E-MTAB-7126:Sample 5

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7126:Sample 5

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 5


E-MTAB-7126:Sample 6

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7126:Sample 6

tag: Namespace:Harvard University Department of Chemistry and Chemical Biology

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Following compound treatment, cells were washed with PBS, and directly lysed in dishes with Ribozol reagent Direct-zol RNA purification kit (Zymo Research) Illumina TruSeq RNA Library Prep Kit v2

characteristic: description

text: malignant melanoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

text: Homo sapiens

text: Sample 6

characteristic: title


E-MTAB-7126:Sample 7

text: Harvard University Department of Chemistry and Chemical Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7126:Sample 7

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 7


E-MTAB-7126:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-7126:Sample 8

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 8


E-MTAB-7126:Sample 9

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7126:Sample 9

text: ArrayExpress

text: epithelial cell

text: human

text: malignant melanoma

text: Homo sapiens

text: Homo sapiens

text: skin

text: Homo sapiens

text: Sample 9


text: public

tag: Namespace:THE ROSLIN INSTITUTE AND ROYAL (DICK) SCHOOL OF VETERINARY STUDIES

characteristic: Submitter Id

text: dog

text: Whole genome sequence data for Border Collie from buccal swab on Illumina X10 at 30X

text: Canis lupus familiaris

text: Canis lupus familiaris

text: WGS Border Collie 30X from buccal swab


text: THE ROSLIN INSTITUTE AND ROYAL (DICK) SCHOOL OF VETERINARY STUDIES

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: WGS Border Collie 30X from buccal swab


text: public

tag: Namespace:Flicek research group European Molecular Biology Laboratory - European Bioinformatics Institute

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: white-tufted-ear marmoset

text: Protocols: Fresh primary tissues were immediately fixed with 1% formaldehyde, flash frozen, and stored at -80 C until use. ChIP-seq ThruPLEX DNA-seq kit

text: adult

characteristic: developmental stage

characteristic: individual

text: Callithrix jacchus

text: Callithrix jacchus

text: brain

characteristic: replicate

text: Callithrix jacchus

text: female

characteristic: sex

text: not available

characteristic: strain


text: Flicek research group European Molecular Biology Laboratory - European Bioinformatics Institute

characteristic: INSDC center name

text: public

text: ArrayExpress

text: white-tufted-ear marmoset

characteristic: common name

characteristic: description

text: adult

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: muscle tissue

characteristic: organism part

text: Callithrix jacchus

text: male

text: not available

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: white-tufted-ear marmoset

text: adult

text: Callithrix jacchus

text: Callithrix jacchus

text: brain

text: Callithrix jacchus

text: male

text: not available


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: white-tufted-ear marmoset

text: adult

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: brain

text: Callithrix jacchus

text: female

text: not available


characteristic: INSDC center name

text: public

text: ArrayExpress

text: white-tufted-ear marmoset

characteristic: common name

text: adult

characteristic: individual

text: Callithrix jacchus

text: Callithrix jacchus

text: liver

characteristic: replicate

text: Callithrix jacchus

text: female

characteristic: sex

text: not available

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: white-tufted-ear marmoset

characteristic: description

text: adult

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: testis

characteristic: organism part

text: Callithrix jacchus

text: male

text: not available

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not available

text: ArrayExpress

text: white-tufted-ear marmoset

text: adult

text: Callithrix jacchus

text: Callithrix jacchus

text: testis

text: Callithrix jacchus

text: male

text: not available


characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: not available

characteristic: age

text: ArrayExpress

characteristic: broker name

text: white-tufted-ear marmoset

characteristic: common name

text: adult

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: liver

text: Callithrix jacchus

text: male

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: not available

text: ArrayExpress

text: white-tufted-ear marmoset

text: adult

characteristic: individual

text: Callithrix jacchus

text: Callithrix jacchus

text: muscle tissue

characteristic: replicate

text: Callithrix jacchus

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: dog

characteristic: description

text: adult

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: liver

characteristic: organism part

text: Canis lupus familiaris

text: male

text: Beagle

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: dog

text: adult

text: Canis lupus familiaris

text: Canis lupus familiaris

text: testis

text: Canis lupus familiaris

text: male

text: Beagle


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: dog

characteristic: common name

text: adult

characteristic: developmental stage

text: Canis lupus familiaris

text: Canis lupus familiaris

text: muscle tissue

text: Canis lupus familiaris

text: male

text: Beagle


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: dog

text: adult

characteristic: individual

text: Canis lupus familiaris

text: Canis lupus familiaris

text: brain

characteristic: replicate

text: Canis lupus familiaris

text: male

characteristic: sex

text: Beagle

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: horse

characteristic: description

text: adult

text: Equus caballus

characteristic: organism

text: Equus caballus

text: testis

characteristic: organism part

text: Equus caballus

text: male

text: Welsh Mountain Pony

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: horse

text: adult

text: Equus caballus

text: Equus caballus

text: liver

text: Equus caballus

text: male

text: Welsh Mountain Pony


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: horse

characteristic: common name

text: adult

characteristic: developmental stage

text: Equus caballus

text: Equus caballus

text: brain

text: Equus caballus

text: male

text: Welsh Mountain Pony


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: horse

text: adult

characteristic: individual

text: Equus caballus

text: Equus caballus

text: muscle tissue

characteristic: replicate

text: Equus caballus

text: male

characteristic: sex

text: Welsh Mountain Pony

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: domestic cat

characteristic: description

text: adult

text: Felis catus

characteristic: organism

text: Felis catus

text: liver

characteristic: organism part

text: Felis catus

text: male

text: not available

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: domestic cat

text: adult

text: Felis catus

text: Felis catus

text: muscle tissue

text: Felis catus

text: male

text: not available


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: domestic cat

characteristic: common name

text: adult

characteristic: developmental stage

text: Felis catus

text: Felis catus

text: brain

text: Felis catus

text: male

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: domestic cat

text: adult

characteristic: individual

text: Felis catus

text: Felis catus

text: testis

characteristic: replicate

text: Felis catus

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: domestic cat

characteristic: description

text: adult

text: Felis catus

characteristic: organism

text: Felis catus

text: muscle tissue

characteristic: organism part

text: Felis catus

text: female

text: not available

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: domestic cat

text: adult

text: Felis catus

text: Felis catus

text: liver

text: Felis catus

text: female

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: domestic cat

characteristic: common name

text: adult

characteristic: developmental stage

text: Felis catus

text: Felis catus

text: brain

text: Felis catus

text: female

text: not available


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Seede

characteristic: individual

text: Macaca mulatta

text: Macaca mulatta

text: liver

characteristic: replicate

text: Macaca mulatta

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Rhesus monkey

characteristic: description

text: adult

text: Simo

text: Macaca mulatta

characteristic: organism

text: Macaca mulatta

text: liver

characteristic: organism part

text: Macaca mulatta

text: male

text: not available

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Simo

text: Macaca mulatta

text: Macaca mulatta

text: brain

text: Macaca mulatta

text: male

text: not available


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Rhesus monkey

characteristic: common name

text: adult

characteristic: developmental stage

text: Simo

text: Macaca mulatta

text: Macaca mulatta

text: muscle tissue

text: Macaca mulatta

text: male

text: not available


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Simo

characteristic: individual

text: Macaca mulatta

text: Macaca mulatta

text: testis

characteristic: replicate

text: Macaca mulatta

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: Rhesus monkey

characteristic: description

text: adult

text: Jeremy

text: Macaca mulatta

characteristic: organism

text: Macaca mulatta

text: muscle tissue

characteristic: organism part

text: Macaca mulatta

text: male

text: not available

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Jeremy

text: Macaca mulatta

text: Macaca mulatta

text: testis

text: Macaca mulatta

text: male

text: not available


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Rhesus monkey

characteristic: common name

text: adult

characteristic: developmental stage

text: Dean

text: Macaca mulatta

text: Macaca mulatta

text: muscle tissue

text: Macaca mulatta

text: male

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Dean

characteristic: individual

text: Macaca mulatta

text: Macaca mulatta

text: liver

characteristic: replicate

text: Macaca mulatta

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: Rhesus monkey

characteristic: description

text: adult

text: Dean

text: Macaca mulatta

characteristic: organism

text: Macaca mulatta

text: testis

characteristic: organism part

text: Macaca mulatta

text: male

text: not available

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Rhesus monkey

text: adult

text: Dean

text: Macaca mulatta

text: Macaca mulatta

text: brain

text: Macaca mulatta

text: male

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Rhesus monkey

characteristic: common name

text: adult

characteristic: developmental stage

text: Don

text: Macaca mulatta

text: Macaca mulatta

text: brain

text: Macaca mulatta

text: male

text: not available


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: gray short-tailed opossum

text: adult

characteristic: individual

text: Monodelphis domestica

text: Monodelphis domestica

text: muscle tissue

characteristic: replicate

text: Monodelphis domestica

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: gray short-tailed opossum

characteristic: description

text: adult

text: Monodelphis domestica

characteristic: organism

text: Monodelphis domestica

text: testis

characteristic: organism part

text: Monodelphis domestica

text: male

text: not available

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: gray short-tailed opossum

text: adult

text: Monodelphis domestica

text: Monodelphis domestica

text: liver

text: Monodelphis domestica

text: male

text: not available


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: gray short-tailed opossum

characteristic: common name

text: adult

characteristic: developmental stage

text: Monodelphis domestica

text: Monodelphis domestica

text: brain

text: Monodelphis domestica

text: male

text: not available


characteristic: INSDC center name

characteristic: INSDC first public

text: public

unit: week

text: ArrayExpress

text: house mouse

text: adult

characteristic: individual

text: Mus musculus

text: Mus musculus

text: liver

characteristic: replicate

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: muscle tissue

characteristic: organism part

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: adult

text: Mus musculus

text: Mus musculus

text: brain

text: Mus musculus

text: male


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: house mouse

text: adult

characteristic: individual

text: Mus musculus

text: Mus musculus

text: brain

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: rabbit

characteristic: description

text: adult

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: liver

characteristic: organism part

text: Oryctolagus cuniculus

text: male

text: not available

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: rabbit

text: adult

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: testis

text: Oryctolagus cuniculus

text: male

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: rabbit

characteristic: common name

text: adult

characteristic: developmental stage

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: brain

text: Oryctolagus cuniculus

text: male

text: not available


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

unit: month

text: ArrayExpress

text: rabbit

text: adult

characteristic: individual

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: muscle tissue

characteristic: replicate

text: Oryctolagus cuniculus

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: rabbit

characteristic: description

text: adult

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: liver

characteristic: organism part

text: Oryctolagus cuniculus

text: male

text: not available

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: rabbit

text: adult

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: brain

text: Oryctolagus cuniculus

text: male

text: not available


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: rabbit

characteristic: common name

text: adult

characteristic: developmental stage

text: Oryctolagus cuniculus

text: Oryctolagus cuniculus

text: testis

text: Oryctolagus cuniculus

text: male

text: not available


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: Norway rat

text: adult

characteristic: individual

text: Rattus norvegicus

text: Rattus norvegicus

text: liver

characteristic: replicate

text: Rattus norvegicus

text: male

characteristic: sex

text: Brown Norway

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: Norway rat

characteristic: description

text: adult

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: testis

characteristic: organism part

text: Rattus norvegicus

text: male

text: Brown Norway

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

text: adult

text: Rattus norvegicus

text: Rattus norvegicus

text: muscle tissue

text: Rattus norvegicus

text: male

text: Brown Norway


characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: common name

text: adult

characteristic: developmental stage

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

text: Rattus norvegicus

text: male

text: Brown Norway


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: pig

text: adult

characteristic: individual

text: Sus scrofa

text: Sus scrofa

text: brain

characteristic: replicate

text: Sus scrofa

text: male

characteristic: sex

text: not available

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: pig

characteristic: description

text: adult

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: testis

characteristic: organism part

text: Sus scrofa

text: male

text: not available

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: pig

text: adult

text: Sus scrofa

text: Sus scrofa

text: liver

text: Sus scrofa

text: male

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: pig

characteristic: common name

text: adult

characteristic: developmental stage

text: Sus scrofa

text: Sus scrofa

text: muscle tissue

text: Sus scrofa

text: male

text: not available


E-MTAB-7122:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EPFL

text: public

text: E-MTAB-7122:Sample 1

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: Chromatin from human GM12878 cells was immunoprecipitated by FloChIP technique - a novel microfluidic immunoprecipitation system, the details of which will be published in due course - using the following Abcam antibodies: H3k27ac (ab47290; H3k4me3 (ab8580), H3k4me1 (ab8895), H3k9me3 (ab8898), H3k27me3 (ab6147) FloChIP technique - a novel microfluidic immunoprecipitation system, the details of which will be published in due course Tagmentation: Tn5 Produced-In-House, Amplification: NebNext NEB; Amplification: Primers IDT; Purification: AmpureBeads (BeckmanCoulter)

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Sample 1


E-MTAB-7122:Sample 2

text: EPFL

text: public

text: E-MTAB-7122:Sample 2

text: ArrayExpress

text: human

characteristic: description

text: adult

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 2

characteristic: title


E-MTAB-7122:Sample 3

text: EPFL

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-7122:Sample 3

text: ArrayExpress

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 3


E-MTAB-7122:Sample 4

text: EPFL

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-7122:Sample 4

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 4


E-MTAB-7122:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: EPFL

text: public

text: E-MTAB-7122:Sample 5

text: ArrayExpress

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

text: Sample 5


text: IBE(CSIC-UNIVERSITAT POMPEU FABRA)

text: public

text: lymphoblastoid cell line

characteristic: cell type

text: human

characteristic: common name

text: Homo sapiens

text: Homo sapiens

text: Male

text: HG02982 LCL from the 1000 genomes project with A0 Y haplogroup


characteristic: ENA-LAST-UPDATE

text: CGR

text: public

text: Calicophoron daubneyi

text: Calicophoron daubneyi


characteristic: External Id

text: NYU SCHOOL OF MEDICINE

text: public

tag: Namespace:NYU SCHOOL OF MEDICINE

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: The dams and their litters were randomly assigned to control or PAT groups. At postnatal (P) day 23, the pups were weaned and housed to separate males and females. All mice received acidified drinking water supplied by the facility routinely except for the periods when some litters were receiving antibiotic treatment. A therapeutic dose of the macrolide tylosin tartrate (Sigma-Aldrich, Billerica MA) was given to mice in their non-acidified drinking water with 333 mg/L (about 50 mg/kg body weight/day) on P5-10 for 1PAT mice or in three courses (P10-15, P28-31, and P37-40) (3PAT), exactly as described in (Livanos et al., 2016). Tylosin tartrate was dissolved in non-acidified water at a concentration of 333 mg/L. Control mice received non-acidified water, and PAT1 groups received one tylosin course at day 5 of life for 5 days. No cell cultures were used. RNA was extract from whole ileal tissue. RNA was extracted using the Qiagen miRNAeasy kit (Qiagen, Valencia CA) using the standard protocol. Ribosomal RNA was removed using the Ribo-Zero rRNA depletion kit (Illumina, San Diego CA). The TruSeq RNA sample preparation kit (Illumina, San Diego, CA) was used to prepare cDNA libraries from RNA samples.

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: ileum

characteristic: organism part

text: Mus musculus

text: male

text: NOD/ShiLtJ

characteristic: strain


text: NYU SCHOOL OF MEDICINE

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ileum

text: Mus musculus

text: female

characteristic: sex

text: NOD/ShiLtJ

characteristic: title


text: UNIBE-IG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: dog

text: Curly Coated Retriever

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Curly Coated Retriever


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:INSTITUTE FOR MOLECULAR BIOLOGY AND TUMOR RESEARCH

text: ArrayExpress

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: cell culture, see growth and nucleic acid extraction protocol. Antibodies used: Anti-Pbx1 (Cell Signaling Technology, Danvers, USA, Cat. No. #4342); Anti-Prep1 (Santa Cruz, Dallas, USA, Cat. No. sc-25282); antiSp2 Ab1 (produced in-house) MEFs were cultured in a 1:1 mixture of Dulbecco’s modified eagle medium (DMEM)/high glucose (4.5 g/L) (Gibco Thermo Fisher Scientific, Waltham, USA) and HAM’s F-10 (Gibco Thermo Fisher Scientific, Waltham, USA) supplemented with 10% (v/v) fetal calf serum (Sigma-Aldrich, St. Louis, USA) and 1% Penicillin-Streptomycin. Sp2ko MEFs expressing Sp2 mutants were selected and propagated in the presence of 2 µg/mL puromycin. Conventional ChIPs of Pbx1, Prep1 and Flag-Sp2 were performed using the One Day ChIP kit (Diagenode, Seraing, Belgium). Three microgram of antibody were used per ChIP experiment, and five nanogram of precipitated DNA were used for indexed sequencing library preparation using the Microplex library preparation kit v2 (Diagenode). Microplex library preparation kit

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: Sp2 homozygous knockout

text: Mus musculus

text: Mus musculus

text: embryo

text: Mus musculus


characteristic: External Id

text: INSTITUTE FOR MOLECULAR BIOLOGY AND TUMOR RESEARCH

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: broker name

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo

text: normal

text: Sp2 homozygous knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: embryo

characteristic: organism part

text: Mus musculus


characteristic: INSDC first public

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: Protocols: cell culture, see growth and nucleic acid extraction protocol. Antibodies used: Anti-Pbx1 (Cell Signaling Technology, Danvers, USA, Cat. No. #4342); Anti-Prep1 (Santa Cruz, Dallas, USA, Cat. No. sc-25282); antiSp2 Ab1 (produced in-house) MEFs were cultured in a 1:1 mixture of Dulbecco’s modified eagle medium (DMEM)/high glucose (4.5 g/L) (Gibco Thermo Fisher Scientific, Waltham, USA) and HAM’s F-10 (Gibco Thermo Fisher Scientific, Waltham, USA) supplemented with 10% (v/v) fetal calf serum (Sigma-Aldrich, St. Louis, USA) and 1% Penicillin-Streptomycin. Sp2ko MEFs expressing Sp2 mutants were selected and propagated in the presence of 2 µg/mL puromycin. For ChIP-exo analysis we used the ChIP-exo kit from Active Motif (Carlsbad, CA) in accordance with the manufacturer´s instructions. Cross-linked chromatin was generated from 2x107 wild type and Sp2ko MEFs. Three individual ChIP reactions with 500 microgram of sheared chromatin were performed for each cell type. Six microgram of affinity-purified homemade Sp2 antibody #1 were used per ChIP experiment. Enzymatic reactions and DNA purification steps were performed as described in the ChIP-exo kit manual. After PCR amplification, reactions were pooled and purified with AMPure magnetic beads (Beckman Coulter, Brea, CA). The DNA library was size selected by agarose gel electrophoresis (size range 180-350 bp) and extracted DNA fragments were purified with QIAquick columns (Qiagen, Hilden, Germany). Acitve Motif ChIP-exo kit

characteristic: description

text: embryo

text: normal

text: Sp2 homozygous knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: embryo

text: Mus musculus

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

text: embryo

text: normal

text: Sp2 homozygous knockout; Sp2-FLAG

text: Mus musculus

text: Mus musculus

text: embryo

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

characteristic: cell type

text: house mouse

text: embryo

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: embryo

text: Mus musculus


characteristic: External Id

text: public

text: ArrayExpress

text: mouse embryonic fibroblast cell

text: house mouse

characteristic: common name

text: embryo

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: embryo

text: Mus musculus


Escherichia coli strain str. 12536

characteristic: INSDC center name

text: public

text: Escherichia coli strain str. 12536

tag: Namespace:Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro

text: Escherichia coli

text: Escherichia coli


text: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro

characteristic: INSDC first public

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. 1639


text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli str. 7215


text: public

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


Klebsiella pneumoniae str. 9801

text: public

text: Klebsiella pneumoniae str. 9801

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae str. 980


text: MHH

text: public

characteristic: collection date

characteristic: description

text: human

characteristic: environment (biome)

text: lung

characteristic: environment (feature)

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: project name

text: metagenome

text: ABI-solid

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MHH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: lung

text: sputum

text: Germany

text: host-associated

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: ABI-solid

characteristic: title


text: MHH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

characteristic: description

text: human

characteristic: environment (biome)

text: lung

characteristic: environment (feature)

text: sputum

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: metagenome

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: ST JUDE CHILDREN'S RESEARCH HOSPITAL

text: public

tag: Namespace:ST JUDE CHILDREN'S RESEARCH HOSPITAL

text: house mouse

characteristic: common name

text: Mouse cerebella sample, part of a cerebellum development study using single cell transcript counting.

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: AALBORG UNIVERSITY

characteristic: INSDC last update

text: public

tag: Namespace:AALBORG UNIVERSITY

text: Fish farm water sample

characteristic: location

text: metagenome

text: A

characteristic: rep

text: metagenome


text: AALBORG UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Fish farm water sample

text: metagenome

characteristic: organism

text: B

text: metagenome

characteristic: title


text: AALBORG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Fish farm water sample

characteristic: description

text: metagenome

text: C

text: metagenome


text: LIMNOLOGICAL INSTITUTE SB RAS

text: public

tag: Namespace:LIMNOLOGICAL INSTITUTE SB RAS

characteristic: collection date

text: Sponge, healthy in appearance

text: sponge metagenome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

text: 51º 90´ 69 N ´

characteristic: geographic location (latitude)

text: 105º 07´ 05 E´´

characteristic: geographic location (longitude)

text: Lake Baikal

characteristic: geographic location (region and locality)

text: Lubomirskia baikalensis

characteristic: host common name

text: healthy

characteristic: host disease status

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: freshwater metagenome

text: disease-associated holobiont of Lubomirskia baicalensis sponges

characteristic: project name

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

unit: ºC

characteristic: temperature


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LIMNOLOGICAL INSTITUTE SB RAS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: diseased part of sponge

characteristic: description

text: sponge metagenome

text: lake

text: water

text: Russia

text: 51º 90´ 69 N ´

text: 105º 07´ 05 E´´

text: Lake Baikal

text: Lubomirskia baikalensis

text: diseased

text: host-associated

text: metagenome

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: Illumina

characteristic: title


text: LIMNOLOGICAL INSTITUTE SB RAS

text: public

text: rotten tissues of dead sponge

text: sponge metagenome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 51º 90´ 69 N ´

characteristic: geographic location (latitude)

text: 105º 07´ 05 E´´

characteristic: geographic location (longitude)

text: Lake Baikal

characteristic: geographic location (region and locality)

text: Lubomirskia baikalensis

characteristic: host common name

text: dead

characteristic: host disease status

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: freshwater metagenome

characteristic: project name

text: freshwater metagenome

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LIMNOLOGICAL INSTITUTE SB RAS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: sponge, healty appearance

characteristic: description

text: sponge metagenome

text: lake

text: water

text: Russia

text: 51º 90´ 69 N ´

text: 105º 07´ 05 E´´

text: Lake Baikal

text: Lubomirskia baikalensis

text: healthy

text: host-associated

text: metatranscriptome

text: freshwater metagenome

text: freshwater metagenome

text: Illumina

characteristic: sequencing method

characteristic: temperature


text: LIMNOLOGICAL INSTITUTE SB RAS

text: public

text: tissues of diseased sponge

text: sponge metagenome

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Russia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

text: 51º 90´ 69 N ´

characteristic: geographic location (latitude)

text: 105º 07´ 05 E´´

characteristic: geographic location (longitude)

text: Lake Baikal

characteristic: geographic location (region and locality)

text: Lubomirskia baikalensis

characteristic: host common name

text: diseased

characteristic: host disease status

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metatranscriptome

text: freshwater metagenome

characteristic: organism

text: freshwater metagenome

text: Illumina

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF SYDNEY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF SYDNEY

characteristic: Submitter Id

text: dog

characteristic: common name

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Australian Kelpie


text: UNIVERSITY OF SYDNEY

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Labrador


text: UNIVERSITY OF SYDNEY

text: public

text: dingo

text: Canis lupus dingo

text: Canis lupus dingo

text: Australian Dingo


text: UNIVERSITY OF SZEGED

text: public

tag: Namespace:UNIVERSITY OF SZEGED

text: Chlorocebus sabaeus

text: Chlorocebus sabaeus


characteristic: ENA checklist

text: University Hospital Galway

text: public

text: sam_1c96eabc-5ba9-4785-8bb4-b62bc64a6574

tag: Namespace:University Hospital Galway

text: University Hospital Galway

characteristic: collected by

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Typhi


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: sam_dca5e993-3e21-4394-a9f9-0fca4c290b5a

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: organism

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

text: public

text: sam_c83acfb2-b811-4f7f-80a9-1fc8e6b63453

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Enteritidis


text: University Hospital Galway

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: sam_cd6e01ed-f73a-4b90-a83d-ed311d184df9

text: University Hospital Galway

text: Ireland

text: Homo sapien


text: University Hospital Galway

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sam_ab3ab022-3118-4ab3-b19f-c0e86033b993

characteristic: Submitter Id

text: University Hospital Galway

text: Ireland

text: Homo sapien


characteristic: ENA checklist

text: University Hospital Galway

text: public

text: sam_116987a0-abee-4518-8ccd-ad56f47c9d9d

text: University Hospital Galway

characteristic: collected by

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Idikan


text: University Hospital Galway

text: public

text: sam_1ce4f6a2-795a-4184-a3c6-f1eeaf86437e

text: University Hospital Galway

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien


text: University Hospital Galway

text: public

text: sam_0a9ca10e-c799-4a91-8976-d7f2370ff7d7

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Bareilly


characteristic: ENA-CHECKLIST

text: University Hospital Galway

text: public

text: sam_f1d46691-9c42-4135-ac59-85792cdf57ed

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:School of biomedical engineering,Shanghai Jiao Tong University

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Sertoli cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Sertoli cells were isolated from testes of 6 dpp mice and maintained in DMEM/F12 media supplemented with 2.5%FBS, 5%horse serum, 2mML-Gln, 100U/mLpenicillin, 1uMsodium pyruvate Sertoli cells lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Cells were cross-linked with 1% formaldehyde for 10 min at room temperature and formaldehyde was then inactivated by the addition of 125 mM glycine for 5min. Sonicated DNA fragments with 100-300 bp were pre-cleared and then immunoprecipitated with Protein A+G Magnetic beads coupled with Anti-Androgen Receptor antibody (06-680, Millipore).

characteristic: description

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: SSC

characteristic: strain

text: ChIP-seq-androgen-SSC

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: School of biomedical engineering,Shanghai Jiao Tong University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Sertoli cell

text: house mouse

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: SSC

text: ChIP-seq-IgG-SSC-input


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Sertoli cell

text: house mouse

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male

text: SSC


characteristic: ENA checklist

text: University Hospital Galway

text: public

text: sam_4bd9c7ae-6bd8-44c4-9f44-2099e46a0068

text: University Hospital Galway

characteristic: collected by

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien

characteristic: host scientific name

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

text: sam_68631b5c-8746-4554-8c72-91f4c98e36dc

text: University Hospital Galway

text: Ireland

text: Homo sapien

characteristic: title


PAA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: PAA

text: Pseudomonas aeruginosa

characteristic: common name

text: The strains PAIA1, PAIA2, PAIA3, PAIA4 were isolated from patients with noncystic fibrosis bronchiectasis. The rest of the strains were isolated from cystic fibrosis patients. The strains designated by the same letters followed by numbers (e.g., PAA, PAA1, PAA2, PAA3, PAA4) are clonally related.

characteristic: description

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: sputum sample


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: Submitter Id

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: sputum sample


PABB

text: public

text: PABB

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: sputum sample


PACC

text: public

text: PACC

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: sputum sample


PAN

text: public

text: PAN

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: sputum sample


PAR

text: public

text: PAR

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: sputum sample


PAS

text: public

text: PAS

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: sputum sample


text: UNIBE-IG

text: public

text: dog

text: Curly Coated Retriever

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Curly Coated Retriever


Control (MgCl2) replicate 1

text: public

text: Control (MgCl2) replicate 1

tag: Namespace:Martin Luther University Halle-Wittenberg

text: 4 weeks

characteristic: age

text: Japanese rice

text: Nipponbare

characteristic: cultivar

text: Rice leaves were inoculated with different Xanthomonas oryzae pv oryzae (Xoo) strains or MgCl2 as mock control. Leaf material was collected 24h after inoculation. RNA libraries were prepared, poly-A enriched, and sequenced as strand-specific 100 bp single-end reads on an Illumina HiSeq-2500 instrument.

text: 28°C (day), 25° (night), 70% relative humidity

characteristic: growth condition

text: control

characteristic: infect

text: Oryza sativa Japonica Group

text: leaves

characteristic: organism part

text: Oryza sativa Japonica Group

text: 24 hpi

characteristic: time

text: mRNA-seq of Oryza sativa (rice) after Xanthomonas infection


Control (MgCl2) replicate 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Martin Luther University Halle-Wittenberg

characteristic: INSDC center name

text: public

text: Control (MgCl2) replicate 2

text: 4 weeks

text: Japanese rice

text: Nipponbare

text: control

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi

characteristic: title


Control (MgCl2) replicate 3

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Control (MgCl2) replicate 3

text: 4 weeks

text: Japanese rice

text: Nipponbare

text: control

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi


Xoo PXO142 replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Xoo PXO142 replicate 1

text: 4 weeks

text: Japanese rice

characteristic: common name

text: Nipponbare

characteristic: description

text: Xanthomonas oryzae pv. oryzae PXO142

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi


Xoo PXO142 replicate 2

text: public

text: Xoo PXO142 replicate 2

characteristic: Submitter Id

text: 4 weeks

characteristic: age

text: Japanese rice

text: Nipponbare

characteristic: cultivar

text: Xanthomonas oryzae pv. oryzae PXO142

text: Oryza sativa Japonica Group

characteristic: organism

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi


Xoo PXO142 replicate 3

text: public

text: Xoo PXO142 replicate 3

text: 4 weeks

text: Japanese rice

text: Nipponbare

characteristic: growth condition

text: Xanthomonas oryzae pv. oryzae PXO142

characteristic: infect

text: Oryza sativa Japonica Group

text: leaves

characteristic: organism part

text: Oryza sativa Japonica Group

text: 24 hpi

characteristic: time


Xoo ICMP3125 replicate 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Xoo ICMP3125 replicate 1

text: 4 weeks

text: Japanese rice

text: Nipponbare

text: Xanthomonas oryzae pv. oryzae ICMP3125

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi

characteristic: title


Xoo ICMP3125 replicate 2

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Xoo ICMP3125 replicate 2

text: 4 weeks

text: Japanese rice

text: Nipponbare

text: Xanthomonas oryzae pv. oryzae ICMP3125

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi


Xoo ICMP3125 replicate 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: Xoo ICMP3125 replicate 3

text: 4 weeks

text: Japanese rice

characteristic: common name

text: Nipponbare

characteristic: description

text: Xanthomonas oryzae pv. oryzae ICMP3125

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi


Xoo PXO83 replicate 1

text: public

text: Xoo PXO83 replicate 1

characteristic: Submitter Id

text: 4 weeks

characteristic: age

text: Japanese rice

text: Nipponbare

characteristic: cultivar

text: Xanthomonas oryzae pv. oryzae PXO83

text: Oryza sativa Japonica Group

characteristic: organism

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi


Xoo PXO83 replicate 2

text: public

text: Xoo PXO83 replicate 2

text: 4 weeks

text: Japanese rice

text: Nipponbare

characteristic: growth condition

text: Xanthomonas oryzae pv. oryzae PXO83

characteristic: infect

text: Oryza sativa Japonica Group

text: leaves

characteristic: organism part

text: Oryza sativa Japonica Group

text: 24 hpi

characteristic: time


Xoo PXO83 replicate 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Xoo PXO83 replicate 3

text: 4 weeks

text: Japanese rice

text: Nipponbare

text: Xanthomonas oryzae pv. oryzae PXO83

text: Oryza sativa Japonica Group

text: leaves

text: Oryza sativa Japonica Group

text: 24 hpi

characteristic: title


text: UNIVERSITY OF SZEGED

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Chlorocebus sabaeus

text: Chlorocebus sabaeus

text: MinIon-dRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF SZEGED

text: public

text: Chlorocebus sabaeus

text: Chlorocebus sabaeus


text: UNIVERSITY OF SZEGED

text: public

characteristic: Submitter Id

text: Chlorocebus sabaeus

text: Chlorocebus sabaeus

text: RSIIRnd


A-protocol

text: IFREMER

text: public

text: A-protocol

text: Norovirus 03/2010/Nanjing

text: Norovirus 03/2010/Nanjing

text: Salmon


B-protocol

text: IFREMER

text: public

text: B-protocol

text: Norovirus 03/2010/Nanjing

text: Norovirus 03/2010/Nanjing

text: Salmon


Temoin

text: IFREMER

text: public

text: Temoin

text: Norovirus 03/2010/Nanjing

text: Norovirus 03/2010/Nanjing

text: Salmon-A


text: CGR

text: public

text: Calicophoron daubneyi

text: Calicophoron daubneyi


E-MTAB-6460:Sample 1

text: King's College London

text: public

text: E-MTAB-6460:Sample 1

tag: Namespace:King's College London

text: 12 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Left ventricle was harvested from mouse. TAB1 (V390A, Y392A, V408G, and M409A) KI mouse generation: The targeting vector 5′ homology arm and 3′ homology arm was amplified from BAC DNA and confirmed by end sequencing; the mutations V390A, Y392A, V408G, and M409A were introduced into exon 10 by site-directed mutagenesis with QuikChange Site-Directed Mutagenesis Kit (Agilent Technologies). The targeting construct was electroporated into C57BL/6 ES cells, 375 G418-resistant colonies were picked, and the PCR assays were performed with primers 5PCR_F and 5PCR_R. Thirty-four potential targeted clones were identified. Six of them were expanded and frozen. The Southern blot analysis was conducted with 5′-probe, 3′-probe, and Neoprobe. The genomic DNA of the potential clones were digested with Bg1II for the 5′-probe and analysed by Southern blot for a 8.0-Kb band from the WT allele and a 10.0 Kb band for the recombinant allele; for the 3′ probe, the genomic DNA was digested with XmaI and analyzed by Southern blot for a 7.8-Kb band from the WT allele and a 5.7-Kb band for the recombinant allele. Regarding the Neo probe, the genomic DNA was digested with NsiI and analyzed by Southern blot for a 6.6-Kb band for the recombinant allele. TAB1 (V390A, Y392A, V408G, and M409A) F1 mice were generated from the ES cell lines 2C9. Five (3 males and 2 females) out of 8 pups were identified as positive by PRC screening: the expected 261-bp fragment from WT allele and 405-bp fragment from recombinant allele were represented as positive F1 mice. The primers used for the screening were: Neo_Del_F and Neo_Del_R. The primers sequences used were: 5PCR_F: 5′-GCGGAGTATTAGGAGCCTGAGGGT-3′, 5PCR_R: 5′-GCTGACCGCTTCCTCGTGCTTTA-3′, 5′-probe_F: 5′-CAGCCACTTGTGAGACCAGAGGA-3′, 5′-probe_R: 5′-GGACAAGCCTGTGAGGTGATGACA-3′, 3′-probe_F: 5′-GGTCCCTCACAAGGGTTAAGCAACT- 3′, 3′-probe_R: 5′-GAACTTGTCTGTGCTCTGAGCTGGC-3′, Neo-probe_F: 5′-CCTGAATGAACTGCAGGACGAGG- 3′, Neo-probe_R: 5′-AGCTCTTCAGCAATATCACGGGTAGC-3′, Neo_Del_F: 5′-GCTGGCCTTGCTCAACTCCAG-3′, Neo_Del_R: 5′-GACCATCTGTCTCATACCTGACCTCAC- 3′ RNA was extracted from 40 - 60mg of mouse left ventricle using 900ul of TRI-Reagent® (Ambion) followed by MagMax™-96 for Microarrays Kit (Ambion, AM1839) according to the Spin Procedure. In summary, tissues were homogenised in TRI- Reagent® for 5 - 10 minutes at room temperature using TissueLyser (QIAGEN). The homogenate was mixed with 0.1 volumes of 1-bromo-3-chloropropane (BCP) and centrifuged at 12 000 x g at 4°C for 10 minutes. The 100ul of aqueous phase was collected and mixed with 50ul of 100% isopropanol. RNA was bound to RNA Binding Beads. The Beads were washed twice with wash solution, and total RNA was eluted in Elution buffer. RNA was quantified using the NanoDrop 1000 spectrophotometer (Thermo Scientific). RNA integrity was analysed using the the Bioanalyzer RNA Nano Kit (Agilent). 100 ng of intact high quality total RNA (RIN>9) from each sample was used as input to generate libraries for RNA-seq using the NEBNext Ultra Directional kit (NEB, Cat.no: E7420) following the manufacturer’s recommendations. This protocol involved an initial step of rRNA depletion, followed by fragmentation prior to first cDNA synthesis. Each sample was barcoded during second-strand cDNA synthesis with indices for illumina sequencing. A single index was used per sample (illumina indices 1 to 10). Libraries were enriched by PCR for 15 cycles. The resulting libraries were purified using Agencourt AMpure Xp beads (Beckman). Library quality was assessed on the Bioanlyzer 2100 using DNA High Sensitivity kit. The library size distribution was determined using Agilent 2100 expert software.

characteristic: description

text: Myocardial Ischemia

characteristic: disease

text: TAB1 knock-in

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-6460:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: King's College London

characteristic: INSDC center name

text: public

text: E-MTAB-6460:Sample 10

text: 12 to 14

text: ArrayExpress

text: house mouse

text: Myocardial Ischemia

text: TAB1 knock-in

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart left ventricle

characteristic: organism part

text: Mus musculus

text: male

text: Sample 10


E-MTAB-6460:Sample 7

text: King's College London

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6460:Sample 7

text: 12 to 14

text: ArrayExpress

text: house mouse

text: Myocardial Ischemia

text: TAB1 knock-in

text: Mus musculus

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

text: Sample 7

characteristic: title


E-MTAB-6460:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: King's College London

text: public

text: E-MTAB-6460:Sample 8

characteristic: Submitter Id

text: 12 to 14

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Myocardial Ischemia

text: TAB1 knock-in

text: Mus musculus

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

text: Sample 8


E-MTAB-6460:Sample 9

text: King's College London

text: public

text: E-MTAB-6460:Sample 9

text: 12 to 14

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: Myocardial Ischemia

characteristic: disease

text: TAB1 knock-in

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

characteristic: sex

text: Sample 9


E-MTAB-6460:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: King's College London

characteristic: INSDC center name

text: public

text: E-MTAB-6460:Sample 2

text: 12 to 14

text: ArrayExpress

text: house mouse

text: Myocardial Ischemia

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

characteristic: strain

text: Sample 2


E-MTAB-6460:Sample 3

text: King's College London

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6460:Sample 3

text: 12 to 14

text: ArrayExpress

text: house mouse

text: Myocardial Ischemia

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart left ventricle

characteristic: organism part

text: Mus musculus

text: male

text: Sample 3


E-MTAB-6460:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: King's College London

text: public

text: E-MTAB-6460:Sample 4

characteristic: Submitter Id

text: 12 to 14

characteristic: age

text: ArrayExpress

text: house mouse

text: Myocardial Ischemia

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

text: Sample 4

characteristic: title


E-MTAB-6460:Sample 5

text: King's College London

text: public

text: E-MTAB-6460:Sample 5

text: 12 to 14

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: Myocardial Ischemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

text: Sample 5


E-MTAB-6460:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: King's College London

characteristic: INSDC center name

text: public

text: E-MTAB-6460:Sample 6

text: 12 to 14

text: ArrayExpress

text: house mouse

text: Myocardial Ischemia

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart left ventricle

text: Mus musculus

text: male

characteristic: sex

text: Sample 6


text: University of York

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of York

text: Ampicillin + Tetracycline population 5, transfer 8, clone 1

text: Escherichia coli

text: Escherichia coli

text: Temporal dynamics plasmid host coevolution


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of York

text: public

characteristic: Submitter Id

text: Ampicillin + Tetracycline population 5, transfer 8, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 8, clone 3

text: Escherichia coli

text: Escherichia coli

characteristic: title


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 16, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 16, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 16, clone 3

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 40, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 40, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 5, transfer 40, clone 3

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 8, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 8, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 8, clone 3

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 16, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 16, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 16, clone 3

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 40, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 40, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Ampicillin + Tetracycline population 2, transfer 40, clone 3

text: Escherichia coli

text: Escherichia coli

text: Temporal dynamics plasmid host coevolution


text: University of York

text: public

text: Tetracycline population 4, transfer 8, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 8, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 8, clone 3

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 16, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 16, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 16, clone 3

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 40, clone 1

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 40, clone 2

text: Escherichia coli

text: Escherichia coli


text: University of York

text: public

text: Tetracycline population 4, transfer 40, clone 3

text: Escherichia coli

text: Escherichia coli


E-MTAB-7135:Sample 1

text: public

text: E-MTAB-7135:Sample 1

tag: Namespace:Beijing Institute of Basic Medical Sciences

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: house mouse

characteristic: common name

text: Protocols: Stable GM614- and EGFP-expressing SP 2/0 cells, and the control EGFP-expressing SP 2/0 cells were collected after after cultured for 2 days in fresh medium. Samples were washed twice with PBS and 1 mL of TRIzol per 1 x 107 cell pellets was added and frozen in -80℃. GM614 cDNA (General Biosystems, Anhui, China) was cloned into lentiviral vector EGFP-expressing LV201 (Fugene Corp., Guangzhou, China) to generate GM614 protein. Empty LV201 and GM614-expressing LV201 was transfected into SP 2/0 cells (ATCC® CRL-1581™, https://www.atcc.org/products/all/CRL-1581.aspx), and stable transfectants were identified by EGFP expression and drug selection (Puromycin, Sigma, 10 μg/ml). Stable GM614-expressing SP 2/0 cells and LV201-transduced SP 2/0 cells were cultured in fresh ATCC-formulated Dulbecco's Modified Eagle's Medium (Catalog No. 30-2002) containing 10% FBS, 2 mM glutamine, penicillin (100 IU/ml), streptomycin (100 ug/ml), and 50 mM 2-mercaptoethanol. Cells were collected on ice after cultured for 2 days in fresh medium. Data were aligned using STAR with options --outFilterScoreMinOverLread 0.4 --outFilterMatchNminOverLread 0.4, against the C3H/HeJ genome as a reference (ftp://ftp.ensembl.org/pub/release-89/fasta/mus_musculus_c3hhej/dna/Mus_musculus_c3hhej.C3H_HeJ_v1.dna_sm.toplevel.fa.gz). Total RNA from cells was isolated and purified using the RNeasy Mini Kit (Qiagen, Venlo, Netherlands). All RNA content in the samples was measured with a NanoDrop®ND-1000 spectrophotometer, and the RNA quality was assessed using RNA 6000 NanoChips with the Agilent 2100 Bioanalyzer (Agilent, Palo Alto, CA, USA). Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold (Illumina).

text: empty vector LV201

text: Mus musculus

text: Mus musculus

text: mixed spleen and skin

characteristic: organism part

text: empty vector

characteristic: phenotype

text: Mus musculus

text: BALB/c

characteristic: strain

text: Sample 1


E-MTAB-7135:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Beijing Institute of Basic Medical Sciences

characteristic: INSDC center name

text: public

text: E-MTAB-7135:Sample 2

text: ArrayExpress

text: house mouse

characteristic: description

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: mixed spleen and skin

text: Gm614 overexpression

text: Mus musculus

text: BALB/c

text: Sample 2


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

text: TRUE

characteristic: elevation

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Blank

characteristic: longitude

text: Not collected

text: metagenome

characteristic: organism

text: UCSDMI

text: FALSE

text: control blank

characteristic: sample type

text: metagenome

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: TRUE

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: years

text: cm

text: kg

text: Not collected

text: Blank

text: Not collected

text: metagenome

text: UCSDMI

text: FALSE

text: control blank

text: metagenome

text: CF cross sectional

characteristic: title


text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Ped

text: Not collected

characteristic: allergy

characteristic: anonymized name

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Vaginal, Spontaneous Delivery

text: OP

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-oral

characteristic: env package

text: saliva

text: Non-Hispanic

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: saliva

characteristic: host body habitat

characteristic: host body mass index

text: saliva

characteristic: host body product

text: saliva

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Breast/Bottle

text: human metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: saliva

text: human metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: Not collected

characteristic: allergy

characteristic: anonymized name

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Vaginal, Spontaneous Delivery

text: SK

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal surface

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

text: sebum

text: Non-Hispanic

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:skin

text: UBERON:skin

text: UBERON:sebum

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Breast/Bottle

text: human skin metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: White or Caucasian

text: skin

text: human skin metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: LIDOCAINE

text: Restricted access

text: Not collected

text: Not collected

text: Not collected

text: SK

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal surface

text: urban biome

text: human-associated habitat

text: human-skin

characteristic: env package

text: sebum

text: Non-Hispanic

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: UBERON:skin

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:skin

characteristic: host body product

text: UBERON:sebum

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human skin metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: skin

text: human skin metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: LIDOCAINE

characteristic: allergy

characteristic: anonymized name

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Not collected

text: OP

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-oral

text: saliva

text: Non-Hispanic

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: saliva

text: saliva

text: saliva

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Not collected

text: human oral metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: White or Caucasian

text: saliva

text: human oral metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: LIDOCAINE

text: Restricted access

text: Not collected

text: Not collected

text: Not collected

text: Spu

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-associated

characteristic: env package

text: mucus

text: Non-Hispanic

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: UBERON:respiratory system

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:sputum

characteristic: host body product

text: UBERON:lung

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human lung metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: sputum

text: human lung metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: LIDOCAINE

characteristic: allergy

characteristic: anonymized name

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Not collected

text: ST

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-gut

text: feces

text: Non-Hispanic

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Not collected

text: human gut metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: White or Caucasian

text: stool

text: human gut metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: VANCOMYCIN

text: Not collected

text: Restricted access

text: Not collected

text: Not collected

text: Not collected

text: SK

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal surface

text: urban biome

text: human-associated habitat

text: human-skin

characteristic: env package

text: sebum

text: Hispanic

characteristic: ethnicity

text: female

characteristic: gender

text: USA:CA:San Diego

text: Not collected

characteristic: host age

text: UBERON:skin

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:skin

characteristic: host body product

text: UBERON:sebum

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human skin metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: skin

text: human skin metagenome

text: female

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: VANCOMYCIN

characteristic: allergy

characteristic: anonymized name

text: Not collected

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Not collected

text: OP

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-oral

text: saliva

text: Hispanic

text: female

text: USA:CA:San Diego

characteristic: geo loc name

text: Not collected

text: saliva

text: saliva

text: saliva

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Not collected

text: human oral metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: White or Caucasian

text: saliva

text: human oral metagenome

text: female

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: ADHESIVE TAPE;CEFAZOLIN;CEFEPIME;CLAVULANIC ACID;PENICILLINS CROSS REACTORS;SULFA DRUGS

text: Restricted access

text: Not collected

text: Not collected

text: Vaginal, Spontaneous Delivery

text: SK

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal surface

text: urban biome

text: human-associated habitat

text: human-skin

characteristic: env package

text: sebum

text: Non-Hispanic

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: UBERON:skin

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:skin

characteristic: host body product

text: UBERON:sebum

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human skin metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: skin

text: human skin metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

characteristic: allergy

characteristic: anonymized name

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Vaginal, Spontaneous Delivery

text: OP

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-oral

text: saliva

text: Non-Hispanic

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: saliva

text: saliva

text: saliva

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Not collected

text: human oral metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: White or Caucasian

text: saliva

text: human oral metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: ADHESIVE TAPE;CHLORHEXIDINE;IMIPENEM;PENICILLINS;SILVER

text: Not collected

text: Restricted access

text: Not collected

text: Not collected

text: Vaginal, Spontaneous Delivery

text: OP

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-oral

characteristic: env package

text: saliva

text: Non-Hispanic

characteristic: ethnicity

text: female

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: saliva

characteristic: host body habitat

characteristic: host body mass index

text: saliva

characteristic: host body product

text: saliva

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human oral metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: saliva

text: human oral metagenome

text: female

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: Not collected

characteristic: allergy

characteristic: anonymized name

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: Vaginal, Spontaneous Delivery

text: SK

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal surface

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

text: sebum

text: Hispanic

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:skin

text: UBERON:skin

text: UBERON:sebum

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Not collected

text: human skin metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: Other

text: skin

text: human skin metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: AMOXICILLIN;PREDNISONE;SULFAMETHOXAZOLE W-TRIMETHOPRIM;VANCOMYCIN

text: Not collected

text: Restricted access

text: Not collected

text: Not collected

text: C-Section, Unspecified

text: OP

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-oral

characteristic: env package

text: saliva

text: Non-Hispanic

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: saliva

characteristic: host body habitat

characteristic: host body mass index

text: saliva

characteristic: host body product

text: saliva

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human oral metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: saliva

text: human oral metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

characteristic: allergy

characteristic: anonymized name

text: Not collected

characteristic: bmi

characteristic: collection time

text: Restricted access

text: Not collected

characteristic: day

text: Not collected

text: C-Section, Unspecified

text: SK

characteristic: description

text: TRUE

text: Restricted access

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal

text: Animal surface

text: urban biome

characteristic: env biome

text: human-associated habitat

characteristic: env feature

text: human-skin

text: sebum

text: Non-Hispanic

text: male

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:skin

text: UBERON:skin

text: UBERON:sebum

text: human

text: Homo sapiens

characteristic: host subject id

text: years

text: cm

text: kg

text: Not collected

characteristic: inhaledanti

characteristic: latitude

text: Lim

characteristic: longitude

text: Not collected

text: Not collected

text: Not collected

text: human skin metagenome

characteristic: organism

text: Not collected

text: UCSDMI

text: FALSE

text: White or Caucasian

text: skin

text: human skin metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ped

text: VANCOMYCIN

text: Restricted access

text: Not collected

text: Not collected

text: Vaginal, Spontaneous Delivery

text: OP

text: TRUE

text: Restricted access

text: Host-associated

text: Animal

text: Animal secretion

text: urban biome

text: human-associated habitat

text: human-oral

characteristic: env package

text: saliva

text: Hispanic

characteristic: ethnicity

text: male

characteristic: gender

text: USA:CA:San Diego

characteristic: host age

text: saliva

characteristic: host body habitat

characteristic: host body mass index

text: saliva

characteristic: host body product

text: saliva

characteristic: host body site

text: human

characteristic: host common name

characteristic: host height

text: Homo sapiens

characteristic: host scientific name

characteristic: host taxid

characteristic: host weight

text: years

text: cm

text: kg

characteristic: ht

text: Not collected

text: Lim

text: Not collected

text: Not collected

text: Not collected

text: human oral metagenome

text: Not collected

characteristic: patient status

text: UCSDMI

text: FALSE

text: White or Caucasian

characteristic: race

text: saliva

text: human oral metagenome

text: male

text: Not collected

text: Not collected

text: CF cross sectional