part

text: Lin-, MHCII+, CD80+, IL7Ra+

characteristic: phenotype

text: Mus musculus

text: female

text: BALB/c

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics Institute of Molecular Genetics of the ASCR

text: public

text: 4 to 6

text: ArrayExpress

characteristic: broker name

text: group 3 innate lymphoid cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: Aire -/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lymph node

text: Lin-, MHCII+, CD80+, IL7Ra+

text: Mus musculus

text: female

text: BALB/c


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 4 to 6

text: ArrayExpress

text: group 3 innate lymphoid cell

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lymph node

text: Lin-, MHCII+, CD80+, IL7Ra+

text: Mus musculus

text: female

characteristic: sex

text: BALB/c

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bacillus pumilus

text: Bacillus pumilus


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

text: public

tag: Namespace:ISTITUTO SUPERIORE DI SANITA

text: National Cryptosporidium Reference Unit, Swansea, SA2 8QA, UK

characteristic: collecting institution

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Family cluster

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Colchester

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Ashford

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Carlisle

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Walsall

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Cambridge

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Frimley

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Middlesbrough

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Gateshead

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Rhyl

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Wakefield

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Oldham

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Chichester

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Lancaster

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Swansea

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Derby

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Bristol

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium hominis

text: Cryptosporidium hominis


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: no data

text: United Kingdom

text: Maidstone

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium hominis

characteristic: organism

text: Cryptosporidium hominis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Outbreak 1

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not available

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rachel Chalmers

text: Outbreak 4

text: oocyst

text: microscopy

text: United Kingdom

text: not available

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Outbreak 6

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: not available

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Outbreak 2

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: not available

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

text: Rachel Chalmers

text: Outbreak 3

text: oocyst

text: microscopy

text: United Kingdom

text: not available

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Outbreak 5

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: not available

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Carmarthen

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Maidstone

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Manchester

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Ipswich

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Worcester

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: not available

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: not available

text: Calf

text: Bos taurus

text: feces

text: parasite

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Rhyl

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Swansea

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Preston

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: collection date

text: Rachel Chalmers

characteristic: collector name

text: Sporadic case

text: oocyst

characteristic: dev stage

text: microscopy

characteristic: diagnostic method

characteristic: genotype

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Gateshead

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC center name

text: public

text: Rachel Chalmers

text: Sporadic case

text: oocyst

text: microscopy

text: United Kingdom

text: Leicester

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: feces

characteristic: isolation source host associated

text: parasite

characteristic: known pathogenicity

text: Cryptosporidium parvum

text: Cryptosporidium parvum


characteristic: ENA-FIRST-PUBLIC

text: ISTITUTO SUPERIORE DI SANITA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

text: Rachel Chalmers

text: Sporadic case in HIV patient

characteristic: description

text: oocyst

text: microscopy

text: United Kingdom

text: Nottingham

text: Human

text: Homo sapiens

text: feces

text: parasite

text: Cryptosporidium parvum

characteristic: organism

text: Cryptosporidium parvum

characteristic: title


E-MTAB-7080:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-7080:Sample 10

text: ArrayExpress

characteristic: broker name

characteristic: cohort

text: human

characteristic: common name

text: Protocols: We have undertaken Lupus Extended Phenotype (LEAP) study in of a cohort of adult patients with connective tissue diseases (CTDs), namely systemic lupus erythematosus, Sjogren's syndrome, mixed and undifferentiated CTD, limited and diffuse cutaneous systemic sclerosis and dermatomyositis. RNAseq was undertaken in 12 participants from 4 ‘cohorts’ based on interferon stimulated gene (ISG) and autoantibodies analyses: 3 ISG positive and anti-Smith positive participants; 3 ISG positive and anti-Smith negative participants; 3 ISG negative and anti-Smith positive participants and 3 ISG negative and anti-Smith negative participants. ISG measurements: Blood was collected into PAXgene tubes (PreAnalytix) and, after being kept at room temperature for between 2 and 72 hours, was frozen at -20oC, then stored at -80oC until extraction. Total RNA was extracted from whole blood using a PAXgene (PreAnalytix) RNA isolation kit. RNA concentration was assessed by Qubit 2.0 fluorometer (Thermo Fisher Scientific). After DNAse treatment, RNA was converted into cDNA with the High Capacity cDNA reverse transcriptase kit (Qiagen). Quantitative reverse transcription polymerase chain reaction (qPCR) analysis was performed using the TaqMan Universal PCR Master Mix (Applied Biosystems), and cDNA derived from 40ng total RNA. Using TaqMan probes for IFI27 (Hs01086370_m1), IFI44L (Hs00199115_m1), IFIT1 (Hs00356631_g1), ISG15 (Hs00192713_m1), RSAD2 (Hs01057264_m1), and SIGLEC1 (Hs00988063_m1), the relative abundance of each target transcript was normalised to the expression level of HPRT1 (Hs03929096_g1) and 18S (Hs999999001_s1), and assessed with the Applied Biosystems StepOne Software v2.1 and Data Assist Software v.3.01. For each of the six probes, individual (patient and control) data were expressed relative to a single calibrator. The median fold change of the six ISGs, when compared to the median of the combined data of 29 healthy controls (16 female and 13 male) with a median age of 24 years (range 1-58 years), was used to create an interferon score for each patient as previously described (PMID: 24183309). RQ is equal to 2e-ddCt i.e. the normalized fold change relative to a control. The mean interferon score of the healthy controls plus two standard deviations above the mean (+ 2 SD) was calculated. Scores above this value (> 2•466) were designated as positive. Autoantibodies were measured in serum using the BioPlex 2200 ANA Screen with MDSS panel (according to the manufacturer’s instructions). Total RNA was extracted from whole blood using a PAXgene (PreAnalytix) RNA isolation kit. RNA integrity was analyzed with Agilent 2100 Bioanalyzer. Truseq stranded mRNA Assay. Paired end.

text: adult

characteristic: developmental stage

text: connective tissue disease

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 10


E-MTAB-7080:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7080:Sample 11

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 11


E-MTAB-7080:Sample 12

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7080:Sample 12

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: adult

text: connective tissue disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 12

characteristic: title


E-MTAB-7080:Sample 7

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-7080:Sample 7

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 7


E-MTAB-7080:Sample 8

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7080:Sample 8

text: ArrayExpress

characteristic: broker name

characteristic: cohort

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 8


E-MTAB-7080:Sample 9

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7080:Sample 9

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 9


E-MTAB-7080:Sample 1

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7080:Sample 1

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 1


E-MTAB-7080:Sample 2

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7080:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: adult

text: connective tissue disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-7080:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

text: public

text: E-MTAB-7080:Sample 3

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 3


E-MTAB-7080:Sample 4

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7080:Sample 4

text: ArrayExpress

characteristic: broker name

characteristic: cohort

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 4


E-MTAB-7080:Sample 5

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-7080:Sample 5

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Sample 5


E-MTAB-7080:Sample 6

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7080:Sample 6

text: ArrayExpress

text: human

text: adult

text: connective tissue disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Sample 6


text: UNIVERSITY OF EXETER

text: public

tag: Namespace:UNIVERSITY OF EXETER

characteristic: Submitter Id

text: Indianmeal moth

text: pupae

characteristic: dev stage

text: Plodia interpunctella

characteristic: organism

text: Plodia interpunctella

text: Re-sequenced Plodia interpunctella lines

characteristic: title


E-MTAB-7086:EYFP Hi rep1

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF MELBOURNE

characteristic: INSDC center name

text: public

text: E-MTAB-7086:EYFP Hi rep1

tag: Namespace:THE UNIVERSITY OF MELBOURNE

text: ArrayExpress

text: neuroblast

characteristic: cell type

text: house mouse

text: Protocols: E12.5 TH-IRES-Cre;ROSA26-EYFP mouse embryos were generated by mating heterozygous TH-IRES-Cre mice with homozygous ROSA26-EYFP mice. The urogenital ridges were dissected by inserting the tips of fine forceps underneath, and pulled away by holding the dorsal aorta. The tissues were then dissociated and sorted by BD FACSAria Fusion cell sorter with a 100 µm nozzle at 20 psi. Live EYFP+ single cells were first isolated on the basis of 7-AAD (excitation: 488 nm, emission 692/40 nm) and then sorted into EYFP Hi and Lo. Total RNA from isolated EYFP+HI and EYFP+LO cells were extracted using by TRIzol/chloroform extraction followed by RNeasy Micro Kit (Qiagen). RNA pellets with ~20,000 cells from more than 10 embryos with a sex ratio within a range of 1:1.3 (male:female or female:male) were pooled and quantified that RIN> 8, average RIN = 9.7 cDNA library was prepared by random priming using the SMART-seq v4 Ultra Low Input RNA Kit (Clontech, Cat. 634889) followed by PCR amplification with the addition of Illumina adaptors for multiplexing experiment using Nextera XT Kit (Illumina, Cat. FC-131-1096)

characteristic: description

text: embryonic day 12.5

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: gonadal ridge

text: Mus musculus

characteristic: strain

text: EYFP Hi rep1


E-MTAB-7086:EYFP Hi rep2

characteristic: ENA-FIRST-PUBLIC

text: THE UNIVERSITY OF MELBOURNE

text: public

text: E-MTAB-7086:EYFP Hi rep2

text: ArrayExpress

characteristic: broker name

text: neuroblast

text: house mouse

characteristic: common name

text: embryonic day 12.5

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: gonadal ridge

characteristic: organism part

text: Mus musculus

text: EYFP Hi rep2


E-MTAB-7086:EYFP Hi rep3

text: THE UNIVERSITY OF MELBOURNE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7086:EYFP Hi rep3

characteristic: Submitter Id

text: ArrayExpress

text: neuroblast

text: house mouse

text: embryonic day 12.5

text: Mus musculus

text: Mus musculus

text: gonadal ridge

text: Mus musculus

text: EYFP Hi rep3


E-MTAB-7086:EYFP Hi rep4

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: THE UNIVERSITY OF MELBOURNE

text: public

text: E-MTAB-7086:EYFP Hi rep4

text: ArrayExpress

text: neuroblast

text: house mouse

text: embryonic day 12.5

text: Mus musculus

characteristic: organism

text: Mus musculus

text: gonadal ridge

text: Mus musculus

text: EYFP Hi rep4

characteristic: title


E-MTAB-7086:EYFP Lo rep1

characteristic: External Id

text: THE UNIVERSITY OF MELBOURNE

characteristic: INSDC center name

text: public

text: E-MTAB-7086:EYFP Lo rep1

text: ArrayExpress

text: chromaffin celll

characteristic: cell type

text: house mouse

characteristic: description

text: embryonic day 12.5

text: Mus musculus

text: Mus musculus

text: gonadal ridge

text: Mus musculus

text: EYFP Lo rep1


E-MTAB-7086:EYFP Lo rep2

characteristic: ENA-FIRST-PUBLIC

text: THE UNIVERSITY OF MELBOURNE

text: public

text: E-MTAB-7086:EYFP Lo rep2

text: ArrayExpress

characteristic: broker name

text: chromaffin celll

text: house mouse

text: embryonic day 12.5

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: gonadal ridge

text: Mus musculus

characteristic: strain

text: EYFP Lo rep2


E-MTAB-7086:EYFP Lo rep3

text: THE UNIVERSITY OF MELBOURNE

characteristic: INSDC first public

text: public

text: E-MTAB-7086:EYFP Lo rep3

text: ArrayExpress

text: chromaffin celll

text: house mouse

characteristic: common name

text: embryonic day 12.5

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: gonadal ridge

characteristic: organism part

text: Mus musculus

text: EYFP Lo rep3


E-MTAB-7086:EYFP Lo rep4

text: THE UNIVERSITY OF MELBOURNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7086:EYFP Lo rep4

characteristic: Submitter Id

text: ArrayExpress

text: chromaffin celll

text: house mouse

text: embryonic day 12.5

text: Mus musculus

text: Mus musculus

text: gonadal ridge

text: Mus musculus

text: EYFP Lo rep4


Gifu

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: AARHUS UNIVERSITY

text: public

text: Gifu

tag: Namespace:AARHUS UNIVERSITY

text: Gifu

text: Lotus japonicus

characteristic: organism

text: Lotus japonicus

text: Gifu

characteristic: title


characteristic: External Id

text: AARHUS UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: description

text: Lotus japonicus

text: Lotus japonicus


characteristic: ENA-FIRST-PUBLIC

text: UMR 5569

text: public

tag: Namespace:UMR 5569

characteristic: collection date

text: Acid mine drainage

characteristic: environment (biome)

text: Field-scale pilot

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: metagenome

text: Dynamics of bacterial communities mediating the treatment of an as-rich acid mine drainage in a field-scale pilot

characteristic: project name

text: metagenome

text: Illumina sequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UMR 5569

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Acid mine drainage

text: Field-scale pilot

text: Bioprecipitate

text: France

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Illumina sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: UMR 5569

characteristic: INSDC center name

text: public

characteristic: collection date

text: Acid mine drainage

characteristic: environment (biome)

text: Creek

characteristic: environment (feature)

text: Bioprecipitate

text: France

text: metagenome

text: metagenome

text: metagenome

text: Illumina sequencing

characteristic: title


text: TIANJIN UNIVERSITY, TIANJIN, CHINA

text: public

tag: Namespace:TIANJIN UNIVERSITY, TIANJIN, CHINA

text: wetland

text: river

text: sediment

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: sediment bacterium 15-27

text: Increased Biodegradation Scope and Efficiency of Polycyclic Aromatic Hydrocarbons in a Sediment Microbial Electrochemical System

characteristic: project name

text: sediment bacterium 15-27

text: sediment

characteristic: sediment environmental package

text: High-throughput sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF TORONTO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF TORONTO

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

characteristic: organism

text: Homo sapiens


fecal samples36

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC center name

text: public

text: fecal samples36

tag: Namespace:UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA

text: house mouse

text: Mus musculus

text: Mus musculus

text: viral metagenomics

characteristic: title


fecal samples38

text: UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA

text: public

text: fecal samples38

text: house mouse

text: Mus musculus

text: Mus musculus

text: viral metagenomics


fecal samples37

text: public

text: fecal samples37

text: house mouse

text: Mus musculus

text: Mus musculus

text: viral metagenomics


text: UNIVERSITY HOSPITAL TUEBINGEN

text: public

tag: Namespace:UNIVERSITY HOSPITAL TUEBINGEN

characteristic: collection date

text: Klebsiella pneumoniae

text: clinical isolate

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: human

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Clinical Klebsiella isolate


characteristic: ENA-CHECKLIST

text: UNIVERSITY HOSPITAL TUEBINGEN

text: public

text: Klebsiella variicola

text: clinical isolate

text: Germany

text: human

text: Klebsiella variicola

text: Klebsiella variicola

text: Clinical Klebsiella isolate


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY HOSPITAL TUEBINGEN

text: public

text: Klebsiella quasipneumoniae

text: clinical isolate

text: Germany

text: human

text: Klebsiella quasipneumoniae

text: Klebsiella quasipneumoniae

text: Clinical Klebsiella isolate


text: UNIVERSITY OF BONN, GERMANY

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF BONN, GERMANY

text: house mouse

text: Mus musculus

text: Mus musculus


text: THE UNIVERSITY OF WESTERN AUSTRALIA

characteristic: INSDC last update

text: public

tag: Namespace:THE UNIVERSITY OF WESTERN AUSTRALIA

text: Agriculture

characteristic: current land use

text: Wheat

characteristic: current vegetation

text: Bulk soil

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: pcr primers

text: Hydrogel microbiome

characteristic: project name

text: soil metagenome

text: pyosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Regosol

characteristic: soil type

characteristic: target subfragment

text: HG-microbe 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WESTERN AUSTRALIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Agriculture

characteristic: current land use

text: Wheat

text: Bulk soil

characteristic: description

text: soil

text: agricultural soil

text: soil

text: PAAL-SAP

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

characteristic: organism

text: Hydrogel microbiome

text: soil metagenome

text: pyosequencing

text: soil

text: Regosol

text: HG-microbe 16S rRNA

characteristic: title


text: THE UNIVERSITY OF WESTERN AUSTRALIA

text: public

text: Agriculture

text: Wheat

characteristic: current vegetation

text: Rhizosphere soil

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: pcr primers

text: Hydrogel microbiome

characteristic: project name

text: soil metagenome

text: pyosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Regosol

characteristic: soil type

characteristic: target subfragment

text: HG-microbe 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WESTERN AUSTRALIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Agriculture

characteristic: current land use

text: Wheat

text: Rhizosphere soil

characteristic: description

text: soil

text: agricultural soil

text: soil

text: PAAL-SAP

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

characteristic: organism

text: Hydrogel microbiome

text: soil metagenome

text: pyosequencing

text: soil

text: Regosol

text: HG-microbe 16S rRNA

characteristic: title


text: THE UNIVERSITY OF WESTERN AUSTRALIA

text: public

text: Agriculture

text: Wheat

characteristic: current vegetation

text: PAAL-SAP

text: environmental material

characteristic: environment (biome)

text: anthropogenic environmental material

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: PAAL-SAP

characteristic: experimental factor

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: pcr primers

text: Hydrogel microbiome

characteristic: project name

text: metagenome

text: pyosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Regosol

characteristic: soil type

characteristic: target subfragment

text: HG-microbe 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WESTERN AUSTRALIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Agriculture

characteristic: current land use

text: Wheat

text: PAAL-SAP

characteristic: description

text: environmental material

text: anthropogenic environmental material

text: organic material

text: PAAL-SAP

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

characteristic: organism

text: Hydrogel microbiome

text: metagenome

text: pyosequencing

text: soil

text: Luvisol

text: HG-microbe 16S rRNA

characteristic: title


text: THE UNIVERSITY OF WESTERN AUSTRALIA

text: public

text: Agriculture

text: Wheat

characteristic: current vegetation

text: Bulk soil

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Control

characteristic: experimental factor

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: soil metagenome

characteristic: pcr primers

text: Hydrogel microbiome

characteristic: project name

text: soil metagenome

text: pyosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Luvisol

characteristic: soil type

characteristic: target subfragment

text: HG-microbe 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF WESTERN AUSTRALIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Agriculture

characteristic: current land use

text: Wheat

text: Bulk soil

characteristic: description

text: soil

text: agricultural soil

text: soil

text: PAAL-SAP

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: soil metagenome

characteristic: organism

text: Hydrogel microbiome

text: soil metagenome

text: pyosequencing

text: soil

text: Luvisol

text: HG-microbe 16S rRNA

characteristic: title


text: TURKU CENTRE FOR BIOTECHNOLOGY, FINLAND

text: public

tag: Namespace:TURKU CENTRE FOR BIOTECHNOLOGY, FINLAND

text: Faecal sample

characteristic: bio material

text: human gut metagenome

characteristic: common name

text: Human Gut

characteristic: environment (biome)

text: Human

characteristic: environment (feature)

text: Fecal

characteristic: environment (material)

text: Finland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Faecal sample

characteristic: isolation source

text: human gut metagenome

text: Endurance

characteristic: project name

text: human gut metagenome

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: URMITE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: sputum

text: Actinomyces culturomici

text: Actinomyces culturomici

characteristic: strain

text: Actinomyces culturomici genome


E-MTAB-6385:Sample 1

text: public

text: E-MTAB-6385:Sample 1

tag: Namespace:Karolinska Institutet, Department of Cell and Molecular Biology

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Primary fibroblasts were derived from adult CAST/EiJ x C57/Bl6 mice. Tail explants were cultured in fibroblast medium (DMEM high glucose, 10% ES cell FBS, 1% Penicillin/Streptomycin, 1% non-essential amino acids, 1% sodium-puryvate, 0.1mM b-Mercaptoethanol). Cells were passaged twice before distributed as individual cells into wells of 384 or 96 well plates using a FACS. Wells was pre-loaded with lysis buffer. Cell lysis Smart-seq2, indexed by Nextera i5 and i7, and without exogenous spike-ins.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 1

characteristic: title


E-MTAB-6385:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Karolinska Institutet, Department of Cell and Molecular Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-6385:Sample 2

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 2


E-MTAB-6385:Sample 3

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 3

characteristic: Submitter Id

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

characteristic: strain

text: Sample 3


E-MTAB-6385:Sample 4

text: public

text: E-MTAB-6385:Sample 4

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 4


E-MTAB-6385:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 5

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 5

characteristic: title


E-MTAB-6385:Sample 6

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 6

characteristic: Submitter Id

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 6


E-MTAB-6385:Sample 7

text: public

text: E-MTAB-6385:Sample 7

text: 8 to 14

text: ArrayExpress

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

characteristic: strain

text: Sample 7


E-MTAB-6385:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 8

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 8


E-MTAB-6385:Sample 9

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 9

characteristic: Submitter Id

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 9

characteristic: title


E-MTAB-6385:Sample 10

text: public

text: E-MTAB-6385:Sample 10

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 10


E-MTAB-6385:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 11

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

characteristic: strain

text: Sample 11


E-MTAB-6385:Sample 12

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 12

characteristic: Submitter Id

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 12


E-MTAB-6385:Sample 13

text: public

text: E-MTAB-6385:Sample 13

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 13

characteristic: title


E-MTAB-6385:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 14

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 14


E-MTAB-6385:Sample 15

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 15

characteristic: Submitter Id

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

characteristic: strain

text: Sample 15


E-MTAB-6385:Sample 16

text: public

text: E-MTAB-6385:Sample 16

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 16


E-MTAB-6385:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 17

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 17

characteristic: title


E-MTAB-6385:Sample 18

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 18

characteristic: Submitter Id

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 18


E-MTAB-6385:Sample 19

text: public

text: E-MTAB-6385:Sample 19

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

characteristic: strain

text: Sample 19


E-MTAB-6385:Sample 20

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 20

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 20


E-MTAB-6385:Sample 21

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 21

characteristic: Submitter Id

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 21

characteristic: title


E-MTAB-6385:Sample 22

text: public

text: E-MTAB-6385:Sample 22

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 22


E-MTAB-6385:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 23

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

characteristic: strain

text: Sample 23


E-MTAB-6385:Sample 24

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6385:Sample 24

characteristic: Submitter Id

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

characteristic: organism part

text: tail

characteristic: sampling site

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 24


E-MTAB-6385:Sample 25

text: public

text: E-MTAB-6385:Sample 25

text: 8 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: fibroblast

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

characteristic: sex

text: C57BL/6 x CAST/EiJ

text: Sample 25

characteristic: title


E-MTAB-6385:Sample 26

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-6385:Sample 26

text: 8 to 14

text: ArrayExpress

text: fibroblast

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: dermis

text: tail

text: Mus musculus

text: female

text: C57BL/6 x CAST/EiJ

text: Sample 26