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characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa923;condition:3R4F;cage:126;month:4;kit=1-z;sampling=individual;animal:920356;


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

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text: ENVO:00002003 fecal material

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unit: DD

characteristic: geographic location (latitude)

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characteristic: sequencing method

text: sample:sa924;condition:3R4F;cage:31;month:3;kit=1-z;sampling=individual;animal:920470;

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: sample:sa925;condition:CHTP;cage:60;month:6;kit=1-z;sampling=individual;animal:920158;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: ENVO:00002003 fecal material

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text: sample:sa926;condition:Sham;cage:15;month:6;kit=1-z;sampling=individual;animal:920085;


characteristic: ENA-LAST-UPDATE

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characteristic: title


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text: sample:sa928;condition:3R4F;cage:31;month:3;kit=1-z;sampling=individual;animal:920113;


characteristic: ENA-LAST-UPDATE

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text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

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characteristic: geographic location (latitude)

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text: sample:sa929;condition:Switch-CHTP;cage:115;month:6;kit=1-z;sampling=individual;animal:920530;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: sample:sa930;condition:CHTP;cage:54;month:3;kit=1-z;sampling=individual;animal:920854;

characteristic: title


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text: ENVO:00002003 fecal material

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text: sample:sa931;condition:THS;cage:76;month:3;kit=1-z;sampling=individual;animal:920044;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

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text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

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characteristic: geographic location (latitude)

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text: PRJEB39465 (ERP122979)

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text: sample:sa932;condition:CHTP;cage:58;month:6;kit=1-z;sampling=individual;animal:920452;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

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text: sample:sa933;condition:THS;cage:86;month:4;kit=1-z;sampling=individual;animal:920447;

characteristic: title


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: ENVO:00002003 fecal material

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text: mouse gut metagenome

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text: sample:sa934;condition:Switch-CHTP;cage:106;month:4;kit=1-z;sampling=individual;animal:920409;


characteristic: ENA-LAST-UPDATE

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text: Sham

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text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

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characteristic: geographic location (latitude)

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text: host-associated

text: metagenome

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text: PRJEB39465 (ERP122979)

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text: Illumina

text: sample:sa935;condition:Sham;cage:11;month:4;kit=1-z;sampling=individual;animal:920319;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: sample:sa936;condition:Sham;cage:9;month:3;kit=1-z;sampling=individual;animal:920029;

characteristic: title


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text: PHILIP MORRIS INTERNATIONAL R&D

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text: ENVO:00002003 fecal material

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text: Singapore

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text: host-associated

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text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa937;condition:3R4F;cage:124;month:4;kit=1-z;sampling=individual;animal:920446;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: Sham

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text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (latitude)

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text: Illumina

text: sample:sa938;condition:Sham;cage:9;month:3;kit=1-z;sampling=individual;animal:920628;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

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characteristic: sequencing method

text: sample:sa939;condition:Switch-CHTP;cage:109;month:4;kit=1-z;sampling=individual;animal:920273;

characteristic: title


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text: sample:sa940;condition:Sham;cage:16;month:6;kit=1-z;sampling=individual;animal:920134;


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text: ENVO:00002003 fecal material

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characteristic: geographic location (latitude)

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text: sample:sa941;condition:CHTP;cage:55;month:4;kit=1-z;sampling=individual;animal:920389;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: sample:sa942;condition:Cess;cage:93;month:4;kit=1-z;sampling=individual;animal:920927;

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: ENVO:00002003 fecal material

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text: sample:sa943;condition:THS;cage:81;month:6;kit=1-z;sampling=individual;animal:920132;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (latitude)

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text: host-associated

text: metagenome

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text: Illumina

text: sample:sa944;condition:CHTP;cage:59;month:6;kit=1-z;sampling=individual;animal:920400;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

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text: sample:sa945;condition:Sham;cage:12;month:4;kit=1-z;sampling=individual;animal:920014;

characteristic: title


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text: ENVO:00002003 fecal material

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text: Singapore

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text: PRJEB39465 (ERP122979)

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text: sample:sa946;condition:Cess;cage:99;month:6;kit=1-z;sampling=individual;animal:920189;


characteristic: ENA-LAST-UPDATE

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: CHTP

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text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (latitude)

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text: host-associated

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text: Illumina

text: sample:sa947;condition:CHTP;cage:53;month:3;kit=1-z;sampling=individual;animal:920263;


characteristic: ENA-CHECKLIST

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text: PHILIP MORRIS INTERNATIONAL R&D

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characteristic: sequencing method

text: sample:sa948;condition:Sham;cage:14;month:6;kit=1-z;sampling=individual;animal:920211;

characteristic: title


characteristic: ENA-LAST-UPDATE

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text: PHILIP MORRIS INTERNATIONAL R&D

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text: public

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characteristic: chemical administration

characteristic: collection date

text: ENVO:01001406 laboratory facility

characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

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text: sample:sa949;condition:Cess;cage:91;month:4;kit=1-z;sampling=individual;animal:920016;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

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characteristic: SRA accession

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text: THS

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

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text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa950;condition:THS;cage:78;month:4;kit=1-z;sampling=individual;animal:920794;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: Sham

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: host taxid

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text: PRJEB39465 (ERP122979)

characteristic: project name

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text: Illumina

characteristic: sequencing method

text: sample:sa951;condition:Sham;cage:10;month:3;kit=1-z;sampling=individual;animal:920428;

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

text: public

characteristic: chemical administration

characteristic: collection date

text: ENVO:01001406 laboratory facility

characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

characteristic: geographic location (country and/or sea)

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa952;condition:3R4F;cage:31;month:3;kit=1-z;sampling=individual;animal:920081;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CIBIO-INBIO RESEARCH CENTER IN BIODIVERSITY AND GENETIC RESOURCES

characteristic: Submitter Id

text: Madagascar periwinkle

characteristic: common name

text: Little Bright Eye

characteristic: cultivar

text: Leaf pair 2 from catharanthus Exterior Plant 1

characteristic: description

text: Catharanthus roseus

text: Catharanthus roseus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CIBIO-INBIO RESEARCH CENTER IN BIODIVERSITY AND GENETIC RESOURCES

characteristic: INSDC center name

text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 2 from catharanthus Exterior Plant 2

text: Catharanthus roseus

characteristic: organism

text: Catharanthus roseus

characteristic: title


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 2 from catharanthus Exterior Plant 3

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 2 from catharanthus Interior Plant 1

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 2 from catharanthus Interior Plant 2

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 2 from catharanthus Interior Plant 3

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 3 from catharanthus Exterior Plant 1

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 3 from catharanthus Exterior Plant 2

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 3 from catharanthus Exterior Plant 3

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 3 from catharanthus Interior Plant 1

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 3 from catharanthus Interior Plant 2

text: Catharanthus roseus

text: Catharanthus roseus


text: public

text: Madagascar periwinkle

text: Little Bright Eye

text: Leaf pair 3 from catharanthus Interior Plant 3

text: Catharanthus roseus

text: Catharanthus roseus


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

tag: Namespace:NATIONAL VETERINARY RESEARCH INSTITUTE

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M14


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M22


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M22COL


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M34


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M34COL


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M35


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M37


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M45


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M50COL


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M51


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M65COL


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M68


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M70


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M72


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M94X


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M105X


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M117


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M135


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M135COL


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M143


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M150


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M151


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M157


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M162


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M166


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M170


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M178COL


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M179


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M216


text: NATIONAL VETERINARY RESEARCH INSTITUTE

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli strain M225COL


text: public

tag: Namespace:Institute of Molecular Plant Sciences The University of Edinburgh

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples were collected from upper systemic leaves of TRVs infected plants at one week post infection and three weeks post infection. The collected samples were flash frozen in liquid nitrogen. Plants were grown in Levington F2+S professional growth compost in a controlled growth chamber (SANYO/Panasonic) at 22°C with 16-h light and 8-h dark periods for 4 weeks. Plants were infected at 4 weeks of age. After viral inoculations, the infected plants were maintained at 22°C for 2 days and then shifted to 29°C for long term. Total nucleic acid (TNA) extracts were prepared from leaf tissue by phenol-chloroform extraction as described in White and Kaper, 1989. Small RNA libraries were prepared from 1 μg of TNA using the Illumina TruSeq Small RNA Library Prep Kit and sequenced on the Illumina HiSeq 2500 platform with 50-base single end reads at Edinburgh Genomics (Edinburgh, UK).

characteristic: ecotype

text: long day length regimen

characteristic: environmental history

text: infected with TRV-35S (modified TRV)

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: Before infection: germinated and maintained at 22 deg for 4 weeks; post infection: maintained at 22 deg for 2 days and then shifted to 29 deg for long term.

characteristic: growth condition

text: Tobacco rattle virus

characteristic: infect

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

characteristic: organism part

text: Nicotiana benthamiana


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Molecular Plant Sciences The University of Edinburgh

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: long day length regimen

text: infected with TRV-35S (modified TRV)

text: wild type genotype

text: Tobacco rattle virus

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: description

text: long day length regimen

text: infected with TRV-35S-2M (modified TRV)

text: wild type genotype

text: Tobacco rattle virus

text: Nicotiana benthamiana

characteristic: organism

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana

characteristic: title


text: public

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: ecotype

text: long day length regimen

characteristic: environmental history

text: infected with TRV-GFP (modified TRV)

characteristic: environmental stress

text: wild type genotype

characteristic: genotype

text: Tobacco rattle virus

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: ArrayExpress

text: long day length regimen

text: infected with TRV-GFP-2M (modified TRV)

text: wild type genotype

characteristic: growth condition

text: Tobacco rattle virus

characteristic: infect

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

characteristic: organism part

text: Nicotiana benthamiana


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: long day length regimen

text: infected with wild type TRV

text: wild type genotype

text: Tobacco rattle virus

text: Nicotiana benthamiana

text: Nicotiana benthamiana

text: leaf

text: Nicotiana benthamiana


text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

text: public

text: house mouse

characteristic: common name

text: RNA-seq

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: cecum

characteristic: tissue type

text: sample:sa261;condition:CHTP;cage:55;month:4;animal:920389;

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa263;condition:Sham;cage:9;month:3;animal:920029;


text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa264;condition:THS;cage:80;month:6;animal:920605;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa265;condition:Cess;cage:91;month:4;animal:920016;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa266;condition:THS;cage:75;month:3;animal:920090;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa267;condition:Switch-CHTP;cage:115;month:6;animal:920982;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa268;condition:Cess;cage:99;month:6;animal:920126;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa269;condition:CHTP;cage:59;month:6;animal:920900;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa270;condition:Sham;cage:12;month:4;animal:920659;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa271;condition:Cess;cage:96;month:6;animal:920674;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa273;condition:3R4F;cage:39;month:6;animal:920305;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa274;condition:CHTP;cage:56;month:4;animal:920329;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa275;condition:Cess;cage:91;month:4;animal:920111;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa276;condition:CHTP;cage:60;month:6;animal:920652;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa277;condition:CHTP;cage:53;month:3;animal:920602;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa278;condition:3R4F;cage:123;month:4;animal:920961;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa279;condition:THS;cage:80;month:6;animal:920052;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa280;condition:Sham;cage:11;month:4;animal:920319;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa281;condition:3R4F;cage:123;month:4;animal:920709;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa282;condition:CHTP;cage:54;month:3;animal:920179;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa283;condition:Sham;cage:9;month:3;animal:920799;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa284;condition:Sham;cage:16;month:6;animal:920134;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa285;condition:THS;cage:82;month:6;animal:920710;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa286;condition:CHTP;cage:64;month:4;animal:920522;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa287;condition:Cess;cage:99;month:6;animal:920265;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa288;condition:THS;cage:86;month:4;animal:920031;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa289;condition:Switch-CHTP;cage:112;month:6;animal:920352;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa290;condition:3R4F;cage:31;month:3;animal:920288;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa291;condition:Cess;cage:96;month:6;animal:920889;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa292;condition:3R4F;cage:39;month:6;animal:920476;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa293;condition:CHTP;cage:56;month:4;animal:920928;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa294;condition:3R4F;cage:31;month:3;animal:920113;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa295;condition:CHTP;cage:54;month:3;animal:920074;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa296;condition:Sham;cage:10;month:3;animal:920428;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa297;condition:THS;cage:86;month:4;animal:920447;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa298;condition:Sham;cage:20;month:4;animal:920330;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa299;condition:Cess;cage:91;month:4;animal:920811;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa300;condition:Sham;cage:15;month:6;animal:920085;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa301;condition:THS;cage:77;month:4;animal:920860;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa302;condition:Cess;cage:93;month:4;animal:920958;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa303;condition:3R4F;cage:31;month:3;animal:920081;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa304;condition:CHTP;cage:58;month:6;animal:920879;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa305;condition:Switch-CHTP;cage:115;month:6;animal:920856;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa306;condition:3R4F;cage:124;month:4;animal:920482;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa307;condition:Sham;cage:16;month:6;animal:920106;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa308;condition:THS;cage:75;month:3;animal:920874;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa309;condition:3R4F;cage:36;month:6;animal:920901;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa310;condition:Cess;cage:99;month:6;animal:920189;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa311;condition:CHTP;cage:58;month:6;animal:920452;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa312;condition:Sham;cage:9;month:3;animal:920628;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa313;condition:THS;cage:81;month:6;animal:920622;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa314;condition:CHTP;cage:53;month:3;animal:920791;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa315;condition:THS;cage:86;month:4;animal:920384;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa316;condition:Sham;cage:14;month:6;animal:920275;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa317;condition:Switch-CHTP;cage:107;month:4;animal:920202;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa318;condition:3R4F;cage:38;month:6;animal:920032;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa319;condition:Cess;cage:98;month:6;animal:920563;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa320;condition:THS;cage:76;month:3;animal:920454;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa321;condition:THS;cage:78;month:4;animal:920794;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa322;condition:3R4F;cage:124;month:4;animal:920719;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa323;condition:Switch-CHTP;cage:107;month:4;animal:920616;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa324;condition:CHTP;cage:56;month:4;animal:920875;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa325;condition:Cess;cage:93;month:4;animal:920237;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa326;condition:3R4F;cage:32;month:3;animal:920201;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa327;condition:THS;cage:75;month:3;animal:920818;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa328;condition:THS;cage:82;month:6;animal:920801;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa329;condition:Sham;cage:15;month:6;animal:920197;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa330;condition:3R4F;cage:38;month:6;animal:920473;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa331;condition:CHTP;cage:56;month:4;animal:920837;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa332;condition:Cess;cage:96;month:6;animal:920569;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa333;condition:3R4F;cage:126;month:4;animal:920520;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa334;condition:THS;cage:76;month:3;animal:920289;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa335;condition:Sham;cage:15;month:6;animal:920866;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa336;condition:Switch-CHTP;cage:112;month:6;animal:920208;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa337;condition:3R4F;cage:38;month:6;animal:920484;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa338;condition:Sham;cage:20;month:4;animal:920971;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa339;condition:Switch-CHTP;cage:109;month:4;animal:920273;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa340;condition:CHTP;cage:54;month:3;animal:920732;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa341;condition:THS;cage:78;month:4;animal:920153;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa342;condition:THS;cage:81;month:6;animal:920174;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa343;condition:Switch-CHTP;cage:107;month:4;animal:920097;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa344;condition:Sham;cage:12;month:4;animal:920736;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa345;condition:Cess;cage:90;month:4;animal:920559;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa346;condition:CHTP;cage:53;month:3;animal:920200;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa347;condition:3R4F;cage:121;month:3;animal:920488;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa348;condition:Switch-CHTP;cage:114;month:6;animal:920545;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa349;condition:THS;cage:75;month:3;animal:920920;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa350;condition:3R4F;cage:33;month:3;animal:920897;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa351;condition:THS;cage:81;month:6;animal:920132;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa352;condition:3R4F;cage:39;month:6;animal:920486;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa354;condition:Sham;cage:11;month:4;animal:920018;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa355;condition:Cess;cage:98;month:6;animal:920422;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa357;condition:Switch-CHTP;cage:107;month:4;animal:920367;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa358;condition:Sham;cage:10;month:3;animal:920414;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa359;condition:Cess;cage:90;month:4;animal:920443;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa360;condition:THS;cage:82;month:6;animal:920401;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa361;condition:Switch-CHTP;cage:114;month:6;animal:920587;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa362;condition:Sham;cage:12;month:4;animal:920014;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa363;condition:CHTP;cage:64;month:4;animal:920669;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa364;condition:CHTP;cage:60;month:6;animal:920917;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa365;condition:Switch-CHTP;cage:106;month:4;animal:920409;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa366;condition:3R4F;cage:36;month:6;animal:920645;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa367;condition:3R4F;cage:32;month:3;animal:920914;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa368;condition:Sham;cage:14;month:6;animal:920211;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa370;condition:Switch-CHTP;cage:114;month:6;animal:920387;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa371;condition:Sham;cage:9;month:3;animal:920778;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa372;condition:CHTP;cage:59;month:6;animal:920907;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa373;condition:3R4F;cage:123;month:4;animal:920478;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa374;condition:Switch-CHTP;cage:109;month:4;animal:920076;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa375;condition:Cess;cage:93;month:4;animal:920927;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa376;condition:CHTP;cage:53;month:3;animal:920263;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa377;condition:Sham;cage:14;month:6;animal:920803;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa378;condition:CHTP;cage:60;month:6;animal:920158;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa379;condition:3R4F;cage:33;month:3;animal:920834;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa380;condition:THS;cage:75;month:3;animal:920437;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa381;condition:3R4F;cage:126;month:4;animal:920356;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa382;condition:3R4F;cage:39;month:6;animal:920690;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa383;condition:THS;cage:80;month:6;animal:920923;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa384;condition:Sham;cage:10;month:3;animal:920718;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa385;condition:Sham;cage:20;month:4;animal:920369;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa386;condition:CHTP;cage:54;month:3;animal:920854;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa387;condition:THS;cage:76;month:3;animal:920044;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa388;condition:THS;cage:77;month:4;animal:920597;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa389;condition:Cess;cage:98;month:6;animal:920349;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa390;condition:3R4F;cage:124;month:4;animal:920282;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa391;condition:Switch-CHTP;cage:105;month:4;animal:920164;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa392;condition:CHTP;cage:55;month:4;animal:920259;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa393;condition:Sham;cage:12;month:4;animal:920933;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa394;condition:CHTP;cage:58;month:6;animal:920827;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa395;condition:Sham;cage:10;month:3;animal:920182;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa396;condition:CHTP;cage:64;month:4;animal:920810;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa397;condition:Switch-CHTP;cage:109;month:4;animal:920420;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa398;condition:CHTP;cage:54;month:3;animal:920112;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa399;condition:THS;cage:76;month:3;animal:920580;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa400;condition:CHTP;cage:59;month:6;animal:920400;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa402;condition:Cess;cage:90;month:4;animal:920146;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa403;condition:Switch-CHTP;cage:115;month:6;animal:920671;


text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: house mouse

text: RNA-seq

text: Mus musculus

text: Mus musculus

text: cecum

text: sample:sa404;condition:Sham;cage:9;month:3;animal:920809;


text: public

tag: Namespace:Berlin Institute for Medical Systems Biology

text: ArrayExpress

characteristic: broker name

text: neuron

characteristic: cell type

text: house mouse

text: Protocols: Ascl1 WT cells and caf1mut overexpression cells were differentiated and seeded on filter; For each cell line, 4 filters were used; After differentiation on membrane for 3days, neurons were cultured in media containing 5uM ponasteroneA for 24 hours; Soma/neurite compartments were separated by the lab standard protocol (1 filter/replicate). RNA was extracted from Trifast lysate using Directzol column purification kit (zymo) including DNaseI treatment procedure; RNA samples were quantified and analysed for integrity by Bioanalyser; Good separation was verified by RT-qPCR. (2.5-3.7 cycles difference in Taglin between soma/neurite samples) Stranded mRNA Library kit; 1ul of 1:100 ESCC1 spike-in was added to 49ul initial solution with 400ng total RNA.; Final PCR was done with 10-15 cycles’ reaction.

text: normal

characteristic: disease

text: neurite

characteristic: fraction

characteristic: genotype

text: Mus musculus

text: Mus musculus

characteristic: replicate

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Berlin Institute for Medical Systems Biology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: neuron

text: house mouse

text: normal

text: neurite

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: ArrayExpress

text: neuron

text: house mouse

characteristic: common name

characteristic: description

text: normal

text: soma

text: Mus musculus

characteristic: organism

text: Mus musculus

text: Mus musculus


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: ArrayExpress

text: neuron

text: house mouse

text: normal

text: neurite

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


text: public

text: ArrayExpress

characteristic: broker name

text: neuron

characteristic: cell type

text: house mouse

text: normal

characteristic: disease

text: soma

characteristic: fraction

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: Mus musculus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Biosciences Institute Newcastle University

characteristic: age

text: ArrayExpress

text: gestational hematopoietic stem cell

text: human

text: embryo

characteristic: deelopmental stage

text: Protocols: Samples were collected by the Human Developmental Biology Resource and subsequently dissected by their team. Single cells suspensions were made by mechanical digestion and live, enriched cells were selected by FACS. RNA was extracted by cell lysis during droplet encapsulation on board the 10x Chromium Controller and purified after Reverse Transcription using DynaBeads. Libraries were constructed after cDNA amplification by fragmentation and ligation of adapter sequences before a final index PCR adding sample specific barcodes and sequencing adapters.

text: normal

text: CD45 negative

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

characteristic: protocol

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-LAST-UPDATE

text: Biosciences Institute Newcastle University

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: gestational hematopoietic stem cell

text: human

characteristic: common name

text: embryo

characteristic: description

text: normal

text: CD45 negative

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: gestational hematopoietic stem cell

characteristic: cell type

text: human

text: embryo

text: normal

characteristic: disease

text: CD45 positive

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: age

text: ArrayExpress

text: gestational hematopoietic stem cell

text: human

text: embryo

characteristic: deelopmental stage

text: normal

text: CD45 positive

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

characteristic: protocol

text: Homo sapiens

text: female

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: gestational hematopoietic stem cell

text: human

characteristic: common name

text: embryo

characteristic: description

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

text: gestational hematopoietic stem cell

characteristic: cell type

text: human

text: embryo

text: normal

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: male

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: age

text: ArrayExpress

text: gestational hematopoietic stem cell

text: human

text: embryo

characteristic: deelopmental stage

text: normal

text: CD45 negative

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

characteristic: protocol

text: Homo sapiens

text: male

characteristic: sex


characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: gestational hematopoietic stem cell

text: human

characteristic: common name

text: embryo

characteristic: description

text: Down syndrome

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone marrow

text: Homo sapiens

text: not available


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

characteristic: INSDC first public

text: public

tag: Namespace:Instituto de Investigacion Biosanitaria del Principado de Asturias (ISPA)

text: LN-229 (ATCC CRL-2611)

characteristic: cell line

text: glioblastoma multiforme

characteristic: cell type

text: human

text: KMT5B empty clone in LN229 cells - replicate A

text: Homo sapiens

text: Homo sapiens

text: KMT5B empty clone - replicate A

characteristic: title


characteristic: ENA-LAST-UPDATE

text: Instituto de Investigacion Biosanitaria del Principado de Asturias (ISPA)

text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B empty clone in LN229 cells - replicate B

text: Homo sapiens

text: Homo sapiens

text: KMT5B empty clone - replicate B


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B empty clone in LN229 cells - replicate C

text: Homo sapiens

text: Homo sapiens

text: KMT5B empty clone - replicate C


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B overexpression in LN229 cells - clone #3 - replicate A

text: Homo sapiens

text: Homo sapiens

text: KMT5B overexpression - clone #3 - replicate A


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B overexpression in LN229 cells - clone #3 - replicate B

text: Homo sapiens

text: Homo sapiens

text: KMT5B overexpression - clone #3 - replicate B


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B overexpression in LN229 cells - clone #3 - replicate C

text: Homo sapiens

text: Homo sapiens

text: KMT5B overexpression - clone #3 - replicate C


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B overexpression in LN229 cells - clone #7 - replicate A

text: Homo sapiens

text: Homo sapiens

text: KMT5B overexpression - clone #7 - replicate A


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B overexpression in LN229 cells - clone #7 - replicate B

text: Homo sapiens

text: Homo sapiens

text: KMT5B overexpression - clone #7 - replicate B


text: public

text: LN-229 (ATCC CRL-2611)

text: glioblastoma multiforme

text: human

text: KMT5B overexpression in LN229 cells - clone #7 - replicate C

text: Homo sapiens

text: Homo sapiens

text: KMT5B overexpression - clone #7 - replicate C


E-MTAB-9405:IECs Rnf20 KO 1

text: Mayo Clinic Gastroenterology Research

text: public

text: E-MTAB-9405:IECs Rnf20 KO 1

tag: Namespace:Mayo Clinic Gastroenterology Research

characteristic: age

text: ArrayExpress

characteristic: broker name

text: colon epithelial cell

text: house mouse

text: Protocols: Upon sacrificing Villin-CreERT2, Rnf20/40wt/wt, Rnf20fl/fl and Rnf40fl/fl mice, colons were isolated and flushed with ice-cold PBS. IECs were isolated from the proximal half of the colon. Colon segments used for IEC isolation were opened longitudinally and ice-cold PBS in a tube by vigorous shaking. Colons were cut into <1 mm² fragments and incubated with collagenase solution (2mg/ml Collagenase type I in washing medium (DMEM/F12 + HEPES supplemented with 10% fetal bovine serum, 100 units/ml penicillin, and 100 μg/ml streptomycin)) at 37°C for approximately 30-40 min. To separate crypts from the muscle layer, the suspension was pipetted vigorously up and down using a 1,000 μl pipette. When 50-80% of the crypts have separated from the muscle layer, suspensions were transferred to a tube containing 10 ml washing medium. Upon centrifugation at 250 xg for 5 min, supernatants containing muscle fragments were aspirated and the cell pellets were re-suspended in 10 ml washing medium. The suspensions were divided into different tubes and spun down at 250 xg for 5 min. The supernatant was removed and IEC pellets were snap-frozen in liquid nitrogen. RNA was extracted usiung QIAzol® Lysis Reagent (Qiagen) according to the manufacturer's protocol. Libraries were prepared using TruSeq RNA Library Preparation Kit v2 (Illumina®) after verifying the RNA integrity on an agarose gel. Library quality was assessed using an Agilent Bioanalyzer 2100.

text: adult

characteristic: developmental stage

text: Rnf20 knockout

characteristic: genotype

text: Rnf20 KO 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: IECs Rnf20 KO 1


E-MTAB-9405:IECs Rnf20 KO 2

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9405:IECs Rnf20 KO 2

characteristic: Submitter Id

text: ArrayExpress

text: colon epithelial cell

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: Rnf20 knockout

text: Rnf20 KO 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs Rnf20 KO 2


E-MTAB-9405:IECs Rnf20/40 WT 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC first public

text: public

text: E-MTAB-9405:IECs Rnf20/40 WT 1

text: ArrayExpress

text: colon epithelial cell

characteristic: cell type

text: house mouse

text: adult

text: wild type genotype

text: WT 1

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs Rnf20/40 WT 1

characteristic: title


E-MTAB-9405:IECs Rnf20/40 WT 2

text: Mayo Clinic Gastroenterology Research

text: public

text: E-MTAB-9405:IECs Rnf20/40 WT 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: colon epithelial cell

text: house mouse

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: WT 2

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: IECs Rnf20/40 WT 2


E-MTAB-9405:IECs Rnf40 KO 1

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9405:IECs Rnf40 KO 1

characteristic: Submitter Id

text: ArrayExpress

text: colon epithelial cell

text: house mouse

characteristic: common name

text: adult

text: Rnf40 knockout

text: Rnf40 KO 1

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: IECs Rnf40 KO 1


E-MTAB-9405:IECs Rnf40 KO 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC first public

text: public

text: E-MTAB-9405:IECs Rnf40 KO 2

text: ArrayExpress

text: colon epithelial cell

text: house mouse

characteristic: description

text: adult

text: Rnf40 knockout

text: Rnf40 KO 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs Rnf40 KO 2


E-MTAB-9409:IECs H3K4me3 Rnf20 KO 1

text: Mayo Clinic Gastroenterology Research

text: public

text: E-MTAB-9409:IECs H3K4me3 Rnf20 KO 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: colon epithelial cell

characteristic: cell type

text: house mouse

text: Protocols: Upon sacrificing Villin-CreERT2, Rnf20/40wt/wt, Rnf20fl/fl and Rnf40fl/fl mice, colons were isolated and flushed with ice-cold PBS. IECs were isolated from the proximal half of the colon. Colon segments used for IEC isolation were opened longitudinally and ice-cold PBS in a tube by vigorous shaking. Colons were cut into <1 mm² fragments and incubated with collagenase solution (2mg/ml Collagenase type I in washing medium (DMEM/F12 + HEPES supplemented with 10% fetal bovine serum, 100 units/ml penicillin, and 100 μg/ml streptomycin)) at 37°C for approximately 30-40 min. To separate crypts from the muscle layer, the suspension was pipetted vigorously up and down using a 1,000 μl pipette. When 50-80% of the crypts have separated from the muscle layer, suspensions were transferred to a tube containing 10 ml washing medium. Upon centrifugation at 250 xg for 5 min, supernatants containing muscle fragments were aspirated and the cell pellets were re-suspended in 10 ml washing medium. The suspensions were divided into different tubes and spun down at 250 xg for 5 min. The supernatant was removed and IEC pellets were snap-frozen in liquid nitrogen. DNA extraction was performed using Roti(R)-phenol/chloroform/Isoamylalcohol (Roth) followed by precipitation in 100% ethanol and washes with 70% ethanol. Libraries for DNA from ChIP were made using the KAPA Hyper Prep Kit (KAPABiosystems) according to the manufacturer’s instructions.

text: adult

characteristic: developmental stage

text: Rnf20 knockout

characteristic: genotype

text: Rnf20 KO 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs H3K4me3 Rnf20 KO 1

characteristic: title


E-MTAB-9409:IECs H3K4me3 Rnf20 KO 2

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9409:IECs H3K4me3 Rnf20 KO 2

characteristic: Submitter Id

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

text: Rnf20 knockout

text: Rnf20 KO 2

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: IECs H3K4me3 Rnf20 KO 2


E-MTAB-9409:IECs H3K4me3 Rnf20/40 WT 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC first public

text: public

text: E-MTAB-9409:IECs H3K4me3 Rnf20/40 WT 1

text: ArrayExpress

text: colon epithelial cell

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: WT 1

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: IECs H3K4me3 Rnf20/40 WT 1


E-MTAB-9409:IECs H3K4me3 Rnf20/40 WT 2

text: Mayo Clinic Gastroenterology Research

text: public

text: E-MTAB-9409:IECs H3K4me3 Rnf20/40 WT 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: colon epithelial cell

characteristic: cell type

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: WT 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs H3K4me3 Rnf20/40 WT 2


E-MTAB-9409:IECs H3K4me3 Rnf40 KO 1

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9409:IECs H3K4me3 Rnf40 KO 1

characteristic: Submitter Id

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

text: Rnf40 knockout

text: Rnf40 KO 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs H3K4me3 Rnf40 KO 1

characteristic: title


E-MTAB-9409:IECs H3K4me3 Rnf40 KO 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC first public

text: public

text: E-MTAB-9409:IECs H3K4me3 Rnf40 KO 2

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

text: Rnf40 knockout

text: Rnf40 KO 2

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: IECs H3K4me3 Rnf40 KO 2


E-MTAB-9409:IECs Input Rnf20 KO 1

text: Mayo Clinic Gastroenterology Research

text: public

text: E-MTAB-9409:IECs Input Rnf20 KO 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: colon epithelial cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Rnf20 knockout

text: Rnf20 KO 1

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: IECs Input Rnf20 KO 1


E-MTAB-9409:IECs Input Rnf20 KO 2

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9409:IECs Input Rnf20 KO 2

characteristic: Submitter Id

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

text: Rnf20 knockout

characteristic: genotype

text: Rnf20 KO 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs Input Rnf20 KO 2


E-MTAB-9409:IECs Input Rnf20/40 WT 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC first public

text: public

text: E-MTAB-9409:IECs Input Rnf20/40 WT 1

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

text: wild type genotype

text: WT 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs Input Rnf20/40 WT 1

characteristic: title


E-MTAB-9409:IECs Input Rnf20/40 WT 2

text: Mayo Clinic Gastroenterology Research

text: public

text: E-MTAB-9409:IECs Input Rnf20/40 WT 2

characteristic: age

text: ArrayExpress

characteristic: broker name

text: colon epithelial cell

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

text: wild type genotype

text: WT 2

text: Mus musculus

text: Mus musculus

text: colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

text: IECs Input Rnf20/40 WT 2


E-MTAB-9409:IECs Input Rnf40 KO 1

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9409:IECs Input Rnf40 KO 1

characteristic: Submitter Id

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

characteristic: developmental stage

text: Rnf40 knockout

text: Rnf40 KO 1

text: Mus musculus

text: Mus musculus

text: colon

text: Mus musculus

text: male

characteristic: strain

text: IECs Input Rnf40 KO 1


E-MTAB-9409:IECs Input Rnf40 KO 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Mayo Clinic Gastroenterology Research

characteristic: INSDC first public

text: public

text: E-MTAB-9409:IECs Input Rnf40 KO 2

text: ArrayExpress

text: colon epithelial cell

text: house mouse

text: adult

text: Rnf40 knockout

characteristic: genotype

text: Rnf40 KO 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: colon

text: Mus musculus

text: male

text: IECs Input Rnf40 KO 2


text: public

tag: Namespace:The Francis Crick Institute and  Department of Neuromuscular Diseases

characteristic: TDP-43 variant

text: ArrayExpress

characteristic: broker name

text: HEK-293 Flp-In

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cells collected by scraping of from TC plates DMEM siRNA and siRNA with Doxycycline induced rescue RNA was extracted from cell pellets using Maxwell RSC simply RNA cells kit in Maxwell RSC instrument following manufacturer’s instructions. QuantSeq 3' mRNA-Seq Library Prep Kit FWD for Illumina

characteristic: description

text: siRNA knockdown of endogenous TDP-43

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: replicate

text: False

characteristic: rescue of TDP-43 knockdown with inducible variant

text: Homo sapiens

characteristic: title


text: The Francis Crick Institute and Department of Neuromuscular Diseases

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: HEK-293 Flp-In

text: epithelial cell

text: human

text: siRNA knockdown of endogenous TDP-43

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: False

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: ArrayExpress

text: HEK-293 Flp-In

text: epithelial cell

text: human

text: siRNA knockdown of endogenous TDP-43 and rescue

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: kidney

text: True

text: Homo sapiens


text: public

text: Wild-type

characteristic: TDP-43 variant

text: ArrayExpress

characteristic: broker name

text: HEK-293 Flp-In

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: siRNA knockdown of endogenous TDP-43

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: False

text: Homo sapiens


characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: Wild-type

text: ArrayExpress

text: HEK-293 Flp-In

text: epithelial cell

text: human

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: replicate

text: True

characteristic: rescue of TDP-43 knockdown with inducible variant

text: Homo sapiens

characteristic: title


text: mus musculus

characteristic: ArrayExpress-SPECIES

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: Mus musculus

text: Mus musculus

characteristic: subject id


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University Children's Hospital Zurich

characteristic: INSDC first public

text: public

tag: Namespace:University Children's Hospital Zurich

text: human

text: Homo sapiens

text: Homo sapiens


Vibrio chagasii 18LP

text: iBB-IST

text: public

text: Vibrio chagasii 18LP

characteristic: collection date

text: Genome sequence of Vibrio chagasii strain 18LP isolated from Sparus aurata larvae

text: anthropogenic environment

characteristic: environment (biome)

text: aquaculture process

characteristic: environment (feature)

text: seawater

characteristic: environment (material)

text: 86.19x coverage

characteristic: finishing strategy

text: Portugal

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Olhão

characteristic: geographic location (region and locality)

text: gilthead seabream (fish)

characteristic: host common name

text: larva

characteristic: host life stage

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

characteristic: investigation type

text: Vibrio chagasii

characteristic: organism

text: Draft genome sequence of Aliivibrio fischeri strain 5LC, Vibrio chagasii strain 18LP and V. jasicida strain 20LP isolated from Sparus aurata (gilthead seabream) larvae

characteristic: project name

text: Vibrio chagasii

text: Illumina HiSeq 2500

characteristic: sequencing method


Vibrio jasicida 20LP

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: iBB-IST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Vibrio jasicida 20LP

characteristic: Submitter Id

characteristic: collection date

text: Genome sequence of Vibrio jasicida strain 20LP isolated from Sparus aurata larvae

characteristic: description

text: anthropogenic environment

text: aquaculture process

text: seawater

text: 80.10x coverage

text: Portugal

text: Olhão

text: gilthead seabream (fish)

text: larva

text: host-associated

text: Vibrio jasicida

text: Vibrio jasicida

text: Illumina HiSeq 2500

characteristic: title


text: University of Cote d'Azur

text: public

tag: Namespace:University of Cote d'Azur

text: mouse primary hepatocytes

characteristic: cell type

text: house mouse

characteristic: common name

text: hepatocytes harboring floxed Klf10 stimulated with 5mM fructose and 25mM glucose for 12 hours

text: adult

characteristic: dev stage

characteristic: lab host

characteristic: mating type

text: Mus musculus

text: Mus musculus

text: M

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Cote d'Azur

text: public

text: mouse primary hepatocytes

text: house mouse

text: hepatocytes harboring floxed Klf10 stimulated with 5mM glucose for 12 hours

text: adult

text: Mus musculus

characteristic: organism

text: Mus musculus

text: M


characteristic: External Id

text: University of Cote d'Azur

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: mouse primary hepatocytes

text: house mouse

text: KLF10 deficient hepatocytes stimulated with 5mM fructose and 25mM glucose for 12 hours

text: adult

text: Mus musculus

text: Mus musculus

text: M


text: University of Cote d'Azur

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: mouse primary hepatocytes

text: house mouse

text: KLF10 deficient hepatocytes stimulated with 5mM glucose for 12 hours

text: adult

text: Mus musculus

text: Mus musculus

text: M


text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT0

characteristic: description

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

text: liver

characteristic: tissue type

characteristic: title


text: University of Cote d'Azur

text: public

text: house mouse

characteristic: common name

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT3

text: adult, 5 weeks

characteristic: dev stage

characteristic: lab host

text: Mus musculus

text: Mus musculus

text: M

text: liver


characteristic: ENA-CHECKLIST

text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =2) haboring floxed Klf10 in hepatocytes,ZT6

text: adult, 5 weeks

characteristic: mating type

text: Mus musculus

text: Mus musculus

text: M

characteristic: sex

text: liver


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT9

text: adult, 5 weeks

text: Mus musculus

characteristic: organism

text: Mus musculus

text: M

text: liver


characteristic: External Id

text: University of Cote d'Azur

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT12

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

text: liver


text: University of Cote d'Azur

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: house mouse

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT15

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

text: liver


text: University of Cote d'Azur

text: public

characteristic: Submitter Id

text: house mouse

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT18

characteristic: description

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

text: liver

characteristic: tissue type


text: University of Cote d'Azur

text: public

text: house mouse

characteristic: common name

text: pools of RNA purified from mouse livers (n =3) haboring floxed Klf10 in hepatocytes,ZT21

text: adult, 5 weeks

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: M

text: liver

characteristic: title


characteristic: ENA-CHECKLIST

text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT0

text: adult, 5 weeks

characteristic: lab host

characteristic: mating type

text: Mus musculus

text: Mus musculus

text: M

text: liver


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT3

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

characteristic: sex

text: liver


characteristic: External Id

text: University of Cote d'Azur

characteristic: INSDC center name

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT6

text: adult, 5 weeks

text: Mus musculus

characteristic: organism

text: Mus musculus

text: M

text: liver


text: University of Cote d'Azur

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT9

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

text: liver


text: University of Cote d'Azur

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT12

characteristic: description

text: adult, 5 weeks

text: Mus musculus

text: Mus musculus

text: M

text: liver


text: University of Cote d'Azur

text: public

text: house mouse

characteristic: common name

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT15

text: adult, 5 weeks

characteristic: dev stage

text: Mus musculus

text: Mus musculus

text: M

text: liver

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT18

text: adult, 5 weeks

characteristic: lab host

text: Mus musculus

text: Mus musculus

text: M

text: liver

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Cote d'Azur

text: public

text: house mouse

text: pools of RNA purified from mouse livers (n =3) with hepatocyte-specific deletion of Klf10,ZT21

text: adult, 5 weeks

characteristic: mating type

text: Mus musculus

text: Mus musculus

text: M

text: liver


characteristic: External Id

text: IDIBAPS

characteristic: INSDC center name

text: public

text: human

text: DNA/RNA extracted from PBL tumor cases from FFPE tissue.

text: Homo sapiens

text: Homo sapiens

text: Plasmablastic lymphoma


text: UNIVERSITY OF EXETER

characteristic: INSDC first public

text: public

tag: Namespace:UNIVERSITY OF EXETER

text: Pseudomonas aeruginosa PA14 CRISPR 1 array following exposure to phage DMS3vir

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa


text: UNIVERSITY OF EXETER

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: CRISPR 2 array of Pseudomonas aeruginosa PA14 following exposure to phage DMS3vir.

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa