characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Dutch COVID-19 response team

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Flevoland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Dutch COVID-19 response sample sequencing


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Gelderland

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

characteristic: organism

characteristic: title


text: Dutch COVID-19 response team

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Holland

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: not collected


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Overijssel

text: Human

text: not collected

text: Homo sapiens

text: not provided

text: restricted access

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status


text: Dutch COVID-19 response team

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: Dutch COVID-19 response team

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Utrecht

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not collected

characteristic: host health state

text: Homo sapiens

text: not provided

text: restricted access

text: not collected

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: Dutch COVID-19 response team

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

text: Dutch COVID-19 response team

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Zuid-Holland

text: Human

text: not collected

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: not collected


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

text: Public Health Authority of the Slovak Republic, Trnavská cesta 52, 826 45 Bratislava, Slovakia

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

characteristic: geographic location (country and/or sea)

unit: year

characteristic: host age

text: Human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: broker name

text: not provided

text: Slovakia

text: Human

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab

characteristic: organism


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10573:HaloReverba_ChIP-seq_ZT20_HOM

tag: Namespace:UNIVERSITY OF MANCHESTER

text: 12 to 21

unit: week

characteristic: age

text: ArrayExpress

text: house mouse

text: Protocols: For experimental samples, gonadal white adipose tissue was collected from male homozygous HaloReverbα mice at ZT8; for control samples, tissue was collected from male homozygous HaloReverbα mice at ZT20, and from male WT mice (related colony) at ZT8. REVERBα HaloChIP-seq was performed using a protocol based on (Hunter et al., 2020 - doi 10.1073/pnas.2005330117), with modifications informed by (Castellano-Castillo et al., 2018 - doi 10.1371/journal.pone.0192314). Reagents were from the ChIP-IT High Sensitivity Chromatin Preparation kit (Active Motif 53046) and the HaloCHIP System (Promega G9410), unless otherwise specified. Freshly-harvested gonadal white adipose tissue was finely minced and dual-crosslinked in 10ml 0.5M disuccinimidyl glutarate (ThermoFisher 20593) followed by 10ml 1% formaldehyde-PBS. After quenching with glycine, tissue pieces were washed x2 in ice-cold ChIP wash buffer (Active Motif), then resuspended in 5ml freshly-made adipose lysis buffer (10mM Tris HCl, 140mM NaCl, 5mM EDTA, 1% NP-40) supplemented with a HaloChIP-compatible protease inhibitor cocktail (Promega G6521). Fixation and wash solutions were changed by centrifuging tissue suspensions at 1250g for 3 minutes (4ºC), and removing the infranatant from below the floating adipose tissue pieces with glass Pasteur pipettes. Tissue was disrupted mechanically with the Qiagen TissueRuptor, then incubated on ice for 30 minutes to lyse cells. Following centrifugation (2780g for 3 minutes, 4ºC), the lipid layer and supernatant were carefully removed, and the nuclei pellet resuspended in 650ul Mammalian Lysis Buffer (Promega), supplemented with protease inhibitor cocktail. Suspensions were once again incubated on ice (15 minutes) prior to low-amplitude probe sonication (Active Motif) (x8 2 minute cycles of 30s on/30s off, 20% amplitude). Cellular debris was pelleted by spinning at 21,000g for 3 minutes (4ºC), and 600ul of the chromatin suspension added to HaloLink™ Resin, prepared as per manufacturer’s instructions. Pull-down reactions were rotated for 3 hours at room temperature, subsequent to wash and elution steps as per manufacturer’s HaloCHIP System instructions. Eluted ChIP DNA was purified with the ChIP DNA Clean & Concentrator kit (Zymo D5205). ChIP DNA was quantified with the Qubit dsDNA HS Assay Kit (Invitrogen Q32851). For each ChIP-seq library preparation, ChIP DNA from 3-7 mice was pooled to total 5ng ChIP DNA. ChIP DNA pools (x2 ZT8 HaloReverbα pools, x1 ZT20 HaloReverbα pool, x1 ZT8 WT pool) were submitted to the University of Manchester Genomic Technologies Core Facility for TruSeq ChIP library preparation (Illumina) as per manufacturer’s instructions.

characteristic: description

text: adult

characteristic: developmental stage

text: HaloReverb -/-

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: gonadal fat pad

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

unit: hour

characteristic: time

characteristic: title


text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10573:HaloReverba_ChIP-seq_ZT8_HOM_rep1

characteristic: Submitter Id

text: 12 to 21

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

text: HaloReverb -/-

text: Mus musculus

characteristic: organism

text: Mus musculus

text: gonadal fat pad

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10573:HaloReverba_ChIP-seq_ZT8_HOM_rep2

text: 12 to 21

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: HaloReverb -/-

text: Mus musculus

text: Mus musculus

text: gonadal fat pad

text: Mus musculus

text: male


text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10573:HaloReverba_ChIP-seq_ZT8_WT

text: 12 to 21

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: gonadal fat pad

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: time

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Health Services Laboratories

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: title


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: host scientific name

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: description

text: United Kingdom

text: Scotland

text: Human

characteristic: organism


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

text: Wales

text: Human

characteristic: title


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Northern Ireland

characteristic: geographic location (region and locality)

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Scotland

text: Human

characteristic: host scientific name

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: KLE TEch

text: public

tag: Namespace:KLE TEch

text: rice

characteristic: common name

text: TETSTSTSTST

characteristic: description

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: TETSTSTSTST


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Wales

text: Human

characteristic: title


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

text: Northern Ireland

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Health Services Laboratories

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Norwegian University of Life Sciences (NMBU), Faculty of Biosciences, Department of Animal and Aquacultural Sciences

text: ArrayExpress

text: Atlantic salmon

characteristic: common name

text: Protocols: All fish was killed with a sharp blow to the head after four weeks. The following tissues/content were sampled: feces (Inga Angell), liver, stomach, pyloric caeca, midgut (1 cm below last caeca) and spleen. The samples were flash frozen in liquid nitrogen and stored at -80 for long term storage. The fish had not been starved prior to sampling. Total RNA was extracted with Qiagen RNeasy Plus Universal Kit. RNA quality was measured with Nanodrop8000 and Agilent Bioanalyzer 2100. Library preperation was done with TruSeq Stranded mRNA Library Prep Kit (Illumina, San Diego, CA, USA).

characteristic: description

text: adult

characteristic: developmental stage

text: black soldier fly larvae

characteristic: diet

text: Salmo salar

text: Salmo salar

text: actinopterygian pyloric caecum

characteristic: organism part

text: Salmo salar

text: female

characteristic: sex


text: Norwegian University of Life Sciences (NMBU), Faculty of Biosciences, Department of Animal and Aquacultural Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Atlantic salmon

text: adult

text: black soldier fly larvae

text: Salmo salar

characteristic: organism

text: Salmo salar

text: actinopterygian pyloric caecum

text: Salmo salar

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

characteristic: broker name

text: Atlantic salmon

text: adult

text: black soldier fly larvae

text: Salmo salar

text: Salmo salar

text: actinopterygian pyloric caecum

text: Salmo salar

text: female


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: Atlantic salmon

characteristic: common name

text: adult

text: black soldier fly larvae

text: Salmo salar

text: Salmo salar

text: stomach

text: Salmo salar

text: male


text: public

text: ArrayExpress

text: Atlantic salmon

characteristic: description

text: adult

characteristic: developmental stage

text: black soldier fly larvae

characteristic: diet

text: Salmo salar

text: Salmo salar

text: stomach

text: Salmo salar

text: female


characteristic: INSDC center name

text: public

text: ArrayExpress

text: Atlantic salmon

text: adult

text: cellulose

text: Salmo salar

text: Salmo salar

text: actinopterygian pyloric caecum

characteristic: organism part

text: Salmo salar

text: female

characteristic: sex


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Atlantic salmon

text: adult

text: cellulose

text: Salmo salar

text: Salmo salar

text: actinopterygian pyloric caecum

text: Salmo salar

text: male


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Atlantic salmon

text: adult

text: cellulose

text: Salmo salar

characteristic: organism

text: Salmo salar

text: stomach

text: Salmo salar

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: Atlantic salmon

text: adult

text: cellulose

text: Salmo salar

text: Salmo salar

text: stomach

text: Salmo salar

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: Atlantic salmon

text: adult

text: shrimp shell chitin

text: Salmo salar

text: Salmo salar

text: actinopterygian pyloric caecum

text: Salmo salar

text: female


text: public

text: ArrayExpress

text: Atlantic salmon

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: shrimp shell chitin

text: Salmo salar

text: Salmo salar

text: actinopterygian pyloric caecum

text: Salmo salar

text: male


characteristic: INSDC center name

text: public

text: ArrayExpress

text: Atlantic salmon

text: adult

text: shrimp shell chitin

characteristic: diet

text: Salmo salar

text: Salmo salar

text: stomach

characteristic: organism part

text: Salmo salar

text: female


characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Atlantic salmon

text: adult

text: shrimp shell chitin

text: Salmo salar

text: Salmo salar

text: stomach

text: Salmo salar

text: male

characteristic: sex


text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: organism

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: England

text: Human


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Health Services Laboratories

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

text: Wales

text: Human


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: description

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: organism

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Health Services Laboratories

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Wales

text: Human


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

characteristic: description

text: United Kingdom

text: Wales

text: Human

characteristic: organism

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Scotland

text: Human


text: KLE TEch

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: rice

characteristic: common name

text: KAKAJ

text: Oryza sativa

text: Oryza sativa

text: AMMMSMSM


E-MTAB-10574:Sample 1

text: public

text: E-MTAB-10574:Sample 1

tag: Namespace:Department of Plant Sciences University of Cambridge

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

text: Protocols: 0.5g leaf tissue was fixed in 1% formaldehyde (v/v) and 0.01% Triton-X (v/v) for 20 min using vacuum infiltration. The reaction was quenched by adding glycine to a final concentration of 125 mM for 10 min using vacuum infiltration. The leaf tissue was rinsed 3 times with MilliQ water, patted dry and flash frozen in liquid Nitrogen. Plants were germinated and grown in F2 compost and transferred to 16h light and 8h dark at 22C day temperature and 18C night, 70% humidity Chromatin extraction, digestion, reverse cross-linking and DNA purification were carried out as described in Liu et al, 2017. PMID: 28848243 As described in Liu et al, 2017. PMID: 28848243

text: sporophyte vegetative stage

characteristic: developmental stage

characteristic: epigenotype

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

characteristic: organism part

text: Solanum lycopersicum

text: Sample 1


E-MTAB-10574:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Plant Sciences University of Cambridge

text: public

text: E-MTAB-10574:Sample 10

text: ArrayExpress

characteristic: broker name

text: tomato

text: Lukullus

text: sporophyte vegetative stage

text: sulfurea

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum

text: Sample 10


E-MTAB-10574:Sample 6

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10574:Sample 6

text: ArrayExpress

text: tomato

text: Lukullus

characteristic: description

text: sporophyte vegetative stage

text: sulfurea

text: Solanum lycopersicum

characteristic: organism

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum

text: Sample 6

characteristic: title


E-MTAB-10574:Sample 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10574:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: tomato

characteristic: common name

text: Lukullus

text: sporophyte vegetative stage

text: sulfurea

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum

text: Sample 2


E-MTAB-10574:Sample 9

text: public

text: E-MTAB-10574:Sample 9

characteristic: age

text: ArrayExpress

text: tomato

characteristic: cultivar

text: sporophyte vegetative stage

characteristic: developmental stage

characteristic: epigenotype

text: wild type genotype

characteristic: genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum

text: Sample 9


E-MTAB-10574:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10574:Sample 5

text: ArrayExpress

text: tomato

text: sporophyte vegetative stage

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

characteristic: organism part

text: Solanum lycopersicum

text: Sample 5


text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:822-402

tag: Namespace:UPPSALA UNIVERSITY

text: CAAGCAGAAGACGGCATACGAGATAATCTTCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gavleborg, Nordanstig

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

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characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: AACGCTA,GCCAATG

characteristic: multiplex identifiers

text: Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758-15763.

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

text: Wild animal oral microbiomes reflect the history of human antibiotics use

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:841-403

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Bracke

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: TAGCACG,TAGCACG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:857-404

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Vasterbotten, Dorotea

text: oral cavity

text: dental calculus

characteristic: host body product

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characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: ACTGCGT,ACTGCGT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:889-406

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Norrbotten, Arjeplog

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: TTACAGT,TAGCACG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:873-405

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Jamtland, Stromsund

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

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text: host-associated

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text: GGTATCG,GTCATAC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:890-407

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Vasterbotten, Storuman

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: AACGCTA,ACTGCGT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:890-408

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: not collected

text: not collected

text: Dalarna, unknown

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

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text: CAATTGC,ATCGATT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


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text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:890-409

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Harjedalen

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: GCTAGCC,ACTGCGT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:890-410

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Jamtland, Harjedalen

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: CGATGTA,TGGCCAT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:890-411

characteristic: Submitter Id

characteristic: adapters

text: not collected

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Norrbotten, unknown

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: GTCATAC,TGACTGG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:891-412

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Norrbotten, Gallivare

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: ACTGCGT,GCCAATG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:891-413

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Harjedalen

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: ATTGGCA,ATCGATT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:891-414

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Norrbotten, Overtornea

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

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characteristic: library construction method

characteristic: library reads sequenced

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text: CGATGTA,CAGTCAA

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:891-415

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Stromsund

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

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text: tooth

text: brown bear

text: host-associated

text: metagenome

text: TTACAGT,TGGCCAT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:891-416

text: CAAGCAGAAGACGGCATACGAGATAATCTTCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT

text: mammalian host

text: mouth

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text: AACGCTA,ATTGGCA

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

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text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:892-417

characteristic: Submitter Id

characteristic: adapters

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text: mammalian host

characteristic: environment (biome)

text: mouth

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Krokom

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

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text: host-associated

text: metagenome

text: Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.

text: GCTAGCC,TAGCACG

text: Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758-15763.

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:892-418

text: mammalian host

text: mouth

text: dental calculus

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text: Jamtland, Berg

text: oral cavity

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characteristic: host body product

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text: brown bear

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: TGACTGG,ACTGCGT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

text: Wild animal oral microbiomes reflect the history of human antibiotics use

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:892-419

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Dalarna, unknown

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: GCCAATG,TTACAGT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:892-420

text: mammalian host

text: mouth

text: dental calculus

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text: Jamtland, Harjedalen

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characteristic: host body product

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characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

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characteristic: library reads sequenced

characteristic: library size

text: TGACTGG,ATTGGCA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:892-421

characteristic: Submitter Id

characteristic: adapters

text: not collected

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Norrbotten, unknown

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: TGGCCAT,TAGCACG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:892-422

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Norrbotten, Jokkmokk

text: oral cavity

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characteristic: host common name

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text: oral metagenome

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characteristic: sequencing method

characteristic: source material identifiers


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characteristic: INSDC status

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:893-423

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Stromsund

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: TAGCACG,AACGCTA

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:893-424

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Dalarna, Alvdalen

text: oral cavity

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characteristic: host body product

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characteristic: host body site

text: brown bear

characteristic: host common name

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characteristic: library construction method

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text: TTACAGT,GGTATCG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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text: public

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:893-425

characteristic: Submitter Id

characteristic: adapters

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text: mammalian host

characteristic: environment (biome)

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characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dalarna, Orsa

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: AACGCTA,TTACAGT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:893-426

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Jamtland, Harjedalen

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

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text: ATCGATT,TGGCCAT

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

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characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:894-427

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Dalarna, unknown

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: CAGTCAA,ATTGGCA

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:894-428

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Jamtland, Harjedalen

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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characteristic: host-associated environmental package

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characteristic: library size

text: GCTAGCC,ATCGATT

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:894-429

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Harjedalen

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: CAGTCAA,TGGCCAT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:894-430

text: CAAGCAGAAGACGGCATACGAGATAATCTTCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Dalarna, Mora

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

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text: TGACTGG,CGATGTA

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:894-431

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dalarna, Rattvik

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.

text: TGGCCAT,ACTGCGT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:894-432

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Norrbotten, Jokkmokk

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

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text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: ATTGGCA,GGTATCG

characteristic: multiplex identifiers

text: Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758-15763.

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:895-433

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gavleborg, Ljusdal

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: GTCATAC,CAGTCAA

text: oral metagenome

text: Wild animal oral microbiomes reflect the history of human antibiotics use

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:895-434

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Jamtland, Stromsund

text: oral cavity

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characteristic: host body product

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text: brown bear

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characteristic: host-associated environmental package

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text: CAATTGC,ATTGGCA

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:895-435

characteristic: Submitter Id

characteristic: adapters

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text: mammalian host

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Stromsund

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: TAGCACG,GCTAGCC

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:895-437

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Dalarna, Mora

text: oral cavity

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characteristic: host body product

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text: brown bear

characteristic: host common name

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text: TGGCCAT,GTCATAC

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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text: public

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:895-436

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dalarna, Mora

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: GCCAATG,TGGCCAT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:896-438

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Jamtland, Berg

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

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text: CGATGTA,GTCATAC

characteristic: multiplex identifiers

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:896-439

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Harjedalen

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: CGATGTA,TAGCACG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:896-441

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Norrbotten, Pajala

text: oral cavity

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characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

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text: GCTAGCC,CAATTGC

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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text: public

characteristic: INSDC status

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:896-440

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dalarna, Alvdalen

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: GTCATAC,TAGCACG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:896-442

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Gavleborg, Ljusdal

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

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text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: TGACTGG,GCCAATG

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:897-443

characteristic: Submitter Id

characteristic: adapters

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Norrbotten, Gallivare

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: CAATTGC,TGGCCAT

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:897-444

text: CAAGCAGAAGACGGCATACGAGATAATCTTCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT

text: mammalian host

text: mouth

text: dental calculus

text: Sweden

text: Uppsala, Osthammar

text: oral cavity

text: dental calculus

characteristic: host body product

text: tooth

characteristic: host body site

text: brown bear

characteristic: host common name

characteristic: host subject id

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

characteristic: library construction method

characteristic: library reads sequenced

characteristic: library size

text: GCCAATG,ATTGGCA

characteristic: multiplex identifiers

characteristic: nucleic acid extraction

text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:897-445

characteristic: Submitter Id

characteristic: adapters

text: not collected

characteristic: collection date

text: mammalian host

characteristic: environment (biome)

text: mouth

characteristic: environment (feature)

text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Norrbotten, unknown

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

text: Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harb Protoc. 2010(6):pdb.prot5448.

text: ACTGCGT,GGTATCG

text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: UPPSALA UNIVERSITY

text: public

text: ena-SAMPLE-TAB-17-06-2021-13:24:27:897-446

text: mammalian host

text: mouth

text: dental calculus

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characteristic: library construction method

characteristic: library reads sequenced

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text: TGGCCAT,GGTATCG

characteristic: multiplex identifiers

text: Dabney J et al. 2013. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc Natl Acad Sci. 110(39):15758-15763.

characteristic: nucleic acid extraction

text: oral metagenome

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characteristic: sequencing method

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characteristic: Submitter Id

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text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Dalarna, Rattvik

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

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text: TTACAGT,GCTAGCC

text: oral metagenome

text: Wild animal oral microbiomes reflect the history of human antibiotics use

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:897-448

text: mammalian host

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text: oral metagenome

characteristic: organism

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text: Gavleborg, Bollnas

characteristic: geographic location (region and locality)

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text: oral metagenome

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text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:898-450

text: mammalian host

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text: Sweden

text: Jamtland, Harjedalen

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text: oral metagenome

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characteristic: sequencing method

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characteristic: Submitter Id

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characteristic: geographic location (country and/or sea)

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text: Vasterbotten, Vilhelmina

characteristic: geographic location (region and locality)

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text: host-associated

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text: oral metagenome

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text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:898-452

text: mammalian host

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characteristic: host body product

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text: TGGCCAT,GCCAATG

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text: oral metagenome

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characteristic: sequencing method

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characteristic: Submitter Id

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characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Gavleborg, Ljusdal

characteristic: geographic location (region and locality)

text: oral cavity

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text: host-associated

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text: oral metagenome

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text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:899-455

text: mammalian host

text: mouth

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text: Jamtland, Harjedalen

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characteristic: host body product

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text: oral metagenome

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text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:899-454

characteristic: Submitter Id

characteristic: adapters

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text: mammalian host

characteristic: environment (biome)

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Jamtland, Stromsund

characteristic: geographic location (region and locality)

text: oral cavity

characteristic: host body habitat

text: dental calculus

text: tooth

text: brown bear

text: host-associated

text: metagenome

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text: oral metagenome

text: oral metagenome

text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:899-456

text: mammalian host

text: mouth

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characteristic: host body product

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text: oral metagenome

characteristic: organism

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text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers


characteristic: ENA-CHECKLIST

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text: public

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:899-457

characteristic: Submitter Id

characteristic: adapters

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text: mammalian host

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text: dental calculus

characteristic: environment (material)

text: Sweden

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Vasternorrland, Ornskoldsvik

characteristic: geographic location (region and locality)

text: oral cavity

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text: CAGTCAA,AACGCTA

text: oral metagenome

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text: Illumina NovaSeq PE100


characteristic: ENA-CHECKLIST

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text: UPPSALA UNIVERSITY

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text: ena-SAMPLE-TAB-17-06-2021-13:24:27:899-458

text: CAAGCAGAAGACGGCATACGAGATAATCTTCGTGACTGGAGTTCAGACGTGT,AATGATACGGCGACCACCGAGATCTACACACCAACTACACTCTTTCCCTACACGACGCTCTT

text: mammalian host

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text: TGACTGG,TGACTGG

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text: oral metagenome

characteristic: organism

characteristic: project name

text: oral metagenome

text: Illumina NovaSeq PE100

characteristic: sequencing method

characteristic: source material identifiers