text: CORNELL

characteristic: INSDC first public

text: public

text: black-throated finch

text: Durham Dam

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: female

text: Sample BAM file


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CORNELL

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: black-throated finch

characteristic: common name

text: Durham Dam

characteristic: description

text: Australia - Queensland

characteristic: geographic location (region and locality)

text: Poephila cincta

characteristic: organism

text: Poephila cincta

text: male

characteristic: sex

text: Sample BAM file

characteristic: title


text: CORNELL

characteristic: INSDC first public

text: public

text: black-throated finch

text: Kalpowar

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: male

text: Sample BAM file


characteristic: ENA-CHECKLIST

text: CORNELL

text: public

text: black-throated finch

text: Kowanyama

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: male

text: Sample BAM file


characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

text: black-throated finch

text: Kowanyama

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: female

text: Sample BAM file


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: black-throated finch

text: Inkerman Station

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: female

text: Sample BAM file


characteristic: External Id

text: CORNELL

text: public

text: black-throated finch

text: Inkerman Station

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: male

text: Sample BAM file


text: CORNELL

characteristic: INSDC center name

text: public

text: black-throated finch

text: Wrotham Park

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: male

text: Sample BAM file


text: CORNELL

characteristic: INSDC last update

text: public

text: black-throated finch

text: Wrotham Park

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: female

text: Sample BAM file


text: CORNELL

text: public

characteristic: INSDC status

text: black-throated finch

text: Adani Dam

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: male

text: Sample BAM file


text: CORNELL

text: public

characteristic: SRA accession

text: black-throated finch

text: Adani Dam

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: female

text: Sample BAM file


text: CORNELL

text: public

characteristic: Submitter Id

text: black-throated finch

text: Fords Dam

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: male

text: Sample BAM file


text: CORNELL

text: public

characteristic: collection date

text: black-throated finch

text: Fords Dam

text: Australia - Queensland

text: Poephila cincta

text: Poephila cincta

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

characteristic: common name

text: Chidna Station

text: Australia - Queensland

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Chidna Station

characteristic: description

text: Australia - Queensland

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Coolibah Station

text: Australia - Northern Territory

characteristic: geographic location (region and locality)

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Coolibah Station

text: Australia - Northern Territory

text: Poephila acuticauda

characteristic: organism

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Coolibah Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Ellenbrae Station

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: male

characteristic: sex

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Ellenbrae Station

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file

characteristic: title


text: CORNELL

characteristic: INSDC first public

text: public

text: long-tailed finch

text: Koolpinyah Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


characteristic: ENA-CHECKLIST

text: CORNELL

text: public

text: long-tailed finch

text: Koolpinyah Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

text: long-tailed finch

text: Kidman Springs Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: long-tailed finch

text: Kidman Springs Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


characteristic: External Id

text: CORNELL

text: public

text: long-tailed finch

text: Liechardt Station

text: Australia - Queensland

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

characteristic: INSDC center name

text: public

text: long-tailed finch

text: Liechardt Station

text: Australia - Queensland

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

characteristic: INSDC last update

text: public

text: long-tailed finch

text: MacArthur River

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

characteristic: INSDC status

text: long-tailed finch

text: MacArthur River

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

characteristic: SRA accession

text: long-tailed finch

text: Wyndham

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

characteristic: Submitter Id

text: long-tailed finch

text: Mt. House Station

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

characteristic: collection date

text: long-tailed finch

text: Mt. House Station

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

characteristic: common name

text: Moolooloo Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Moolooloo Station

characteristic: description

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Maryfield Station

text: Australia - Northern Territory

characteristic: geographic location (region and locality)

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Maryfield Station

text: Australia - Northern Territory

text: Poephila acuticauda

characteristic: organism

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Nelson Station

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: male

characteristic: sex

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Nelson Station

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file

characteristic: title


text: CORNELL

characteristic: INSDC first public

text: public

text: long-tailed finch

text: Newry Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


characteristic: ENA-CHECKLIST

text: CORNELL

text: public

text: long-tailed finch

text: Newry Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


characteristic: ENA-FIRST-PUBLIC

text: CORNELL

text: public

text: long-tailed finch

text: Newry Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: Sample BAM file


characteristic: ENA-LAST-UPDATE

text: CORNELL

text: public

text: long-tailed finch

text: October Creek Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


characteristic: External Id

text: CORNELL

text: public

text: long-tailed finch

text: October Creek Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

characteristic: INSDC center name

text: public

text: long-tailed finch

text: October Creek Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: Sample BAM file


text: CORNELL

characteristic: INSDC last update

text: public

text: long-tailed finch

text: Stapleton Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

characteristic: INSDC status

text: long-tailed finch

text: Stapleton Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

characteristic: SRA accession

text: long-tailed finch

text: Tipperary Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

characteristic: Submitter Id

text: long-tailed finch

text: Tipperary Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

characteristic: collection date

text: long-tailed finch

text: Tipperary Station

text: Australia - Northern Territory

text: Poephila acuticauda

text: Poephila acuticauda

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

characteristic: common name

text: Wyndham

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: male

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Wyndham

characteristic: description

text: Australia - Western Australia

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Willeroo Station

text: Australia - Northern Territory

characteristic: geographic location (region and locality)

text: Poephila acuticauda

text: Poephila acuticauda

text: female

text: Sample BAM file


text: CORNELL

text: public

text: long-tailed finch

text: Willeroo Station

text: Australia - Northern Territory

text: Poephila acuticauda

characteristic: organism

text: Poephila acuticauda

text: male

text: Sample BAM file


text: Beijing Chao-Yang Hospital

text: public

tag: Namespace:Beijing Chao-Yang Hospital

text: human-gut

characteristic: environment (biome)

text: human-gut

characteristic: environment (feature)

text: human-gut

characteristic: environment (material)

text: China

characteristic: geographic location (country and/or sea)

text: 39.9 N

unit: DD

characteristic: geographic location (latitude)

text: 116.3 E

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation

characteristic: project name

text: metagenome

text: presequencing

characteristic: sequencing method

text: human gut


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tromso

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Tromso

text: Aliivibrio salmonicida

text: RNAseq litR mutant OD 0.3

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238

text: RNA seq A. salmonicida litR mutants

characteristic: title


text: University of Tromso

text: public

characteristic: Submitter Id

text: Aliivibrio salmonicida

characteristic: common name

text: RNAseq litR mutant OD 1.2

characteristic: description

text: Aliivibrio salmonicida LFI1238

characteristic: organism

text: Aliivibrio salmonicida LFI1238

text: RNA seq A. salmonicida litR mutants


text: Canis lupus familiaris

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

characteristic: subject id


text: UNIBE-IG

text: public

text: dog

text: Mixed breed - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Mixed breed


text: UNIBE-IG

text: public

text: dog

text: Miniature Bull terrier - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Miniature Bull terrier


text: UNIBE-IG

text: public

text: dog

text: Shetland Sheepdog - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Shetland Sheepdog


text: UNIBE-IG

text: public

text: dog

text: Border Collie - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Border Collie


text: UNIBE-IG

text: public

text: dog

text: mixed breed - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: mixed breed


text: UNIBE-IG

text: public

text: dog

text: Golden Retriever - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Golden Retriever


text: UNIBE-IG

text: public

text: dog

text: Jack Russell Terrier - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Jack Russell Terrier


text: UNIBE-IG

text: public

text: dog

text: Collie - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Collie


text: UNIBE-IG

text: public

text: dog

text: American Staffordshire Terrier - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: American Staffordshire Terrier


text: UNIBE-IG

text: public

text: dog

text: Hovawart - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Hovawart


text: UNIBE-IG

text: public

text: dog

text: Lagotto Romagnolo - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Lagotto Romagnolo


text: UNIBE-IG

text: public

text: dog

text: Curly Coated Retriever - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Curly Coated Retriever


text: UNIBE-IG

text: public

text: dog

text: Curly Coated Retriever - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Curly Coated Retriever


text: UNIBE-IG

text: public

text: dog

text: Greyhound - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Greyhound


text: UNIBE-IG

text: public

text: dog

text: Australian Shepherd - female

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Australian Shepherd


text: UNIBE-IG

text: public

text: dog

text: Leonberger - male

text: Canis lupus familiaris

text: Canis lupus familiaris

text: Leonberger


text: University of Tromso

text: public

text: Aliivibrio salmonicida

text: RNAseq wt OD 0.3

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238

text: RNA seq A. salmonicida litR and rpoQ mutants


text: University of Tromso

text: public

text: Aliivibrio salmonicida

text: RNAseq wt OD 1.2

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238


text: University of Tromso

text: public

text: Aliivibrio salmonicida

text: RNAseq rpoq mutant OD 0.3

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238


text: University of Tromso

text: public

text: Aliivibrio salmonicida

text: RNAseq rpoq mutant OD 1.2

text: Aliivibrio salmonicida LFI1238

text: Aliivibrio salmonicida LFI1238


text: public

tag: Namespace:Department of Biosciences and Nutrition, Karolinska Institutet

text: ArrayExpress

characteristic: broker name

text: lt-NES AF22

characteristic: cell line

text: neuronal stem cell

characteristic: cell type

text: human

text: Protocols: The lt-NES cells (line AF22, derived from iPSCs generated from reprogrammed adult dermal fibroblasts; https://doi.org/10.1371/journal.pone.0029597) were cultured in DMEM/F12+Glutamax (Life Technologies) supplemented with Penicillin (100 U/ml), Streptomycin (100 μg/ml), N2 (1:100, life technologies), B27 (1:1000, Life Technologies) and containing FGF (10 ng/ml; Life Technologies) and EGF (10 ng/ml; Peprotech) in a 5% CO2 incubator. Half of the medium was changed daily and cells were passaged at a ratio of 1:3 upon confluency. Plates were pre-coated using poly-ornithine (0, 1 mg/ml; Sigma) and laminin (2 μg/ml; Sigma, L2020). For spontaneous differentiation, cells were initially plated in complete medium for two days, then medium was changed to medium without growth factors FGF and EGF. After one week, medium was changed to a 1:1 mixture of DMEM/F12+Glutamax and Neurobasal (life technologies) containing N2 (1:200) and B27 (1:100). During differentiation, half of the medium was changed every two to three days containing laminin (1:1000). RNA was extracted using NucleoSpin RNA kit or NucleoSpin Triprep kit (Macherey-Nagel) according to the supplier’s instructions. RNA concentration was measured using Nanodrop ND-1000 and Qubit (Thermo Fisher Scientific). RNA integrity was analysed using Bioanalyzer RNA pico kit (Agilent Technologies). Three biological replicates were collected for each time point in two independent experiments (except for day 14 in experiment 1). Transcriptome analysis was performed by the STRT RNA-seq method (PMID: 22481528) with minor modifications (PMID: 26874359). Briefly, ten nanogram of high-quality total RNA was converted into cDNA and amplified to form an Illumina-compatible library. ERCC spike-in mixture was diluted 1,000x with water and 1 µl was added to reverse transcriptase master mix before cDNA synthesis. In total, 25 PCR cycles were used; 15 for first, full cDNA amplification and 10 to amplify and introduce sequencing-required motifs.

text: adult

characteristic: developmental stage

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Biosciences and Nutrition, Karolinska Institutet

characteristic: INSDC center name

text: public

text: ArrayExpress

text: lt-NES AF22

text: neuronal stem cell

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: lt-NES AF22

text: neuron

text: human

text: adult

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: title


text: Bioinformatics Lab, Innovation Center

text: public

tag: Namespace:Bioinformatics Lab, Innovation Center

characteristic: Submitter Id

characteristic: collection date

text: human

characteristic: common name

text: The present study attempts to catalogue the taxonomic diversity of gut microbiomes sampled from an urban cohort from Ahmedabad city in Western India. The uploaded sequence data corresponds to 160 stool samples collected from 80 healthy individuals at two time-points, 60 days apart.

characteristic: description

text: Bacterial microbiome

characteristic: environment (biome)

text: Metagenome

characteristic: environment (feature)

text: faecal matter

characteristic: environment (material)

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Homo sapiens

characteristic: organism

text: gut metagenome

characteristic: project name

text: Homo sapiens

text: Illumina

characteristic: sequencing method

text: A snapshot of gut microbiota of an adult urban population from Western region of India.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:National Taiwan University, Taipei, Taiwan

text: ArrayExpress

characteristic: broker name

text: rice

text: Nipponbare

characteristic: cultivar

text: Protocols: Panicles which were in the panicle differentiation stage were microscopically isolated. WT and GR2-Ri rice seeds were sterilized with 2.5 % sodium hypochlorite for 15 min and washed extensively with distilled water. These seeds were germinated in Petri dishes with wetted filter papers at 37 C in the dark. After 48 h incubation, uniformly germinated seeds were selected and cultivated in a beaker containing Kimura B nutrient solution. The hydroponically cultivated seedlings were grown in a Phytotron (Agricultural Experimental Station, National Taiwan University, Taipei) with natural sunlight. Total RNA was isolated from microscopically isolated panicles (panicle at differentiation stage) using the TRIZOL reagent (Invitrogen), according to the supplier’s recommendations. A total amount of 3 μg RNA per sample was used as input material for the RNA sample preparations. Libraries were constructed using the NEBNext Ultra RNA Library Prep Kit for Illumina

text: inflorescence development stage

characteristic: developmental stage

characteristic: genotype

text: Oryza sativa

text: Oryza sativa

text: panicle inflorescence

characteristic: organism part

text: GR2 knockdown

characteristic: phenotype

text: Oryza sativa


text: National Taiwan University, Taipei, Taiwan

text: public

characteristic: Submitter Id

text: ArrayExpress

text: rice

characteristic: common name

text: Nipponbare

characteristic: description

text: inflorescence development stage

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: panicle inflorescence

text: GR2 knockdown

text: Oryza sativa

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: rice

text: Nipponbare

text: inflorescence development stage

text: wild type genotype

text: Oryza sativa

text: Oryza sativa

text: panicle inflorescence

text: wild type

text: Oryza sativa


text: Canis lupus familiaris

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: dog

text: Canis lupus familiaris

text: Canis lupus familiaris

characteristic: subject id


text: Homo sapiens

text: SC

text: public

characteristic: SRA accession

text: human

text: Homo sapiens

text: Homo sapiens


text: UMC Utrecht

text: public

tag: Namespace:UMC Utrecht

text: Netherlands

characteristic: isolation site

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

characteristic: year isolated


text: NEWCASTLE UNIVERSITY, UK

text: public

tag: Namespace:NEWCASTLE UNIVERSITY, UK

characteristic: Submitter Id

text: human

characteristic: common name

text: VALIDATION COHORT- MSI HIGH. DNA from FFPE treated colorectal cancer tissue sample was extracted to carry out validation of the single molecule molecular inversion probe (smMIP) approach for microsatellite instability testing. Specifically, the analysis was aimed to validate the sensitivity and specificity of the MSI calls made by this assay in comparision with fragment length analysis and immunohistochemistry techniques. Custom library prep and capture was carried out using smMIPs and the pooled amplicons were sequenced on Illumina MiSeq.

text: Homo sapiens

text: Homo sapiens


text: NEWCASTLE UNIVERSITY, UK

text: public

text: human

text: VALIDATION COHORT- MSS. DNA from FFPE treated colorectal cancer tissue sample was extracted to carry out validation of the single molecule molecular inversion probe (smMIP) approach for microsatellite instability testing. Specifically, the analysis was aimed to validate the sensitivity and specificity of the MSI calls made by this assay in comparision with fragment length analysis and immunohistochemistry techniques. Custom library prep and capture was carried out using smMIPs and the pooled amplicons were sequenced on Illumina MiSeq.

characteristic: description

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: UCSDMI

text: public

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: Fighting cage

text: 2017-09-26 11:00

text: Mouse 85 baseline stool collection 1 of 20

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: 10 week IHC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: Started changing air cages 4x/wk 10/26/2017

text: 2017-10-27 11:00

text: Mouse 85 stool collection 10 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

characteristic: timepoint

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-10-31 11:00

text: Mouse 85 stool collection 11 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: title

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-03 11:00

text: Mouse 85 stool collection 12 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

characteristic: timepoint

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-07 11:00

text: Mouse 85 stool collection 13 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-07 11:00

text: Mouse 85 stool collection 14 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: On shelf

text: 2017-11-14 11:00

text: Mouse 85 stool collection 15 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-17 11:00

text: Mouse 85 stool collection 16 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: On shelf

text: 2017-11-21 11:00

text: Mouse 85 stool collection 17 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-24 11:00

text: Mouse 85 stool collection 18 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-28 11:00

text: Mouse 85 stool collection 19 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-09-29 11:00

text: Mouse 85 stool collection 2 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-12-01 10:00

text: Mouse 85 stool collection 20 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: Put Nyla bones in cage

text: 2017-10-03 11:00

text: Mouse 85 stool collection 3 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

characteristic: timepoint

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: 2017-10-06 11:00

text: Mouse 85 stool collection 4 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: title

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-10 11:00

text: Mouse 85 stool collection 5 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: 2017-10-13 11:00

text: Mouse 85 stool collection 6 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-17 11:00

text: Mouse 85 stool collection 7 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: Orit only for sample collection

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

characteristic: timepoint

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: 2017-10-20 11:00

text: Mouse 85 stool collection 8 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: title

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-24 11:00

text: Mouse 85 stool collection 9 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 85

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

characteristic: timepoint

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Not provided

text: On shelf

text: 2017-12-03 11:00

text: Mouse 85 tooth collection at terminal point

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal corpus

text: urban biome

text: animal-associated habitat

text: host-associated

text: organic material

text: 10 weeks

text: Air

text: One tube for microbiome and metabolome

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:oral cavity

characteristic: host body habitat

text: UBERON:tooth

characteristic: host body product

text: UBERON:mouth

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 85

characteristic: host subject id

characteristic: host taxid

text: Not provided

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: oral metagenome

text: UCSDMI

text: TRUE

text: tooth

characteristic: sample type

text: oral metagenome

text: male

characteristic: sex

text: Not provided

characteristic: title

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: Fighting cage

text: 2017-09-26 11:00

text: Mouse 86 baseline stool collection 1 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: 2017-10-27 11:00

text: Mouse 86 stool collection 10 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-31 11:00

text: Mouse 86 stool collection 11 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-03 11:00

text: Mouse 86 stool collection 12 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-07 11:00

text: Mouse 86 stool collection 13 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-07 11:00

text: Mouse 86 stool collection 14 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-14 11:00

text: Mouse 86 stool collection 15 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-17 11:00

text: Mouse 86 stool collection 16 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-21 11:00

text: Mouse 86 stool collection 17 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

characteristic: timepoint

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: 2017-11-24 11:00

text: Mouse 86 stool collection 18 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: title

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-28 11:00

text: Mouse 86 stool collection 19 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: 2017-09-29 11:00

text: Mouse 86 stool collection 2 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-12-01 10:00

text: Mouse 86 stool collection 20 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: On shelf

text: Put Nyla bones in cage

text: 2017-10-03 11:00

text: Mouse 86 stool collection 3 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-06 11:00

text: Mouse 86 stool collection 4 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-10-10 11:00

text: Mouse 86 stool collection 5 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-13 11:00

text: Mouse 86 stool collection 6 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-10-17 11:00

text: Mouse 86 stool collection 7 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: Orit only for sample collection

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-20 11:00

text: Mouse 86 stool collection 8 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 86

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-10-24 11:00

text: Mouse 86 stool collection 9 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 86

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: Not provided

text: On shelf

text: 2017-12-03 11:00

text: Mouse 86 tooth collection at terminal point

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal corpus

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: organic material

text: 10 weeks

text: Air

characteristic: exposure type

text: One tube for microbiome and metabolome

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:oral cavity

text: UBERON:tooth

text: UBERON:mouth

text: Adult

text: Mus musculus

text: Mouse 86

text: Not provided

text: weeks

text: g

text: oral metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: tooth

text: oral metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: Fighting cage

text: 2017-09-26 11:00

text: Mouse 87 baseline stool collection 1 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 87

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-10-24 11:00

text: Mouse 87 stool collection 10 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 87

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-10-31 11:00

text: Mouse 87 stool collection 11 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 87

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-03 11:00

text: Mouse 87 stool collection 12 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 87

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-07 11:00

text: Mouse 87 stool collection 13 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 87

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-07 11:00

text: Mouse 87 stool collection 14 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 87

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-14 11:00

text: Mouse 87 stool collection 15 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 87

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-17 11:00

text: Mouse 87 stool collection 16 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: adult

text: Mus musculus

text: Mouse 87

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: 10 week IHC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-21 11:00

text: Mouse 87 stool collection 17 of 20

text: Regular chow

text: TRUE

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: Adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 87

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: Not provided

characteristic: timepoint

characteristic: title

text: 10 week IHC

text: Missing: Not provided

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage number

text: On shelf

text: 2017-11-24 11:00

text: Mouse 87 stool collection 18 of 20

characteristic: description

text: Regular chow

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: Host-asssociated

text: Animal-associated

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: 10 weeks

text: Air

characteristic: exposure type

text: ApoE KO

characteristic: genotype

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Adult

text: Mus musculus

text: Mouse 87

text: weeks

text: g

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: feces

text: mouse gut metagenome

text: male

text: Not provided

text: 10 week IHC

text: Missing: Not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: On shelf

text: 2017-11-28 11:00

text: Mouse 87 stool collection 19 of 20

text: Regular chow

text: TRUE

text: Host-associated

text: Animal-associated

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: 10 weeks

text: Air

text: ApoE KO

text: USA:CA:San Diego

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

text: Mouse 87

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: weeks

text: g

characteristic: latitude

characteristic: longitude

characteristic: mouse number

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: title

text: 10 week IHC