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text: ArrayExpress

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

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text: E-MTAB-6798:2638sTS.Mouse.Kidney.18.5.Female

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text: E-MTAB-6798:2309sTS.Mouse.Liver.18.5.Male

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text: E-MTAB-6798:2310sTS.Mouse.Testis.18.5.Male

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: embryo

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text: E-MTAB-6798:1900sTS.Mouse.Brain.0dpb.Female

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text: E-MTAB-6798:1906sTS.Mouse.Brain.0dpb.Male

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text: postnatal

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

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text: The University of Heidelberg

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text: E-MTAB-6798:2652sTS.Mouse.Kidney.2wpb.Female

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text: E-MTAB-6798:2654sTS.Mouse.Kidney.2wpb.Female

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text: The University of Heidelberg

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text: E-MTAB-6798:1878sTS.Mouse.Liver.2wpb.Male

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text: The University of Heidelberg

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text: The University of Heidelberg

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text: E-MTAB-6798:1887sTS.Mouse.Ovary.2wpb.Female

characteristic: Submitter Id

characteristic: age

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text: The University of Heidelberg

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text: E-MTAB-6798:1891sTS.Mouse.Ovary.2wpb.Female

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text: The University of Heidelberg

characteristic: INSDC center name

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text: E-MTAB-6798:1879sTS.Mouse.Testis.2wpb.Male

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text: house mouse

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characteristic: organism part

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text: E-MTAB-6798:1883sTS.Mouse.Testis.2wpb.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:1892sTS.Mouse.Brain.4wpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

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text: Mus musculus

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:1896sTS.Mouse.Brain.4wpb.Male

text: ArrayExpress

text: house mouse

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text: The University of Heidelberg

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text: E-MTAB-6798:1936sTS.Mouse.Brain.4wpb.Female

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characteristic: SRA accession

text: E-MTAB-6798:1940sTS.Mouse.Brain.4wpb.Female

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

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text: E-MTAB-6798:2655sTS.Mouse.Heart.4wpb.Female

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characteristic: age

text: ArrayExpress

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text: house mouse

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

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text: E-MTAB-6798:2657sTS.Mouse.Heart.4wpb.Female

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characteristic: title


text: The University of Heidelberg

characteristic: INSDC center name

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text: E-MTAB-6798:2659sTS.Mouse.Heart.4wpb.Male

text: ArrayExpress

text: house mouse

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text: wild type genotype

text: Mus musculus

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characteristic: strain


text: The University of Heidelberg

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characteristic: SRA accession

text: E-MTAB-6798:2661sTS.Mouse.Heart.4wpb.Male

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text: The University of Heidelberg

text: public

text: E-MTAB-6798:1893sTS.Mouse.Cerebellum.4wpb.Male

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characteristic: age

text: ArrayExpress

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characteristic: ENA-CHECKLIST

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characteristic: External Id

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text: E-MTAB-6798:1897sTS.Mouse.Cerebellum.4wpb.Male

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text: E-MTAB-6798:1937sTS.Mouse.Cerebellum.4wpb.Female

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text: E-MTAB-6798:1941sTS.Mouse.Cerebellum.4wpb.Female

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text: The University of Heidelberg

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text: E-MTAB-6798:2656sTS.Mouse.Kidney.4wpb.Female

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characteristic: age

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text: The University of Heidelberg

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text: E-MTAB-6798:2660sTS.Mouse.Kidney.4wpb.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:1894sTS.Mouse.Liver.4wpb.Male

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text: E-MTAB-6798:1939sTS.Mouse.Ovary.4wpb.Female

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

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text: The University of Heidelberg

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text: E-MTAB-6798:1895sTS.Mouse.Testis.4wpb.Male

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characteristic: organism

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text: E-MTAB-6798:1918sTS.Mouse.Brain.3dpb.Female

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text: E-MTAB-6798:1964sTS.Mouse.Brain.3dpb.Male

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text: E-MTAB-6798:1920sTS.Mouse.Heart.3dpb.Female

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characteristic: External Id

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text: E-MTAB-6798:1932sTS.Mouse.Heart.3dpb.Female

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text: E-MTAB-6798:1919sTS.Mouse.Cerebellum.3dpb.Female

characteristic: Submitter Id

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characteristic: ENA-CHECKLIST

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text: The University of Heidelberg

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text: E-MTAB-6798:1925sTS.Mouse.Cerebellum.3dpb.Male

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text: E-MTAB-6798:1931sTS.Mouse.Cerebellum.3dpb.Female

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text: E-MTAB-6798:1921sTS.Mouse.Kidney.3dpb.Female

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characteristic: age

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characteristic: External Id

text: The University of Heidelberg

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text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

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text: The University of Heidelberg

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text: E-MTAB-6798:1933sTS.Mouse.Kidney.3dpb.Female

text: ArrayExpress

text: house mouse

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text: The University of Heidelberg

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characteristic: SRA accession

text: E-MTAB-6798:2642sTS.Mouse.Kidney.3dpb.Male

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text: The University of Heidelberg

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text: E-MTAB-6798:1922sTS.Mouse.Liver.3dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

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characteristic: External Id

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text: E-MTAB-6798:1934sTS.Mouse.Liver.3dpb.Female

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text: house mouse

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text: public

characteristic: SRA accession

text: E-MTAB-6798:1966sTS.Mouse.Liver.3dpb.Female

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: female


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1923sTS.Mouse.Ovary.3dpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ovary

text: Mus musculus

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:1935sTS.Mouse.Ovary.3dpb.Female

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ovary

text: Mus musculus

text: female

characteristic: title


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:1929sTS.Mouse.Testis.3dpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

characteristic: strain


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:1967sTS.Mouse.Testis.3dpb.Male

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1944sTS.Mouse.Brain.9wpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: forebrain

characteristic: organism part

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:1948sTS.Mouse.Brain.9wpb.Female

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: forebrain

text: Mus musculus

text: female

characteristic: sex


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:1954sTS.Mouse.Brain.9wpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: forebrain

text: Mus musculus

text: male

characteristic: title


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:1960sTS.Mouse.Brain.9wpb.Female

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: forebrain

text: Mus musculus

text: female

characteristic: strain


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1950sTS.Mouse.Heart.9wpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: heart

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:1956sTS.Mouse.Heart.9wpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

characteristic: organism part

text: Mus musculus

text: male


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:2663sTS.Mouse.Heart.9wpb.Male

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: male

characteristic: sex


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:2669sTS.Mouse.Heart.9wpb.Female

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: heart

text: Mus musculus

text: female

characteristic: title


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1945sTS.Mouse.Cerebellum.9wpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: male

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:1949sTS.Mouse.Cerebellum.9wpb.Female

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hindbrain

text: Mus musculus

text: female


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:1955sTS.Mouse.Cerebellum.9wpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

characteristic: organism part

text: Mus musculus

text: male


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:1961sTS.Mouse.Cerebellum.9wpb.Female

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: hindbrain

text: Mus musculus

text: female

characteristic: sex


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1951sTS.Mouse.Kidney.9wpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:2664sTS.Mouse.Kidney.9wpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male

characteristic: strain


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:2665sTS.Mouse.Kidney.9wpb.Female

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: kidney

text: Mus musculus

text: female


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:5360sTS.Mouse.Kidney.9wpb.Male

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: kidney

characteristic: organism part

text: Mus musculus

text: male


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1946sTS.Mouse.Liver.9wpb.Male

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:1952sTS.Mouse.Liver.9wpb.Female

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:1958sTS.Mouse.Liver.9wpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: strain


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:1962sTS.Mouse.Liver.9wpb.Female

text: ArrayExpress

text: house mouse

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: female


text: The University of Heidelberg

text: public

text: E-MTAB-6798:1953sTS.Mouse.Ovary.9wpb.Female

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ovary

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

text: E-MTAB-6798:1963sTS.Mouse.Ovary.9wpb.Female

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ovary

text: Mus musculus

text: female

characteristic: sex


text: The University of Heidelberg

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-6798:1947sTS.Mouse.Testis.9wpb.Male

text: ArrayExpress

text: house mouse

text: postnatal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

characteristic: title


text: The University of Heidelberg

text: public

characteristic: SRA accession

text: E-MTAB-6798:1959sTS.Mouse.Testis.9wpb.Male

text: ArrayExpress

text: house mouse

text: Protocols: The organs were dissected from 14 developmental stages (starting at e10.5 until P63). Until e12.5 the dissected ‘brain’ samples correspond to the whole brain, and from e13.5 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘hindbrain’ samples correspond to the prepontine hindbrain-enriched brain region (until e15.5) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

characteristic: description

text: postnatal

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male

characteristic: strain


text: Virginia Commonwealth University

text: public

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: female scalp hair

text: human hair

characteristic: environment (biome)

text: scalp hair

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: Hair Microbiome

characteristic: project name

text: Homo sapiens

text: 16S rRNA

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Virginia Commonwealth University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: human

text: female pubic hair

characteristic: description

text: human hair

text: pubic hair

text: air

text: USA

text: host-associated

text: metagenome

text: Homo sapiens

text: Hair Microbiome

text: Homo sapiens

text: 16S rRNA

text: TK _2_FP

characteristic: title


text: Virginia Commonwealth University

text: public

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: female pubic hair

text: human hair

characteristic: environment (biome)

text: pubic hair

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Homo sapiens

text: Hair Microbiome

text: Homo sapiens

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Virginia Commonwealth University

text: public

text: human

text: male scalp hair

text: human hair

text: scalp hair

text: air

text: USA

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: Hair Microbiome

characteristic: project name

text: Homo sapiens

text: 16S rRNA

characteristic: sequencing method


text: Virginia Commonwealth University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: human

text: male pubic hair

characteristic: description

text: human hair

text: pubic hair

text: air

text: USA

text: host-associated

text: metagenome

text: Homo sapiens

text: Hair Microbiome

text: Homo sapiens

text: 16S rRNA

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Virginia Commonwealth University

text: public

text: human

characteristic: common name

text: male scalp hair

text: human hair

characteristic: environment (biome)

text: pubic hair

characteristic: environment (feature)

text: air

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: Homo sapiens

text: Hair Microbiome

text: Homo sapiens

text: 16S rRNA


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Virginia Commonwealth University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: female scalp hair

text: human hair

text: pubic hair

text: air

text: USA

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: Hair Microbiome

characteristic: project name

text: Homo sapiens

text: 16S rRNA

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF NEW SOUTH WALES

characteristic: Submitter Id

text: metagenome

text: metagenome

text: metagenome

text: faecal

characteristic: title


text: public

tag: Namespace:Department of Gastroenterology, West China Hospital, SCU

characteristic: collection date

characteristic: description

text: rat gut

characteristic: environment (biome)

text: anaerobic

characteristic: environment (feature)

text: gut content

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: metagenome

text: Microbiota Composition in Rat Model of Acute Pancreatitis

text: metagenome

text: Miseq amplicon

text: Obesity with acute pancreatitis lead to dysbiosis


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Gastroenterology, West China Hospital, SCU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: rat gut

text: anaerobic

text: gut content

text: China

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

characteristic: project name

text: metagenome

text: Miseq amplicon


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: IFIK

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: subject 1 follow up oropharyngeal swab (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome

characteristic: title


text: IFIK

text: public

text: subject 1 follow up tracheobronchial secretions (Haemophilus influenzae Ventilator-associated pneumonia)

characteristic: description

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 1 initial oropharyngeal swab (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 1 initial tracheobronchial secretions (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 1 last oropharyngeal swab (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 16 follow up oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 16 follow up tracheobronchial secretions (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 16 initial oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 16 initial tracheobronchial secretions (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 16 last oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 16 last tracheobronchial secretions (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 17 follow up oropharyngeal swab (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 17 follow up tracheobronchial secretions (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 17 initial oropharyngeal swab (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 17 initial tracheobronchial secretions (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 17 last oropharyngeal swab (Haemophilus influenzae Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 20 follow up oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 20 follow up tracheobronchial secretions (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 20 initial oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 25 follow up oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 25 follow up tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 25 initial oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 26 follow up oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 26 follow up tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 26 initial oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 26 initial tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 27 follow up oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 27 follow up tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 27 initial oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 27 last oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 3 follow up oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 3 follow up tracheobronchial secretions (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 3 initial oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 3 last oropharyngeal swab (Ventilator-associated pneumonia)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 7 follow up oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 7 follow up tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 7 initial oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 7 initial tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 8 follow up oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 8 follow up tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 8 initial oropharyngeal swab (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: IFIK

text: public

text: subject 8 initial tracheobronchial secretions (control)

text: respiratory tract metagenome

text: respiratory tract metagenome


text: University of Cambridge

text: public

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: broker name

text: embryonic stem cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Cells were harvested in TRIzol (Life Technologies) for RNA purification. Cells were maintained on gelatin-coated culture vessels in 2i/LIF, consisting of DMEM:F-12 and Neurobasal media (1:1, Invitrogen) supplemented with N2 (in-house) and B27 (Gibco), L-glutamine and beta-mercaptoethanol, 3μM CHIR99021 and 1μM PD0325901 inhibitors, plus 10ng/ml LIF. Translocation of Mbd3b protein to the nucleus was induced with 4-hydroxytamoxifen added directly to the culture media to a final concentration of 0.4 nM for varying times as indicated. Metabolic labeling for purification of nascent transcripts was carried out by exposure to 500 uM 4-thiouridine for 15 minutes. RNA was extracted with TRIzol (Life Technologies). Libraries were prepared using the SMARTer Stranded Total RNA-Seq Kit v2 - Pico Input Mammalian (Takara Bio).

text: embryo

characteristic: developmental stage

text: Mbd3 inducible

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: inner cell mass

characteristic: organism part

text: Mus musculus

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: collection date

text: foxtail millet

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: field

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

characteristic: organism

text: shooting stage

characteristic: plant developmental stage

text: field

characteristic: plant growth medium

text: PO_0025034 leaf

characteristic: plant structure

text: Setaria italica

text: Row RNAseq data of yugu1 and sistl1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

characteristic: common name

text: China

text: field

text: Setaria italica

text: shooting stage

text: field

text: PO_0025034 leaf

text: Setaria italica

text: Row RNAseq data of yugu1 and sistl1

characteristic: title


text: Escherichia coli

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

characteristic: subject id


text: klebsiella pneumoniae

text: SC

text: public

text: klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae


text: Escherichia coli

text: SC

text: public

characteristic: anonymized name

characteristic: collection date

text: Escherichia coli

text: Malawi

characteristic: country

text: Stool

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Human

characteristic: specific host

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SLU

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: dog

text: Whole genome sequence of a Labrador retriever

characteristic: description

text: Sweden

characteristic: geographic location (country and/or sea)

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Male

characteristic: sex

text: Whole blood

characteristic: tissue type

text: Labrador retriever WGS


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SLU

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: dog

characteristic: common name

text: Sweden

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Female

text: Whole blood

text: Labrador retriever WGS

characteristic: title


text: SLU

text: public

text: dog

text: Whole genome sequence of a Labrador retriever affected with retinopathy

text: Sweden

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: Female

text: Whole blood

text: Labrador retriever WGS


characteristic: ENA-CHECKLIST

text: SLU

text: public

text: dog

text: Sweden

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Male

text: Whole blood

text: Labrador retriever WGS


characteristic: ENA-FIRST-PUBLIC

text: DTU Biosustain

text: public

tag: Namespace:DTU Biosustain

characteristic: collection date

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1A isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 1

text: laboratory culture

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1A isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1A isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 2

characteristic: description

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1B isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1B isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 2

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1B isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-24M1B isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 2

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-73F1 isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-73F1 isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 2

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-73F1 isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-73F1 isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 2

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-77F1 isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-77F1 isolate. LB medium, shaking (250 rpm), stationary phase. Biological replicate 2

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-77F1 isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 1

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: DTU Biosustain

text: public

text: Pseudomonas aeruginosa

text: In vitro RNA-seq of PA-77F1 isolate. LB medium, shaking (250 rpm), exponential phase. Biological replicate 2

text: laboratory culture

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Vibrio cholerae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Vibrio cholerae

text: Vibrio cholerae

text: Vibrio cholerae

characteristic: subject id


text: Blood

characteristic: ArrayExpress-PHENOTYPE

text: Canis familiaris

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: dog

text: Canis lupus familiaris

text: Blood

characteristic: phenotype

text: Canis lupus familiaris


text: Skin

text: Canis familiaris

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: dog

characteristic: common name

text: Canis lupus familiaris

text: Skin

text: Canis lupus familiaris


text: Lymph Node

text: Canis familiaris

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: dog

text: Canis lupus familiaris

characteristic: organism

text: Lymph Node

text: Canis lupus familiaris

characteristic: title


text: Canis Lupus Familiaris

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris


text: Plasmodium falciparum

text: SC

text: public

characteristic: SRA accession

text: malaria parasite P. falciparum

text: Plasmodium falciparum

text: Plasmodium falciparum


text: public

tag: Namespace:Food safety, animal health and environment institute BIOR

characteristic: collection date

text: Latvia, Koceni

characteristic: country

text: Campylobacter jejuni

text: Campylobacter jejuni


text: Food safety, animal health and environment institute BIOR

text: public

text: Latvia, Jelgava

text: Pig

characteristic: host

text: Yes

characteristic: host associated

text: Campylobacter coli

text: Campylobacter coli


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Latvia, Daugavpils

text: Pig

text: Yes

text: Campylobacter coli

text: Campylobacter coli


characteristic: INSDC center name

text: public

text: Latvia, Gulbene

text: Pig

text: Yes

text: feces

characteristic: isolation source host associated

text: Campylobacter coli

text: Campylobacter coli


characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: Latvia, Nīca

text: Pig

text: Yes

text: Campylobacter coli

text: Campylobacter coli


characteristic: ENA-CHECKLIST

text: public

text: Latvia, Kuldīga

text: Pig

text: Yes

text: Campylobacter coli

text: Campylobacter coli


characteristic: ENA-FIRST-PUBLIC

text: public

text: Latvia

text: Pig

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Latvia

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni


text: public

text: Latvia

text: No

text: Campylobacter jejuni

text: Campylobacter jejuni

characteristic: title


characteristic: INSDC last update

text: public

text: Latvia, Tērvete

text: Calf

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

characteristic: INSDC status

text: Latvia, Jelgava

text: calf

text: Yes

text: Campylobacter coli

text: Campylobacter coli


text: public

characteristic: SRA accession

text: Latvia, Rēzekne

text: Calf

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

characteristic: collection date

text: Latvia, Burtnieki

text: Pig

text: Yes

text: Campylobacter coli

text: Campylobacter coli


text: public

text: not provided

characteristic: country

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Latvia

text: Chicken

characteristic: host

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Latvia

text: Homo sapiens

text: Yes

characteristic: host associated

text: feces

text: Campylobacter coli

text: Campylobacter coli


characteristic: ENA-LAST-UPDATE

text: public

text: Latvia, Kocēni

text: Calf

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: External Id

text: public

text: Latvia

text: Homo sapiens

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: INSDC center name

text: public

text: Latvia

text: Homo sapiens

text: Yes

text: feces

text: Campylobacter jejuni

text: Campylobacter jejuni


text: public

text: Latvia

text: Human

text: Yes

text: feces

characteristic: isolation source host associated

text: Campylobacter jejuni

text: Campylobacter jejuni


characteristic: INSDC first public

text: public

text: Latvia

text: Human

text: Yes

text: Campylobacter jejuni

text: Campylobacter jejuni


text: Cell line

characteristic: ArrayExpress-PHENOTYPE

text: Homo sapiens

characteristic: ArrayExpress-SPECIES

text: SC

text: public

characteristic: Submitter Id

text: human

characteristic: common name

text: Homo sapiens

text: Cell line

characteristic: phenotype

text: Homo sapiens

characteristic: subject id


text: female

characteristic: ArrayExpress-SEX

text: Mus musculus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: Female

characteristic: gender

text: Mus musculus

characteristic: organism

text: Mus musculus

characteristic: title


characteristic: ENA checklist

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Hospital Galway

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: sam_a76df05a-9b92-4281-87f8-1260660dcdad

tag: Namespace:University Hospital Galway

text: University Hospital Galway

characteristic: collected by

characteristic: collection date

text: Ireland

characteristic: geographic location (country and/or sea)

text: Homo sapien

characteristic: host scientific name

characteristic: isolate

text: Salmonella enterica subsp. enterica serovar Enteritidis


characteristic: ENA-CHECKLIST

text: University Hospital Galway

characteristic: INSDC first public

text: public

text: sam_11488278-da88-47bf-bcea-6d9742267f44

characteristic: Submitter Id

text: University Hospital Galway

text: Ireland

text: Homo sapien

text: Salmonella enterica subsp. enterica serovar Coeln


characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Key Laboratory of Environmental and Applied Microbiology, CAS

text: sow

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: gut

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: gut metagenome

characteristic: project name

text: gut metagenome

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Key Laboratory of Environmental and Applied Microbiology, CAS

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: collection date

text: sow

text: gut

text: gut

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: MiSeq

characteristic: title


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: subject id

text: Klebsiella pneumoniae


text: Mycobacterium tuberculosis

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis


characteristic: External Id

text: The University of Heidelberg

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

text: Protocols: The organs were dissected from 16 developmental stages (starting at e11 until P112). Until e13 the dissected ‘brain’ samples correspond to the whole brain, and from e14 onwards they correspond to the cerebral hemispheres (without the olfactory bulbs). Early ‘cerebellum’ samples correspond to the prepontine hindbrain-enriched brain region (until ~ e18) and from then onwards only to the cerebellum. RNA was extracted using the RNeasy protocol from QIAGEN. RNeasy Micro columns were used to extract RNA from small (< 5 mg) or fibrous samples and RNeasy Mini columns were used to extract RNA from larger samples. The tissues were homogenized in RLT buffer supplemented with 40 mM dithiothreitol (DTT) or QIAzol. The RNA-seq libraries were created using the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina).

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

characteristic: organism part

text: Rattus norvegicus

text: female

characteristic: sex

text: Holtzman SD

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: The University of Heidelberg

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: ArrayExpress

text: Norway rat

text: embryo

text: wild type genotype

text: Rattus norvegicus

characteristic: organism

text: Rattus norvegicus

text: heart

text: Rattus norvegicus

text: female

text: Holtzman SD

characteristic: title


text: The University of Heidelberg

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

text: Norway rat

characteristic: common name

text: embryo

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: brain

text: Rattus norvegicus

text: male

text: Holtzman SD


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The University of Heidelberg

text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Norway rat

characteristic: description

text: embryo

text: wild type genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: heart

text: Rattus norvegicus

text: male

text: Holtzman SD


text: The University of Heidelberg

text: public

text: ArrayExpress

text: Norway rat

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Rattus norvegicus

text: Rattus norvegicus

text: testis

characteristic: organism part

text: Rattus norvegicus

text: male

characteristic: sex

text: Holtzman SD

characteristic: strain