characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colon carcinoma

text: not available

text: human

characteristic: description

text: adult

text: colon carcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

text: colon

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: tumor grade

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy

characteristic: tumor type


status: PUBLIC

tag: attribute

text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:THE JACKSON LABORATORY

unit: year

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: Protocols: PDX models were generated using subcutaneous tumor implantation in female NOD.Cg-Prkdc<scid> Il2rg<tm1Wjl>/SzJ (NSG; JAX strain 005557) host mice. Tumors were grown, collected, and fragmented for serial passage in NSG mice. Tumor samples at described passage numbers were taken for expression analysis. Tissues preserved in RNAlater were homogenized in TRIzol (ThermoFisher Scientific) using a gentleMACS dissociator (Miltenyi Biotec Inc). Total RNA was isolated using the miRNeasy Mini kit (Qiagen) according to manufacturer’s protocols, including the optional DNase digest step. RNA quality and concentration were assessed using the RNA 6000 Nano LabChip assay on the 2100 Bioanalyzer instrument and Nanodrop 2000 spectrophotometer (Thermo Scientific). Non-stranded libraries were constructed using TruSeq RNA Library Prep Kit v2 (Illumina). PolyA containing mRNA was isolated using oligo-dT magnetic beads, followed by RNA fragmentation, first and second strand cDNA synthesis, ligation of Illumina-specific adapters containing a unique barcode sequence for each library, and PCR amplification. Libraries were checked for quality and concentration using the DNA 1000 assay (Agilent Technologies) and quantitative PCR (KAPA Biosystems), according to the manufacturers’ instructions.

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

characteristic: passage number

text: colon

text: Homo sapiens

text: female

characteristic: sex

characteristic: title

text: Not Specified

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

text: ovary

characteristic: sampling site

text: Homo sapiens

text: female

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: lung

text: Homo sapiens

text: female

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colon carcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: colon carcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: passage number

text: other

text: Homo sapiens

text: female

characteristic: sex

characteristic: title

text: IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon carcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: colon

text: liver

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: tumor grade

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not available

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

characteristic: passage number

text: lung

text: Homo sapiens

text: female

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: colon

text: colon

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

characteristic: title

text: Not Specified

text: Not Specified


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colon adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: colon adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

text: lymph node

text: Homo sapiens

text: female

text: Grade:Intermediate

characteristic: tumor grade

text: Not Specified

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not available

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: not available

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

characteristic: passage number

text: liver

characteristic: sampling site

text: Homo sapiens

text: female

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not available

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: not available

text: adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

text: lung

text: Homo sapiens

text: female

characteristic: sex

characteristic: title

characteristic: tumor grade

text: IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: liver

text: Homo sapiens

text: male

text: IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: passage number

text: retroperitoneum

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: lymph node

text: Homo sapiens

text: male

characteristic: title

text: IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: cancer

text: not available

text: human

characteristic: description

text: adult

text: Not specified

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

text: colon

text: Homo sapiens

text: male

text: Not Specified

characteristic: tumor stage

text: Not Specified

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: passage number

text: colon

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Not Specified


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not available

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: colon

text: Homo sapiens

text: male

characteristic: title

characteristic: tumor grade

text: Not Specified

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: passage number

text: liver

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colon adenocarcinoma

text: not available

text: human

characteristic: description

text: adult

text: colon adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: liver

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: passage number

text: colon

text: Homo sapiens

text: male

characteristic: title

text: Not Specified

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: omentum

text: Homo sapiens

text: male

characteristic: tumor grade

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: colon

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: Not Specified

text: Not Specified


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colon adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: colon adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: passage number

text: lung

text: Homo sapiens

text: male

characteristic: title

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

text: stomach

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: colon adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: colon adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: other

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: colon adenocarcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: colon adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: passage number

text: liver

text: Homo sapiens

text: male

characteristic: title

text: Not Specified

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not available

text: ArrayExpress

characteristic: broker name

text: colon adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: not available

text: colon adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: colon

text: liver

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not available

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: not available

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: colon

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

characteristic: tumor grade

text: AJCC IV

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not available

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: treatment naive

text: human

characteristic: description

text: not available

text: adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: passage number

text: liver

text: Homo sapiens

text: male

characteristic: title

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not available

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: not available

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: liver

characteristic: sampling site

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not available

text: ArrayExpress

characteristic: broker name

text: colon adenocarcinoma

text: treatment naive

text: human

characteristic: description

text: not available

text: colon adenocarcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: colon

text: Homo sapiens

text: not available

characteristic: sex

characteristic: tumor grade

text: AJCC IIA

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not available

characteristic: age

text: ArrayExpress

text: colon adenocarcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: not available

characteristic: developmental stage

text: colon adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

characteristic: passage number

text: liver

characteristic: sampling site

text: Homo sapiens

text: not available

characteristic: title

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: gastrointestinal stromal tumor

text: not available

text: human

characteristic: description

text: adult

text: gastrointestinal stromal tumor

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: duodenum

text: liver

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: squamous cell carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: head and neck squamous cell carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: head

characteristic: organism part

characteristic: passage number

text: head

text: Homo sapiens

text: female

characteristic: sex

text: Not Specified

text: Not Specified


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: renal cell carcinoma

text: not available

text: human

characteristic: description

text: adult

text: renal cell carcinoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: kidney

text: kidney

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: title

text: Not Specified

text: Not Specified


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: renal cell carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: renal cell carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: kidney

text: Homo sapiens

text: male

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9153:TM00194_LG0627PE569P0000P1030P2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lung small cell carcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: lung small cell carcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

characteristic: passage number

text: pleural cavity

text: Homo sapiens

text: female

characteristic: sex

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: lung squamous cell carcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: lung

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: title

text: Not Specified

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lung squamous cell carcinoma

text: treatment naive

text: human

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: lung

text: Homo sapiens

text: male

characteristic: tumor grade

text: AJCC IIIA

characteristic: tumor stage

text: Primary Malignancy

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: lung adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

characteristic: passage number

text: lung

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: lung adenocarcinoma

text: treatment naive

text: human

characteristic: description

text: adult

text: lung adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: pleural cavity

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: title

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: squamous cell carcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: squamous cell carcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: neck

text: soft tissue

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: ovary

characteristic: organism part

characteristic: passage number

text: neck

text: Homo sapiens

text: female

characteristic: sex

text: Grade:high

characteristic: tumor grade

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ovary

text: liver

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: title

text: Grade:high

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not available

text: ArrayExpress

characteristic: broker name

text: ovary papillary carcinoma

text: not treatment naive

text: human

characteristic: description

text: not available

text: ovary papillary carcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: ovary

characteristic: organism part

characteristic: passage number

text: omentum

text: Homo sapiens

text: female

text: Grade:high

text: AJCC IIIC

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

text: not available

characteristic: age

text: ArrayExpress

text: pancreas adenocarcinoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: not available

characteristic: developmental stage

text: pancreas adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: pancreas

text: Homo sapiens

text: male

characteristic: sex

text: Not Specified

text: Not Specified


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: rectum adenocarcinoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: rectum adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: rectum

characteristic: organism part

text: rectum

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: title

characteristic: tumor grade

text: AJCC IIA

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: adenocarcinoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: rectum

characteristic: passage number

text: liver

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: not available

text: ArrayExpress

characteristic: broker name

text: adenocarcinoma

text: not available

text: human

characteristic: description

text: not available

text: adenocarcinoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: rectum

characteristic: organism part

text: liver

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: melanoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: passage number

text: colon

text: Homo sapiens

text: female

characteristic: title

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: melanoma

text: not available

text: human

characteristic: description

text: adult

text: melanoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: skin

text: Homo sapiens

text: male

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: melanoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: liver

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: melanoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: melanoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: passage number

text: chest wall

text: Homo sapiens

text: male

characteristic: title

text: Not Specified

text: Primary Malignancy


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: melanoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: skin

text: Homo sapiens

text: male

text: III

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: melanoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: melanoma

text: not available

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

text: bone

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: melanoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: melanoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: passage number

text: skin

text: Homo sapiens

text: male

characteristic: title

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: melanoma

text: not treatment naive

text: human

characteristic: description

text: adult

text: melanoma

text: not available

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: lung

text: Homo sapiens

text: male

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: sarcoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: sarcoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

text: Homo sapiens

text: soft tissue

characteristic: organism part

text: lung

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: rhabdomyosarcoma

text: treatment naive

text: human

characteristic: description

text: adult

text: rhabdomyosarcoma

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: soft tissue

characteristic: passage number

text: retroperitoneum

text: Homo sapiens

text: male

characteristic: title

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: sarcoma

characteristic: clinical history

text: not available

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: sarcoma

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: soft tissue

text: lung

text: Homo sapiens

text: male

characteristic: tumor grade

text: AJCC IV

characteristic: tumor stage

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: rhabdoid cancer

text: not treatment naive

text: human

characteristic: description

text: juvenile stage

text: rhabdoid cancer

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: soft tissue

characteristic: organism part

text: liver

characteristic: sampling site

text: Homo sapiens

text: male

characteristic: sex

text: AJCC IV

text: Metastatic


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: sarcoma

characteristic: clinical history

text: not treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: juvenile stage

characteristic: developmental stage

text: malignant peripheral nerve sheath tumor

characteristic: disease

text: not available

characteristic: ethnic group

text: Not Reported

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: soft tissue

characteristic: passage number

text: spine

text: Homo sapiens

text: male

characteristic: title

text: Grade:high

characteristic: tumor grade

text: Not Specified

text: Recurrent/Relapse


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: tonsil cancer

text: not available

text: human

characteristic: description

text: adult

text: tonsil cancer

text: not available

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: tonsil

characteristic: organism part

text: head

text: Homo sapiens

text: male

text: Not Specified

characteristic: tumor stage

text: Not Specified

characteristic: tumor type


text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: invasive ductal carcinoma

characteristic: clinical history

text: treatment naive

characteristic: clinical information

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

characteristic: disease

text: Other

characteristic: ethnic group

text: Hispanic

characteristic: ethnicity

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: sampling site

text: Homo sapiens

text: female

characteristic: sex

text: AJCC IIIA

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Collected by third party; protocol not provided Collected by third party; protocol not provided Provided by third party: NuGen Ovation(R) RNA-Seq System V2 used to generate library using total RNA per manufacturer's instructions.

characteristic: description

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Hispanic

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Breast

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: female

text: Breast

characteristic: specimen site

characteristic: title

characteristic: tumor grade

text: Primary Malignancy


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Hispanic

characteristic: ethnic group

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: Breast

text: White

text: Homo sapiens

text: female

characteristic: sex

text: Breast

text: No

characteristic: treatment naive

characteristic: tumor stage

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Breast

characteristic: primary site

text: Black

characteristic: race

text: Homo sapiens

text: female

text: Breast

text: Yes

text: AJCC IIIB

text: Primary Malignancy


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: Breast

text: White

text: Homo sapiens

text: female

characteristic: sex

text: Breast

characteristic: specimen site

characteristic: title

text: Yes

characteristic: tumor grade

text: Not Specified

text: Primary Malignancy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: breast lobular carcinoma

text: breast lobular carcinoma

text: cancer

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: breast

text: Breast

text: White

text: Homo sapiens

text: female

text: Not specified/unknown

text: No

characteristic: treatment naive

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: breast carcinoma

text: breast carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: Breast

characteristic: primary site

text: Black

characteristic: race

text: Homo sapiens

text: female

text: Breast

text: Yes

text: Recurrent/Relapse


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Hispanic

text: Homo sapiens

text: Homo sapiens

text: breast

text: Breast

text: White

text: Homo sapiens

text: female

characteristic: sex

text: Breast

characteristic: specimen site

characteristic: title

text: No

characteristic: tumor grade

text: IIIA

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: Breast

text: White

text: Homo sapiens

text: female

text: Breast

text: No

characteristic: treatment naive

text: AJCC IV

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: breast adenocarcinoma

text: breast adenocarcinoma

text: cancer

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Breast

characteristic: primary site

text: Not Reported

characteristic: race

text: Homo sapiens

text: female

characteristic: sex

text: Not specified

characteristic: specimen site

text: No

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BIMSB/BIH Scientific Genomics Platforms Max Delbruck Center for Molecular Medicine

unit: day

characteristic: age

text: ArrayExpress

text: plant cell

characteristic: cell type

text: thale cress

characteristic: common name

characteristic: cultivar

text: Protocols: Five 10-days-old Arabidopsis seedlings were collected into 1,5ml screw cap tubes with 5 glass beads, precooled in liquid nitrogen. Sample homogenizing was done by adding one half of TRI-Reagent (Sigma-Aldrich, 1ml per 100mg) to each sample following sample disruption by using Precellys 24 Lysis & Homogenization instrument for 30sec and 4000rpm. After homogenization total-RNA was extracted by adding 2nd half of TRI-Reagent and the protocol was proceeded according to the manufacture. To remove any co-precipitated DNA, a DNase-I digest was performed by using 1U DNase-I (NEB) in a total Volume of 100ul. Total-RNA was cleaned-up by LiCL-Precipitation using 10µl 8M LiCL and 3Vol 100% Ethanol pa. incubating at -20°C over-night. Following a spin down at 4°C, 13.000rpm for 30min and 2 washing steps with 70% Ethanol pa. The RNA pellet was dried on ice for 1h and resuspended in 40ul DEPC-H2O incubating at 56°C for 5min. The quality of total-RNA was checked by Agilent TapeStation using RNA ScreenTape. Concentration was measured with Qubit RNA BR Assay Kit from Thermo Fisher Scientific.

characteristic: description

text: seedling

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BIMSB/BIH Scientific Genomics Platforms Max Delbruck Center for Molecular Medicine

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: plant cell

text: thale cress

text: seedling

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: age

text: ArrayExpress

text: plant cell

text: thale cress

text: Protocols: Seedlings and fully developed flowers from wild type plants were collected and snap-frozen in liquid nitrogen. Plants were grown under standard conditions. The frozen tissue was carefully crushed to small pieces in liquid nitrogen using a mortar and pestle. The frozen tissue pieces were then added to a gentleMACS C tube together with 5 ml of Honda buffer (2.5 % Ficoll 400, 5 % Dextran T40, 0.4 M sucrose, 10 mM MgCl2 , 1µM DTT, 0.5% Triton X-100, 1 tablet/50mL cOmplete Protease Inhibitor Cocktail, 0.4 U/µl RiboLock, 25 mM Tris-HCl, pH 7.4). The C tubes were put onto a gentleMACS Dissociator and the program “arabidopsis1” (Supplemental Table X) was run at 4°C to disrupt the tissue and release the nuclei. The resulting suspension was then filtered through a 70 µm strainer and centrifuged at 1000 g for 6 min at 4°C. The pellet was resuspended carefully in 500 µl Honda buffer, filtered through a 35 µm strainer and stained with 3x staining buffer (12 µM DAPI, 0.4 U/µl Ambion RNase Inhibitor, 0.2 U/µl SUPERaseIn RNase Inhibitor in PBS). Single nuclei were sorted by gating on the DAPI peaks with a BD FACS Aria III (200,000 - 400,000 events) into a small volume of landing buffer (4% BSA in PBS, 2 U/µl Ambion RNase Inhibitor, 1 U/µl SUPERaseIn RNase Inhibitor). Sorted nuclei were additionally stained with NucBlue from the Invitrogen Ready Probes Cell Viability Imaging Kit (Blue/Red), then counted and checked for integrity in Neubauer counting chambers. The NucBlue and DAPI co-stained single nuclei suspension (60 cells/µL) was distributed to eight wells of a 384-well source plate (Cat. No. 640018, Takara) and then dispensed into a barcoded SMARTer ICELL8 3’ DE Chip (Cat. No. 640143, Takara) by an ICELL8 MultiSample NanoDispenser (MSND, Takara). Chips were centrifuged at 500 g for 5 min at 4°C. Nanowells were imaged using the ICELL8 Imaging Station (Takara). After imaging, the chip was sealed, placed in a pre-cooled freezing chamber, and stored at −80 °C for at least 2 hrs. The CellSelect software was used to identify nanowells that contained a single nucleus. One chip yielded 800 - 1200 single-nucleus-nanowells. These nanowells were selected for subsequent targeted deposition of 50 nL/nanowell RT-PCR reaction mix from the SMARTer ICELL8 3’ DE Reagent Kit (Cat. No. 640167, Takara) using the MSND. After RT and amplification in a Chip Cycler, barcoded cDNA products from nanowells were pooled by means of the the SMARTer ICELL8 Collection Kit (Cat. No. 640048, Takara). cDNA was concentrated using the Zymo DNA Clean & Concentrator kit (Cat. No. D4013, Zymo Research) and purified with AMPure XP beads. Afterwards, cDNA was used to construct Nextera XT (Illumina) DNA libraries followed by AMPure XP bead purification. Qubit dsDNA HS Assay Kit, KAPA Library Quantification Kit for Illumina Platforms and Agilent HighSensitivity D1000 ScreenTape Assay were used for library quantification and quality assessment.

text: seedling

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana


text: public

text: ArrayExpress

text: plant cell

characteristic: cell type

text: thale cress

characteristic: common name

characteristic: cultivar

characteristic: description

text: mixed flower stages before flower stage 13

characteristic: developmental stage

text: wild type genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: inflorescence except open flowers

text: Arabidopsis thaliana


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

text: Protocols: Collected by third party. mRNA was extracted by third party from mouse-depleted PDX leukemia and lymphoma cells using magnetic microbeads (uMACS mRNA Isolation Kit, Miltenyi Biotec). Non-stranded RNA-seq libraries were generated by third party using the TruSeq RNA Sample Prep Kit (Illumina) on a Sciclone NGS platform (Perkin Elmer). mRNA underwent fragmentation, cDNA synthesis, and next-generation library synthesis via end repair, polyadenylation, adapter ligation, and PCR amplification.

text: adult

text: acute myeloid leukemia

characteristic: diagnosis clinical

text: acute myeloid leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: bone marrow

characteristic: specimen site

characteristic: title

text: yes

characteristic: treatment naive

text: primary malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: acute myeloid leukemia

text: acute myeloid leukemia

text: cancer

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: bone marrow

text: Not Reported

text: Homo sapiens

text: male

text: bone marrow

text: yes

text: primary malignancy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: diagnosis clinical

text: acute myeloid leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: female

characteristic: sex

text: bone marrow

characteristic: specimen site

text: no

text: recurrent/relapse


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: acute myeloid leukemia

text: acute myeloid leukemia

text: cancer

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

text: White

text: Homo sapiens

text: female

text: bone marrow

characteristic: title

text: recurrent/relapse

characteristic: tumor type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: diagnosis clinical

text: acute myeloid leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: bone marrow

text: White

text: Homo sapiens

text: male

text: bone marrow

text: no

characteristic: treatment naive

text: recurrent/relapse


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: acute myeloid leukemia

text: acute myeloid leukemia

text: cancer

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: specimen site

text: no

text: refractory


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: T-cell adult acute lymphocytic leukemia

characteristic: diagnosis clinical

text: T-cell adult acute lymphocytic leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Hispanic

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

text: White

text: Homo sapiens

text: female

text: bone marrow

characteristic: title

text: yes


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: B-cell lymphoma

text: B-cell lymphoma

text: cancer

text: Not Reported

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: bone marrow

text: White

text: Homo sapiens

text: male

text: blood

text: no

characteristic: treatment naive

text: refractory

characteristic: tumor type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: myelodysplastic syndrome

characteristic: diagnosis clinical

text: myelodysplastic syndrome

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

characteristic: primary site

text: Not Reported

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: bone marrow

characteristic: specimen site

text: yes

text: refractory


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: acute lymphocytic leukemia

text: acute lymphocytic leukemia

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: bone marrow

text: White

text: Homo sapiens

text: female

text: bone marrow

characteristic: title

text: yes

text: primary malignancy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: B-cell adult acute lymphocytic leukemia

characteristic: diagnosis clinical

text: B-cell adult acute lymphocytic leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: bone marrow

characteristic: primary site

text: White

text: Homo sapiens

text: male

text: bone marrow

text: yes

characteristic: treatment naive

text: primary malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: B-cell adult acute lymphocytic leukemia

text: B-cell adult acute lymphocytic leukemia

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

text: White

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: specimen site

text: yes

text: primary malignancy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: B-cell adult acute lymphocytic leukemia

characteristic: diagnosis clinical

text: B-cell adult acute lymphocytic leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: bone marrow

text: White

text: Homo sapiens

text: female

text: bone marrow

characteristic: title

text: yes

text: primary malignancy


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: acute myeloid leukemia

text: acute myeloid leukemia

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

characteristic: primary site

text: Not Reported

text: Homo sapiens

text: male

text: bone marrow

text: no

characteristic: treatment naive

text: recurrent/relapse

characteristic: tumor type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: diagnosis clinical

text: acute myeloid leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

text: White

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: bone marrow

characteristic: specimen site

text: no

text: refractory


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: acute myeloid leukemia

text: acute myeloid leukemia

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: bone marrow

text: White

text: Homo sapiens

text: male

text: bone marrow

characteristic: title

text: no

text: primary malignancy


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: diffuse large B-cell lymphoma

characteristic: diagnosis clinical

text: diffuse large B-cell lymphoma

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: other

text: other

characteristic: primary site

text: White

text: Homo sapiens

text: male

text: other

text: yes

characteristic: treatment naive

text: primary malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: mantle cell lymphoma

text: mantle cell lymphoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lymph node

text: lymph node

text: White

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: specimen site

text: no

text: recurrent/relapse


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: E-MTAB-9176:J000106572_DFTL-69579-V3-mCLP

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: adult T-cell leukemia

characteristic: diagnosis clinical

text: adult T-cell leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lymph node

characteristic: organism part

text: lymph node

text: Black

text: Homo sapiens

text: female

text: blood

characteristic: title

text: yes

text: primary malignancy


characteristic: ENA-CHECKLIST

text: THE JACKSON LABORATORY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

text: adult

text: mature T-cell and NK-cell lymphoma

text: mature T-cell and NK-cell lymphoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lymph node

text: lymph node

characteristic: primary site

text: White

text: Homo sapiens

text: male

text: blood

text: no

characteristic: treatment naive

text: recurrent/relapse

characteristic: tumor type


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE JACKSON LABORATORY

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: acute leukemia

characteristic: diagnosis clinical

text: acute leukemia

characteristic: diagnosis initial

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: bone marrow

text: White

characteristic: race

text: Homo sapiens

text: male

characteristic: sex

text: blood

characteristic: specimen site

text: yes

text: primary malignancy


E-MTAB-9189:Sample 1

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9189:Sample 1

tag: Namespace:Laboraty of Molecular Medicine and Genomics

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: dog

text: Protocols: Biopsy from animal tissue. DNA extraction protocol from Qiagen kit Illumina Nextera XT DNA kit was used for library construction

text: adult

text: wild type genotype

characteristic: genotype

text: Canis lupus familiaris

characteristic: organism

text: Canis lupus familiaris

text: not available

characteristic: organism part

text: Canis lupus familiaris

text: not available

text: fresh specimen

characteristic: specimen with known storage state

text: Sample 1

characteristic: title


E-MTAB-9189:Sample 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboraty of Molecular Medicine and Genomics

text: public

text: E-MTAB-9189:Sample 2

text: ArrayExpress

text: dog

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: individual

text: Canis lupus familiaris

text: Canis lupus familiaris

text: not available

text: Canis lupus familiaris

text: not available

text: paraffin specimen

text: Sample 2


characteristic: ENA-CHECKLIST

text: GENOME INSTITRUTE OF SINGAPORE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:GENOME INSTITRUTE OF SINGAPORE

text: metagenome

text: metagenome


text: IPK-Gatersleben

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: domesticated barley

text: GBS raw data of barley accession BCC_1344

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf

characteristic: tissue


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_192_1

text: Hordeum vulgare subsp. vulgare

characteristic: organism

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_710

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_1367_2

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


characteristic: ENA-LAST-UPDATE

text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_472

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


characteristic: External Id

text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_763

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

characteristic: common name

text: GBS raw data of barley accession BCC_683

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_766

characteristic: description

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_741

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

characteristic: bio material

text: domesticated barley

text: GBS raw data of barley accession HOR_10538

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_747

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10543

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession BCC_778

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10701

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10860

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10166

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10255

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10273

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10274

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11275

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10281

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10302

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11529

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10714

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_10873

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11063

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11579

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11234

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11618

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11640

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11247

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11256

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11291

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11527

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11530

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11559

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11769

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11571

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11773

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11633

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11641

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11798

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11689

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11830

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11718

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11747

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11832

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11768

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12008

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12240

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11770

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12254

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11799

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11809

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12260

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_11828

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12275

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12304

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12343

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12251

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12346

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12253

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12265

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12350

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12379

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12344

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1323

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12354

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_13585

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12368

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_13891

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12369

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_14489

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_12370

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1490

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_15146

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1558

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1322

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_17788

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_13468

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1969

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_2236

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1555

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_2350

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_1564

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_2377

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_22161

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_2378

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_2235

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf


text: IPK-Gatersleben

text: public

text: domesticated barley

text: GBS raw data of barley accession HOR_2381

text: Hordeum vulgare subsp. vulgare

text: Hordeum vulgare subsp. vulgare

text: leaf