characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

text: public

text: Severely preterm infant

text: Gastrointestinal tract

text: Oral catheter secretion

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Newcastle upon Tyne, Tyne & Wear

characteristic: geographic location (region and locality)

text: Mucus

characteristic: host body product

text: human-associated

characteristic: human associated environmental package

text: mimarks-survey

characteristic: investigation type

text: human gut metagenome

text: 515F and 806R (Caporaso et al., 2011)

characteristic: pcr primers

characteristic: perturbation

text: SERVIS research Project

characteristic: project name

text: Flushed catheter lumen

characteristic: sample collection device or method

text: Northumbria University

characteristic: sample storage location

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: human gut metagenome

text: Illumina Sequencing by synthesis

characteristic: sequencing method

text: 16s rRNA gene

text: V4 region

text: Oral catheter secretion sample collected from significantly preterm neonates

characteristic: title


POS

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NORTHUMBRIA UNIVERSITY, NEWCASTLE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: POS

characteristic: Submitter Id

unit: g

characteristic: amount or size of sample collected

characteristic: collection date

text: Severely preterm infant

characteristic: environment (biome)

text: Gastrointestinal tract

characteristic: environment (feature)

text: Sequencing positive ctrl

characteristic: environment (material)

text: United Kingdom

unit: DD

text: Newcastle upon Tyne, Tyne & Wear

text: human-associated

text: mimarks-survey

text: human gut metagenome

characteristic: organism

text: 515F and 806R (Caporaso et al., 2011)

text: SERVIS research Project

text: Northumbria University

unit: °C

text: human gut metagenome

text: Illumina Sequencing by synthesis

text: 16s rRNA gene

characteristic: target gene

text: V4 region

characteristic: target subfragment

text: Sequencing positive ctrl


E-MTAB-7016:Sample 103

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7016:Sample 103

tag: Namespace:Laboratory of Systems and Synthetic Biology Wageningen University & Research

text: ArrayExpress

characteristic: broker name

text: Protocols: After steady state was reached, 8mL samples were taken for RNA extraction (approximately 10 mgDW). Cells were immediately collected by centrifugation (4255 xg, 0°C for 5 min), supernatant was discarded and pellets were frozen in liquid nitrogen and stored at -80°C until further extraction. Samples for RNA extraction were taken in intervals of 1h for WT or every 3h for slm1. 16:8h diurnal cycle adapted cells. Dilution medium (Breuer et al., 2013) was prepared without KNO3 and KNO3 was separately fed at 0.075 gN·L-1day-1 for the wild-type and 0.052 gN·L-1day-1 for the slm1. This corresponds to a nitrogen limitation of 30% of the nitrogen consumption rate observed under nitrogen replete and light limitation (Remmers et al., 2017). Dilution medium was only added during the light period and switched off during the night. RNA extraction was performed using the Maxwell® 16 LEV simplyRNA Tissue kit (Promega). Frozen algae pellet (≈200 μL) were submerged in 400 μL of homogenizing buffer supplemented with 8 μL 1-thioglycerol in a 2 mL Lysing matrix C tube (MP), prefilled with a mix of glass beads. Samples were disrupted using a FastPrep-24 instrument (MP). After disruption, all liquid was transferred to a LEV RNA Cartridge. 300 μL lysis buffer were added and the rest of the extraction was performed using a Maxwell MDx AS3000 machine (Promega) following manufacturer’s instructions. RNA integrity and quantity were assessed with an Experion system (Bio-Rad), and only high quality samples (RIN value ≥ 7) were selected. Random library

characteristic: description

text: nitrogen limited conditions

characteristic: environmental stress

text: slm1 homozygous mutant

characteristic: genotype

text: diurnal cycle 16:8h

characteristic: growth condition

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

characteristic: strain

text: Sample 103

characteristic: title


E-MTAB-7016:Sample 104

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Systems and Synthetic Biology Wageningen University & Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7016:Sample 104

characteristic: Submitter Id

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 104


E-MTAB-7016:Sample 105

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7016:Sample 105

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

characteristic: organism

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 105


E-MTAB-7016:Sample 106

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7016:Sample 106

text: ArrayExpress

characteristic: broker name

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 106


E-MTAB-7016:Sample 113

text: public

text: E-MTAB-7016:Sample 113

text: ArrayExpress

characteristic: description

text: nitrogen limited conditions

characteristic: environmental stress

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 113


E-MTAB-7016:Sample 114

text: public

text: E-MTAB-7016:Sample 114

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

characteristic: genotype

text: diurnal cycle 16:8h

characteristic: growth condition

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 114


E-MTAB-7016:Sample 38

text: public

text: E-MTAB-7016:Sample 38

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

characteristic: strain

text: Sample 38

characteristic: title


E-MTAB-7016:Sample 95

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7016:Sample 95

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 95


E-MTAB-7016:Sample 37

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7016:Sample 37

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 37


E-MTAB-7016:Sample 76

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7016:Sample 76

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 76


E-MTAB-7016:Sample 83

text: public

characteristic: SRA accession

text: E-MTAB-7016:Sample 83

characteristic: Submitter Id

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 83


E-MTAB-7016:Sample 84

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7016:Sample 84

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

characteristic: organism

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 84


E-MTAB-7016:Sample 85

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7016:Sample 85

text: ArrayExpress

characteristic: broker name

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 85


E-MTAB-7016:Sample 86

text: public

text: E-MTAB-7016:Sample 86

text: ArrayExpress

characteristic: description

text: nitrogen limited conditions

characteristic: environmental stress

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 86


E-MTAB-7016:Sample 93

text: public

text: E-MTAB-7016:Sample 93

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

characteristic: genotype

text: diurnal cycle 16:8h

characteristic: growth condition

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 93


E-MTAB-7016:Sample 94

text: public

text: E-MTAB-7016:Sample 94

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

characteristic: strain

text: Sample 94

characteristic: title


E-MTAB-7016:Sample 100

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7016:Sample 100

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 100


E-MTAB-7016:Sample 101

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7016:Sample 101

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 101


E-MTAB-7016:Sample 102

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7016:Sample 102

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 102


E-MTAB-7016:Sample 107

text: public

characteristic: SRA accession

text: E-MTAB-7016:Sample 107

characteristic: Submitter Id

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 107


E-MTAB-7016:Sample 108

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7016:Sample 108

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

characteristic: organism

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 108


E-MTAB-7016:Sample 109

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7016:Sample 109

text: ArrayExpress

characteristic: broker name

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 109


E-MTAB-7016:Sample 110

text: public

text: E-MTAB-7016:Sample 110

text: ArrayExpress

characteristic: description

text: nitrogen limited conditions

characteristic: environmental stress

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 110


E-MTAB-7016:Sample 111

text: public

text: E-MTAB-7016:Sample 111

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

characteristic: genotype

text: diurnal cycle 16:8h

characteristic: growth condition

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 111


E-MTAB-7016:Sample 112

text: public

text: E-MTAB-7016:Sample 112

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

characteristic: strain

text: Sample 112

characteristic: title


E-MTAB-7016:Sample 96

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7016:Sample 96

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 96


E-MTAB-7016:Sample 97

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7016:Sample 97

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 97


E-MTAB-7016:Sample 98

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7016:Sample 98

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 98


E-MTAB-7016:Sample 99

text: public

characteristic: SRA accession

text: E-MTAB-7016:Sample 99

characteristic: Submitter Id

text: ArrayExpress

text: nitrogen limited conditions

text: slm1 homozygous mutant

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 99


E-MTAB-7016:Sample 77

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7016:Sample 77

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

characteristic: organism

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 77


E-MTAB-7016:Sample 78

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7016:Sample 78

text: ArrayExpress

characteristic: broker name

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 78


E-MTAB-7016:Sample 79

text: public

text: E-MTAB-7016:Sample 79

text: ArrayExpress

characteristic: description

text: nitrogen limited conditions

characteristic: environmental stress

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 79


E-MTAB-7016:Sample 80

text: public

text: E-MTAB-7016:Sample 80

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

characteristic: genotype

text: diurnal cycle 16:8h

characteristic: growth condition

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 80


E-MTAB-7016:Sample 81

text: public

text: E-MTAB-7016:Sample 81

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

characteristic: strain

text: Sample 81

characteristic: title


E-MTAB-7016:Sample 82

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7016:Sample 82

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 82


E-MTAB-7016:Sample 87

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7016:Sample 87

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 87


E-MTAB-7016:Sample 88

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7016:Sample 88

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 88


E-MTAB-7016:Sample 89

text: public

characteristic: SRA accession

text: E-MTAB-7016:Sample 89

characteristic: Submitter Id

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 89


E-MTAB-7016:Sample 90

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7016:Sample 90

text: ArrayExpress

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

characteristic: organism

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 90


E-MTAB-7016:Sample 91

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7016:Sample 91

text: ArrayExpress

characteristic: broker name

text: nitrogen limited conditions

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 91


E-MTAB-7016:Sample 92

text: public

text: E-MTAB-7016:Sample 92

text: ArrayExpress

characteristic: description

text: nitrogen limited conditions

characteristic: environmental stress

text: wild type genotype

text: diurnal cycle 16:8h

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Tetradesmus obliquus

text: Sample 92


text: IDIBELL

text: public

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

characteristic: isolate

text: urethral exudate

characteristic: isolation source

characteristic: lat lon

text: Haemophilus parainfluenzae

text: Haemophilus parainfluenzae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IDIBELL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Spain

text: diseased

text: homo sapiens

text: vaginal exudate

text: Haemophilus parainfluenzae

text: Haemophilus parainfluenzae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IDIBELL

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Spain

text: diseased

text: homo sapiens

text: endocervical exudate

text: Haemophilus parainfluenzae

characteristic: organism

text: Haemophilus parainfluenzae


text: IDIBELL

text: public

characteristic: collection date

text: Spain

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homo sapiens

text: preputial exudate

text: Haemophilus parainfluenzae

text: Haemophilus parainfluenzae


text: UNIVERSITY OF BIRMINGHAM

text: public

tag: Namespace:UNIVERSITY OF BIRMINGHAM

text: Pseudomonas aeruginosa PAO1

characteristic: common name

text: Pseudomonas aeruginosa PAO1

text: Pseudomonas aeruginosa PAO1


text: UNIVERSITY OF MANCHESTER

text: public

tag: Namespace:UNIVERSITY OF MANCHESTER

text: 10 to 20

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: Mice were treated at ZT6 (6 hours after lights on, 1:30pm) or at ZT18 (6 hours after lights off, 1:30am) with dexamethasone (1 mg/kg intraperitoneal) or vehicle (methylcyclodextrin 1mg/kg intraperitoneal) for 2 hours before sacrifice by cervical dislocation. Liver sections from mouse were used for RNASeq study. Tophat-2.0.11 Liver tissue were lysed and total RNA prepared using SV Total RNA Isolation System (Promega). RNA quality was checked using the RNA 6000 Nano Assay, RNA samples with a 260:280 nM ratio of ~2 taken forward for analysis. Quality and integrity of total RNA samples were assessed using a 2100 Bioanalyzer or a 2200 TapeStation (Agilent Technologies) according to the manufacturer’s instructions. polyadenylated mRNA was purified using poly-Toligo-attached, magnetic beads. TruSeq® Stranded mRNA assay (Illumina, Inc.) according to the manufacturer’s protocol

characteristic: description

text: normal

characteristic: disease

text: Nr1d1 homozygous knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: Nr1d1 homozygous knockout

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


text: UNIVERSITY OF MANCHESTER

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 10 to 20

text: ArrayExpress

text: house mouse

characteristic: common name

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male


text: UNIVERSITY OF MANCHESTER

text: public

text: 10 to 20

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: JLU

text: public

text: Genome sequence of Pseudomonas wadenswilerensis CCOS 864T

text: Pseudomonas wadenswilerensis

text: Pseudomonas wadenswilerensis

text: CCOS 864

characteristic: strain

text: Pseudomonas wadenswilerensis CCOS 864T


text: Cell pellet

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: human

text: Homo sapiens

text: Cell pellet

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: UMCU

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

characteristic: common name

text: Reference cell line corresponding to the COLO829 melanoma cell line

text: Homo sapiens

text: Homo sapiens

text: COLO829 reference cell line

characteristic: title


characteristic: ENA-CHECKLIST

text: UMCU

text: public

text: human

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: COLO829 melanoma cell line


E-MTAB-7025:Sample 12

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7025:Sample 12

tag: Namespace:Center for Medical Genetics Gent Cancer Research Institute Gent

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

text: Protocols: Cell lines were harvested, centrifuged and stored at -80°C. Cells were grown in RPMI1640 medium supplemented with 10% tetra-cycline free foetal bovine serum, 2 mM L-Glutamine and 100 IU/ml penicillin/streptavidin at 37°C in a 5% CO2 humid atmosphere Cells were treated with JQ1, THZ1, the combination or left untreated and 10h later, cells were harvested. Total RNA was extracted using miRNeasy kit (Qiagen) according to manufacturer's instructions, including on-column DNase treatment, and concentration was determined with the Nanodrop (Thermo Scientific). 100 ng of RNA from cells was used to perform an Illumina sequencing library preparation using the QuantSeq 3' mRNA-Seq Library Prep Kit (Lexogen, Vienna, Austria) according to manufacturer's protocol. During library preparation 15 PCR cycles were used. Size distribution and quality was evaluated with a high sensitivity DNA ChIP on the bio-analyzer (Agilent) and qPCR quantification of the libraries using the Illumina Kapa Library quantification kit (Lightcycler 480 qPCR mix Kapa).

characteristic: description

text: neuroblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: nervous system

characteristic: organism part

text: Homo sapiens

text: Sample 12


E-MTAB-7025:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Center for Medical Genetics Gent Cancer Research Institute Gent

characteristic: INSDC center name

text: public

text: E-MTAB-7025:Sample 16

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 16


E-MTAB-7025:Sample 4

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7025:Sample 4

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 4


E-MTAB-7025:Sample 8

text: public

characteristic: SRA accession

text: E-MTAB-7025:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: neuroblast

text: human

characteristic: common name

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 8


E-MTAB-7025:Sample 10

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7025:Sample 10

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-7025:Sample 14

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7025:Sample 14

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 14


E-MTAB-7025:Sample 2

text: public

text: E-MTAB-7025:Sample 2

text: ArrayExpress

text: neuroblast

characteristic: cell type

text: human

characteristic: description

text: neuroblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 2


E-MTAB-7025:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7025:Sample 6

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

characteristic: organism part

text: Homo sapiens

text: Sample 6


E-MTAB-7025:Sample 11

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7025:Sample 11

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 11


E-MTAB-7025:Sample 15

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7025:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 15


E-MTAB-7025:Sample 3

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-7025:Sample 3

text: ArrayExpress

text: neuroblast

text: human

characteristic: common name

text: neuroblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 3


E-MTAB-7025:Sample 7

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7025:Sample 7

text: ArrayExpress

characteristic: broker name

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 7

characteristic: title


E-MTAB-7025:Sample 1

text: public

text: E-MTAB-7025:Sample 1

text: ArrayExpress

characteristic: cell line

text: neuroblast

characteristic: cell type

text: human

characteristic: description

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 1


E-MTAB-7025:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-7025:Sample 13

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 13


E-MTAB-7025:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-7025:Sample 5

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

characteristic: organism part

text: Homo sapiens

text: Sample 5


E-MTAB-7025:Sample 9

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7025:Sample 9

text: ArrayExpress

text: neuroblast

text: human

text: neuroblastoma

text: Homo sapiens

text: Homo sapiens

text: nervous system

text: Homo sapiens

text: Sample 9


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Division of Biology, Faculty of Science, University of Zagreb, Croatia

characteristic: Submitter Id

text: ArrayExpress

text: oocyte

text: house mouse

characteristic: common name

text: Protocols: Metaphase II-arrested eggs (MII eggs) were obtained from superovulated 3-week-old C57BL6/J and B6D2F1 female mice (SLC Japan, Shizuoka) that were first injected intraperitoneally with 5 IU of equine chorionic gonadotropin (eCG; ASKA Pharmaceutical Co., Tokyo) followed 48 h later with 5 IU of human chorionic gonadotropin (hCG; ASKA Pharmaceutical). MII eggs were collected from the ampullae of oviducts 15 h post-hCG injection and transferred to human tubal fluid medium (Lawitts & Biggers, 1993) supplemented with 10 mg/ml BSA (Sigma-Aldrich, Saint Louis, MO). The eggs derived from C57BL6/J and B6D2F1 mice were inseminated with spermatozoa obtained from the caudal epididymis of adult C57BL6/J and ICR mice (SLC Japan), respectively. The spermatozoa were incubated for 2 h in TYH medium (Toyoda Y, 1971) and human tubal fluid medium supplemented with 10 mg/ml BSA for the eggs from C57BL6/J and B6D2F1 female mice, respectively, in an atmosphere of 5% CO2/95% air at 38Â°C prior to use for insemination. Four to six hours after insemination, the eggs were washed and cultured in potassium simplex optimized medium (Quinn & Begley, 1984). PolyA RNA was isolated by using mRNA purification kit (Invitrogen, Carlsbad, CA; cat# 610.06) RNA quality analysis and size-selection (>200 tn) were performed on the Bioanalyzer RNA Pico Chip (Agilent Technologies, Santa Clara, CA). RNA-Seq libraries were constructed using the mRNA-Seq Sample Preparation Kit (Illumina, San Diego, CA)

text: oocyte GV

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Centre for Ecology, Evolution and Environmental Changes (cE3c)

characteristic: collected by

characteristic: collection date

text: Pool of RNA from brains of two Squalius alburnoides nuclear non-hybrid AA males raised in captivity, with Duplex-specific nuclease (DNS) cDNA normalization protocol

text: Adult

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: Guadiana River in Souther Portugal

characteristic: geographic location (region and locality)

text: Miguel P Machado

characteristic: identified by

text: Captivity

characteristic: isolation source

text: Squalius alburnoides

characteristic: organism

text: Squalius alburnoides

text: Male

characteristic: sex

text: Brain

characteristic: tissue type

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Centre for Ecology, Evolution and Environmental Changes (cE3c)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pool of RNA from testis of two Squalius alburnoides nuclear non-hybrid AA males raised in captivity, with Duplex-specific nuclease (DNS) cDNA normalization protocol

characteristic: description

text: Adult

text: Portugal

text: Guadiana River in Souther Portugal

text: Miguel P Machado

text: Captivity

text: Squalius alburnoides

text: Squalius alburnoides

text: Male

text: Testis


E-MTAB-7020:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-7020:Sample 11

tag: Namespace:Division of Informatics, Imaging and Data Sciences Faculty of Biology, Medicine, and Health University of Manchester, Manchester, UK

characteristic: Submitter Id

text: 10 to 20

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Experimentation was performed on mouse strains C57BL/6J (WT) from Harlan Blackthorn, UK. Mice were treated at 6 hours ZT6 (6 hours after lights on, 1:30pm) or at ZT18 (6 hours after lights off, 1:30am) with dexamethasone (1 mg/kg intraperitoneal) or vehicle (methylcyclodextrin 1mg/kg intraperitoneal) Lung and, liver were lysed and total RNA prepared using SV Total RNA Isolation System (Promega). Quality and integrity of total RNA samples were assessed by 2100 Bioanalyzer or a 2200 TapeStation (Agilent Technologies) according to the manufacturer’s instructions. RNA sequencing (RNA-seq) libraries were generated using the TruSeq® Stranded mRNA assay (Illumina, Inc.) according to the manufacturer’s protocol.

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: strain

text: Sample 11


E-MTAB-7020:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Division of Informatics, Imaging and Data Sciences Faculty of Biology, Medicine, and Health University of Manchester, Manchester, UK

text: public

text: E-MTAB-7020:Sample 12

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex

text: Sample 12

characteristic: title


E-MTAB-7020:Sample 15

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7020:Sample 15

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: Sample 15


E-MTAB-7020:Sample 16

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

text: E-MTAB-7020:Sample 16

characteristic: Submitter Id

text: 10 to 20

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: Sample 16


E-MTAB-7020:Sample 3

text: public

text: E-MTAB-7020:Sample 3

text: 10 to 20

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: male

text: Sample 3


E-MTAB-7020:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7020:Sample 4

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 4


E-MTAB-7020:Sample 7

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7020:Sample 7

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male

text: Sample 7

characteristic: title


E-MTAB-7020:Sample 8

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7020:Sample 8

characteristic: Submitter Id

text: 10 to 20

characteristic: age

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male

text: Sample 8


E-MTAB-7020:Sample 1

text: public

text: E-MTAB-7020:Sample 1

text: 10 to 20

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male

text: Sample 1


E-MTAB-7020:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7020:Sample 10

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: Sample 10


E-MTAB-7020:Sample 13

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7020:Sample 13

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: strain

text: Sample 13


E-MTAB-7020:Sample 14

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7020:Sample 14

characteristic: Submitter Id

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: Sample 14

characteristic: title


E-MTAB-7020:Sample 2

text: public

text: E-MTAB-7020:Sample 2

text: 10 to 20

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male

text: Sample 2


E-MTAB-7020:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7020:Sample 5

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: male

text: Sample 5


E-MTAB-7020:Sample 6

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7020:Sample 6

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: male

characteristic: sex

text: Sample 6


E-MTAB-7020:Sample 9

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7020:Sample 9

characteristic: Submitter Id

text: 10 to 20

text: ArrayExpress

text: house mouse

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: strain

text: Sample 9


text: public

tag: Namespace:LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

text: RNA of mixed chalcopyrite leaching culture inoculated with L.ferriphilum and S.thermosulfidooxidans, planktonic cell fraction

characteristic: description

text: mixed culture metagenome

text: mixed culture metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

text: public

text: mixed culture metagenome

text: mixed culture metagenome


characteristic: ENA-LAST-UPDATE

text: public

text: RNA of chalcopyrite leaching culture inoculated with L.ferriphilum, attached cells

text: Leptospirillum ferriphilum

text: Leptospirillum ferriphilum


text: public

text: RNA of mixed chalcopyrite leaching culture inoculated with L.ferriphilum and S.thermosulfidooxidans, attached cell fraction

text: mixed culture metagenome

text: mixed culture metagenome


text: ANSES

text: public

characteristic: collection date

text: Finland

characteristic: geographic location (country and/or sea)

text: not provided

characteristic: host health state

text: Canis familiaris

characteristic: host scientific name

text: NR

characteristic: isolate

text: Dog

characteristic: isolation source

text: Brucella canis

text: Brucella canis

text: Brucella canis genome


characteristic: External Id

text: WORKSHOP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: bakery food

characteristic: environment (biome)

text: bread dough

characteristic: environment (feature)

text: food

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: food metagenome

characteristic: organism

text: Cambridge dough

characteristic: project name

text: food metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: bread dough sample from Cambridge bakery


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:GUANGZHOU UNIVERSITY OF CHINESE MEDICINE

characteristic: Submitter Id

characteristic: collection date

text: China

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: mus musculus

characteristic: host scientific name

text: feces of mice

text: feces metagenome

text: feces metagenome

text: feces from mice under high temperature and humidity

characteristic: title


characteristic: External Id

text: GUANGZHOU UNIVERSITY OF CHINESE MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: China

text: healthy

text: mus musculus

characteristic: isolate

text: feces of mice

characteristic: isolation source

text: feces metagenome

text: feces metagenome


characteristic: ENA-CHECKLIST

text: public

text: China

text: diseased

text: mus musculus

text: feces of mice

text: feces metagenome

characteristic: organism

text: feces metagenome


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IGC

text: public

text: fruit fly

characteristic: common name

text: Control Population, 2 generations before removal of wolbachia, Replicate 1

characteristic: description

text: adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

characteristic: sex

text: whole body

characteristic: tissue type

text: Wol - Control - G-5 - Rep.1


text: IGC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: fruit fly

text: Control Population, 2 generations before removal of wolbachia, Replicate 2

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Control - G-5 - Rep.2


characteristic: External Id

text: IGC

characteristic: INSDC center name

text: public

text: fruit fly

text: Control Population, 2 generations before removal of wolbachia, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Control - G-5 - Rep.3

characteristic: title


text: IGC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: fruit fly

text: Control Population, 2 generations before removal of wolbachia, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Control - G-5 - Rep.4


characteristic: ENA-CHECKLIST

text: IGC

text: public

text: fruit fly

text: Virus Selected Population, 2 generations before removal of wolbachia, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Virus Selected - G-5 - Rep. 1


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, 2 generations before removal of wolbachia, Replicate 2

text: adult

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Virus Selected - G-5 - Rep. 2


characteristic: ENA-FIRST-PUBLIC

text: IGC

text: public

text: fruit fly

text: Virus Selected Population, 2 generations before removal of wolbachia, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Virus Selected - G-5 - Rep. 3


characteristic: ENA-LAST-UPDATE

text: IGC

text: public

text: fruit fly

text: Virus Selected Population, 2 generations before removal of wolbachia, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: Wol - Virus Selected - G-5 - Rep. 4


text: IGC

text: public

text: fruit fly

characteristic: common name

text: Control Population, after removal of wolbachia, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G0 - Rep.1


text: IGC

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, Replicate 2

characteristic: description

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G0 - Rep.2


text: IGC

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, Replicate 3

text: adult

characteristic: dev stage

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G0 - Rep.3


text: IGC

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

characteristic: sex

text: whole body

text: NoWol - Control - G0 - Rep.4


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

characteristic: tissue type

text: NoWol - Virus Selected - G0 - Rep. 1


text: IGC

text: public

characteristic: INSDC status

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, Replicate 2

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G0 - Rep. 2


text: IGC

text: public

characteristic: SRA accession

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G0 - Rep. 3


text: IGC

text: public

characteristic: Submitter Id

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G0 - Rep. 4


characteristic: External Id

text: IGC

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, 20 generations, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G20 - Rep.1


text: IGC

characteristic: INSDC center name

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, 20 generations, Replicate 2

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G20 - Rep.2


text: IGC

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, 20 generations, Replicate 3

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G20 - Rep.3

characteristic: title


text: IGC

characteristic: INSDC first public

text: public

text: fruit fly

text: Control Population, after removal of wolbachia, 20 generations, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Control - G20 - Rep.4


text: IGC

characteristic: INSDC last update

text: public

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, after 20 generations of DCV selection, Replicate 1

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G20 - Rep. 1


characteristic: ENA-CHECKLIST

text: IGC

text: public

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, after 20 generations of DCV selection, Replicate 2

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G20 - Rep. 2


text: IGC

text: public

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, after 20 generations of DCV selection, Replicate 3

text: adult

text: Drosophila melanogaster

characteristic: organism

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G20 - Rep. 3


characteristic: ENA-FIRST-PUBLIC

text: IGC

text: public

text: fruit fly

text: Virus Selected Population, after removal of wolbachia, after 20 generations of DCV selection, Replicate 4

text: adult

text: Drosophila melanogaster

text: Drosophila melanogaster

text: M+F

text: whole body

text: NoWol - Virus Selected - G20 - Rep. 4


characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Univ. Grenoble Alpes, CNRS, CEA, INRA, BIG-LPCV, 38000 Grenoble, France

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Protocols: 14 day-old seedlings grown on MS plates were shortly immersed with a solution containing 0.03% L-77 Silwett, 1/10 000 DMSO (mock) or 10 µM DEX (DEX). Whole seedlings were harvested 4 h after treatment and immediately flash-frozen in liquid nitrogen. Seedlings were grown for 14 days of 1/2MS-Agar plates with 10% in long-days conditions. RNA was extracted with the RNAeasy kit (Qiagen) and DNA was removed with the TURBO DNA-free kit (Ambion) according to manufacturers' instructions. Libraries were synthesized with the TruSeq Stranded kit (Illumina) according to manufacturer's instructions. Library preparation was performed at the POPS plateform (IPS2, Paris-Saclay).

text: seedling development stage

characteristic: developmental stage

text: Columbia

characteristic: ecotype

text: mCherry-GR

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana


text: Univ. Grenoble Alpes, CNRS, CEA, INRA, BIG-LPCV, 38000 Grenoble, France

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: thale cress

characteristic: common name

characteristic: description

text: seedling development stage

text: Columbia

text: mCherry-GR

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana


characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: seedling development stage

text: Columbia

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

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text: public

tag: Namespace:UNIVERSITY OF ZUERICH

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

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text: Replicate 2 fungi

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text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

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text: soil

text: root

text: Arabidopsis thaliana

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

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characteristic: Submitter Id

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text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

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text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

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text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UNIVERSITY OF ZUERICH

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text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Hsm

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

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text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Petergof

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 1 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Lund

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

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text: thale cress

characteristic: common name

text: Replicate 1 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vastervik

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 2 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Petergof

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 1 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Koln

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 1 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vinslov

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Kondara

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 1 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Hod

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 1 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Co

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Kent

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 1 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Sorbo

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 1 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Duk

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 2 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 2 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Duk

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 2 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vastervik

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 2 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Sorbo

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 2 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Hsm

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 2 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vinslov

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 2 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Hod

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 1 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vimmerby

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Algutsrum

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 2 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Co

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 2 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Algutsrum

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 3 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 3 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Algutsrum

characteristic: subspecific genetic lineage name

text: ecotype

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 4 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Algutsrum

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 4 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 3 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Duk

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 4 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Duk

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 2 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 3 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Hod

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 3 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Hsm

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 4 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Hsm

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 2 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Kent

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 3 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Kent

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 2 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Koln

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 3 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Koln

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 2 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Kondara

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 3 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Kondara

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 1 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Liarum

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 2 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Liarum

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 3 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 4 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 1 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Lisse

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 2 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Lund

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 3 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Lund

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 2 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 5 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 3 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Petergof

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 4 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Petergof

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 1 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Shahdara

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 3 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Sorbo

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 3 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vastervik

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 4 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Vastervik

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 2 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vimmerby

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 3 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vimmerby

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 3 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

text: Vinslov

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 4 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: Vinslov

text: ecotype


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ZUERICH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: collection date

text: thale cress

text: Replicate 3 fungi

text: USA

characteristic: geographic location (country and/or sea)

text: 42.0831 N

characteristic: geographic location (latitude)

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype

characteristic: title


text: UNIVERSITY OF ZUERICH

text: public

text: thale cress

text: Replicate 4 fungi

text: USA

text: 42.0831 N

text: 86.351 W

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

text: Arabidopsis thaliana

characteristic: organism

text: > 5 months

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: root

characteristic: plant structure

text: Arabidopsis thaliana

characteristic: subspecific genetic lineage name

text: ecotype

characteristic: subspecific genetic lineage rank


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF ZUERICH

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: thale cress

characteristic: common name

text: Replicate 1 fungi

characteristic: description

text: USA

text: 42.0831 N

text: 86.351 W

text: Arabidopsis thaliana

text: > 5 months

text: soil

text: root

text: Arabidopsis thaliana

text: ecotype


characteristic: ENA-CHECKLIST

text: Institute of tropical medicine

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:Institute of tropical medicine

characteristic: Submitter Id

characteristic: collection date

text: Mycobacterium tuberculosis

text: MTB isolate cultured from sputum sample

text: Democratic Republic of the Congo

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapien

characteristic: host scientific name

text: Mycobacterium tuberculosis

characteristic: isolate

text: Sputum

characteristic: isolation source

text: 4.4419° S, 15.2663° E

characteristic: lat lon

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

characteristic: title


text: Bacteria

characteristic: ArrayExpress-CellType

text: RiboZero treatment

characteristic: ArrayExpress-Immunoprecipitate

text: intestinal content

characteristic: ArrayExpress-OrganismPart

text: Bifidobacterium breve UCC2003

characteristic: ArrayExpress-Species

text: Bifidobacterium breve UCC2003

characteristic: ArrayExpress-StrainOrLine

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: organism

text: bacterial RNA extracted from large intestinal content of SPF C57/BL6 mice

characteristic: sample description

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: strain


text: Bacteria

text: RiboZero treatment

characteristic: ArrayExpress-IMMUNOPRECIPITATE

text: intestinal content

text: Bifidobacterium breve UCC2003

characteristic: ArrayExpress-SPECIES

text: Bifidobacterium breve UCC2003

characteristic: ENA-CHECKLIST

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Bifidobacterium breve UCC2003

characteristic: common name

text: Bifidobacterium breve UCC2003

text: Bifidobacterium breve UCC2003

characteristic: subject id

text: Bifidobacterium breve UCC2003


text: Lactobacillus paracasei

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Lactobacillus paracasei

text: Lactobacillus paracasei

text: Lactobacillus paracasei

characteristic: title


E-MTAB-7030:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ruđer Boskovic Institute

text: public

text: E-MTAB-7030:Sample 11

tag: Namespace:Ruđer Boskovic Institute

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primary tumor

characteristic: clinical history

text: HPV DNA and RNA positive (unspliced)

characteristic: clinical information

text: O+

characteristic: cohort

text: human

text: Protocols: Samples were obtained during surgical treatment of HNSCC patients. Tissue was cut into 2 small pieces, one deposited in 700 microliters of G2 buffer compatible with EZ1 DNA isolation on Qiagen EZ1 biorobot, and the other in 700 microliters of RNAlater solution. Tumor grading was scored by collaborating pathologists. Tumor tissue was further cut to approx 20mg pieces. The DNA was isolated with the EZ1 Biorobot using EZ1 DNA tissue kit (Qiagen) following the manufacturer’s protocol. The total RNA was isolated using miRNeasy mini kit (Qiagen) following the manufacturer’s protocol. Both DNA and RNA quality and quantity were analyzed on nanospectrofotometer (Implen). Furthermore, RNA quality was assessed by Agilent Bioanalyser RNA6000 Nano kit to determine RIN number. NGS libraries were constructed with Illumina TrueSeq Small RNA Library prep kit according to the manufacturer’s protocol. For multiplexing and library pooling, index pools A (1-12) and B (13-22) were used. Agilent Bioanalyser was used for quality control of indicated steps as recommended by the manufacturer. QBit was used to quantify final libraries before normalization and pooling.

characteristic: description

text: head and neck squamous cell carcinoma

characteristic: disease

characteristic: disease staging

text: non-smoker; non-alcohol drinking

characteristic: environmental history

text: well differentiated histopathology evaluation

characteristic: histology

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

text: Homo sapiens

text: tongue

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 11


E-MTAB-7030:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Ruđer Boskovic Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7030:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: primary tumor

text: HPV negative

text: OP-

text: human

characteristic: common name

text: head and neck squamous cell carcinoma

text: smoker

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tongue

text: neoplasm

text: Homo sapiens

text: female

text: Sample 10

characteristic: title


E-MTAB-7030:Sample 13

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ruđer Boskovic Institute

text: public

text: E-MTAB-7030:Sample 13

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primary tumor

characteristic: clinical history

text: HPV negative

characteristic: clinical information

text: O-

characteristic: cohort

text: human

characteristic: description

text: head and neck squamous cell carcinoma

characteristic: disease

characteristic: disease staging

text: smoker; alcohol drinking

characteristic: environmental history

text: Homo sapiens

text: Homo sapiens

text: mouth floor

text: neoplasm

text: Homo sapiens

text: male

text: Sample 13


E-MTAB-7030:Sample 9

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Ruđer Boskovic Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-7030:Sample 9

text: ArrayExpress

text: recidive

text: HPV negative

text: O-

text: human

text: head and neck squamous cell carcinoma

text: smoker; alcohol drinking

characteristic: histology

text: Homo sapiens

text: Homo sapiens

text: mouth floor

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Sample 9


E-MTAB-7030:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Ruđer Boskovic Institute

text: public

characteristic: SRA accession

text: E-MTAB-7030:Sample 20

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primary tumor

characteristic: clinical history

text: HPV DNA and RNA positive (spliced)

text: OP+

text: human

characteristic: common name

text: head and neck squamous cell carcinoma

text: non-smoker; non-alcohol drinking

text: moderately differentiated histopathology evaluation

text: Human papillomavirus

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: tonsil

text: neoplasm

text: Homo sapiens

text: male

text: Sample 20

characteristic: title