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E-MTAB-6603:Sample 63

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characteristic: INSDC first public

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text: public

text: E-MTAB-6603:Sample 63

tag: Namespace:Georgia State University, Department of Biology

unit: year

characteristic: age at diagnosis

unit: month

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: alive, death from other causes, death from unknown cause

characteristic: censoring for breast cancer-specific survival

text: human

text: Protocols: Pre-marked tumor areas in n=132 formalin-fixed paraffin-embedded (FFPE) malignant resection samples obtained prior to treatment from triple-negative breast cancer patients were obtained from the Nottingham Primary Breast Carcinoma series, selected based on the presence of sufficient tissue quantity for the analysis. The FFPE samples were deparaffinized with xylene, after which RNA was extracted using the Omega Mag-Bind XP FFPE RNA isolation kit (Omega, M2595-01) and the KingFisher Flex magnetic particle separator (ThermoFisher). Integrity was evaluated using the Agilent 2200 TapeStation instrument (Agilent Technologies, Santa Clara, CA). First-strand cDNA synthesis using random hexamers and reverse transcriptase was performed on ~100 ng RNA (25°C for 10 min, 42°C for 15 min, and 70°C for 15 min). Second-strand synthesis and RNA sequencing libraries were prepared per the manufacturer’s instructions using the TruSeq RNA Access library kit (Illumina, Inc., San Diego, CA, USA). RNA templates were removed and a second replacement strand was created by incorporating dUTP to generate double-stranded cDNA. Clean up was performed using Mag-Bind RxnPure Plus magnetic beads (Omega Bio-tek, Norcross, GA). cDNA 3’ ends were adenylated, and indexing adaptors were ligated. DNA fragments with adapter molecules on both ends were enriched using PCR (15 cycles of 98°C for 10 sec, 60°C for 30 sec, and 72°C for 30 sec). The Agilent 2200 TapeStation and QuantiFluor dsDNA System (Promega, Madiosn, WI) were used for library qualification and quantitation, respectively. 200 ng of each DNA library was combined to create a 4-plex pool of libraries, which were then mixed with capture probes specific to regions of interest, followed by hybridization (18 cycles of 1 min incubation, starting at 94°C, and then lowering by 2°C/cycle). Probes hybridized to the target regions were captured using streptavidin-coated magnetic beads. Enriched libraries were eluted and subjected to a second hybridization, then they were amplified by 10 cycles of PCR (98°C for 10 sec, 60°C for 30 sec, and 72°C for 30 sec). RxnPure magnetic beads were then used for clean-up. Final libraries were validated with the Agilent High Sensitivity D1000 ScreenTape on an Agilent 2200 Tapestation instrument.

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 63

characteristic: title

text: no chemotherapy

characteristic: treatment

characteristic: tumour size


E-MTAB-6603:Sample 56

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text: Georgia State University, Department of Biology

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text: E-MTAB-6603:Sample 56

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 56

text: no chemotherapy


E-MTAB-6603:Sample 85

text: public

text: E-MTAB-6603:Sample 85

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 85

characteristic: title

text: no chemotherapy

characteristic: treatment

characteristic: tumour size


E-MTAB-6603:Sample 67

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characteristic: INSDC center name

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characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

text: Homo sapiens

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text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 67

text: no chemotherapy


E-MTAB-6603:Sample 58

text: public

text: E-MTAB-6603:Sample 58

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

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characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

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text: neoplasm

characteristic: organism part

text: Homo sapiens

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characteristic: specimen with known storage state

text: Sample 58

characteristic: title

text: no chemotherapy

characteristic: treatment

characteristic: tumour size


E-MTAB-6603:Sample 52

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characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

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characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: Death from breast cancer

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

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text: neoplasm

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text: paraffin specimen

text: Sample 52

text: no chemotherapy


E-MTAB-6603:Sample 61

text: public

text: E-MTAB-6603:Sample 61

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

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characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 61

characteristic: title

characteristic: tumour size


E-MTAB-6603:Sample 68

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characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

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characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: Death from breast cancer

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characteristic: common name

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text: neoplasm

text: Homo sapiens

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text: Sample 68


E-MTAB-6603:Sample 75

text: public

text: E-MTAB-6603:Sample 75

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: description

text: triple-negative breast cancer

characteristic: disease

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characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 75

characteristic: title


E-MTAB-6603:Sample 86

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 86

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 86

characteristic: tumour size


E-MTAB-6603:Sample 83

text: public

text: E-MTAB-6603:Sample 83

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: High

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 83

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 62

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 62

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 62

characteristic: title

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 53

text: public

text: E-MTAB-6603:Sample 53

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: High

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 53

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 55

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 55

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 55

characteristic: title

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 13

text: public

text: E-MTAB-6603:Sample 13

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 13


E-MTAB-6603:Sample 21

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 21

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 21

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 82

text: public

text: E-MTAB-6603:Sample 82

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 82

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 33

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 33

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: High

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 33

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 65

text: public

text: E-MTAB-6603:Sample 65

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 65

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 66

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 66

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 66

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 54

text: public

text: E-MTAB-6603:Sample 54

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: High

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 54

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 35

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 35

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: High

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 35

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 64

text: public

text: E-MTAB-6603:Sample 64

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 64

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 23

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 23

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 19

text: public

text: E-MTAB-6603:Sample 19

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 19

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 49

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 49

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: High

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 49

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 20

text: public

text: E-MTAB-6603:Sample 20

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 20

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 80

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 80

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: High

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 80

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 1

text: public

text: E-MTAB-6603:Sample 1

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: High

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 1

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 12

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 12

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 28

text: public

text: E-MTAB-6603:Sample 28

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 28

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 18

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 18

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 18

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 25

text: public

text: E-MTAB-6603:Sample 25

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 25

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 22

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 22

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 22

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 84

text: public

text: E-MTAB-6603:Sample 84

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 84

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 27

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 27

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 11

text: public

text: E-MTAB-6603:Sample 11

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 11

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 70

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 70

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 70

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 87

text: public

text: E-MTAB-6603:Sample 87

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 87

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 37

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 37

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 37

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 60

text: public

text: E-MTAB-6603:Sample 60

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 60

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 4

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 4

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 76

text: public

text: E-MTAB-6603:Sample 76

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 76

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 38

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 38

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: High

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 38

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 14

text: public

text: E-MTAB-6603:Sample 14

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 14

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 39

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 39

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 39

characteristic: title

text: no chemotherapy

characteristic: treatment


E-MTAB-6603:Sample 40

text: public

text: E-MTAB-6603:Sample 40

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 40

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 17

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 17

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 17

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 3

text: public

text: E-MTAB-6603:Sample 3

text: ArrayExpress

text: High

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 3

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 71

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 71

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 71

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 16

text: public

text: E-MTAB-6603:Sample 16

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 16

text: no chemotherapy

characteristic: tumour size


E-MTAB-6603:Sample 41

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 41

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 41

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 42

text: public

text: E-MTAB-6603:Sample 42

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 42

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 31

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: Death from breast cancer

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 31

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 43

text: public

text: E-MTAB-6603:Sample 43

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 43

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 51

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 51

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 51

characteristic: title

text: adjuvant CMF received

characteristic: treatment


E-MTAB-6603:Sample 44

text: public

text: E-MTAB-6603:Sample 44

text: ArrayExpress

text: Low

characteristic: cell cycle traverse rate breast cancer-specific survival

text: Low

characteristic: cell cycle traverse rate mean

text: Death from breast cancer

characteristic: censoring for breast cancer-specific survival

text: human

characteristic: common name

characteristic: description

text: triple-negative breast cancer

characteristic: disease

characteristic: individual

characteristic: ki67 percentage

characteristic: lymph node stage

characteristic: mitosis from grade

characteristic: mitotic index

characteristic: nottingham grade

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: neoplasm

characteristic: organism part

text: Homo sapiens

text: paraffin specimen

characteristic: specimen with known storage state

text: Sample 44

text: adjuvant CMF received

characteristic: tumour size


E-MTAB-6603:Sample 36

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-6603:Sample 36

characteristic: Submitter Id

characteristic: age at diagnosis

characteristic: breast cancer-specific survival in months

text: ArrayExpress

characteristic: broker name

characteristic: cell cycle traverse rate

text: Low

text: Low

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: neoplasm

text: Homo sapiens

text: paraffin specimen

text: Sample 36

characteristic: title

text: adjuvant CMF received

characteristic: treatment