text: LIMM

text: public

characteristic: age

text: human

characteristic: common name

text: Bowel cancer tool screening card

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Male

characteristic: sex

text: Stool screening card


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LIMM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: Bowel cancer tool screening card

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Female

text: Stool screening card

characteristic: title


text: cancer

text: LIMM

text: public

text: human

text: Bowel cancer tool screening card

text: Homo sapiens

text: Homo sapiens

text: Male

text: Stool screening card


text: cancer

text: LIMM

text: public

text: human

text: Bowel cancer tool screening card

text: Homo sapiens

text: Homo sapiens

text: Female

text: Stool screening card


text: other

text: LIMM

text: public

text: human

text: Bowel cancer tool screening card

text: Homo sapiens

text: Homo sapiens

text: Male

text: Stool screening card


text: other

text: LIMM

text: public

text: human

text: Bowel cancer tool screening card

text: Homo sapiens

text: Homo sapiens

text: Female

text: Stool screening card


text: UL-LS

text: public

characteristic: collection date

text: Organo-sulfur mobilizing microbes in a microcosm with organo-S enriched mesh cores

text: soil microcosm

characteristic: environment (biome)

text: grassland

characteristic: environment (feature)

text: grasses

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: bacterium

text: Desulfurization

characteristic: project name

text: bacterium

text: MiSeq

characteristic: sequencing method

text: soil

characteristic: soil environmental package

text: Organo-sulfur mobilizing microbes


E-MTAB-8917:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-8917:Sample 1

tag: Namespace:Discovery and Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds.

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Samples were obtained from pectoralis major biopsies of patients underwent pacemaker implantation. Isolation of RNA from human biopsies was carried out in an RNase-free environment. RNA was extracted using phenol-chloroform and in-house protocols. Libraries preparations were performed using TruSeq library prep.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

characteristic: organism part

text: pectoralis major

characteristic: sampling site

text: Homo sapiens

text: Sample 1


E-MTAB-8917:Sample 2

text: Discovery and Translational Science Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds.

text: public

text: E-MTAB-8917:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skeletal muscle tissue

text: pectoralis major

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-8917:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-8917:Sample 3

text: ArrayExpress

text: human

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: pectoralis major

text: Homo sapiens

text: Sample 3


E-MTAB-8917:Sample 4

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-8917:Sample 4

text: ArrayExpress

text: human

text: adult

text: type II diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: pectoralis major

text: Homo sapiens

text: Sample 4


E-MTAB-8917:Sample 5

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-8917:Sample 5

text: ArrayExpress

text: human

text: adult

text: type II diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: pectoralis major

text: Homo sapiens

text: Sample 5


E-MTAB-8917:Sample 6

text: public

text: E-MTAB-8917:Sample 6

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: type II diabetes mellitus

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

text: pectoralis major

text: Homo sapiens

text: Sample 6


E-MTAB-8917:Sample 7

text: public

text: E-MTAB-8917:Sample 7

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: type II diabetes mellitus

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: skeletal muscle tissue

characteristic: organism part

text: pectoralis major

text: Homo sapiens

text: Sample 7


text: TONGJI

text: public

characteristic: Submitter Id

text: biological activated carbon

text: metagenome

characteristic: organism

text: deep layer

characteristic: sample site

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TONGJI

text: public

text: biological activated carbon

text: metagenome

text: middle layer

text: metagenome

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TONGJI

characteristic: INSDC center name

text: public

text: biological activated carbon

text: metagenome

text: shallow layer

text: metagenome


text: TONGJI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: water sample

text: metagenome

text: raw water

text: metagenome


text: TONGJI

text: public

characteristic: SRA accession

text: water sample

text: metagenome

text: BAC influent

text: metagenome


text: TONGJI

text: public

text: water sample

characteristic: description

text: metagenome

text: BAC effluent

text: metagenome


text: TONGJI

text: public

text: water sample

text: metagenome

text: finished water

text: metagenome


text: public

tag: Namespace:Department of Biosciences and Nutrition, Karolinska Institutet

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: CSTB-deficient mice (Cstb−/−) were obtained from The Jackson Laboratory (129-Cstbtm1Rm/SvJ; stock no. #003486). Wild-type mice of the same age and background were used as controls. The research protocols were approved by the Animal Ethics Committee of the State Provincial Office of Southern Finland (decision ESAVI/10765/04.10.07/2015 ).The ganglionic eminences (MGE+LGE region) of E13.5 mouse embryos were dissected and mechanically dissociated to obtain a single cell suspension. Cells were plated onto 60mm non-treated culture dishes at a density of 2x10^5 cells/ml in 5ml maintenance medium, consisting on Dulbecco's modified Eagle's media (DMEM; Lonza) and F12 (Gibco) 3:1 supplemented with 2% B-27 , EGF (Millipore) at 20 ng/ml and Murine FGF-basic (PeproTech Inc.) at 40 ng/ml (Ciccolini and Svendsen 1998). After 6 days in culture at 37°C, ripe primary neurospheres were dissociated with TrypLE Express Enzyme (Gibco) and sub-cultured in maintenance media at a density of 6x10^4 cells/ml. After 4 days, ripe secondary neurospheres were either dissociated and sub-cultured or plated for differentiation. For differentiation, cells were plated onto poly-ornithine-coated surfaces at a density of 3x10^4 cells/cm2 in differentiation media (Standard: Neurobasal media (Gibco) supplemented with 2% B-27 and 2% Fetal bovine serum (FBS; Biowest). Single secondary neurospheres of ≈200 μm of diameter (≈400 cells) were manually collected and either lysed directly (Day 0 samples) or plated for differentiation in round-bottom 96-well plates and lysed 1, 5 or 12 days after differentiation. Lysis buffer contained Tris pH7, 10mM EDTA, Proteinase K and 1%w/v SDS. Cell lysis was followed by 30-minute incubation at 50°C and RNA purification through RNA clean & concentrator kit (Zymo). Each experimental situation was represented by six colonies derived from three different embryo pools. 2 µl of lysate was used to make 48-plex RNA-seq libraries, which were prepared using modified STRT method with unique molecular identifiers (UMIs). (Islam et al. 2011 and Islam et al. 2014). In order to remove amplification artefacts at high copy numbers, we have used longer UMIs of 8 bp.

text: neurophere

characteristic: developmental stage

text: embryonic day 13.5

unit: day

text: Cstb knockout

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: ganglionic eminence

characteristic: replicate

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Biosciences and Nutrition, Karolinska Institutet

text: public

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: neurophere

text: embryonic day 13.5

text: Cstb knockout

text: Mus musculus

characteristic: organism

text: Mus musculus

text: ganglionic eminence

characteristic: organism part

text: Mus musculus

text: mixed

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: neurophere

text: embryonic day 13.5

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: ganglionic eminence

text: Mus musculus

text: mixed


text: public

characteristic: SRA accession

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: neurosphere in differentiation medium

characteristic: developmental stage

text: embryonic day 13.5

text: Cstb knockout

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: ganglionic eminence

text: Mus musculus

text: mixed


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: house mouse

text: neurosphere in differentiation medium

text: embryonic day 13.5

text: wild type genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: ganglionic eminence

characteristic: replicate

text: Mus musculus

text: mixed

characteristic: sex

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

tag: Namespace:CENTER FOR GENOMIC REGULATION (CRG)

characteristic: Submitter Id

text: RNA sequencing of WT and snKOs (Sn3, Sn34, Sn36) multiplexed with DeePlexiCon 1.0 barcodes

text: Saccharomyces cerevisiae BY4741

characteristic: organism

text: Saccharomyces cerevisiae BY4741

text: WT_and_SNKOs_rep1 RNA

characteristic: title


Sn3KO rep2

text: CENTER FOR GENOMIC REGULATION (CRG)

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sn3KO rep2

text: RNA Sequencing of Sn3KO strain in Flongle

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: Sn3KO rep2 RNA


Sn34KO rep2

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Sn34KO rep2

text: RNA Sequencing of Sn34KO strain in Flongle

characteristic: description

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: Sn34KO rep2 RNA


Sn36KO rep2

characteristic: ENA-CHECKLIST

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: Sn36KO rep2

text: RNA Sequencing of Sn36KO strain in Flongle

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: Sn36KO rep2 RNA


WT rep2

characteristic: ENA-FIRST-PUBLIC

text: CENTER FOR GENOMIC REGULATION (CRG)

text: public

text: WT rep2

text: RNA Sequencing of WT strain in Flongle

text: Saccharomyces cerevisiae BY4741

text: Saccharomyces cerevisiae BY4741

text: WT rep2 RNA


text: UNIVERSITY OF ZURICH

text: public

tag: Namespace:UNIVERSITY OF ZURICH

text: cortical VIP interneurons

characteristic: cell type

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus


text: IPK-Gatersleben

text: public

text: bread wheat

text: GBS data of hexaploid wheat nulli-tetrasomic line

text: Triticum aestivum

text: Triticum aestivum


text: IPK-Gatersleben

text: public

text: bread wheat

text: GBS data of hexaploid wheat ditelosomic line

text: Triticum aestivum

text: Triticum aestivum


text: ETH ZURICH

text: public

tag: Namespace:ETH ZURICH

text: Dionaea muscipula

text: Dionaea muscipula


text: ETH ZURICH

text: public

text: Drosera binata

text: Drosera binata


text: ETH ZURICH

text: public

text: Nepenthes alata

text: Nepenthes alata


text: ETH ZURICH

text: public

text: a control library made from water template instead of DNA extract

text: unidentified

text: unidentified


text: ETH ZURICH

text: public

text: Cape leadwort

text: Plumbago auriculata

text: Plumbago auriculata


text: ETH ZURICH

text: public

text: Fallopia convolvulus

text: Fallopia convolvulus


text: ETH ZURICH

text: public

text: Nepenthes distillatoria

text: Nepenthes distillatoria


text: ETH ZURICH

text: public

text: Nepenthes khasiana

text: Nepenthes khasiana


text: ETH ZURICH

text: public

text: Nepenthes macfarlanei

text: Nepenthes macfarlanei


text: ETH ZURICH

text: public

text: Nepenthes madagascariensis

text: Nepenthes madagascariensis


text: ETH ZURICH

text: public

text: Nepenthes pervillei

text: Nepenthes pervillei


text: ETH ZURICH

text: public

text: Nepenthes tobaica

text: Nepenthes tobaica


text: ETH ZURICH

text: public

text: Nepenthes tomoriana

text: Nepenthes tomoriana


text: ETH ZURICH

text: public

text: Nepenthes veitchii

text: Nepenthes veitchii


text: ETH ZURICH

text: public

text: Nepenthes ventricosa

text: Nepenthes ventricosa


text: ETH ZURICH

text: public

text: Nepenthes adnata

text: Nepenthes adnata


text: ETH ZURICH

text: public

text: Nepenthes albomarginata

text: Nepenthes albomarginata


text: ETH ZURICH

text: public

text: sample_albomarginata_Peninsular_Malaysia

text: Nepenthes albomarginata

text: Nepenthes albomarginata


text: ETH ZURICH

text: public

text: Nepenthes ampullaria

text: Nepenthes ampullaria


text: ETH ZURICH

text: public

text: Nepenthes aristolochioides

text: Nepenthes aristolochioides


text: ETH ZURICH

text: public

text: Nepenthes bellii

text: Nepenthes bellii


text: ETH ZURICH

text: public

text: Nepenthes bongso

text: Nepenthes bongso


text: ETH ZURICH

text: public

text: Nepenthes boschiana

text: Nepenthes boschiana


text: ETH ZURICH

text: public

text: Nepenthes burbidgeae

text: Nepenthes burbidgeae


text: ETH ZURICH

text: public

text: Nepenthes clipeata

text: Nepenthes clipeata


text: ETH ZURICH

text: public

text: Nepenthes densiflora

text: Nepenthes densiflora


text: ETH ZURICH

text: public

text: Nepenthes diatas

text: Nepenthes diatas


text: ETH ZURICH

text: public

text: Nepenthes dubia

text: Nepenthes dubia


text: ETH ZURICH

text: public

text: Nepenthes ephippiata

text: Nepenthes ephippiata


text: ETH ZURICH

text: public

text: Nepenthes eustachya

text: Nepenthes eustachya


text: ETH ZURICH

text: public

text: Nepenthes eymae

text: Nepenthes eymae


text: ETH ZURICH

text: public

text: Nepenthes faizaliana

text: Nepenthes faizaliana


text: ETH ZURICH

text: public

text: Nepenthes glabrata

text: Nepenthes glabrata


text: ETH ZURICH

text: public

text: Nepenthes gracilis

text: Nepenthes gracilis


text: ETH ZURICH

text: public

text: Nepenthes gymnamphora

text: Nepenthes gymnamphora


text: ETH ZURICH

text: public

text: Nepenthes hamata

text: Nepenthes hamata


text: ETH ZURICH

text: public

text: Nepenthes hirsuta

text: Nepenthes hirsuta


text: ETH ZURICH

text: public

text: Nepenthes inermis

text: Nepenthes inermis


text: ETH ZURICH

text: public

text: Nepenthes insignis

text: Nepenthes insignis


text: ETH ZURICH

text: public

text: Nepenthes lamii

text: Nepenthes lamii


text: ETH ZURICH

text: public

text: Nepenthes lavicola

text: Nepenthes lavicola


text: ETH ZURICH

text: public

text: Nepenthes longifolia

text: Nepenthes longifolia


text: ETH ZURICH

text: public

text: Nepenthes lowii

text: Nepenthes lowii


text: ETH ZURICH

text: public

text: Nepenthes macrophylla

text: Nepenthes macrophylla


text: ETH ZURICH

text: public

text: Nepenthes macrovulgaris

text: Nepenthes macrovulgaris


text: ETH ZURICH

text: public

text: Nepenthes mapuluensis

text: Nepenthes mapuluensis


text: ETH ZURICH

text: public

text: Nepenthes maxima

text: Nepenthes maxima


text: ETH ZURICH

text: public

text: Nepenthes merrilliana

text: Nepenthes merrilliana


text: ETH ZURICH

text: public

text: Nepenthes mikei

text: Nepenthes mikei


text: ETH ZURICH

text: public

text: Nepenthes mirabilis

text: Nepenthes mirabilis


text: ETH ZURICH

text: public

text: sample_mirabilis_var_globosa_Trang_bizarre

text: Nepenthes mirabilis

text: Nepenthes mirabilis


text: ETH ZURICH

text: public

text: Nepenthes muluensis

text: Nepenthes muluensis


text: ETH ZURICH

text: public

text: Nepenthes neoguineensis

text: Nepenthes neoguineensis


text: ETH ZURICH

text: public

text: Nepenthes northiana

text: Nepenthes northiana


text: ETH ZURICH

text: public

text: Nepenthes ovata

text: Nepenthes ovata


text: ETH ZURICH

text: public

text: Nepenthes pectinata

text: Nepenthes pectinata


text: ETH ZURICH

text: public

text: sample_rafflesiana_giant_form_Brunei_147

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_giant_form_Brunei_22-02

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_giant_form_Kuching_328

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_giant_form_Kuching_329

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_typical_form_Binyo_455

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_typical_form_Binyo_456

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_typical_form_Brunei_151

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_typical_form_Brunei_168

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_typical_form_Kuching_330

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: sample_rafflesiana_typical_form_Kuching_337

text: Nepenthes rafflesiana

text: Nepenthes rafflesiana


text: ETH ZURICH

text: public

text: Nepenthes rajah

text: Nepenthes rajah


text: ETH ZURICH

text: public

text: Nepenthes reinwardtiana

text: Nepenthes reinwardtiana


text: ETH ZURICH

text: public

text: Nepenthes rhombicaulis

text: Nepenthes rhombicaulis


text: ETH ZURICH

text: public

text: Nepenthes sanguinea

text: Nepenthes sanguinea


text: ETH ZURICH

text: public

text: Nepenthes spectabilis

text: Nepenthes spectabilis


text: ETH ZURICH

text: public

text: Nepenthes stenophylla

text: Nepenthes stenophylla


text: ETH ZURICH

text: public

text: Nepenthes sumatrana

text: Nepenthes sumatrana


text: ETH ZURICH

text: public

text: Nepenthes talangensis

text: Nepenthes talangensis


text: ETH ZURICH

text: public

text: Nepenthes tentaculata

text: Nepenthes tentaculata


text: ETH ZURICH

text: public

text: Nepenthes treubiana

text: Nepenthes treubiana


text: ETH ZURICH

text: public

text: Nepenthes truncata

text: Nepenthes truncata


text: ETH ZURICH

text: public

text: Nepenthes vieillardii

text: Nepenthes vieillardii


text: ETH ZURICH

text: public

text: Nepenthes villosa

text: Nepenthes villosa


text: ETH ZURICH

text: public

text: Aldrovanda vesiculosa

text: Aldrovanda vesiculosa


text: ETH ZURICH

text: public

text: Nepenthes xiphioides

text: Nepenthes xiphioides


text: ETH ZURICH

text: public

text: Nepenthes spathulata

text: Nepenthes spathulata


text: ETH ZURICH

text: public

text: Nepenthes singalana

text: Nepenthes singalana


text: ETH ZURICH

text: public

text: Nepenthes ramispina

text: Nepenthes ramispina


text: ETH ZURICH

text: public

text: Nepenthes murudensis

text: Nepenthes murudensis


text: ETH ZURICH

text: public

text: Nepenthes mira

text: Nepenthes mira


text: ETH ZURICH

text: public

text: Nepenthes danseri

text: Nepenthes danseri


text: ETH ZURICH

text: public

text: Nepenthes bicalcarata

text: Nepenthes bicalcarata


text: ETH ZURICH

text: public

text: Nepenthes benstonei

text: Nepenthes benstonei


text: ETH ZURICH

text: public

text: Nepenthes petiolata

text: Nepenthes petiolata


text: ETH ZURICH

text: public

text: Nepenthes burkei

text: Nepenthes burkei


text: ETH ZURICH

text: public

text: Nepenthes edwardsiana

text: Nepenthes edwardsiana


text: ETH ZURICH

text: public

text: Nepenthes sibuyanensis

text: Nepenthes sibuyanensis


text: ETH ZURICH

text: public

text: Nepenthes glandulifera

text: Nepenthes glandulifera


text: ETH ZURICH

text: public

text: Nepenthes alba

text: Nepenthes alba


text: ETH ZURICH

text: public

text: Nepenthes izumiae

text: Nepenthes izumiae


text: ETH ZURICH

text: public

text: Nepenthes jamban

text: Nepenthes jamban


text: ETH ZURICH

text: public

text: Nepenthes jacquelineae

text: Nepenthes jacquelineae


text: ETH ZURICH

text: public

text: Nepenthes tenuis

text: Nepenthes tenuis


text: ETH ZURICH

text: public

text: Nepenthes klossii

text: Nepenthes klossii


text: ETH ZURICH

text: public

text: Nepenthes campanulata

text: Nepenthes campanulata


text: ETH ZURICH

text: public

text: Nepenthes chaniana

text: Nepenthes chaniana


text: ETH ZURICH

text: public

text: Nepenthes copelandii

text: Nepenthes copelandii


text: ETH ZURICH

text: public

text: Nepenthes lingulata

text: Nepenthes lingulata


text: ETH ZURICH

text: public

text: Nepenthes mindanaoensis

text: Nepenthes mindanaoensis


text: ETH ZURICH

text: public

text: Nepenthes naga

text: Nepenthes naga


text: ETH ZURICH

text: public

text: Nepenthes platychila

text: Nepenthes platychila


text: ETH ZURICH

text: public

text: Nepenthes thai

text: Nepenthes thai


text: ETH ZURICH

text: public

text: Nepenthes vogelii

text: Nepenthes vogelii


text: ETH ZURICH

text: public

text: Nepenthes papuana

text: Nepenthes papuana


text: ETH ZURICH

text: public

text: Nepenthes peltata

text: Nepenthes peltata


text: ETH ZURICH

text: public

text: Nepenthes ceciliae

text: Nepenthes ceciliae


text: ETH ZURICH

text: public

text: Nepenthes hamiguitanensis

text: Nepenthes hamiguitanensis


text: ETH ZURICH

text: public

text: Nepenthes micramphora

text: Nepenthes micramphora


text: ETH ZURICH

text: public

text: Nepenthes pulchra

text: Nepenthes pulchra


text: ETH ZURICH

text: public

text: Nepenthes surigaoensis

text: Nepenthes surigaoensis


text: ETH ZURICH

text: public

text: Nepenthes andamana

text: Nepenthes andamana


text: ETH ZURICH

text: public

text: Nepenthes bokorensis

text: Nepenthes bokorensis


text: ETH ZURICH

text: public

text: Nepenthes hurrelliana

text: Nepenthes hurrelliana


text: ETH ZURICH

text: public

text: Nepenthes hemsleyana

text: Nepenthes hemsleyana


text: ETH ZURICH

text: public

text: Nepenthes philippinensis

text: Nepenthes philippinensis


text: public

tag: Namespace:HZI - HELMHOLTZ CENTRE FOR INFECTION RESEARCH, BRAUNSCHWEIG, GERMANY

text: Transcriptomics and microscopic study of Stenotrophomonas bentonitica BII-R7 in response to uranium

text: Stenotrophomonas bentonitica

text: Stenotrophomonas bentonitica


text: HZI - HELMHOLTZ CENTRE FOR INFECTION RESEARCH, BRAUNSCHWEIG, GERMANY

text: public

text: Stenotrophomonas bentonitica

text: Stenotrophomonas bentonitica

text: Stenotrophomonas bentonitica BII-R7 in response to uranium


text: Virginia Commonwealth University

text: public

characteristic: collection date

text: domestic pig

text: Bone

text: lake

characteristic: environment (biome)

text: lake

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: investigation type

text: Sus scrofa domesticus

text: Henley Lake

characteristic: project name

text: Sus scrofa domesticus

text: sequencing-by-synthesis

characteristic: sequencing method

text: pig

characteristic: specific host

text: Waterlogged Porcine Bone Bacterial Community

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Virginia Commonwealth University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: domestic pig

text: lake

text: lake

text: water

text: USA

text: Sus scrofa domesticus

characteristic: organism

text: James River

text: Sus scrofa domesticus

text: sequencing-by-synthesis

characteristic: title

text: water


characteristic: ENA-FIRST-PUBLIC

text: ETH ZURICH

text: public

text: Nepenthes appendiculata

text: Nepenthes appendiculata


text: ETH ZURICH

text: public

text: Nepenthes argentii

text: Nepenthes argentii


text: ETH ZURICH

text: public

text: Nepenthes armin

text: Nepenthes armin


text: ETH ZURICH

text: public

text: Nepenthes attenboroughii

text: Nepenthes attenboroughii


text: ETH ZURICH

text: public

text: Nepenthes biak

text: Nepenthes biak


text: ETH ZURICH

text: public

text: Nepenthes carunculata

text: Nepenthes carunculata


text: ETH ZURICH

text: public

text: Nepenthes cf. ramos Camiguin HibokHibok

text: Nepenthes cf. ramos Camiguin HibokHibok


text: ETH ZURICH

text: public

text: Nepenthes chang

text: Nepenthes chang


text: ETH ZURICH

text: public

text: Nepenthes cornuta

text: Nepenthes cornuta


text: ETH ZURICH

text: public

text: Nepenthes dactylifera

text: Nepenthes dactylifera


text: ETH ZURICH

text: public

text: Nepenthes deaniana

text: Nepenthes deaniana


text: ETH ZURICH

text: public

text: Nepenthes epiphytica

text: Nepenthes epiphytica


text: ETH ZURICH

text: public

text: Nepenthes flava

text: Nepenthes flava


text: ETH ZURICH

text: public

text: Nepenthes hispida

text: Nepenthes hispida


text: ETH ZURICH

text: public

text: Nepenthes holdenii

text: Nepenthes holdenii


text: ETH ZURICH

text: public

text: Nepenthes kerrii

text: Nepenthes kerrii


text: ETH ZURICH

text: public

text: Nepenthes leonardoi

text: Nepenthes leonardoi


text: ETH ZURICH

text: public

text: Nepenthes monticola

text: Nepenthes monticola


text: ETH ZURICH

text: public

text: Nepenthes nigra

text: Nepenthes nigra


text: ETH ZURICH

text: public

text: Nepenthes palawanensis

text: Nepenthes palawanensis


text: ETH ZURICH

text: public

text: Nepenthes paniculata

text: Nepenthes paniculata


text: ETH ZURICH

text: public

text: Nepenthes pantaronensis

text: Nepenthes pantaronensis


text: ETH ZURICH

text: public

text: Nepenthes pitopangii

text: Nepenthes pitopangii


text: ETH ZURICH

text: public

text: Nepenthes rigidifolia

text: Nepenthes rigidifolia


text: ETH ZURICH

text: public

text: Nepenthes robcantleyi

text: Nepenthes robcantleyi


text: ETH ZURICH

text: public

text: Nepenthes cf. alata Mindanao Mt_Masay

text: Nepenthes cf. alata Mindanao Mt_Masay


text: ETH ZURICH

text: public

text: Nepenthes cf. densiflora Kemiri

text: Nepenthes cf. densiflora Kemiri


text: ETH ZURICH

text: public

text: Nepenthes sp. Doorman Lee Clarke 2

text: Nepenthes sp. Doorman Lee Clarke 2


text: ETH ZURICH

text: public

text: Nepenthes sumagaya

text: Nepenthes sumagaya


text: ETH ZURICH

text: public

text: Nepenthes suratensis

text: Nepenthes suratensis


text: ETH ZURICH

text: public

text: Nepenthes talaandig

text: Nepenthes talaandig


text: ETH ZURICH

text: public

text: Nepenthes thorelii

text: Nepenthes thorelii


text: ETH ZURICH

text: public

text: Nepenthes undulatifolia

text: Nepenthes undulatifolia


text: ETH ZURICH

text: public

text: Nepenthes viridis

text: Nepenthes viridis


text: ETH ZURICH

text: public

text: Nepenthes x trusmadiensis

text: Nepenthes x trusmadiensis


text: ETH ZURICH

text: public

text: Nepenthes zakriana

text: Nepenthes zakriana


text: LIFESEQUENCING

text: public

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: AAD Study

text: human gut metagenome

text: Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

text: Alfaro cultratus

text: Alfaro cultratus

text: Alfaro cultratus WGS


text: WAGENINGEN UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Micropoecilia bifurca

characteristic: organism

text: Micropoecilia bifurca

text: Poecilia bifurca WGS


characteristic: ENA-FIRST-PUBLIC

text: WAGENINGEN UNIVERSITY

text: public

text: Lerma livebearer

characteristic: common name

text: Poeciliopsis infans

text: Poeciliopsis infans

text: Poeciliopsis infans WGS

characteristic: title


text: WAGENINGEN UNIVERSITY

text: public

text: Poeciliopsis paucimaculata

text: Poeciliopsis paucimaculata

text: Poeciliopsis paucimaculata WGS


text: WAGENINGEN UNIVERSITY

text: public

text: swamp guppy

text: Micropoecilia picta

text: Micropoecilia picta

text: Poecilia picta WGS


text: WAGENINGEN UNIVERSITY

text: public

text: Sinaloa livebearer

text: Poeciliopsis presidionis

text: Poeciliopsis presidionis

text: Poeciliopsis presidionis WGS


text: WAGENINGEN UNIVERSITY

text: public

text: Brachyrhaphis roseni

text: Brachyrhaphis roseni

text: Brachyrhaphis roseni WGS


text: WAGENINGEN UNIVERSITY

text: public

text: Brachyrhaphis terrabensis

text: Brachyrhaphis terrabensis

text: Brachyrhaphis terrabensis WGS


text: WAGENINGEN UNIVERSITY

text: public

text: metallic livebearer

text: Girardinus metallicus

text: Girardinus metallicus

text: Girardinus metallicus WGS


text: WAGENINGEN UNIVERSITY

text: public

text: porthole livebearer

text: Poeciliopsis gracilis

text: Poeciliopsis gracilis

text: Poeciliopsis gracilis WGS


text: WAGENINGEN UNIVERSITY

text: public

text: Gill's molly

text: Poecilia gillii

text: Poecilia gillii

text: Poecilia gilii WGS


text: WAGENINGEN UNIVERSITY

text: public

text: blackstripe livebearer

text: Poeciliopsis prolifica

text: Poeciliopsis prolifica

text: Poeciliopsis prolifica WGS


text: WAGENINGEN UNIVERSITY

text: public

text: blackspotted livebearer

text: Poeciliopsis turneri

text: Poeciliopsis turneri

text: Poeciliopsis turneri WGS


text: WAGENINGEN UNIVERSITY

text: public

text: Poecilia wingei

text: Poecilia wingei

text: Poecilia wingei WGS


text: WAGENINGEN UNIVERSITY

text: public

text: Phalloptychus januarius

text: Phalloptychus januarius

text: Phalloptychus januarius WGS


text: public

tag: Namespace:School of Biology and Biological Engineering

text: crab-eating macaque

text: small RNA isolated from peripheral whole blood samples

characteristic: description

text: Macaca fascicularis

text: Macaca fascicularis

text: small RNA


text: School of Biology and Biological Engineering

text: public

text: crab-eating macaque

text: Macaca fascicularis

text: Macaca fascicularis

text: small RNA


text: Istituto Nazionale Genetica Molecolare

text: public

tag: Namespace:Istituto Nazionale Genetica Molecolare

text: ArrayExpress

characteristic: broker name

text: house mouse

text: Protocols: All experimental mice were sacrificed and the livers were recovered. Approximately 5 mg of liver tissue from high-fat (HFD) diet mice, both eIF6 wt and eIF6 heterozygous, were homogenized and RNA was purified Total RNA from liver tissues was purified using mirVanaTM isolation kit (ThermoFisher) according to the manufacturer protocols. RNA quality was assessed using the Agilent RNA Pico 6000 Kit and BioAnalyzer (Agilent Technologies) Random primed cDNA libraries were constructed from 100 ng of total RNA.

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: non-alcoholic fatty liver disease

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Istituto Nazionale Genetica Molecolare

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: adult

text: high fat diet

text: non-alcoholic fatty liver disease

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: house mouse

text: Single cell RNAseq of CD11b+ cells from uninfected spleen R2

text: Mus musculus

text: Mus musculus


characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

characteristic: Submitter Id

text: house mouse

characteristic: common name

text: Bulk RNAseq of uninfected spleen tissue 1 R1

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

characteristic: tissue type

text: Uninfected mouse 1 R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of uninfected spleen tissue 2 R1

characteristic: description

text: Mus musculus

text: Mus musculus

text: Spleen

text: Uninfected mouse 2 R1

characteristic: title


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of uninfected spleen tissue 2 R2

text: Mus musculus

text: Mus musculus

text: Spleen

text: Uninfected mouse 2 R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of uninfected spleen tissue 1 R2

text: Mus musculus

text: Mus musculus

text: Spleen

text: Uninfected mouse 1 R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of uninfected spleen tissue 3 R1

text: Mus musculus

text: Mus musculus

text: Spleen

text: Uninfected mouse 3 R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of uninfected spleen tissue 3 R2

text: Mus musculus

text: Mus musculus

text: Spleen

text: Uninfected mouse 3 R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of spleen tissue taken from Staphylococcus aureus infected mice at day 21 of infection, mouse 1, R2

text: Mus musculus

text: Mus musculus

text: Spleen

text: Infected mouse 1 R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of spleen tissue taken from Staphylococcus aureus infected mice at day 21 of infection, mouse 2, R1

text: Mus musculus

text: Mus musculus

text: Spleen

text: Infected mouse 2 R1


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of spleen tissue taken from Staphylococcus aureus infected mice at day 21 of infection, mouse 2, R2

text: Mus musculus

text: Mus musculus

text: Spleen

text: Infected mouse 2 R2


text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: house mouse

text: Bulk RNAseq of spleen tissue taken from Staphylococcus aureus infected mice at day 21 of infection, mouse 3, R1

text: Mus musculus

text: Mus musculus

text: Spleen

text: Infected mouse 3 R1


Single cell 1

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 1

characteristic: cell type

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 1, R1

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 2

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 2

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 1, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 3

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 3

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 2, R1

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 4

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 4

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 2, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 5

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 5

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 3, R1

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 6

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 6

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 3, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 7

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 7

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 4, R1

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 8

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 8

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of uninfected 4, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 9

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 9

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 1, R1

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 10

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 10

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 1, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 12

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 12

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 2, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 13

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 13

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 3, R1

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 14

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 14

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 3, R2

text: Mus musculus

text: Mus musculus

text: Spleen


Single cell 16

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 16

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 4, R2

text: Mus musculus

text: Mus musculus

text: Spleen


text: public

text: African oil palm

text: Elaeis guineensis

text: Elaeis guineensis

text: Illumina sequencing for PCR products of 20 oil palm accessions


text: COLD SPRING HARBOR LAB

text: public

tag: Namespace:COLD SPRING HARBOR LAB

characteristic: collection date

text: sorghum

characteristic: estimated size

text: USA

characteristic: geographic location (country and/or sea)

text: 41.6710° N

characteristic: geographic location (latitude)

text: 93.7130° W

characteristic: geographic location (longitude)

text: Normal

characteristic: isolation and growth condition

text: Sorghum bicolor

text: seedling

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: leaf

characteristic: plant structure

text: Sorghum bicolor


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: COLD SPRING HARBOR LAB

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: sorghum

text: USA

text: 41.6710° N

text: 93.7130° W

text: Normal

text: Sorghum bicolor

text: seedling

text: soil

text: leaf

text: Sorghum bicolor


Single cell 11_1

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 11_1

characteristic: Submitter Id

characteristic: cell type

text: house mouse

characteristic: common name

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 2, R1_1

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Spleen

characteristic: tissue type

characteristic: title


Single cell 15_1

text: HELMHOLTZ CENTER FOR INFECTION RESEARCH

text: public

text: Single cell 15_1

text: house mouse

text: Single cell RNAseq analysis of CD11b+ cells from the spleen of Staphylococcus aureus-infected 4, R1_1

text: Mus musculus

text: Mus musculus

text: Spleen


text: TU Kaiserslautern

text: public

tag: Namespace:TU Kaiserslautern

text: Retinal pigmental epithelial (RPE1) hTERT

characteristic: cell line

text: Epithelial

text: human

text: Homo sapiens

text: Homo sapiens

text: Transcriptome analyisis of monosomy X


characteristic: ENA-CHECKLIST

text: Abdurrahman Hassan Jibril

text: public

tag: Namespace:Abdurrahman Hassan Jibril

characteristic: collection date

text: Nigeria

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Gallus domesticus

characteristic: host scientific name

text: Salmonella

characteristic: isolate

text: Poultry carcass

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Abdurrahman Hassan Jibril

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Nigeria

text: healthy

text: Gallus domesticus

text: Salmonella

text: Human sludge

text: Salmonella enterica

text: Salmonella enterica


text: Dangchenyuan

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Metagenomic sequencing by Oxford Nanopore Technology

characteristic: description

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: organism

text: metagenomic

characteristic: pcr primers

text: metagenome

text: metagenomic

characteristic: target gene

text: metagenomic

characteristic: target subfragment

text: permafrost soil


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dangchenyuan

characteristic: INSDC center name

text: public

characteristic: collection date

text: the sampling site is at an altitude of 3500 m

text: soil

text: soil

text: soil

text: Yes

text: China

characteristic: geographic location (country and/or sea)

text: environmental samples

text: Metatranscriptomic

text: environmental samples

text: Metatranscriptomic

text: Metatranscriptomic

text: Metatranscriptomic sequencing by Illumina

characteristic: title


text: Dangchenyuan

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: description

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

text: Yes

text: China

text: environmental samples

text: metagenomic

text: environmental samples

text: metagenomic

text: metagenomic

text: Metagenomic sequencing by Illumina


text: Dangchenyuan

text: public

text: the sampling site is at an altitude of 4000 m

text: soil

text: soil

text: soil

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: environmental samples

characteristic: organism

text: metagenomic

characteristic: pcr primers

text: environmental samples

text: metagenomic

characteristic: target gene

text: metagenomic

characteristic: target subfragment

text: Metagenomic sequencing by Illumina


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Dangchenyuan

characteristic: INSDC center name

text: public

characteristic: collection date

text: the sampling site is at an altitude of 3000 m

text: soil

text: soil

text: soil

text: Yes

text: China

characteristic: geographic location (country and/or sea)

text: environmental samples

text: metagenomic

text: environmental samples

text: metagenomic

text: metagenomic

text: Metagenomic sequencing by Illumina

characteristic: title


text: UNIVERSITY OF HONG KONG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF HONG KONG

characteristic: Submitter Id

text: metagenome

text: metagenome


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

tag: Namespace:QUEEN MARY UNIVERSITY OF LONDON

text: 10x Genomics Linked Reads (Illumina paired end)

characteristic: description

text: Owenia fusiformis

characteristic: organism

text: Owenia fusiformis

text: 10x Genomics Linked Reads


text: QUEEN MARY UNIVERSITY OF LONDON

text: public

text: sperm

characteristic: cell type

text: PacBio Sequel data for Owenia fusiformis genome project

text: France, Roscoff

characteristic: geographic location (region and locality)

text: Owenia fusiformis

text: Owenia fusiformis

text: male

characteristic: sex

text: sperm

characteristic: tissue type

text: Owenia fusiformis PacBio Data


name: E-MTAB-9130:CCSCs BRAFV600E biological replicate#1 37DPT

text: BRAF V600E

characteristic: BRAF allele

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Cancer Stem Cells Unit, ISBReMIT, IRCSS Casa Sollievo della Sofferenza, Opera di San Pio da Pietrelcina

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Each participant provided the fresh stool sample in a collection tube filled with a DNA stabilization buffer (Canvax Biotech). DNA microbial extraction was performed using the QIAamp DNA Stool Mini Kit (Qiagen) starting from 250 µl of each sample according to the manufacturer’s protocol. After assessing DNA concentration and purity, samples were stored at -80° until processing. The V3-V4 hypervariable region of the bacterial 16S rRNA gene was amplified from total DNA according to the Illumina 16S Metagenomic Sequencing Library Preparation instructions, as previously described in Diamanti-Picchianti A, et al (Int J Mol Med ). In summary, the V3-V4 amplicon was obtained by PCR with universal primers, followed by purification. A second PCR was then performed to barcode the libraries using the Illumina dual-index system. Following a second step of purification, libraries were diluted to 4nM and pooled.

text: colorectal cancer

characteristic: disease

text: Mouse #3

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism substance

text: Mus musculus

text: late-stage

characteristic: tumor grading


name: E-MTAB-9130:CCSCs BRAFV600E biological replicate#1 43DPT

text: BRAF V600E

tag: attribute

characteristic: External Id

text: Cancer Stem Cells Unit, ISBReMIT, IRCSS Casa Sollievo della Sofferenza, Opera di San Pio da Pietrelcina

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #3

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

characteristic: title

text: end-stage


name: E-MTAB-9130:CCSCs BRAFV600E biological replicate#1 7DPT

text: BRAF V600E

characteristic: BRAF allele

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: colorectal cancer

text: Mouse #3

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: early-stage


name: E-MTAB-9130:CCSCs BRAFV600E biological replicate#2 37DPT

text: BRAF V600E

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: colorectal cancer

text: Mouse #3

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: late-stage


name: E-MTAB-9130:CCSCs BRAFV600E biological replicate#2 43DPT

text: BRAF V600E

text: public

text: ArrayExpress

text: house mouse

text: colorectal cancer

characteristic: disease

text: Mouse #3

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism substance

text: Mus musculus

text: end-stage

characteristic: tumor grading


name: E-MTAB-9130:CCSCs BRAFV600E biological replicate#2 7DPT

text: BRAF V600E

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #3

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: early-stage


name: E-MTAB-9130:CCSCs wt#1 biological replicate#1 37DPT

text: BRAF wt

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #1

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#1 biological replicate#1 37DPT

characteristic: title

text: late-stage


name: E-MTAB-9130:CCSCs wt#1 biological replicate#1 43DPT

text: BRAF wt

characteristic: BRAF allele

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: colorectal cancer

text: Mouse #1

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#1 biological replicate#1 43DPT

text: end-stage


name: E-MTAB-9130:CCSCs wt#1 biological replicate#1 7DPT

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: colorectal cancer

text: Mouse #1

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#1 biological replicate#1 7DPT

text: early-stage


name: E-MTAB-9130:CCSCs wt#1 biological replicate#2 37DPT

text: BRAF wt

text: public

text: ArrayExpress

text: house mouse

text: colorectal cancer

characteristic: disease

text: Mouse #1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism substance

text: Mus musculus

text: CCSCs wt#1 biological replicate#2 37DPT

text: late-stage

characteristic: tumor grading


name: E-MTAB-9130:CCSCs wt#1 biological replicate#2 43DPT

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #1

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#1 biological replicate#2 43DPT

text: end-stage


name: E-MTAB-9130:CCSCs wt#1 biological replicate#2 7DPT

text: BRAF wt

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #1

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#1 biological replicate#2 7DPT

characteristic: title

text: early-stage


name: E-MTAB-9130:CCSCs wt#2 biological replicate#1 37DPT

text: BRAF wt

characteristic: BRAF allele

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: colorectal cancer

text: Mouse #2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#2 biological replicate#1 37DPT

text: late-stage


name: E-MTAB-9130:CCSCs wt#2 biological replicate#1 43DPT

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: colorectal cancer

text: Mouse #2

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#2 biological replicate#1 43DPT

text: end-stage


name: E-MTAB-9130:CCSCs wt#2 biological replicate#1 7DPT

text: BRAF wt

text: public

text: ArrayExpress

text: house mouse

text: colorectal cancer

characteristic: disease

text: Mouse #2

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism substance

text: Mus musculus

text: CCSCs wt#2 biological replicate#1 7DPT

text: early-stage

characteristic: tumor grading


name: E-MTAB-9130:CCSCs wt#2 biological replicate#2 37DPT

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #2

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#2 biological replicate#2 37DPT

text: late-stage


name: E-MTAB-9130:CCSCs wt#2 biological replicate#2 43DPT

text: BRAF wt

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: colorectal cancer

text: Mouse #2

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#2 biological replicate#2 43DPT

characteristic: title

text: end-stage


name: E-MTAB-9130:CCSCs wt#2 biological replicate#2 7DPT

text: BRAF wt

characteristic: BRAF allele

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: colorectal cancer

text: Mouse #2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: CCSCs wt#2 biological replicate#2 7DPT

text: early-stage


E-MTAB-9130:Control sample #1

text: not available

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:Control sample #1

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: normal

text: Subject #1

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #1


E-MTAB-9130:Control sample #10

text: not available

text: public

text: E-MTAB-9130:Control sample #10

text: ArrayExpress

text: human

text: normal

characteristic: disease

text: Subject #10

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: Control sample #10


E-MTAB-9130:Control sample #11

text: not available

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9130:Control sample #11

text: ArrayExpress

text: human

text: normal

text: Subject #11

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #11


E-MTAB-9130:Control sample #12

text: not available

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9130:Control sample #12

text: ArrayExpress

text: human

text: normal

text: Subject #12

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #12


E-MTAB-9130:Control sample #13

text: not available

characteristic: BRAF allele

text: public

text: E-MTAB-9130:Control sample #13

characteristic: Submitter Id

text: ArrayExpress

text: human

text: normal

text: Subject #13

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #13

characteristic: title


E-MTAB-9130:Control sample #2

text: not available

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-9130:Control sample #2

text: ArrayExpress

text: human

characteristic: description

text: normal

text: Subject #2

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #2


E-MTAB-9130:Control sample #3

text: not available

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:Control sample #3

text: ArrayExpress

characteristic: broker name

text: human

text: normal

text: Subject #3

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #3


E-MTAB-9130:Control sample #4

text: not available

text: public

text: E-MTAB-9130:Control sample #4

text: ArrayExpress

text: human

characteristic: common name

text: normal

characteristic: disease

text: Subject #4

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #4


E-MTAB-9130:Control sample #5

text: not available

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:Control sample #5

text: ArrayExpress

text: human

text: normal

text: Subject #5

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: Control sample #5


E-MTAB-9130:Control sample #6

text: not available

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:Control sample #6

text: ArrayExpress

text: human

text: normal

text: Subject #6

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #6


E-MTAB-9130:Control sample #7

text: not available

characteristic: BRAF allele

text: public

characteristic: SRA accession

text: E-MTAB-9130:Control sample #7

characteristic: Submitter Id

text: ArrayExpress

text: human

text: normal

text: Subject #7

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #7


E-MTAB-9130:Control sample #8

text: not available

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-9130:Control sample #8

text: ArrayExpress

text: human

characteristic: description

text: normal

text: Subject #8

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #8

characteristic: title


E-MTAB-9130:Control sample #9

text: not available

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:Control sample #9

text: ArrayExpress

text: human

text: normal

text: Subject #9

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: Control sample #9


E-MTAB-9130:CRC BRAF V600E sample #1

text: BRAF V600E

text: public

text: E-MTAB-9130:CRC BRAF V600E sample #1

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #16

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF V600E sample #1

text: Stage IV

characteristic: tumor grading


E-MTAB-9130:CRC BRAF V600E sample #2

text: BRAF V600E

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC BRAF V600E sample #2

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #17

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC BRAF V600E sample #2

text: Stage IV


E-MTAB-9130:CRC BRAF V600E sample #3

text: BRAF V600E

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC BRAF V600E sample #3

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #18

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF V600E sample #3

text: Stage IV


E-MTAB-9130:CRC BRAF V600E sample #4

text: BRAF V600E

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-9130:CRC BRAF V600E sample #4

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: colorectal cancer

text: Patient #19

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF V600E sample #4

text: Stage IV


E-MTAB-9130:CRC BRAF V600E sample #5

text: BRAF V600E

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:CRC BRAF V600E sample #5

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #20

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF V600E sample #5

characteristic: title

text: Stage IIA


E-MTAB-9130:CRC BRAF V600E sample #6

text: BRAF V600E

text: public

text: E-MTAB-9130:CRC BRAF V600E sample #6

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #21

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF V600E sample #6

text: Stage IV

characteristic: tumor grading


E-MTAB-9130:CRC BRAF V600E sample #7

text: BRAF V600E

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC BRAF V600E sample #7

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #22

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC BRAF V600E sample #7

text: Stage IV


E-MTAB-9130:CRC BRAF V600E sample #8

text: BRAF V600E

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC BRAF V600E sample #8

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #23

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF V600E sample #8

text: Stage IV


E-MTAB-9130:CRC BRAF wt sample #1

text: BRAF wt

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-9130:CRC BRAF wt sample #1

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: colorectal cancer

text: Patient #1

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #1

text: Stage IIIA


E-MTAB-9130:CRC BRAF wt sample #10

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:CRC BRAF wt sample #10

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #10

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #10

characteristic: title

text: Stage IIA


E-MTAB-9130:CRC BRAF wt sample #11

text: BRAF wt

text: public

text: E-MTAB-9130:CRC BRAF wt sample #11

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #11

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #11

text: Stage IIIB

characteristic: tumor grading


E-MTAB-9130:CRC BRAF wt sample #12

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC BRAF wt sample #12

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #12

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC BRAF wt sample #12

text: Stage II


E-MTAB-9130:CRC BRAF wt sample #13

text: BRAF wt

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC BRAF wt sample #13

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #13

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #13

text: Stage IIA


E-MTAB-9130:CRC BRAF wt sample #14

text: BRAF wt

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-9130:CRC BRAF wt sample #14

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: colorectal cancer

text: Patient #14

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #14

text: Stage III


E-MTAB-9130:CRC BRAF wt sample #15

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:CRC BRAF wt sample #15

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #15

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #15

characteristic: title

text: Stage IV


E-MTAB-9130:CRC BRAF wt sample #2

text: BRAF wt

text: public

text: E-MTAB-9130:CRC BRAF wt sample #2

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #2

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #2

text: Stage IIIB

characteristic: tumor grading


E-MTAB-9130:CRC BRAF wt sample #3

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC BRAF wt sample #3

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #3

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC BRAF wt sample #3

text: Stage IIA


E-MTAB-9130:CRC BRAF wt sample #4

text: BRAF wt

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC BRAF wt sample #4

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #4

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #4

text: Stage IV


E-MTAB-9130:CRC BRAF wt sample #5

text: BRAF wt

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-9130:CRC BRAF wt sample #5

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: colorectal cancer

text: Patient #5

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #5

text: Stage IIIA


E-MTAB-9130:CRC BRAF wt sample #6

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:CRC BRAF wt sample #6

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #6

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #6

characteristic: title

text: Stage IV


E-MTAB-9130:CRC BRAF wt sample #7

text: BRAF wt

text: public

text: E-MTAB-9130:CRC BRAF wt sample #7

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #7

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #7

text: Stage IIA

characteristic: tumor grading


E-MTAB-9130:CRC BRAF wt sample #8

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC BRAF wt sample #8

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #8

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC BRAF wt sample #8

text: Stage IIA


E-MTAB-9130:CRC BRAF wt sample #9

text: BRAF wt

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC BRAF wt sample #9

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #9

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC BRAF wt sample #9

text: Stage IIIA


E-MTAB-9130:CRC stage I sample#1

text: BRAF wt

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-9130:CRC stage I sample#1

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: colorectal cancer

text: Patient #24

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#1

text: Stage I


E-MTAB-9130:CRC stage I sample#10

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:CRC stage I sample#10

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #33

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#10

characteristic: title

text: Stage I


E-MTAB-9130:CRC stage I sample#2

text: BRAF wt

text: public

text: E-MTAB-9130:CRC stage I sample#2

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #25

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#2

text: Stage I

characteristic: tumor grading


E-MTAB-9130:CRC stage I sample#3

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC stage I sample#3

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #26

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC stage I sample#3

text: Stage I


E-MTAB-9130:CRC stage I sample#4

text: BRAF wt

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC stage I sample#4

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #27

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#4

text: Stage I


E-MTAB-9130:CRC stage I sample#5

text: BRAF wt

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

text: E-MTAB-9130:CRC stage I sample#5

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: colorectal cancer

text: Patient #28

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#5

text: Stage I


E-MTAB-9130:CRC stage I sample#6

text: BRAF wt

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9130:CRC stage I sample#6

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #29

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#6

characteristic: title

text: Stage I


E-MTAB-9130:CRC stage I sample#7

text: BRAF wt

text: public

text: E-MTAB-9130:CRC stage I sample#7

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colorectal cancer

characteristic: disease

text: Patient #30

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#7

text: Stage I

characteristic: tumor grading


E-MTAB-9130:CRC stage I sample#8

text: BRAF wt

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9130:CRC stage I sample#8

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #31

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: feces

characteristic: organism substance

text: Homo sapiens

text: CRC stage I sample#8

text: Stage I


E-MTAB-9130:CRC stage I sample#9

text: BRAF wt

characteristic: BRAF allele

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-9130:CRC stage I sample#9

text: ArrayExpress

text: human

text: colorectal cancer

text: Patient #32

text: Homo sapiens

text: Homo sapiens

text: feces

text: Homo sapiens

text: CRC stage I sample#9

text: Stage I


name: E-MTAB-9130:Healthy biological replicate#1 30DPT

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: description

text: normal

text: Mouse #4

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: Healthy biological replicate#1 30DPT


name: E-MTAB-9130:Healthy biological replicate#1 43DPT

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: house mouse

text: normal

text: Mouse #4

text: Mus musculus

characteristic: organism

text: Mus musculus

text: feces

text: Mus musculus

text: Healthy biological replicate#1 43DPT

characteristic: title


name: E-MTAB-9130:Healthy biological replicate#1 7DPT

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: normal

characteristic: disease

text: Mouse #4

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: Healthy biological replicate#1 7DPT


name: E-MTAB-9130:Healthy biological replicate#2 30DPT

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: normal

text: Mouse #4

characteristic: individual

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: Healthy biological replicate#2 30DPT


name: E-MTAB-9130:Healthy biological replicate#2 43DPT

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: normal

text: Mouse #4

text: Mus musculus

text: Mus musculus

text: feces

characteristic: organism substance

text: Mus musculus

text: Healthy biological replicate#2 43DPT


name: E-MTAB-9130:Healthy biological replicate#2 7DPT

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: normal

text: Mouse #4

text: Mus musculus

text: Mus musculus

text: feces

text: Mus musculus

text: Healthy biological replicate#2 7DPT


characteristic: ENA-CHECKLIST

text: University of Heidelberg

text: public

characteristic: SRA accession

tag: Namespace:University of Heidelberg

text: ArrayExpress

text: hematopoietic multipotent progenitor cell

characteristic: cell type

text: house mouse

text: Protocols: Bone marrow (BM) was isolated from pooled femora, tibiae, ilia and vertebrae of C57BL6 mice by gentle crushing in PBS using a mortar and pistil. MPP5 progenitors were identified by immunophenotype (Lineage- Sca1+ Kit+ CD150- CD48- CD34+ CD135-), purified by FACS and subsequently subjected to 3'-seq. Total RNA isolation was performed using ARCTURUS PicoPure RNA isolation kit (Life Technologies, Invitrogen) according to the manufacturer's instructions. Total RNA was used for quality controls and for normalization of the starting material. Sequencing libraries were generated with 3 ng of total RNA using the QuantSeq 3' mRNA-Seq Library Prep Kit REV (Lexogen) according to the manufacturer's indications except for adaptations (version 015UG009V0221: Do not skip step 2; 15 minute incubation time step 4; Cycle Number was adjusted to 19 using the PCR Add-on Kit for Illumina (Lexogen))

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: immunophenotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

characteristic: replicate

text: Mus musculus

characteristic: strain


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Heidelberg

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: Lineage- Sca1+ Kit+ CD150- CD48- CD34+ CD135-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: Mus musculus

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:University of Copenhagen, Department of Veterinary and Animal Sciences

text: Ursus maritimus

characteristic: host scientific name

text: Ursidibacter maritimus

text: Ursidibacter maritimus

text: U. maritimus in oral cavity of wild and captive polar bears


Lady

text: University of Copenhagen, Department of Veterinary and Animal Sciences

text: public

characteristic: SRA accession

text: Lady

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


Nanok

text: public

text: Nanok

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


text: public

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


Milakx

text: public

text: Milakx

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


Nuukx

text: public

text: Nuukx

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


Ilkax

text: public

text: Ilkax

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


Malikx

text: public

text: Malikx

text: Ursus maritimus

text: Ursidibacter maritimus

text: Ursidibacter maritimus


text: Abdurrahman Hassan Jibril

text: public

characteristic: collection date

text: Salmonella strains from day old chicks

text: Nigeria

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: Gallus domesticus

text: Salmonella

characteristic: isolate

text: Poultry vendoors and farms

characteristic: isolation source

text: Salmonella enterica

text: Salmonella enterica


E-MTAB-9147:cfim-1(lf) replicate1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9147:cfim-1(lf) replicate1

tag: Namespace:Peter Gilgan Centre for Research and Learning, The Hospital for Sick Children,

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: All crosses were done by plating 3-5 hermaphrodites with 10-15 males on petri dishes filled with NGM containing a bacterial lawn. Approximately 5 F1 hermaphrodites at the L4 stage of development were then plated onto plates. F2 progeny were collected at the L4 stage of development and singled out onto separate plates. F2 worms were incubated until they had laid eggs, then collected and lysed. The worm lysate was used for PCR reactions to confirm the presence of the desired genetic lesion. RNA was extracted from L4 stage worms using TRIzol (Invitrogen). To construct RNA-seq libraries from C.elegans samples, we used an automated QuantSeq 3'mRNA-seq (Lexogen GmbH, Vienna) using the Agilent NGS Workstation (Agilent Technologies, Santa Clara) as per manufacturer's protocol. Briefly, 250 ng of total RNA was used to generate cDNA. cDNA was amplified with 17 PCR cycles as determined by qPCR analysis using the PCR Add-on kit (Lexogen). ERCC RNA Spike-ins were added following manufacturer’s instructions. The resulting libraries were quantified with Qubit DNA HS (Thermo Fisher, Waltham) and fragment sizes analyzed on the Agilent Bioanalyzer using the High Sensitivity DNA assay prior to sequencing.

text: L4 larva

characteristic: developmental stage

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

characteristic: strain

text: cfim-1(lf) replicate1


E-MTAB-9147:cfim-1(lf) replicate2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Peter Gilgan Centre for Research and Learning, The Hospital for Sick Children,

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9147:cfim-1(lf) replicate2

text: ArrayExpress

characteristic: description

text: L4 larva

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: cfim-1(lf) replicate2

characteristic: title


E-MTAB-9147:cfim-1(lf) replicate3

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9147:cfim-1(lf) replicate3

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: cfim-1(lf) replicate3


E-MTAB-9147:daf-16(lf) replicate 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9147:daf-16(lf) replicate 1

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-16(lf) replicate 1


E-MTAB-9147:daf-16(lf) replicate 2

text: public

text: E-MTAB-9147:daf-16(lf) replicate 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-16(lf) replicate 2


E-MTAB-9147:daf-16(lf) replicate 3

text: public

text: E-MTAB-9147:daf-16(lf) replicate 3

text: ArrayExpress

text: L4 larva

characteristic: developmental stage

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-16(lf) replicate 3


E-MTAB-9147:daf-2(lf) replicate 1

text: public

text: E-MTAB-9147:daf-2(lf) replicate 1

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

characteristic: strain

text: daf-2(lf) replicate 1


E-MTAB-9147:daf-2(lf) replicate 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-9147:daf-2(lf) replicate 2

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf) replicate 2


E-MTAB-9147:daf-2(lf) replicate 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9147:daf-2(lf) replicate 3

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf) replicate 3


characteristic: INSDC last update

text: public

text: E-MTAB-9147:daf-2(lf);cfim-1(lf) replicate 1

text: ArrayExpress

characteristic: description

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf);cfim-1(lf) replicate 1


text: public

text: E-MTAB-9147:daf-2(lf);cfim-1(lf) replicate 2

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

characteristic: organism

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf);cfim-1(lf) replicate 2

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9147:daf-2(lf);cfim-1(lf) replicate 3

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf);cfim-1(lf) replicate 3


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9147:daf-2(lf);daf-16(lf) replicate 1

text: ArrayExpress

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf);daf-16(lf) replicate 1


text: public

text: E-MTAB-9147:daf-2(lf);daf-16(lf) replicate 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: L4 larva

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf);daf-16(lf) replicate 2


text: public

text: E-MTAB-9147:daf-2(lf);daf-16(lf) replicate 3

text: ArrayExpress

text: L4 larva

characteristic: developmental stage

characteristic: genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: daf-2(lf);daf-16(lf) replicate 3


E-MTAB-9147:N2 (WT) replicate 1

text: public

text: E-MTAB-9147:N2 (WT) replicate 1

text: ArrayExpress

text: L4 larva

text: wild type genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

characteristic: organism part

text: Caenorhabditis elegans

characteristic: strain

text: N2 (WT) replicate 1


E-MTAB-9147:N2 (WT) replicate 2

characteristic: ENA-CHECKLIST

characteristic: External Id

text: public

text: E-MTAB-9147:N2 (WT) replicate 2

text: ArrayExpress

text: L4 larva

text: wild type genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: N2 (WT) replicate 2


E-MTAB-9147:N2 (WT) replicate 3

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9147:N2 (WT) replicate 3

text: ArrayExpress

text: L4 larva

text: wild type genotype

text: Caenorhabditis elegans

text: Caenorhabditis elegans

text: whole organism

text: Caenorhabditis elegans

text: N2 (WT) replicate 3


text: QUEEN MARY UNIVERSITY OF LONDON

characteristic: INSDC last update

text: public

text: Genome assembly of Owenia fusiformis generated from PacBio Sequel data, Illumina short reads and optical mapping

characteristic: description

text: France, Roscoff

characteristic: geographic location (region and locality)

text: Owenia fusiformis

text: Owenia fusiformis

text: male

characteristic: sex

text: Owenia fusiformis genome assembly


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9153:TM00356_LG0552F574P0000P1027P2

tag: Namespace:THE JACKSON LABORATORY

unit: year

characteristic: age

text: ArrayExpress

text: lung adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: PDX models were generated using subcutaneous tumor implantation in female NOD.Cg-Prkdc<scid> Il2rg<tm1Wjl>/SzJ (NSG; JAX strain 005557) host mice. Tumors were grown, collected, and fragmented for serial passage in NSG mice. Tumor samples at described passage numbers were taken for expression analysis. Tissues preserved in RNAlater were homogenized in TRIzol (ThermoFisher Scientific) using a gentleMACS dissociator (Miltenyi Biotec Inc). Total RNA was isolated using the miRNeasy Mini kit (Qiagen) according to manufacturer’s protocols, including the optional DNase digest step. RNA quality and concentration were assessed using the RNA 6000 Nano LabChip assay on the 2100 Bioanalyzer instrument and Nanodrop 2000 spectrophotometer (Thermo Scientific). Non-stranded libraries were constructed using TruSeq RNA Library Prep Kit v2 (Illumina). PolyA containing mRNA was isolated using oligo-dT magnetic beads, followed by RNA fragmentation, first and second strand cDNA synthesis, ligation of Illumina-specific adapters containing a unique barcode sequence for each library, and PCR amplification. Libraries were checked for quality and concentration using the DNA 1000 assay (Agilent Technologies) and quantitative PCR (KAPA Biosystems), according to the manufacturers’ instructions.

text: adult

text: lung adenocarcinoma

characteristic: disease

text: American Indian or Alaska Native

characteristic: ethnic group

text: Not Hispanic or Latino

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: passage number

text: soft tissue

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: title

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: invasive ductal carcinoma

text: treatment naive

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: Asian or Pacific Islander

text: Not Hispanic or Latino

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: breast

text: Homo sapiens

text: female

characteristic: sex

characteristic: tumor grade

text: AJCC IIA

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: lung adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

text: lung adenocarcinoma

characteristic: disease

text: Asian or Pacific Islander

characteristic: ethnic group

text: Not Hispanic or Latino

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: lung

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: title

text: AJCC IV

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lung squamous cell carcinoma

text: treatment naive

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: Asian or Pacific Islander

text: Not Hispanic or Latino

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: passage number

text: lung

text: Homo sapiens

text: female

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: lung adenocarcinoma

characteristic: clinical history

text: treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

text: lung adenocarcinoma

characteristic: disease

text: Asian or Pacific Islander

characteristic: ethnic group

text: Not Hispanic or Latino

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grade

text: AJCC IB

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: invasive ductal carcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: Asian or Pacific Islander

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: title

text: AJCC IIA

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: lung adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

text: lung adenocarcinoma

characteristic: disease

text: Asian or Pacific Islander

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

text: Homo sapiens

text: female

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Carcinoma: Urothelial carcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: bladder transitional cell carcinoma

text: African

text: Not Hispanic or Latino

text: Homo sapiens

text: Homo sapiens

text: bladder

characteristic: passage number

text: bladder

text: Homo sapiens

text: male

characteristic: sex

text: Grade:high

characteristic: tumor grade

text: AJCC IV

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: neuroblastoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: juvenile stage

text: neuroblastoma

characteristic: disease

text: African

characteristic: ethnic group

text: Not Hispanic or Latino

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: retroperitoneal space

characteristic: organism part

text: lymph node

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: title

text: AJCC IV

text: Metastatic