characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

text: KCMC-KCRI

text: E coli isolated from wound or pus swab from a 69 year old male patient in medical ward in a referral hospital in Tanzania

text: Tanzania

text: Moshi, Kilimanjaro

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound or pus swab

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST1193/ST95 strain KCRI-598A


status: PUBLIC

tag: attribute

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Kilimanjaro Clinical Research Institute

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

text: wound or pus swab

text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST6332/ST648 strain KCRI-598B

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

text: TZA

text: KCMC-KCRI

text: E coli isolated from diarrhoeal stool from a 28 year old male patient in medical ward in a referral hospital in Tanzania

text: Escherichia

characteristic: genus

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

characteristic: host

text: diseased

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: diarrhoeal stool

characteristic: isolation source

text: gastrointestinal system

text: 3.320 S 37.327 E

characteristic: lat lon

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli ST226 strain KCRI-6

type: AMR curated data - CABBAGE

value: ceftriaxone

value: CLSI

value: disk diffusion

value: susceptible

value: Escherichia coli

value: trimethoprim-sulfamethoxazole

value: ciprofloxacin

value: ampicillin

value: gentamicin

value: chloramphenicol

value: amoxicillin-clavulanic acid

value: cefazolin

value: ceftazidime

value: nalidixic acid


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC first public

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text: TZA

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text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: E coli isolated from wound or pus swab from a 35 year old male patient in surgical ICU in a referral hospital in Tanzania

characteristic: description

text: Escherichia

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: wound or pus swab

text: 3.320 S 37.327 E

text: Escherichia coli

text: Escherichia coli

characteristic: strain

text: Escherichia coli ST1284/ST648 strain KCRI-77E

value: resistant


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text: E coli isolated from diarrhoeal stool from a 47 year old male patient in medical ward in a referral hospital in Tanzania

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characteristic: genus

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characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

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text: Homo sapiens

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text: 3.320 S 37.327 E

text: Escherichia coli

characteristic: organism

text: Escherichia coli

text: Escherichia coli ST156 strain KCRI-82

characteristic: title


text: CHINESE ACADEMY OF SCIENCES

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tag: Namespace:CHINESE ACADEMY OF SCIENCES

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text: wheat

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text: soil

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text: China

unit: m

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characteristic: project name

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text: CHINESE ACADEMY OF SCIENCES

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text: NTNU University Museum

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text: Jonsvatn 15 m

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characteristic: External Id

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text: Jonsvatn 15 m

text: Yes

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text: uncultured eukaryote

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text: NTNU University Museum

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text: Jonsvatn 7.5 m

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (elevation)

text: N51� 52.057'

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text: metagenome

text: uncultured eukaryote

text: project name

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text: Illumina MiSeq

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characteristic: INSDC status

text: Field (riverine area)

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characteristic: geographic location (latitude)

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characteristic: geographic location (longitude)

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characteristic: investigation type

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characteristic: project name

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characteristic: sequencing method

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characteristic: soil environmental package


characteristic: ENA-CHECKLIST

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

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characteristic: geographic location (country and/or sea)

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characteristic: organism

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characteristic: title


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characteristic: INSDC center name

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characteristic: geographic location (latitude)

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characteristic: geographic location (longitude)

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characteristic: investigation type

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characteristic: project name

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characteristic: soil environmental package


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characteristic: INSDC first public

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characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

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text: Netherlands

characteristic: geographic location (country and/or sea)

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text: metagenome

text: uncultured eukaryote

characteristic: organism

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-CHECKLIST

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text: N51� 52.797'

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characteristic: ENA-CHECKLIST

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text: Top-soil

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characteristic: geographic location (latitude)

text: E5� 43.731'

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: uncultured eukaryote

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characteristic: project name

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text: Illumina MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package


text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

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text: Field (riverine area)

text: Top-soil

text: Soil

text: Netherlands

characteristic: geographic location (country and/or sea)

text: N51� 52.468'

text: E5� 46.793'

text: metagenome

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characteristic: organism

text: project name

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characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: public

tag: Namespace:Oxford University Clinical Research Unit, Viet Nam

text: Nepal

text: not provided

characteristic: host health state

text: human

characteristic: host scientific name

text: Klebsiella pneumoniae

characteristic: isolate

text: blood

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: serovar


text: Oxford University Clinical Research Unit, Viet Nam

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Nepal

text: not provided

text: human

text: Klebsiella pneumoniae

text: blood

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Nepal

text: not provided

text: human

text: Klebsiella pneumoniae

text: csf

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: public

characteristic: collection date

text: Nepal

characteristic: geographic location (country and/or sea)

text: not provided

text: human

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MvP

text: public

text: intestine environment

characteristic: environment (biome)

text: organic feature

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Germany

text: 48.134013 N

characteristic: geographic location (latitude)

text: 11.56209100000001 E

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: gut metagenome

text: Evo-OligoMM

characteristic: project name

text: gut metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: KCMC-KCRI

characteristic: collected by

text: Aeromonas caviae isolated from stool from an outpatient in Tanzania

characteristic: description

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: stool

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Aeromonas caviae

text: Aeromonas caviae

characteristic: strain

text: Aeromonas caviae strain KLMC2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Kilimanjaro Clinical Research Institute

text: public

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collection date

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: diseased

text: Homo sapiens

text: stool

text: 3.320 S 37.327 E

text: Aeromonas caviae

characteristic: organism

text: Aeromonas caviae

text: Aeromonas caviae strain KLMC4

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: Mixed bacteria community sample

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: investigation type

text: bacterium

text: Assembly Fluctuations

characteristic: project name

text: bacterium

text: Illumina Miseq 300bp paired-end

characteristic: sequencing method

text: Assembly Fluctuations Data

text: water

characteristic: water environmental package


PCR neg2P1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: public

text: PCR neg2P1

characteristic: Submitter Id

characteristic: collection date

text: Mixed bacteria community sample

text: freshwater

text: lake

text: water

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: bacterium

characteristic: organism

text: Assembly Fluctuations

text: bacterium

text: Illumina Miseq 300bp paired-end

text: Assembly Fluctuations Data

characteristic: title

text: water


PCR neg2P2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PCR neg2P2

text: Mixed bacteria community sample

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

text: water

text: Sweden

text: mimarks-survey

text: bacterium

text: Assembly Fluctuations

text: bacterium

text: Illumina Miseq 300bp paired-end

text: Assembly Fluctuations Data

text: water


mesocosm-Rain

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: public

text: mesocosm-Rain

text: Mixed bacteria community sample

text: freshwater

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Sweden

characteristic: geographic location (depth)

text: mimarks-survey

characteristic: investigation type

text: bacterium

text: Assembly Fluctuations

characteristic: project name

text: bacterium

text: Illumina Miseq 300bp paired-end

characteristic: sequencing method

text: Assembly Fluctuations Data

text: water

characteristic: water environmental package


mesocosm-Air

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: public

text: mesocosm-Air

characteristic: Submitter Id

characteristic: collection date

text: Mixed bacteria community sample

text: freshwater

text: lake

text: water

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

text: bacterium

characteristic: organism

text: Assembly Fluctuations

text: bacterium

text: Illumina Miseq 300bp paired-end

text: Assembly Fluctuations Data

characteristic: title

text: water


mesocosm-PCR-neg

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: mesocosm-PCR-neg

text: Mixed bacteria community sample

characteristic: description

text: freshwater

characteristic: environment (biome)

text: lake

text: water

text: Sweden

text: mimarks-survey

text: bacterium

text: Assembly Fluctuations

text: bacterium

text: Illumina Miseq 300bp paired-end

text: Assembly Fluctuations Data

text: water


E-MTAB-6739:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-6739:Sample 1

tag: Namespace:Department of Gastroenterology and Hepatology University Hospital Zurich / University of Zurich

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: peripheral blood mononuclear cells

characteristic: cell type

text: remission upon azathioprine treatment

characteristic: clinical history

text: human

characteristic: common name

text: Protocols: Peripheral blood (10ml) was drawn from three patients with sustained remission following Azathioprine treatment and three patients refractory to treatment. Blood was stored in BD Vacutainer K2 EDTA tubes at 4°C before further processing. Puri-Nethol is the brand name for mercaptopurine used and Imurek (given to individuals 5 and 6) is the brand name for Azathioprine. miRNeasy Mini Kit, Qiagen Cat no: 217004 The quality of the isolated RNA was determined with a Qubit® (1.0) Fluorometer (Life Technologies, California, USA) and a Bioanalyzer 2100 (Agilent, Waldbronn, Germany). Only those samples with a 260 nm/280 nm ratio between 1.8-2.1 and a 28S/18S ratio within 1.5-2 were further processed. The TruSeq RNA Sample Prep Kit v2 (Illumina, Inc, California, USA) was used in the succeeding steps. Briefly, total RNA samples (100-1000 ng) were poly A enriched and then reverse-transcribed into double-stranded cDNA. The cDNA samples was fragmented, end-repaired and polyadenylated before ligation of TruSeq adapters containing the index for multiplexing Fragments containing TruSeq adapters on both ends were selectively enriched with PCR. The quality and quantity of the enriched libraries were validated using Qubit® (1.0) Fluorometer and the Caliper GX LabChip® GX (Caliper Life Sciences, Inc., USA). The product is a smear with an average fragment size of approximately 260 bp. The libraries were normalized to 10nM in Tris-Cl 10 mM, pH8.5 with 0.1% Tween 20.

text: colitis ulcerosa

characteristic: disease

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1


E-MTAB-6739:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Gastroenterology and Hepatology University Hospital Zurich / University of Zurich

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-6739:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: peripheral blood mononuclear cells

text: remission upon azathioprine treatment

text: human

text: colitis ulcerosa

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 2

characteristic: title


E-MTAB-6739:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6739:Sample 3

text: ArrayExpress

text: peripheral blood mononuclear cells

text: remission upon azathioprine treatment

text: human

characteristic: description

text: colitis ulcerosa

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-6739:Sample 4

text: public

text: E-MTAB-6739:Sample 4

characteristic: age

text: ArrayExpress

characteristic: broker name

text: peripheral blood mononuclear cells

characteristic: cell type

text: refractory upon azathioprine treatment

characteristic: clinical history

text: human

characteristic: common name

text: colitis ulcerosa

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-6739:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: E-MTAB-6739:Sample 5

text: ArrayExpress

text: peripheral blood mononuclear cells

text: refractory upon azathioprine treatment

text: human

text: colitis ulcerosa

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: Sample 5


E-MTAB-6739:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-6739:Sample 6

characteristic: Submitter Id

text: ArrayExpress

text: peripheral blood mononuclear cells

text: refractory upon azathioprine treatment

text: human

text: colitis ulcerosa

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: male

text: Sample 6

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:INSTITUT DE BIOLOGIA EVOLUTIVA (CSIC-UPF)

characteristic: collection date

text: human

text: Spain

characteristic: geographic location (region and locality)

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS017 sample


characteristic: ENA-CHECKLIST

text: INSTITUT DE BIOLOGIA EVOLUTIVA (CSIC-UPF)

text: public

text: human

characteristic: common name

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS015 sample


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS023 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS025 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS027 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS028 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS032 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS038 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS039 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS014 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS021 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS018 sample


text: public

text: human

text: Spain

text: Homo sapiens

text: Homo sapiens

text: Male

text: Whole-genome sequence reads of BBS019 sample


text: ILVO

text: public

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: soil metagenome

text: FWO

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILVO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: compost

characteristic: description

text: soil

text: compost soil

text: soil

text: Belgium

text: metatranscriptome

text: soil metagenome

characteristic: organism

text: FWO

text: soil metagenome

text: Illumina

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ILVO

characteristic: INSDC center name

text: public

text: soil

characteristic: environment (biome)

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metatranscriptome

text: soil metagenome

text: FWO

text: soil metagenome

text: Illumina

text: soil

text: metatrans soil


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILVO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: compost

text: soil

text: compost soil

text: soil

text: Belgium

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: soil metagenome

text: FWO

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: metatrans soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ILVO

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil

characteristic: description

text: soil

characteristic: environment (biome)

text: agricultural soil

text: soil

text: Belgium

text: metatranscriptome

text: soil metagenome

characteristic: organism

text: FWO

text: soil metagenome

text: Illumina

text: soil

text: metatrans

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILVO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: soil-no DNAse treatment

text: soil

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metatranscriptome

text: soil metagenome

text: FWO

text: soil metagenome

text: Illumina

text: soil

text: metatrans


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ILVO

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: compost - no DNase treatment

text: soil

text: compost soil

text: soil

text: Belgium

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: soil metagenome

text: FWO

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: metatrans


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILVO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: potting soil P1

characteristic: description

text: soil

characteristic: environment (biome)

text: agricultural soil

text: soil

text: Belgium

text: metatranscriptome

text: soil metagenome

characteristic: organism

text: FWO

text: soil metagenome

text: Illumina

text: soil

text: metatrans

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ILVO

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: potting soil P2

text: soil

text: agricultural soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Belgium

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

text: metatranscriptome

text: soil metagenome

text: FWO

text: soil metagenome

text: Illumina

text: soil

text: metatrans


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ILVO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: rhizosphere sample P1

text: soil

text: rhizosphere

text: soil

text: Belgium

characteristic: geographic location (longitude)

text: metatranscriptome

characteristic: investigation type

text: soil metagenome

text: FWO

characteristic: project name

text: soil metagenome

text: Illumina

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: metatrans


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ILVO

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: Submitter Id

characteristic: collection date

text: rhizosphere sample

characteristic: description

text: soil

characteristic: environment (biome)

text: rhizosphere

text: soil

text: Belgium

text: metatranscriptome

text: soil metagenome

characteristic: organism

text: FWO

text: soil metagenome

text: Illumina

text: soil

text: metatrans

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIBE-IG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: cattle

characteristic: common name

text: Holstein - male

text: Bos taurus

text: Bos taurus

text: Holstein


text: UNIBE-IG

text: public

characteristic: SRA accession

text: cattle

text: Brown Swiss - female

text: Bos taurus

text: Bos taurus

text: Brown Swiss


text: UNIBE-IG

text: public

text: cattle

text: Holstein - female

text: Bos taurus

text: Bos taurus

text: Holstein


text: UNIBE-IG

text: public

text: cattle

text: Original Braunvieh - male

text: Bos taurus

text: Bos taurus

text: Original Braunvieh


text: UNIBE-IG

text: public

text: cattle

text: Original Braunvieh - female

text: Bos taurus

text: Bos taurus

text: Original Braunvieh


text: UNIBE-IG

text: public

text: cattle

text: Brown Swiss - male

text: Bos taurus

text: Bos taurus

text: Brown Swiss


text: UNIBE-IG

text: public

text: cattle

text: Simmental - male

text: Bos taurus

text: Bos taurus

text: Simmental


text: UNIBE-IG

text: public

text: cattle

text: Shorthorn - female

text: Bos taurus

text: Bos taurus

text: Shorthorn


text: INSTITUT PASTEUR

text: public

tag: Namespace:INSTITUT PASTEUR

text: Aequorivita lipolytica

text: Aequorivita lipolytica

characteristic: strain

text: Aequorivita lipolytica CIP107455T genome


characteristic: ENA-CHECKLIST

text: INSTITUT PASTEUR

text: public

text: Aequorivita antarctica

text: Aequorivita antarctica

text: Aequorivita antarctica CIP107457T genome


characteristic: ENA-FIRST-PUBLIC

text: The James Hutton Institute

text: public

tag: Namespace:The James Hutton Institute

text: potato

text: tuber tissue from a time course experiment, 0 hour time point, 30oc day temperature

text: Solanum tuberosum

text: Solanum tuberosum

text: Tuber, ZT0, 30oC


text: The James Hutton Institute

characteristic: INSDC center name

text: public

text: potato

text: tuber tissue from a time course experiment, 0 hour time point, 22oc day temperature

text: Solanum tuberosum

text: Solanum tuberosum

text: Tuber, ZT0, 22oC


text: DSMZ

text: public

characteristic: INSDC status

text: Germany

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: stool sample

characteristic: isolation source

text: Clostridioides difficile

text: Clostridioides difficile

text: Stool samples


text: UNIVERSITY OF CALIFORNIA BERKELEY

text: public

tag: Namespace:UNIVERSITY OF CALIFORNIA BERKELEY

characteristic: Submitter Id

text: metagenome

characteristic: organism

text: metagenome

text: Microbial Consortia

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

tag: Namespace:KOALA GENOME CONSORTIUM

text: Currumbin Wildlife Hospital

characteristic: collected by

characteristic: collection date

text: koala

text: Bilateral conjunctivitis (2/3), bilateral ovarian cysts - euthanised. BCS 7/10, tooth wear 6yrs.

characteristic: description

text: Australia

text: Elanora

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from 53417 'Venus', recorded by veterinarians as diseased


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Currumbin Wildlife Hospital

text: koala

characteristic: common name

text: Attacked by dog. Maggots in multiple, deep chronic wounds. Eyes clear but emaciated, 4.2kg. Hopeless prognosis, euthanised.

text: Australia

characteristic: geographic location (country and/or sea)

text: Upper Horseshoe Creek

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from 54364 'Shelby', recorded by veterinarians as healthy


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KOALA GENOME CONSORTIUM

text: public

characteristic: Submitter Id

text: Currumbin Wildlife Hospital

text: koala

text: BSC 6/10, tooth wear 6yrs. ovarian cysts, assoc cystitis. bilateral severe conjunctivitis (3). cysitits=1. euthanised

text: Australia

text: Duroby, Gold Coast

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from 54555 'Hall', recorded by veterinarians as diseased

characteristic: title


text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collected by

characteristic: collection date

text: koala

text: Had scarring to this eye from penetration injury. Never had chlamydia to my knowledge.

characteristic: description

text: Australia

text: Maleny

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from 57731 'Mandy', recorded by veterinarians as healthy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Australia Zoo Wildlife Hospital

text: koala

text: Multiple jaw fractures, ruptured left eye

text: Australia

text: Kilkivan

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from 58464 'Yorky', recorded by veterinarians as healthy


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KOALA GENOME CONSORTIUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Australia Zoo Wildlife Hospital

text: koala

characteristic: common name

text: Has a 10g joey that unfortunately died overnight.

text: Australia

characteristic: geographic location (country and/or sea)

text: Wellington Point

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from 59230 'Hollie', recorded by veterinarians as diseased


text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Australia Zoo Wildlife Hospital

characteristic: collected by

text: koala

text: Australia

text: Wellington Point

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: F

text: conjunctival swab

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collection date

text: koala

text: Australia

text: Reesville

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from 59796 'Stump', recorded by veterinarians as healthy (but possible lymphoma)


characteristic: ENA-LAST-UPDATE

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Australia Zoo Wildlife Hospital

text: koala

text: Extremely emaciated. (Leukaemia case)

characteristic: description

text: Australia

text: Ormiston

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from 60060 'Bluey', recorded by veterinarians as healthy


characteristic: External Id

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Australia Zoo Wildlife Hospital

text: koala

characteristic: common name

text: Had concurrent myelodysplasia. Euthanised at admission (no treatments)

text: Australia

characteristic: geographic location (country and/or sea)

text: Capalaba

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

text: conjunctival biopsey

text: Ocular sample from 60251 'Matt', recorded by veterinarians as diseased


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

text: public

characteristic: Submitter Id

text: Australia Zoo Wildlife Hospital

characteristic: collected by

text: koala

text: Australia

text: Capalaba

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: M

text: conjunctival swab

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collection date

text: koala

text: Unilateral conjunctivitis and cystisis. Had renal disease but no repro disease evident.

text: Australia

text: Ocean View

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from 60974 'Kathryn', recorded by veterinarians as diseased


characteristic: External Id

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Australia Zoo Wildlife Hospital

text: koala

text: Bilateral Conjunctivitis. Reproductive disease. Also used by Aust museum for genetic tissue harvest study.

characteristic: description

text: Australia

text: Upper Brookfield

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from 61053 'Bilbo', recorded by veterinarians as diseased


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Australia Zoo Wildlife Hospital

text: koala

characteristic: common name

text: Bilateral Conjunctivitis. Reproductive disease

text: Australia

characteristic: geographic location (country and/or sea)

text: Narangbah

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from 61169 'Birdie', recorded by veterinarians as diseased


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KOALA GENOME CONSORTIUM

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collected by

text: koala

text: Bilateral Conjunctivitis, severe ulceration of both�eyes. Severe melting ulcers in both eye

text: Australia

text: Mt Gravatt

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: M

text: conjunctival biopsey

text: Ocular sample from 61185 'Kelab', recorded by veterinarians as diseased

characteristic: title


characteristic: External Id

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collection date

text: koala

text: HBC U/S found ovarian bursal cysts

text: Australia

text: Norayfield

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from 61293 'Florianda', recorded by veterinarians as healthy


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Australia Zoo Wildlife Hospital

text: koala

text: Severe cystitis, no conjunctivitis. Very poor BCS. Renal disease and fungal dermatitis

characteristic: description

text: Australia

text: Warner

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from 61658 'Anna', recorded by veterinarians as healthy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KOALA GENOME CONSORTIUM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Australia Zoo Wildlife Hospital

text: koala

characteristic: common name

text: Right ovarian bursal cysts

text: Australia

characteristic: geographic location (country and/or sea)

text: Lawnton

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from 61818 'Melly', recorded by veterinarians as diseased


characteristic: External Id

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collected by

text: koala

text: Cystitis, reproductive cysts. Fractured jaw

text: Australia

text: Australia Zoo Wildlife Hospital

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from 62666 'Mary', recorded by veterinarians as healthy

characteristic: title


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collection date

text: koala

text: Poor BCS. Covered in ticks. Non-regenerative anaemia. Dilated ureter (right kidney)

text: Australia

text: Australia Zoo Wildlife Hospital

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from 62993 'NA', recorded by veterinarians as diseased


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: KOALA GENOME CONSORTIUM

text: public

characteristic: INSDC status

text: Australia Zoo Wildlife Hospital

text: koala

text: Australia

text: Australia Zoo Wildlife Hospital

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from 67384 'Scooby', recorded by veterinarians as diseased


characteristic: External Id

text: KOALA GENOME CONSORTIUM

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Australia Zoo Wildlife Hospital

text: koala

characteristic: common name

text: Unilateral conjunctiviitis. Bilateral cysts with UG cystitis

characteristic: description

text: Australia

characteristic: geographic location (country and/or sea)

text: Burpengary

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

text: conjunctival swab

text: Ocular sample from 68293 'Spring', recorded by veterinarians as diseased


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

text: public

text: Australia Zoo Wildlife Hospital

characteristic: collected by

text: koala

text: Australia

text: Burpengary

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Moggill Koala Hospital

characteristic: collection date

text: koala

text: Chornic cytitis, bilateral ovarian bursa palpable. euthansied. Eyes clear

text: Australia

text: Shailer Park

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from A62392, recorded by veterinarians as diseased


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KOALA GENOME CONSORTIUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Moggill Koala Hospital

text: koala

text: Bilateral ovarian cysts, euthenised. eyes clear

text: Australia

text: Burpengary

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from A62470, recorded by veterinarians as diseased


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Moggill Koala Hospital

text: koala

characteristic: common name

text: Injured in vehicle collision. eyes clear, cysitis = 0. body score 3. treated with 2 Bactrim x 5 days.

characteristic: description

text: Australia

characteristic: geographic location (country and/or sea)

text: Petrie

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: M

text: conjunctival biopsey

text: Ocular sample from A62471 'Alec', recorded by veterinarians as healthy


characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

text: Moggill Koala Hospital

characteristic: collected by

text: koala

text: G1 both eyes, mild conjunctivitis. mild cystitis (2). palpable ovarian bursitis. body score 4

text: Australia

text: Albany Creek

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from A62473, recorded by veterinarians as diseased

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KOALA GENOME CONSORTIUM

characteristic: INSDC last update

text: public

text: Moggill Koala Hospital

characteristic: collection date

text: koala

text: Blind in both eyes, bilaterally palpation

text: Australia

text: Thornlands

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from A62711, recorded by veterinarians as diseased


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Moggill Koala Hospital

text: koala

text: Very poor body score. severe cystitis and bilateral conjunctivitis. Euthenised

text: Australia

text: Mansfield

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: specimen voucher

text: conjunctival swab

characteristic: tissue type

text: Ocular sample from A62721, recorded by veterinarians as diseased


characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Moggill Koala Hospital

text: koala

characteristic: common name

text: Grade 3 cystitis, euthenised on arrival. No conjunctivitis.

characteristic: description

text: Australia

characteristic: geographic location (country and/or sea)

text: Whiteside

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from A63802, recorded by veterinarians as diseased


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KOALA GENOME CONSORTIUM

text: public

text: Moggill Koala Hospital

characteristic: collected by

text: koala

text: Very severe cystis, prolapse. very poor body condition. euthanised. Eyes clear. Note accidently put UGT swab in eye tube.

text: Australia

text: Lockyer Waters

characteristic: isolate

text: Phascolarctos cinereus

characteristic: organism

text: Phascolarctos cinereus

text: F

text: conjunctival biopsey

text: Ocular sample from A64063, recorded by veterinarians as diseased

characteristic: title


characteristic: ENA-CHECKLIST

text: KOALA GENOME CONSORTIUM

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Moggill Koala Hospital

characteristic: collection date

text: koala

text: Bilateral bursaries, palpable

text: Australia

text: Jimboomba

characteristic: geographic location (region and locality)

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: sex

text: conjunctival biopsey

text: Ocular sample from A65604, recorded by veterinarians as diseased


characteristic: ENA-FIRST-PUBLIC

text: KOALA GENOME CONSORTIUM

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Moggill Koala Hospital

text: koala

text: 2 large bilateral bursas, palpable. cystis grade 2. euthenised. left eye G3. right eye clear

text: Australia

text: Acreage

text: Phascolarctos cinereus

text: Phascolarctos cinereus

text: F

characteristic: specimen voucher

text: conjunctival biopsey

characteristic: tissue type

text: Ocular sample from A65609, recorded by veterinarians as diseased


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LAVAL UNIVERSITY

text: public

tag: Namespace:LAVAL UNIVERSITY

characteristic: Submitter Id

text: mouse

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Canada

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: Vitamine D-omega-3

characteristic: project name

text: mouse gut metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: Vitamin D�supplementation does not prevent the development of metabolic syndrome or enhance the beneficial effects of omega-3 fatty acids in diet-induced obese mice


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter baumannii isolated from wound swab from a 20 year old female patient with burn wound in surgical ward in a tertiary hospital in Tanzania

characteristic: description

text: Acinetobacter

characteristic: genus

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: isolate

text: wound swab sample

characteristic: isolation source

text: skin or soft tissue

text: 3.320 S 37.327 E

characteristic: lat lon

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: strain

text: Acinetobacter baumannii ST499/ST345 strain KCRI-116

characteristic: title

value: Acinetobacter baumannii

value: intermediate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 71 year old female patient with cut wound in surgical ward in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: female

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST499/ST345 strain KCRI-123C

value: ceftriaxone


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter baumannii isolated from wound swab from a 92 year old female patient with bedsores in surgical ward in a tertiary hospital in Tanzania

characteristic: description

text: Acinetobacter

characteristic: genus

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: isolate

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii strain KCRI-164C

value: CLSI


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 63 year old male patient with chronic leg ulcer in surgical ward in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: male

text: wound swab sample

characteristic: isolation source

text: skin or soft tissue

text: 3.320 S 37.327 E

characteristic: lat lon

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: strain

text: Acinetobacter baumannii strain KCRI-186

characteristic: title

value: disk diffusion


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter baumannii isolated from wound swab from a 33 year old male patient with cancerous wound in surgical ward in a tertiary hospital in Tanzania

characteristic: description

text: Acinetobacter

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: male

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST2 strain KCRI-28


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 21 year old male patient with cellulitis in surgical ward in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: isolate

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST499/ST345 strain KCRI-309C

value: susceptible


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter baumannii isolated from sputum from a 49 year old male patient with respiratory infection in medical ward in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: male

text: sputum sample

characteristic: isolation source

text: respiratory tract

text: 3.320 S 37.327 E

characteristic: lat lon

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: strain

text: Acinetobacter baumannii ST979 strain KCRI-33

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 58 year old female patient with scalp tumor in surgical ward in a tertiary hospital in Tanzania

characteristic: description

text: Acinetobacter

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: female

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST1 strain KCRI-363


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter baumannii isolated from wound swab from a 49 year old male patient with chronic ulcer in surgical ward in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: isolate

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST1 strain KCRI-423


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 45 year old female patient with burst abdomen in surgical ICU in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: female

text: wound swab sample

characteristic: isolation source

text: skin or soft tissue

text: 3.320 S 37.327 E

characteristic: lat lon

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: strain

text: Acinetobacter baumannii ST625/ST860 strain KCRI-432B

characteristic: title


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter baumannii isolated from wound swab from a 11 year old female patient with burn wound in surgical ICU in a tertiary hospital in Tanzania

characteristic: description

text: Acinetobacter

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: female

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST625/ST860 strain KCRI-43


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 29 year old female patient with burn wound in surgical ward in a tertiary hospital in Tanzania

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: Homo sapiens

characteristic: host

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: isolate

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST374/ST1325 strain KCRI-49


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: TZA

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter

text: Tanzania

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: female

text: wound swab sample

characteristic: isolation source

text: skin or soft tissue

text: 3.320 S 37.327 E

characteristic: lat lon

text: Acinetobacter baumannii

characteristic: organism

text: Acinetobacter baumannii

characteristic: strain

text: Acinetobacter baumannii ST1 strain KCRI-518B

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TZA

text: KCMC-KCRI

text: Acinetobacter baumannii isolated from wound swab from a 76 year old male patient with diabetes mellitus wound in surgical ward in a tertiary hospital in Tanzania

characteristic: description

text: Acinetobacter

characteristic: genus

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: Homo sapiens

text: diseased

text: Homo sapiens

text: male

text: wound swab sample

text: skin or soft tissue

text: 3.320 S 37.327 E

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii ST1 strain KCRI-558


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: Acinetobacter haemolyticus isolated from wound swab from a 51 year old male patient with chronic tropical ulcer in surgical ward in a tertiary hospital in Tanzania

text: Tanzania

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound swab sample

text: 3.320 S 37.327 E

text: Acinetobacter haemolyticus

text: Acinetobacter haemolyticus

text: Acinetobacter haemolyticus strain KCRI-348C


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Kilimanjaro Clinical Research Institute

characteristic: INSDC center name

text: public

text: KCMC-KCRI

text: Acinetobacter oleivorans isolated from wound swab from a 45 year old male patient with wound infection in surgical ward in a tertiary hospital in Tanzania

text: Tanzania

text: Moshi, Kilimanjaro

text: diseased

text: Homo sapiens

text: wound swab

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Acinetobacter oleivorans

characteristic: organism

text: Acinetobacter oleivorans

characteristic: strain

text: Acinetobacter oleivorans strain KCRI-35

characteristic: title


text: Kilimanjaro Clinical Research Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: KCMC-KCRI

text: Acinetobacter soli isolated from sputum from a 62 year old male patient with pneumonia in medical ward in a tertiary hospital in Tanzania

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

text: diseased

text: Homo sapiens

text: sputum

text: 3.320 S 37.327 E

text: Acinetobacter soli

text: Acinetobacter soli

text: Acinetobacter soli strain KCRI-42


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

tag: Namespace:YORK UNIVERSITY

characteristic: collection date

text: terrestial biome

characteristic: environment (biome)

text: farm soil

characteristic: environment (feature)

text: agricultural soil

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

characteristic: investigation type

text: soil metagenome

text: iChip

characteristic: project name

text: soil metagenome

text: pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: terrestial biome

text: forest

text: forest soil

text: United Kingdom

text: metagenome

text: soil metagenome

characteristic: organism

text: iChip

text: soil metagenome

text: pyrosequencing

text: soil

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Kilimanjaro Clinical Research Institute

text: public

text: KCMC-KCRI

characteristic: collected by

characteristic: collection date

text: P. aeruginosa isolated from wound swab from a 92 year old female patient with bedsore in surgical ward in a tertiary hospital in Tanzania

characteristic: description

text: Tanzania

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Moshi, Kilimanjaro

characteristic: geographic location (region and locality)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: wound swab sample

characteristic: isolation source

text: 3.320 S 37.327 E

characteristic: lat lon

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: strain

text: Pseudomonas aeruginosa ST1907 strain KCRI-164A