E-MTAB-7097:Sample 1

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-7097:Sample 1

text: ArrayExpress

text: reticular cell

text: house mouse

text: embryonic day 19.5

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-7097:Sample 2

status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7097:Sample 2

tag: Namespace:Institute of Immunobiology, Kantonsspital St. Gallen

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: reticular cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: EYFP+ cells from Ccl19-iEYFP fetal spleens (mean yield = 1150 cells, n = 5), adult Ccl19-iEYFP (mean yield = 4100 cells, n = 7) and Ccl19-iEYFP Ltbrfl/fl (mean yield = 3500 cells, n = 9) spleens were sorted with a Bio-Rad S3 cell sorter and were collected in 200 µl Eppendorf tubes containing 100 μl of RNAlater reagent (Qiagen) to preserve the RNA after sorting. Likewise, reticular cell populations were sorted based on the defined markers sets, i.e. PDPN+ TRCs (mean yield = 670 cells, n = 4), CD35+ FDCs (mean yield = 950 cells, n = 3), MAdCAM-1+ MRCs (mean yield = 1010 cells, n = 2), Sca-1+ PRCs (mean yield = 1525 cells, n = 3). RNA extraction was performed using Quick-RNA Mini-Prep (Zymo Research). Reverse transcription and cDNA library generation was done using the Ovation SoLo RNA-Seq System (NuGEN) as described by the manufacturer. cDNA libraries were quantified by KAPA library Quantification kit (KAPA Biosystems) and Agilent Tape station in the Functional Genomics Center Zurich, Zurich, Switzerland.

characteristic: description

text: embryonic day 19.5

characteristic: developmental stage

text: Mus musculus

characteristic: organism

text: Mus musculus

text: white pulp of spleen

text: Mus musculus

text: mixed

text: Sample 2

characteristic: title


E-MTAB-7097:Sample 3

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Institute of Immunobiology, Kantonsspital St. Gallen

text: public

text: E-MTAB-7097:Sample 3

text: ArrayExpress

text: reticular cell

text: house mouse

text: embryonic day 19.5

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

text: Sample 3


E-MTAB-7097:Sample 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7097:Sample 4

text: ArrayExpress

text: reticular cell

text: house mouse

text: embryonic day 19.5

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

text: Mus musculus

text: mixed

characteristic: strain

text: Sample 4


E-MTAB-7097:Sample 5

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7097:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: reticular cell

text: house mouse

text: embryonic day 19.5

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

text: Mus musculus

text: mixed

text: Sample 5


text: KU LEUVEN

text: public

tag: Namespace:KU LEUVEN

characteristic: collection date

text: Aquatic biome

characteristic: environment (biome)

text: Anaerobic

characteristic: environment (feature)

text: Sludge

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: wastewater metagenome

characteristic: organism

characteristic: project name

text: wastewater metagenome

text: Illumina Miseq

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDIBAPS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: DNA extracted from BLL-11q tumor cases from FFPE tissue.

characteristic: title


text: IDIBAPS

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Homo sapiens

text: Homo sapiens

text: DNA extracted from BLL-11q tumor cases from frozen tissue.


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

tag: Namespace:NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: Herpes simplex virus type 1

text: native RNA sequencing data from NHDFs infected with HSV-1 strain Patton (Us11-GFP) for 18 hrs - biological replicate #1

characteristic: description

text: Human alphaherpesvirus 1

characteristic: organism

text: Human alphaherpesvirus 1

text: Nanopore FAST5 data


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Herpes simplex virus type 1

text: native RNA sequencing data from NHDFs infected with HSV-1 strain Patton (Us11-GFP) for 18 hrs - biological replicate #2

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: Nanopore FAST5 data


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Herpes simplex virus type 1

text: native RNA sequencing data from NHDFs infected with HSV-1 strain F (dVHS) for 6 hrs - biological replicate #1

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: Nanopore FAST5 data


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Herpes simplex virus type 1

text: native RNA sequencing data from NHDFs infected with HSV-1 strain Patton (Us11-GFP) for 6 hrs - biological replicate #1

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: Nanopore FAST5 data


text: public

tag: Namespace:Biosystems and Integrative Sciences Institute

text: unidentified

text: unidentified

text: assobio 20 cm


text: JOHN INNES CENTRE, NORWICH, UK.

text: public

tag: Namespace:JOHN INNES CENTRE, NORWICH, UK.

text: thale cress

text: Arabisopsis accession DJA-1 FLOWCELL 1

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabisopsis accession DJA-1 FLOWCELL 1


characteristic: ENA-CHECKLIST

text: JOHN INNES CENTRE, NORWICH, UK.

text: public

text: thale cress

text: Arabisopsis accession DJA-1 FLOWCELL 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabisopsis accession DJA-1 FLOWCELL 2


characteristic: ENA-FIRST-PUBLIC

text: JOHN INNES CENTRE, NORWICH, UK.

text: public

text: thale cress

text: Arabisopsis accession TBA-01

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabisopsis accession TBA-01


characteristic: ENA-LAST-UPDATE

text: JOHN INNES CENTRE, NORWICH, UK.

text: public

text: thale cress

text: Arabisopsis accession TI-070 FLOWCELL 1

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabisopsis accession TI-070 FLOWCELL 1


characteristic: External Id

text: JOHN INNES CENTRE, NORWICH, UK.

text: public

text: thale cress

text: Arabisopsis accession TI-070 FLOWCELL 2

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: Arabisopsis accession TI-070 FLOWCELL 2


text: IHAP

characteristic: INSDC center name

text: public

text: Mycoplasma agalactiae

text: 5632G3xPG2E10 transconjugant

text: Mycoplasma agalactiae

text: Mycoplasma agalactiae

characteristic: strain


text: IHAP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Mycoplasma agalactiae

text: 5632G3xPG2E10 transconjugant passages

text: Mycoplasma agalactiae

text: Mycoplasma agalactiae


text: IHAP

text: public

text: Mycoplasma agalactiae

characteristic: common name

text: parental 5632 gentamicin resistant clone

text: Mycoplasma agalactiae

text: Mycoplasma agalactiae

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Environment Centre Wales (Bangor University)

characteristic: collection date

text: GMEP ITS sample collected with co-located with 18S, 16S, and soil data

text: temperate grassland biome

characteristic: environment (biome)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

text: The Glastir Monitoring & Evaluation Programme - sequencing data from microbiology cores of years 1 and 2 (2013-2014) using the 16S marker gene.

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Environment Centre Wales (Bangor University)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: description

text: temperate grassland biome

text: Soil

text: United Kingdom

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina MiSeq

text: soil


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: forest biome

characteristic: environment (biome)

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: soil metagenome

text: soil metagenome

text: Illumina MiSeq

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: temperate shrubland biome

text: Soil

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: soil metagenome

characteristic: project name

text: soil metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: cropland biome

text: Soil

text: United Kingdom

text: mimarks-survey

text: soil metagenome

characteristic: organism

text: soil metagenome

text: Illumina MiSeq

text: soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: Soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: mimarks-survey

text: soil metagenome

text: soil metagenome

text: Illumina MiSeq

text: soil

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NYU

text: public

text: uncultured organism

characteristic: common name

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: New York City

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Brooklyn

characteristic: name of the sampling site

text: uncultured organism

text: uncultured organism

text: raw municipal

characteristic: sewage type


characteristic: ENA-CHECKLIST

text: NYU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured organism

characteristic: description

text: USA

text: New York City

text: metagenome

text: Brooklyn and Queens

text: uncultured organism

characteristic: organism

text: uncultured organism

text: raw municipal


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NYU

text: public

characteristic: collection date

text: uncultured organism

text: USA

characteristic: geographic location (country and/or sea)

text: New York City

text: metagenome

text: Brooklyn and Qieens and Manhattan

text: uncultured organism

text: uncultured organism

text: raw municipal

characteristic: title


text: NYU

text: public

text: uncultured organism

characteristic: common name

text: USA

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: New York City

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Broklyn

characteristic: name of the sampling site

text: uncultured organism

text: uncultured organism

text: raw municipal


characteristic: ENA-CHECKLIST

text: NYU

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: uncultured organism

text: USA

text: New York City

text: metagenome

text: Staten Island

text: uncultured organism

text: uncultured organism

text: raw municipal

characteristic: sewage type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NYU

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: uncultured organism

characteristic: description

text: USA

text: New York City

text: metagenome

text: Queens

text: uncultured organism

characteristic: organism

text: uncultured organism

text: raw municipal


characteristic: External Id

text: NYU

text: public

characteristic: collection date

text: uncultured organism

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: New York City

text: metagenome

text: Bronx

text: uncultured organism

text: uncultured organism

text: raw municipal

characteristic: title


characteristic: ENA-CHECKLIST

text: NYU

characteristic: INSDC center name

text: public

text: uncultured organism

text: USA

characteristic: geographic location (longitude)

text: New York City

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Bronx and Manhattan

characteristic: name of the sampling site

text: uncultured organism

text: uncultured organism

text: raw municipal


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NYU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: uncultured organism

text: USA

text: New York City

text: metagenome

text: Manhattan

text: uncultured organism

text: uncultured organism

text: raw municipal

characteristic: sewage type


characteristic: External Id

text: CNGB

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: CNSA

characteristic: broker name

characteristic: collection date

characteristic: description

text: Netherlands : Maastricht

characteristic: geographic location

text: human

characteristic: host

text: 50.85 N 5.69 E

characteristic: latitude and longitude

text: human gut metagenome

characteristic: organism

characteristic: sample name

text: human gut metagenome

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CNGB

characteristic: INSDC center name

text: public

characteristic: age

text: Liu XiHui

characteristic: biomaterial provider

text: CNSA

text: wild sugarcane

characteristic: common name

characteristic: cultivar

text: China: Guangxi, Nanning

text: Saccharum spontaneum

text: Sugarcane genome reads

text: Saccharum spontaneum

text: leaf

characteristic: tissue

text: Saccharum spontaneum PacBio genomic reads

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CNGB

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 65-days-old, 108-days-old

text: Liu XiHui

text: CNSA

characteristic: broker name

text: wild sugarcane

text: China: Guangxi, Nanning

text: Saccharum spontaneum

text: Sugarcane transcriptome reads

text: Saccharum spontaneum

text: leaf, internode and root

text: Saccharum spontaneum PacBio transcriptome reads


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:TECHNICAL UNIVERSITY OF DENMARK, NATIONAL VETERINARY INSTITUTE

characteristic: collection date

text: Denmark

characteristic: geographic location (country and/or sea)

text: Myotis daubentonii

characteristic: host scientific name

text: Bat coronavirus

characteristic: organism

text: Bat coronavirus

text: Alphacoronavirus from Myotis daubentonii in Denmark


text: human lung metagenome

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

text: public

text: human lung metagenome

characteristic: common name

text: human lung metagenome

text: human lung metagenome


E-MTAB-7094:Sample 1

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7094:Sample 1

text: 6 to 8

unit: week

characteristic: age

text: ArrayExpress

text: reticular cell

characteristic: cell type

text: house mouse

text: Protocols: Spleens were harvested and were perfused with RPMI 1640 medium containing 2% FCS, 20 mM Hepes (all from Lonza), 0.2 mg/ml Collagenase P (Sigma Aldrich), 0.8 U/ml Dispase I (Sigma Aldrich) and 100 µg/ml DNaseI (Applichem) with 22G a syringe. Samples were teared into smaller pieces and incubated at 37°C for 30 minutes, with resuspension and collection of supernatant every 15 min to PBS containing 1% FCS and 10 mM EDTA (MACS buffer). To enrich fibroblastic stromal cells, hematopoietic and erythrocytes were depleted by incubating the cell suspension with MACS anti-CD45 and anti-TER119 microbeads (Miltenyi Biotec) and passing them through a MACS LS column (Miltenyi Biotec). EYFP+ cells from Ccl19-iEYFP adult Ccl19-iEYFP and Ccl19-iEYFP Ltbrfl/fl spleens were sorted with a Bio-Rad S3 cell sorter. Single cell suspensions were run on the 10x Chromium (10X Genomics). The cDNA library generation is performed by functional genomic center Zurich following the established commercial protocol for Chromium Single Cell 3’ Reagent Kit (v2 Chemistry) (Catalogue Number PN-120237).

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: 2 mice pooled

characteristic: individual

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-7094:Sample 2

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7094:Sample 2

characteristic: Submitter Id

text: 6 to 8

text: ArrayExpress

characteristic: broker name

text: reticular cell

text: house mouse

text: adult

text: 2 mice pooled

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

text: Mus musculus

text: mixed

text: Sample 2


E-MTAB-7094:Sample 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC center name

text: public

text: E-MTAB-7094:Sample 3

text: 6 to 8

characteristic: age

text: ArrayExpress

text: reticular cell

characteristic: cell type

text: house mouse

characteristic: common name

text: adult

text: 2 mice pooled

text: Mus musculus

characteristic: organism

text: Mus musculus

text: white pulp of spleen

text: Mus musculus

text: mixed

text: Sample 3


E-MTAB-7094:Sample 4

text: public

text: E-MTAB-7094:Sample 4

text: 6 to 8

text: ArrayExpress

text: reticular cell

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

characteristic: genotype

text: 2 mice pooled

characteristic: individual

text: Mus musculus

text: Mus musculus

text: white pulp of spleen

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain

text: Sample 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IHAP

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Mycoplasma agalactiae

text: PG2 55-5 enrofloxacin mutant

text: Mycoplasma agalactiae

text: Mycoplasma agalactiae

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IHAP

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Mycoplasma agalactiae

text: PG2 55-5 enrofloxacin mutant passages

text: Mycoplasma agalactiae

text: Mycoplasma agalactiae


PG2 55-5

text: IHAP

text: public

text: PG2 55-5

text: Mycoplasma agalactiae

characteristic: common name

text: PG2 55-5 parental strain

characteristic: description

text: Mycoplasma agalactiae

characteristic: organism

text: Mycoplasma agalactiae

text: PG2 55-5


text: EBD-CSIC

text: public

text: Eurasian lynx

text: Lynx lynx

text: Lynx lynx

text: Lynx lynx sample


text: EBD-CSIC

text: public

text: bobcat

text: Lynx rufus

text: Lynx rufus

text: Lynx rufus sample


text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

characteristic: subject id

text: FD_jufd_3 _Ctrl_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _L_IL10_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _IFNB_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _IL4_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _P3C_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _IFNG_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _sLPS_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _PIC_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _R848_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _MBP_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _CIL_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _Prec_D0


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _Ctrl_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _L_IL10_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _IFNB_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _IL4_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _P3C_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _IFNG_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _sLPS_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _PIC_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _R848_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _MBP_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _CIL_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_jufd_3 _Prec_D2


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _Ctrl_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _L_IL10_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _IFNB_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _IL4_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _P3C_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _IFNG_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _sLPS_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _PIC_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _R848_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _MBP_6


text: Homo sapiens

text: SC

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text: Homo sapiens

text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _Prec_D0


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text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _Ctrl_24


text: Homo sapiens

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text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _L_IL10_24


text: Homo sapiens

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text: human

text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _IFNB_24


text: Homo sapiens

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text: Homo sapiens

text: Homo sapiens

text: FD_siqu_11 _IL4_24


text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: Homo sapiens

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text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _Ctrl_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _L_IL10_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _IFNB_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _IL4_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _P3C_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _IFNG_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _sLPS_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _PIC_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _R848_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _MBP_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _CIL_6


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _Prec_D0


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _Ctrl_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _L_IL10_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _IFNB_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _IL4_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _P3C_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _IFNG_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _sLPS_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _PIC_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _R848_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _MBP_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _CIL_24


text: Homo sapiens

text: SC

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: FD_oikd_5 _Prec_D2


text: Cryptosporidium hominis

text: SC

text: public

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: Cryptosporidium hominis

text: icddr,b 17


characteristic: ENA checklist

text: Public Health Agency of Sweden

text: public

text: sam_FOHM_c75cd997-14f1-456f-989d-5bd72a70e233

tag: Namespace:Public Health Agency of Sweden

text: FOHM

characteristic: collected by

characteristic: collection date

text: Sweden

characteristic: geographic location (country and/or sea)

text: yes

characteristic: host associated

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UK ESSEN

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UK ESSEN

text: human

text: Pooled blood from 5 young donors as control

text: Homo sapiens

text: Homo sapiens

text: Pooled blood from young men

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UK ESSEN

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Pooled sperm from 5 young donors as control

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Pooled sperm from young men


text: UK ESSEN

text: public

text: human

text: Pooled blood from 5 old donors as index

text: Homo sapiens

text: Homo sapiens

text: Pooled blood from old men


text: UK ESSEN

text: public

text: human

text: Pooled sperm from 5 young donors as index

text: Homo sapiens

text: Homo sapiens

text: Pooled sperm from old men


text: WEIZMANN INSTITUE OF SCIENCE

text: public

tag: Namespace:WEIZMANN INSTITUE OF SCIENCE

text: WT E. coli

text: Escherichia coli

text: Escherichia coli


text: WEIZMANN INSTITUE OF SCIENCE

text: public

text: Temperature sensitive RNase E mutant

text: Escherichia coli

text: Escherichia coli


POLLICE

text: public

text: POLLICE

tag: Namespace:FONDAZIONE E. MACH, VIA E. MACH 1, I-38010, SAN MICHELE ALL'ADIGE (TN)

text: metagenome

text: metagenome

text: POLLICE


text: Mus Musculus

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


Illumina-sample

text: PHE

text: public

text: PAIRED

characteristic: PAIRED

text: Illumina-sample

text: Campylobacter jejuni

text: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

text: Illumina-sample


characteristic: ENA-CHECKLIST

text: PHE

text: public

text: SINGLE

text: Campylobacter jejuni


text: Canis Lupus Familiaris

characteristic: External Id

text: SC

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


characteristic: INSDC first public

text: public

tag: Namespace:VIB-UGent Center for Plant Systems Biology

text: gametophyte

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: Faro

characteristic: geographic location (region and locality)

text: minus

characteristic: mating type

text: Ulva mutabilis

text: Ulva mutabilis

text: slender

characteristic: strain

text: Ulva mutabilis SL


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute for molecular and tumor biology Philipps University  Marburg Germany

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

text: Protocols: OVCAR8 were obtained from NIH. THP-1 were obtained from ATCC. OVCAR-8 (2 x 10^5/12Well); cultured in RPMI1640 10 % FCS, 1% P/S over night; starvation in RPMI 1% BSA for 48 h; treatment Pretreatment: LPA-Mix LPA 16:0 (1 µM) LPA 18:0 (0,25 µM) LPA 18:1 (0,5 µM) LPA 18:2 (1,625 µM) LPA 20:4 (1,625 µM) (5 µM) for the denoted period of time NucleoSpin RNA Kit (Macherey-Nagel, 740955.250); DNA-free™ DNA Removal Kit (ThermoFisher/Ambion, AM1906); according to manufacturer's protocol Libraries were created using the Illumina Truseq mRNA kit v2 used according to the manufacturer's instructions.

text: high grade ovarian serous adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: ovary

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: Institute for molecular and tumor biology Philipps University Marburg Germany

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: ArrayExpress

text: monocyte

text: human

characteristic: common name

characteristic: description

text: acute monocytic leukemia

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

text: ArrayExpress

text: epithelial cell

text: human

text: Homo sapiens

text: Homo sapiens

text: ovary

text: Homo sapiens


text: female

characteristic: ArrayExpress-SEX

text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Streptococcus pneumoniae

text: Female

characteristic: gender

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: subject id


text: male

text: Streptococcus pneumoniae

characteristic: ENA-CHECKLIST

text: SC

text: public

text: Streptococcus pneumoniae

text: Male

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: title


text: Streptococcus pneumoniae

characteristic: ArrayExpress-Species

text: ST1262/ STD 8286

characteristic: ArrayExpress-StrainOrLine

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

text: 15B inoculum stock

characteristic: sample description

text: Streptococcus pneumoniae

text: ST1262/ STD 8286

characteristic: strain


text: Bifidobacterium choerinum

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Bifidobacterium choerinum

characteristic: common name

text: Bifidobacterium choerinum

characteristic: organism

text: Bifidobacterium choerinum

text: Bifidobacterium


text: Bifidobacterium longum

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bifidobacterium longum

text: Bifidobacterium longum

text: Bifidobacterium longum

text: Bifidobacterium


text: Bifidobacterium Bifidum

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: SRA accession

text: Bifidobacterium Bifidum

text: diazotroph str. AB71

text: diazotroph str. AB71

characteristic: subject id

text: Bifidobacterium


text: male

characteristic: ArrayExpress-SEX

text: Bifidobacterium longum

text: SC

text: public

text: Bifidobacterium longum

text: Male

characteristic: gender

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum

text: Bifidobacterium

characteristic: title


text: male

text: Bifidobacterium Bifidum

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Bifidobacterium Bifidum

text: Male

text: diazotroph str. AB71

text: diazotroph str. AB71

text: Bifidobacterium


text: female

text: Bifidobacterium longum

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Bifidobacterium longum

text: Female

text: Fusobacterium nucleatum

text: Fusobacterium nucleatum

text: Bifidobacterium


text: BROOKSUF

characteristic: INSDC first public

text: public

text: horse

text: Equus caballus

text: Equus caballus

text: female

characteristic: sex

text: Total RNA from lamellar section of developmental laminitis case.


text: BROOKSUF

text: public

characteristic: Submitter Id

text: horse

characteristic: common name

text: Equus caballus

text: Equus caballus

text: male


text: BROOKSUF

text: public

text: horse

text: Equus caballus

characteristic: organism

text: Equus caballus

text: female

text: Total RNA from lamellar section of acute laminitis case.


characteristic: ENA-LAST-UPDATE

text: BROOKSUF

text: public

text: horse

text: Equus caballus

text: Equus caballus

text: male

text: Total RNA from lamellar section of control hoof.


text: BROOKSUF

characteristic: INSDC last update

text: public

text: horse

text: Equus caballus

text: Equus caballus

text: male


text: BROOKSUF

text: public

characteristic: INSDC status

text: horse

text: Equus caballus

text: Equus caballus

text: female


characteristic: ENA-CHECKLIST

text: BROOKSUF

text: public

text: horse

text: Equus caballus

text: Equus caballus

text: Pooled total RNA from lamellar sections of control, acute, and developmental laminitis.


text: UCSDMI

text: public

characteristic: SRA accession

text: months

characteristic: age units

characteristic: description

text: TRUE

text: Chernobyl Nuclear Power Plant Exclusion Zone

characteristic: geo loc name

text: Rosoha

characteristic: geography

characteristic: host age

text: Bank vole

characteristic: host common name

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: ad

characteristic: host state

characteristic: host taxid

characteristic: host tot mass g

characteristic: host weight

text: no

characteristic: latitude

text: CEZ

characteristic: location

characteristic: longitude

text: skin metagenome

text: NA (prev. University of Oulu, Department of Ecology and Genetics)

text: FALSE

characteristic: replicate

text: skin

characteristic: sample type

text: skin metagenome

text: male

text: CL

characteristic: treatment

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: months

characteristic: age units

characteristic: description

text: TRUE

text: Rosoha

text: Bank vole

text: Myodes glareolus

text: female

text: yes

text: CEZ

text: skin metagenome

characteristic: organism

text: FALSE

text: skin

text: skin metagenome

text: female

characteristic: sex

characteristic: title

text: CL

text: g


text: UCSDMI

text: public

text: months

text: TRUE

characteristic: geo loc name

text: RedForest

characteristic: geography

characteristic: host age

text: Bank vole

characteristic: host common name

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: ad

characteristic: host state

characteristic: host taxid

characteristic: host tot mass g

characteristic: host weight

text: no

characteristic: latitude

text: CEZ

characteristic: location

characteristic: longitude

text: skin metagenome

text: FALSE

characteristic: replicate

text: skin

characteristic: sample type

text: skin metagenome

text: male

text: CH

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: months

characteristic: age units

characteristic: description

text: TRUE

text: Yampil

text: Bank vole

text: Myodes glareolus

text: female

text: ad

text: yes

text: CEZ

text: skin metagenome

characteristic: organism

text: FALSE

text: skin

text: skin metagenome

text: female

characteristic: sex

text: CL

characteristic: treatment

text: g


text: UCSDMI

text: public

text: months

text: TRUE

characteristic: geo loc name

text: Yampil

characteristic: geography

characteristic: host age

text: Bank vole

characteristic: host common name

text: Myodes glareolus

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host state

characteristic: host taxid

characteristic: host tot mass g

characteristic: host weight

text: no

characteristic: latitude

text: CEZ

characteristic: location

characteristic: longitude

text: skin metagenome

text: FALSE

characteristic: replicate

text: skin

text: skin metagenome

text: female

characteristic: title

text: CL

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: months

characteristic: age units

characteristic: description

text: TRUE

text: Chistogal

text: Bank vole

text: Myodes glareolus

text: male

text: no

text: CEZ

text: skin metagenome

characteristic: organism

text: FALSE

text: skin

characteristic: sample type

text: skin metagenome

text: male

characteristic: sex

text: CH

text: g


text: UCSDMI

text: public

text: months

text: TRUE

characteristic: geo loc name

text: Forestry

characteristic: geography

characteristic: host age

text: Bank vole

characteristic: host common name

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: ad

characteristic: host state

characteristic: host taxid

characteristic: host tot mass g

characteristic: host weight

text: no

characteristic: latitude

text: CEZ

characteristic: location

characteristic: longitude

text: skin metagenome

text: FALSE

characteristic: replicate

text: skin

text: skin metagenome

text: male

text: CH

characteristic: treatment

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: months

characteristic: age units

characteristic: description

text: TRUE

text: Forestry

text: Bank vole

text: Myodes glareolus

text: female

text: ad

text: no

text: CEZ

text: skin metagenome

characteristic: organism

text: FALSE

text: skin

characteristic: sample type

text: skin metagenome

text: female

characteristic: title

text: CH

text: g


text: UCSDMI

text: public

text: months

text: TRUE

characteristic: geo loc name

text: Chistogal

characteristic: geography

characteristic: host age

text: Bank vole

characteristic: host common name

text: Myodes glareolus

characteristic: host scientific name

text: male

characteristic: host sex

text: ad

characteristic: host state

characteristic: host taxid

characteristic: host tot mass g

characteristic: host weight

text: no

characteristic: latitude

text: CEZ

characteristic: location

characteristic: longitude

text: skin metagenome

text: FALSE

characteristic: replicate

text: skin

text: skin metagenome

text: male

characteristic: sex

text: CH

text: g


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: months

characteristic: age units

characteristic: description

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characteristic: geographic location

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text: 50.85 N 5.69 E

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text: human gut metagenome

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text: human gut metagenome

text: human gut metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KEMRI-Wellcome Trust Research Programme

text: public

tag: Namespace:KEMRI-Wellcome Trust Research Programme

text: respiratory airway

characteristic: environment (biome)

text: nasopharynx

characteristic: environment (feature)

text: mucosa of nasopharynx

characteristic: environment (material)

text: Kenya

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-associated

characteristic: human associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Upper airway metagenomic analysis of children in Kilifi, Kenya

characteristic: project name

text: metagenome

text: NGS (Illumina MiSeq)

characteristic: sequencing method

text: Naso- and oropharyngeal metagenomes of children in Kilifi, Kenya

characteristic: title


name: E-MTAB-7114:Human_012h CEBPA replicate 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Bioinformatics and Genomics.

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: B cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: BLaER1 cells are as described here: https://doi.org/10.1016/j.celrep.2013.03.003 and are derived as a subclone of Seraphina cells CVCL_M646. Cells were collected after 12 hours of transdifferentiation. To track the transdifferentiation process along the 7 days it lasts, fluorescent staining of cell surface markers was done with antibodies against Mac1 (APC) and CD19 (APC-Cy7) (BD Pharmigen). Samples were analyzed on the LSRII flow cytometer (BD Biosciences) and data were analyzed with FlowJo software (Tree Star). Human BLaER1 cells and mouse C10 cells were grown in RPMI (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum, 2 mM L-glutamine, and 100 U/ml penicillin G sodium. Transdifferentiation was induced in BlaER1 by addition of 100nM of β-estradiol (Calbiochem) and grown with 10nM of IL-3 and CSF-1 (Peprotech). Cells were crosslinked with 1% formaldehyde for 10 minutes at room temperature and sheared with a Covaris sonicator. 5 μg of chromatin and 5 μg of antibody against rat CEBPA (sc-61 X, Santa Cruz) were incubated in RIPA buffer (140 mM NaCl, 10 mM Tris HCl pH 8.0, 1 mM EDTA, 1 % Triton X-100, 0.1 % SDS, 0.1 % Na deoxycholate, protease inhibitors). DNA libraries were prepared with 1 ng of purified ChIP using NEBNext DNA Library kit for Illumina following the manufacturer’s protocol.

characteristic: description

text: Epstein-Barr virus-related Burkitts lymphoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_012h CEBPA replicate 1


name: E-MTAB-7114:Human_012h CEBPA replicate 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Bioinformatics and Genomics.

text: public

text: ArrayExpress

text: B cell

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_012h CEBPA replicate 2


name: E-MTAB-7114:Human_012h Input replicate 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: B cell

text: human

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_012h Input replicate 1

characteristic: title


name: E-MTAB-7114:Human_012h Input replicate 2

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: B cell

text: human

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_012h Input replicate 2


text: UNI-TUEBINGEN

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: human gut

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: stool

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

text: ASARI

characteristic: project name

text: Homo sapiens

text: Illumina HiSeq, 2 x 150 bp, 550 bp insert size

characteristic: sequencing method

text: Human Stool Sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Department for Veterinary Sciences Ludwig-Maximilians-University Munich

characteristic: age

text: Lohmann Selected Leghorn

characteristic: breed

text: ArrayExpress

characteristic: broker name

text: chicken

characteristic: common name

text: Protocols: Chickens were sacrificed, spleens were collected in ice cold PBS, and kept on ice until immediate RNA extraction. RNA was extracted after homogenization of spleen tissue in TriFast reagent (PeqLab) with Precellys ceramic beads (VWR). Homogenization was carried out using two steps of 20 seconds at 6500rpm with a five minute cooling period in between and afterwards. Extraction of RNA from homogenized sample was performed according to the manufacturer's instruction for use of TriFast Reagent. A cDNA library was prepared from 1 ng total RNA using the Sense mRNA Seq Library Kit V2 (Lexogen) according to the manufacturer's instructions.

characteristic: description

text: wild type genotype

characteristic: genotype

text: Gallus gallus

characteristic: organism

text: Gallus gallus

text: spleen

characteristic: organism part

text: Gallus gallus

text: female

characteristic: sex

characteristic: title


tag: attribute

text: Department for Veterinary Sciences Ludwig-Maximilians-University Munich

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Lohmann Selected Leghorn

text: ArrayExpress

text: chicken

text: wild type genotype

text: Gallus gallus

text: Gallus gallus

text: spleen

text: Gallus gallus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Haematology, University of Cambridge, Cambridge, UK Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, Wellcome Trust - Medical Research Council Cambridge Stem Cell Institute, Cambridge, UK

text: public

tag: Namespace:Department of Haematology, University of Cambridge, Cambridge, UK Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, Cambridge, UK

unit: month

text: ArrayExpress

text: blood cell

characteristic: cell type

characteristic: cluster

text: zebrafish

text: Protocols: Kidneys, guts, spleens, gills and thymuses from transgenic fish were dissected and placed in ice cold PBS/5% foetal bovine serum. Single cell suspensions were generated by first passing through a 40 µm strainer using the plunger of a 1 ml syringe as a pestle. These were then passed through a 20 µm strainer before adding 4',6-diamidino-2-phenylindole (DAPI, Beckman Coulter, cat no B30437) to the samples. For Smart-seq2 experiment individual cells were index sorted into 96 well plates using a BD Influx Index Sorter. Cells from kidney, gut, gills, spleen and thymus from non-transgenic zebrafish line were used for gating. Kidneys, guts, spleens, gills and thymuses from transgenic fish were dissected and placed in ice cold PBS/5% foetal bovine serum. Single cell suspensions were generated by first passing through a 40 µm strainer using the plunger of a 1 ml syringe as a pestle. These were then passed through a 20 µm strainer before adding 4',6-diamidino-2-phenylindole (DAPI, Beckman Coulter, cat no B30437) to the samples. For Smart-seq2 experiment individual cells were index sorted into 96 well plates using a BD Influx Index Sorter. Cells from kidney, gut, gills, spleen and thymus from non-transgenic zebrafish line were used for gating. Samples of sufficient quality were used for library preparation. For tagmentation, we used the Illumina Nextera XT DNA kit, incubating the mixture for 5 min at 55 °C. After stripping the transposase enzyme, adaptor ligation was carried out using the Nextera PCR master mix and index primers, cycling for 12 cycles. The library was then purified again using beads. Following a final Bioanalyzer quality check, the libraries were pooled and diluted to the concentration required for sequencing.

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP)

characteristic: individual

text: Danio rerio

text: Danio rerio

text: kidney

text: EGFP positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: not OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: no cell

characteristic: well information


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

text: zebrafish

characteristic: common name

characteristic: description

text: adult

text: Tg(lck:EGFP)

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: kidney

characteristic: organism part

text: EGFP positive cell

text: Danio rerio

text: male

characteristic: sex

text: not OK

text: AB

characteristic: title

text: no cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: blood cell

characteristic: cell type

text: zebrafish

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP)

text: Danio rerio

text: Danio rerio

text: thymus

text: EGFP positive cell

text: Danio rerio

text: male

text: not OK

text: AB

text: no cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cluster

text: zebrafish

characteristic: common name

text: adult

characteristic: individual

text: Danio rerio

text: Danio rerio

text: kidney

text: mCherry positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: not OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: no cell

characteristic: well information


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

text: blood cell

text: zebrafish

characteristic: description

text: adult

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: spleen

characteristic: organism part

text: mCherry positive cell

text: Danio rerio

text: male

characteristic: sex

text: not OK

text: AB

characteristic: title

text: no cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

characteristic: cluster

text: zebrafish

characteristic: common name

text: adult

characteristic: developmental stage

text: Danio rerio

text: Danio rerio

text: gill

text: mCherry positive cell

text: Danio rerio

text: male

text: not OK

text: AB

text: no cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

text: blood cell

text: zebrafish

characteristic: description

text: adult

characteristic: individual

text: Danio rerio

text: Danio rerio

text: gut

text: mCherry positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: not OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: no cell

characteristic: well information


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: kidney

characteristic: organism part

text: mCherry positive cell

text: Danio rerio

text: male

characteristic: sex

text: not OK

text: AB

characteristic: title

text: no cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Danio rerio

text: Danio rerio

text: thymus

text: mCherry positive cell

text: Danio rerio

text: male

text: not OK

text: AB

text: no cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: blood cell

characteristic: cluster

text: zebrafish

text: adult

text: Tg(mhc2dab:GFP, cd45:dsRed)

characteristic: individual

text: Danio rerio

text: Danio rerio

text: kidney

text: dsRed positive cell

characteristic: phenotype

text: Danio rerio

text: female

text: not OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: no cell

characteristic: well information


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

text: Tg(mhc2dab:GFP, cd45:dsRed)

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: kidney

characteristic: organism part

text: GFP and dsRed positive cell

text: Danio rerio

text: female

characteristic: sex

text: not OK

text: AB

characteristic: title

text: no cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP); Rag1 -/-

text: Danio rerio

text: Danio rerio

text: gut

text: EGFP positive cell

text: Danio rerio

text: female

text: not OK

text: AB

text: no cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

text: Tg(lck:EGFP); Rag1 -/-

characteristic: individual

text: Danio rerio

text: Danio rerio

text: kidney

text: EGFP positive cell

characteristic: phenotype

text: Danio rerio

text: female

text: not OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: no cell

characteristic: well information


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: blood cell

characteristic: cluster

text: zebrafish

text: adult

text: Tg(lck:EGFP)

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: gut

characteristic: organism part

text: EGFP positive cell

text: Danio rerio

text: male

characteristic: sex

text: OK

text: AB

characteristic: title

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP)

text: Danio rerio

text: Danio rerio

text: kidney

text: EGFP positive cell

text: Danio rerio

text: male

text: OK

text: AB

text: single cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: blood cell

characteristic: cluster

text: zebrafish

text: adult

text: Tg(lck:EGFP)

characteristic: individual

text: Danio rerio

text: Danio rerio

text: thymus

text: EGFP positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: single cell

characteristic: well information


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

text: Tg(lck:EGFP)

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: gut

characteristic: organism part

text: EGFP positive cell

text: Danio rerio

text: male

characteristic: sex

text: OK

text: AB

characteristic: title

text: single cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Tg(lck:EGFP)

text: Danio rerio

text: Danio rerio

text: kidney

text: EGFP positive cell

text: Danio rerio

text: male

text: OK

text: AB

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

text: Tg(lck:EGFP)

characteristic: individual

text: Danio rerio

text: Danio rerio

text: thymus

text: EGFP positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: single cell

characteristic: well information


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: blood cell

characteristic: cluster

text: zebrafish

text: adult

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: gill

characteristic: organism part

text: mCherry positive cell

text: Danio rerio

text: male

characteristic: sex

text: OK

text: AB

characteristic: title

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Danio rerio

text: Danio rerio

text: gut

text: mCherry positive cell

text: Danio rerio

text: male

text: OK

text: AB

text: single cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: blood cell

characteristic: cluster

text: zebrafish

text: adult

characteristic: individual

text: Danio rerio

text: Danio rerio

text: kidney

text: mCherry positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: single cell

characteristic: well information


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: spleen

characteristic: organism part

text: mCherry positive cell

text: Danio rerio

text: male

characteristic: sex

text: OK

text: AB

characteristic: title

text: single cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: blood cell

characteristic: cell type

characteristic: cluster

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Danio rerio

text: Danio rerio

text: thymus

text: mCherry positive cell

text: Danio rerio

text: male

text: OK

text: AB

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

characteristic: individual

text: Danio rerio

text: Danio rerio

text: gill

text: mCherry positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: single cell

characteristic: well information


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: blood cell

text: zebrafish

text: adult

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: gut

characteristic: organism part

text: mCherry positive cell

text: Danio rerio

text: male

characteristic: sex

text: OK

text: AB

characteristic: title

text: single cell


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: age

text: ArrayExpress

text: blood cell

characteristic: cell type

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Danio rerio

text: Danio rerio

text: kidney

text: mCherry positive cell

text: Danio rerio

text: male

text: OK

text: AB

text: single cell


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: blood cell

text: zebrafish

text: adult

characteristic: individual

text: Danio rerio

text: Danio rerio

text: spleen

text: mCherry positive cell

characteristic: phenotype

text: Danio rerio

text: male

text: OK

characteristic: single cell well quality

text: AB

characteristic: strain

text: single cell

characteristic: well information


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: blood cell

text: zebrafish

text: adult

characteristic: genotype

text: Danio rerio

characteristic: organism

text: Danio rerio

text: thymus

characteristic: organism part

text: mCherry positive cell

text: Danio rerio

text: male

characteristic: sex

text: OK

text: AB

characteristic: title

text: single cell


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: blood cell

characteristic: cell type

characteristic: cluster

text: zebrafish

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Tg(mhc2dab:GFP, cd45:dsRed)

text: Danio rerio

text: Danio rerio

text: kidney

text: dsRed positive cell

text: Danio rerio

text: female

text: OK

text: AB

text: single cell