text: WAGENINGEN UR

text: public

characteristic: collection date

text: tomato

text: 820 MB

characteristic: estimated size

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

characteristic: number of replicons

text: Solanum lycopersicum

characteristic: organism

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

text: Solanum lycopersicum

text: ABC Potato Leaf

text: Tomato WGS sequencing


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:WAGENINGEN UR

characteristic: Submitter Id

text: tomato

characteristic: common name

text: 820 MB

text: Netherlands

unit: DD

text: Solanum lycopersicum

text: tomato

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: ploidy

text: Solanum lycopersicum

text: Sonora

characteristic: subspecific genetic lineage name

text: Tomato WGS sequencing

characteristic: title


text: WAGENINGEN UR

text: public

characteristic: collection date

text: tomato

text: 820 MB

characteristic: estimated size

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: isolation and growth condition

characteristic: number of replicons

text: Solanum lycopersicum

characteristic: organism

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

text: Solanum lycopersicum

text: Tomato WGS sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UR

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: tomato

characteristic: common name

text: 820 MB

text: Netherlands

text: Solanum lycopersicum

text: tomato

text: soil

text: Solanum lycopersicum

text: Nagcarlan

text: Tomato WGS sequencing


text: WAGENINGEN UR

text: public

characteristic: collection date

text: tomato

text: 820 MB

characteristic: estimated size

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Solanum lycopersicum

text: tomato

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: ploidy

text: Solanum lycopersicum

text: Morne a L�Eau

characteristic: subspecific genetic lineage name

text: Tomato WGS sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tomato

text: 820 MB

text: Netherlands

characteristic: isolation and growth condition

characteristic: number of replicons

text: Solanum lycopersicum

characteristic: organism

text: tomato

characteristic: organism common name

characteristic: plant developmental stage

text: soil

text: Solanum lycopersicum

text: Kecskemeti Koria Bibor

text: Tomato WGS sequencing


text: WAGENINGEN UR

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: tomato

characteristic: common name

text: 820 MB

characteristic: estimated size

characteristic: genotype

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Solanum lycopersicum

text: tomato

text: soil

text: Solanum lycopersicum

text: Grosse Cotelee

text: Tomato WGS sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: WAGENINGEN UR

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: tomato

text: 820 MB

text: Netherlands

text: Solanum lycopersicum

text: tomato

text: soil

characteristic: plant growth medium

characteristic: plant structure

characteristic: ploidy

text: Solanum lycopersicum

text: var. cerasiforme

characteristic: subspecific genetic lineage name

text: Tomato WGS sequencing

characteristic: title


text: Plasmodium falciparum

characteristic: ArrayExpress-SPECIES

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: malaria parasite P. falciparum

characteristic: common name

text: Plasmodium falciparum

characteristic: organism

text: Plasmodium falciparum

characteristic: subject id


Solarolo

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: Solarolo

tag: Namespace:Microbial Ecology of Health UNIT, University of Bologna

characteristic: collection date

text: animal-associated environment

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Italy

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: gut metagenome

text: Bronze Age coprolites unveil the buffering role of the gut microbiota in the dietary adaptation of dogs to domestication

characteristic: project name

text: gut metagenome

text: WGS

characteristic: sequencing method


characteristic: External Id

text: INIA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

characteristic: common name

text: Bos taurus

text: Bos taurus

text: MinION run 3

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: INIA

text: public

text: cattle

text: Bos taurus

characteristic: organism

text: Bos taurus

text: MinION run 4


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 5


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 6


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 7


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 8


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 9


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 10


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 11


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 12


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 13


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 14


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 15


text: INIA

text: public

text: cattle

text: Bos taurus

text: Bos taurus

text: MinION run 16


text: public

tag: Namespace:Graduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Dongjin

characteristic: cultivar

text: Protocols: The samples were collected from paddy field at anthesis stage. We froze the anthers immediately using liquid nitrogen. Plants were transplanted to paddy field after two weeks in incubator at BOD incubator at end of May. The plants were then grown for 3 months in the field. We extract RNA from the sample using RNeasy Plant Mini Kit from QIAGEN following manufacturer's instruction. TruSeq Stranded mRNA Sample Preparation Guide, Part #15031047 Rev. E with TruSeq Stranded mRNA LT Sample Prep Kit

characteristic: description

text: anthesis

characteristic: developmental stage

text: osmtd2 knockout

characteristic: genotype

text: field study

characteristic: growth condition

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: anther

characteristic: organism part

text: Oryza sativa Japonica Group


characteristic: External Id

text: Graduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: Japanese rice

text: Dongjin

text: anthesis

text: osmtd2 knockout

text: field study

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: anther

text: Oryza sativa Japonica Group


characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Dongjin

text: anthesis

text: wild type genotype

text: field study

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: anther

text: Oryza sativa Japonica Group

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: GSC

text: public

text: yellow mealworm

text: Tenebrio molitor

characteristic: organism

text: Tenebrio molitor


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

tag: Namespace:CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: collection date

text: foxtail millet

text: wildtype at 1 leaf stage leaf tissue replication 1

characteristic: description

characteristic: estimated size

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: wildtype at 1 leaf stage leaf tissue replication 2

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: wildtype at 1 leaf stage leaf tissue replication 3

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: wildtype at 1 leaf stage root tissue replication 1

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: wildtype at 1 leaf stage root tissue replication 2

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: wildtype at 1 leaf stage root tissue replication 3

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: wildtype at 3 leaf stage leaf tissue replication 3

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: wildtype at 3 leaf stage leaf tissue replication 2

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: wildtype at 3 leaf stage root tissue replication 3

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: wildtype at 3 leaf stage root tissue replication 2

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: aux1 at 1 leaf stage leaf tissue replication 1

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: aux1 at 1 leaf stage leaf tissue replication 2

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: aux1 at 1 leaf stage leaf tissue replication 3

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: aux1 at 1 leaf stage root tissue replication 1

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: aux1 at 1 leaf stage root tissue replication 2

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: aux1 at 1 leaf stage root tissue replication 3

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: aux1 at 3 leaf stage leaf tissue replication 3

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: aux1 at 3 leaf stage leaf tissue replication 2

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: aux1 at 3 leaf stage root tissue replication 3

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: aux1 at 3 leaf stage root tissue replication 2

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: wildtype at heading stage young panicle tissue replication 1

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: wildtype at heading stage young panicle tissue replication 2

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: wildtype at heading stage young panicle tissue replication 3

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

characteristic: collection date

text: foxtail millet

characteristic: common name

text: aux1 at heading stage young panicle tissue replication 1

characteristic: description

characteristic: estimated size

text: China

text: seedling soil

text: Setaria italica

characteristic: organism

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1

characteristic: title


text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

text: public

text: foxtail millet

text: aux1 at heading stage young panicle tissue replication 2

text: China

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: seedling soil

characteristic: isolation and growth condition

characteristic: number of replicons

text: Setaria italica

text: seedling and heading plant

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: seedling and heading plant

characteristic: plant structure

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: CHINESE ACADEMY OF AGRICULTURAL SCIENCE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: foxtail millet

text: aux1 at heading stage young panicle tissue replication 3

text: China

text: seedling soil

text: Setaria italica

text: seedling and heading plant

text: soil

text: seedling and heading plant

text: Setaria italica

text: RNAseq of Setaria aux1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: AARHUS UNIVERSITY, DENMARK

text: public

tag: Namespace:AARHUS UNIVERSITY, DENMARK

text: Sample from the middle of a woodchip bioreactor located in Skannerup Denmark

characteristic: description

text: Yes

characteristic: environmental sample

text: wetland metagenome

characteristic: organism

text: wetland metagenome

characteristic: title


text: IPK-Gatersleben

text: public

text: bread wheat

characteristic: common name

text: Fielder

characteristic: cultivar

text: Leaf tissue for WGS library preparation - Omni-C

text: seedling

characteristic: dev stage

text: greenhouse

characteristic: growth condition

text: Triticum aestivum

text: Triticum aestivum

text: Kazusa DNA Research Institute

text: leaf

characteristic: tissue

text: Wheat (Triticum aestivum) cultivar ‘Fielder’


characteristic: ENA-CHECKLIST

characteristic: External Id

text: IPK-Gatersleben

characteristic: INSDC center name

text: public

text: bread wheat

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text: Protocols: RNP complexes were formed incubating sgRNA and Cas9 (IDT) for 20-30 at RT before nucleofection using the Neon (Thermofischer) with buffer R using program 3. The MUTZ3 cell lines were cultured in αMEM (HyClone) with 20% fetal calf serum (FCS) and 20% conditioned 5637 medium. The 293T were cultured in DMEM (Gibco) with 10% FCS. All cell lines were supplemented with 50 U/mL penicillin and 50 μg/mL streptomycin. Viable frozen AML cells were thawed and resuspended in IMDM medium supplemented with: 20% BIT medium (Stem cell technologies), 1x β-mercaptoethanol (1000x Life technologies), 6 µg/ml LDL (Sigma Aldrich), human IL6, IL3, G-CSF, GM-CSF at 20 ng/ml and FLT3, SCF at 50 ng/ml (Peprotech. Genomic DNA was extracted 48 or 72 h after transfection using Quick Extract buffer (Epicenter) For amplicon sequencing we used the Illumina PCR-based custom amplicon sequencing method using the TruSeq Custom Amplicon index kit (Illumina). The first PCR was performed using Q5 polymerase (NEB), the second nested PCR with KAPA HiFi HotStart Ready mix (KapaBiosystems).

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow cell

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Hematology, Erasmus University Medical Center

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-99451620120565:K562_pX330_d5_sgRNA8

text: ArrayExpress

text: myeloblast

text: human

text: adult

text: acute myeloid leukemia

text: Homo sapiens

text: Homo sapiens

text: bone marrow cell

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

characteristic: Submitter Id

text: SIB

text: Viollier AG

characteristic: collecting institution

characteristic: collection date

text: Christian Beisel et al

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Guys and St Thomas' Hospital

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Guys and St Thomas' Hospital

text: United Kingdom

text: diseased

text: Homo sapiens

text: Variovorax sp. GSTT-20

text: Aortic andograft

characteristic: isolation source

text: Variovorax sp. 1.13

text: Variovorax sp. 1.13

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: jhuang

text: public

characteristic: Submitter Id

text: I. Department of Internal Medicine, University Medical Center Hamburg-Eppendorf,

characteristic: collecting institution

characteristic: collection date

text: Katja Giersch

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Hamburg

characteristic: geographic location (region and locality)

unit: week

characteristic: host age

text: house mouse

text: diseased

text: Mus musculus

text: not collected

text: Hepatitis delta virus

characteristic: receipt date

text: Hepatitis delta virus

text: Human liver chimeric USG mice first infected with HBV and after 9 weeks super-infected simultaneously with HDV-1cc and HDV-3cc or HDV-1p.


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: jhuang

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Katja Giersch

text: Germany

text: Hamburg

text: house mouse

characteristic: host common name

text: diseased

characteristic: host health state

text: Mus musculus

characteristic: host scientific name

text: not collected

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Hepatitis delta virus

characteristic: organism

text: Hepatitis delta virus

text: Human liver chimeric USG mice first infected with HBV and after 9 weeks super-infected simultaneously with HDV-1cc and HDV-3cc or HDV-1p


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Dhox7 null mutant grown in liquid culture for 48h.

characteristic: description

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Dhox7 RNAseq Mycelium

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: JIC

characteristic: INSDC center name

text: public

text: Dmst12 null mutant grown in liquid culture CM for 48h

text: Pyricularia oryzae

text: Pyricularia oryzae

text: Dmst12 RNAseq Mycelium


text: APC Microbiome Institute

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:APC Microbiome Institute

characteristic: collection date

text: feces

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: DINAMIC

characteristic: project name

text: human gut metagenome

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: Effect of fecal microbiota transplantation combined with Mediterranean diet on insulin sensitivity in subjects with metabolic syndrome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UBCH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: HeLa

characteristic: cell line

text: human

characteristic: common name

text: Protocols: 80% confluent HeLa cells GenElute mammalian total RNA miniprep kit (Sigma-Aldrich) Oxford Nanopore Technology SQK-DCS108

characteristic: description

text: adult

characteristic: developmental stage

text: cervical carcinoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cervix epithelium

characteristic: organism part

text: scrambled siRNA

characteristic: rna interference

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UBCH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: HeLa

text: human

text: adult

text: cervical carcinoma

text: Homo sapiens

text: Homo sapiens

text: cervix epithelium

text: SMG6 knockdown by siRNA

text: Homo sapiens

text: female


characteristic: External Id

text: UBCH

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: HeLa

text: human

text: adult

text: cervical carcinoma

text: Homo sapiens

text: Homo sapiens

text: cervix epithelium

text: SMG6 and SMG7 double knockdown by siRNA

text: Homo sapiens

text: female


text: UBCH

text: public

text: ArrayExpress

text: HeLa

characteristic: cell line

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: cervical carcinoma

characteristic: disease

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cervix epithelium

text: SMG7 knockdown by siRNA

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UBCH

text: public

text: ArrayExpress

text: HeLa

text: human

text: adult

text: cervical carcinoma

text: Homo sapiens

text: Homo sapiens

text: cervix epithelium

characteristic: organism part

text: UPF1 knockdown by siRNA

characteristic: rna interference

text: Homo sapiens

text: female

characteristic: sex

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Southern Medical University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Southern Medical University

text: lung metagenome

text: lung metagenome

text: BALF


text: Southern Medical University

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: lung metagenome

text: lung metagenome

text: NS


text: Southern Medical University

text: public

text: nasal swabs and BALF

characteristic: description

text: lung metagenome

text: lung metagenome

text: NS.BALF


text: UNIVERSITY OF GRANADA

text: public

tag: Namespace:UNIVERSITY OF GRANADA

characteristic: collection date

text: California poppy

characteristic: common name

text: soil

characteristic: environment (biome)

text: greenhouse

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: Eschscholzia californica

text: plant-associated

characteristic: plant-associated environmental package

text: aperture pollen Eschscholzia californica

characteristic: project name

text: Eschscholzia californica

text: RNA-seq

characteristic: sequencing method

text: Eschscholzia wild 1


tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRANADA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: California poppy

text: soil

text: greenhouse

text: soil

text: Spain

text: eukaryote

text: Eschscholzia californica

characteristic: organism

text: plant-associated

text: Eschscholzia californica

text: RNA-seq

text: Eschscholzia wild 2

characteristic: title


text: UNIVERSITY OF GRANADA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: California poppy

characteristic: common name

text: soil

characteristic: environment (biome)

text: greenhouse

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Spain

text: eukaryote

text: Eschscholzia californica

text: plant-associated

text: Eschscholzia californica

text: RNA-seq

text: Eschscholzia wild 3


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF GRANADA

text: public

text: California poppy

text: soil

text: greenhouse

text: soil

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: eukaryote

characteristic: investigation type

text: Eschscholzia californica

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: Eschscholzia californica

text: RNA-seq

characteristic: sequencing method

text: Eschscholzia VIGS 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRANADA

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: California poppy

text: soil

text: greenhouse

text: soil

text: Spain

text: eukaryote

text: Eschscholzia californica

characteristic: organism

text: plant-associated

text: Eschscholzia californica

text: RNA-seq

text: Eschscholzia VIGS 2

characteristic: title


text: UNIVERSITY OF GRANADA

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: California poppy

characteristic: common name

text: soil

characteristic: environment (biome)

text: greenhouse

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Spain

text: eukaryote

text: Eschscholzia californica

text: plant-associated

text: Eschscholzia californica

text: RNA-seq

text: Eschscholzia VIGS 3


Assembly v1

characteristic: ENA-CHECKLIST

text: Genoscope CEA

text: public

text: Assembly v1

tag: Namespace:Genoscope CEA

text: yellow mealworm

text: Tenebrio molitor

text: Tenebrio molitor

text: Chromosome-scale assembly of the yellow mealworm genome


E-MTAB-10423:Th1 Progesterone 0.5h K

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10423:Th1 Progesterone 0.5h K

tag: Namespace:Department of Bioinformatics, IFM, Linkoping University

text: ArrayExpress

characteristic: broker name

text: naive T cell

characteristic: cell type

text: human

text: Protocols: Naïve T-cells were isolated from peripheral blood mononuclear cells (PBMCs) by magnetic bead separation using a Naive CD4+ T Cell Isolation Kit II (Miltenyi Biotec). The PBMCs were isolated from the buffy coat fraction of human blood using phase separation over lymphoprep (Axis Shields). Stimulation towards Th1 differentiation for 0.5, 1, 2, 6 and 24h. Specifically the cells were treated with a 1/1 ratio of Dynabeads® Human T-Activator CD3/CD28 (Thermofisher), recombinant IL-2 (10 ng/ml), recombinant IL-12 (5 ng/ml), anti-IFNG (MAB285) (5 µg/ml) (Rnd Systems) and 50 µM Progesterone (P4) in RPMI 1640 media (Gibco). Prior to start of stimulation cells were preincubated for 12-14h with 50 µM P4. RNA was extracted using the ZR-Duet DNA/RNA Kit (Zymo Research, #D7001) and nucleic acid concentration was determined by nanodrop. RNA used for RNA sequencing underwent treatment with 5 U DNase I (Zymo Research, #E1010) in column during RNA extraction. Only RNA samples with a RNA integrity number > 7 were chosen for RNA sequencing as shown by 2100 Bioanalyzer (Agilent). Samples were processed using the TruSeq RNA Sample Prep kit (Illumina) according to the manufacturers instructions.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: K

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 0.5h K


E-MTAB-10423:Th1 Progesterone 0.5h L

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Bioinformatics, IFM, Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10423:Th1 Progesterone 0.5h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 0.5h L

characteristic: title


E-MTAB-10423:Th1 Progesterone 0.5h M

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10423:Th1 Progesterone 0.5h M

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

characteristic: common name

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 0.5h M


E-MTAB-10423:Th1 Progesterone 0h K

text: public

text: E-MTAB-10423:Th1 Progesterone 0h K

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: K

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 0h K


E-MTAB-10423:Th1 Progesterone 0h L

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10423:Th1 Progesterone 0h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 0h L


E-MTAB-10423:Th1 Progesterone 0h M

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10423:Th1 Progesterone 0h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 0h M


E-MTAB-10423:Th1 Progesterone 1h K

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10423:Th1 Progesterone 1h K

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 1h K

characteristic: title


E-MTAB-10423:Th1 Progesterone 1h L

text: public

text: E-MTAB-10423:Th1 Progesterone 1h L

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 1h L


E-MTAB-10423:Th1 Progesterone 1h M

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10423:Th1 Progesterone 1h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Th1 Progesterone 1h M


E-MTAB-10423:Th1 Progesterone 24h K

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10423:Th1 Progesterone 24h K

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 24h K


E-MTAB-10423:Th1 Progesterone 24h L

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10423:Th1 Progesterone 24h L

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 24h L


E-MTAB-10423:Th1 Progesterone 24h M

text: public

text: E-MTAB-10423:Th1 Progesterone 24h M

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 24h M

characteristic: title


E-MTAB-10423:Th1 Progesterone 2h K

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10423:Th1 Progesterone 2h K

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

characteristic: disease

text: K

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 2h K


E-MTAB-10423:Th1 Progesterone 2h L

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10423:Th1 Progesterone 2h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Th1 Progesterone 2h L


E-MTAB-10423:Th1 Progesterone 2h M

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10423:Th1 Progesterone 2h M

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 2h M


E-MTAB-10423:Th1 Progesterone 6h K

text: public

text: E-MTAB-10423:Th1 Progesterone 6h K

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

text: K

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 6h K


E-MTAB-10423:Th1 Progesterone 6h L

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10423:Th1 Progesterone 6h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

characteristic: disease

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 6h L

characteristic: title


E-MTAB-10423:Th1 Progesterone 6h M

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10423:Th1 Progesterone 6h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 6h M


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:IFEVA (CONICET-UBA), Facultad de Agronomia (FAUBA), Universidad de Buenos Aires (UBA)

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: thale cress

text: RIL Col x Pat

characteristic: cultivar

text: Protocols: One plant from each RIL or parental line was selected for DNA extraction Plant growth was under standart Arabidopsis culture conditions. Seeds were stratified in 0.1% agarose at 4°C 4 days. After germination, seedlings were transplanted to pots in a growth chamber at 23°C and long day (16/8 hs day/night). Total DNA was extracted according to Cao et al. (2011) \Whole-genome sequencing of multiple Arabidopsis thaliana populations\, https://doi.org/10.1038/ng.911 Libraries were prepared in the Gregor Mendel Institute of Molecular Plant Biology, using the Tn5 transposase protocol outlined in Pisupati et al. (2017) \Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples\, https://www.nature.com/articles/sdata2017184

text: sporophyte vegetative stage

text: wild type genotype

characteristic: genotype

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: IFEVA (CONICET-UBA), Facultad de Agronomia (FAUBA), Universidad de Buenos Aires (UBA)

text: public

text: ArrayExpress

text: thale cress

characteristic: common name

text: RIL Col x Pat

characteristic: description

text: sporophyte vegetative stage

characteristic: developmental stage

text: wild type genotype

text: long day length regimen

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: thale cress

text: RIL Col x Pat

text: sporophyte vegetative stage

text: long day length regimen

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: sporophyte vegetative stage

text: long day length regimen

characteristic: individual

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

text: Arabidopsis thaliana


text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

text: Pat

characteristic: cultivar

text: sporophyte vegetative stage

text: long day length regimen

characteristic: growth condition

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: whole organism

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRA Tours

text: public

tag: Namespace:INRA Tours

characteristic: collection date

text: France

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Bos taurus

characteristic: host scientific name

characteristic: isolate

text: Bovine fecal sample

characteristic: isolation source

text: Mycobacterium avium subsp. paratuberculosis

characteristic: strain


E-MTAB-10444:Th1 0.5h K

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 0.5h K

tag: Namespace:Linkoping University

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Naïve T-cells were isolated from peripheral blood mononuclear cells (PBMCs) by magnetic bead separation using a Naive CD4+ T Cell Isolation Kit II (Miltenyi Biotec). The PBMCs were isolated from the buffy coat fraction of human blood using phase separation over lymphoprep (Axis Shields). Stimulation towards Th1 differentiation for 0.5, 1, 2, 6 and 24h. Specifically the cells were treated with a 1/1 ratio of Dynabeads® Human T-Activator CD3/CD28 (Thermofisher), recombinant IL-2 (10 ng/ml), recombinant IL-12 (5 ng/ml) and anti-IFNG (MAB285) (5 µg/ml) (Rnd Systems) in RPMI 1640 media (Gibco). For the Progesterone treated samples: Sampels were pre-incubated with 50 µM Progesterone (P4) for 12-14h prior to experiment and then reconstituted with fresh media containing above 50 µM P4 and above mentioned TH1 stimulation reagetnts to start the reaction. Non-progeterone treated sample were pre-incubated and reconstituted in growth media without P4. DNA was extracted from 50000 cells per sample in accordance with the OMNI-ATAC-seq method. Corces et al. Nature Methods 2017 Libarary construction was carried out in accordance with the OMNI-ATAC-seq method. Corces et al. Nature Methods 2017. Illumina NEXTERA primers and sequencing adapters were used to construct the index.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: K

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Anti-CD3/CD28, IL2 and IL12

characteristic: stimulus

text: Th1 0.5h K

characteristic: title


E-MTAB-10444:Th1 0.5h L

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Linkoping University

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 0.5h L

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: L

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 0.5h L


E-MTAB-10444:Th1 0.5h M

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 0.5h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 0.5h M


E-MTAB-10444:Th1 0h K

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 0h K

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: K

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 0h K


E-MTAB-10444:Th1 0h L

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Linkoping University

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 0h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 0h L

characteristic: title


E-MTAB-10444:Th1 0h M

characteristic: ENA-CHECKLIST

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 0h M

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: M

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Th1 0h M


E-MTAB-10444:Th1 1h K

characteristic: ENA-FIRST-PUBLIC

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 1h K

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

characteristic: stimulus

text: Th1 1h K


E-MTAB-10444:Th1 1h L

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 1h L

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: L

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 1h L


E-MTAB-10444:Th1 1h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Linkoping University

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 1h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 1h M

characteristic: title


E-MTAB-10444:Th1 24h K

characteristic: ENA-FIRST-PUBLIC

text: Linkoping University

characteristic: INSDC center name

text: public

text: E-MTAB-10444:Th1 24h K

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: K

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 24h K


E-MTAB-10444:Th1 24h L

text: Linkoping University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 24h L

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

characteristic: stimulus

text: Th1 24h L


E-MTAB-10444:Th1 24h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 24h M

text: ArrayExpress

text: naive T cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: M

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 24h M


E-MTAB-10444:Th1 2h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

characteristic: INSDC center name

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 2h K

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 2h K

characteristic: title


E-MTAB-10444:Th1 2h L

text: Linkoping University

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10444:Th1 2h L

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: L

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 2h L


E-MTAB-10444:Th1 2h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 2h M

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

characteristic: stimulus

text: Th1 2h M


E-MTAB-10444:Th1 6h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 6h K

text: ArrayExpress

text: naive T cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: K

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 6h K


E-MTAB-10444:Th1 6h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 6h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 6h L

characteristic: title


E-MTAB-10444:Th1 6h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 6h M

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: M

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2 and IL12

text: Th1 6h M


E-MTAB-10444:Th1 Progesterone 0.5h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 Progesterone 0.5h K

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Anti-CD3/CD28, IL2, IL12 and Progesterone

characteristic: stimulus

text: Th1 Progesterone 0.5h K


E-MTAB-10444:Th1 Progesterone 0.5h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10444:Th1 Progesterone 0.5h L

text: ArrayExpress

text: naive T cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: L

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 0.5h L


E-MTAB-10444:Th1 Progesterone 0.5h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 Progesterone 0.5h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 0.5h M

characteristic: title


E-MTAB-10444:Th1 Progesterone 0h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 Progesterone 0h K

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: K

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Progesterone

text: Th1 Progesterone 0h K


E-MTAB-10444:Th1 Progesterone 0h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 Progesterone 0h L

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Progesterone

characteristic: stimulus

text: Th1 Progesterone 0h L


E-MTAB-10444:Th1 Progesterone 0h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 Progesterone 0h M

text: ArrayExpress

text: naive T cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: M

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Progesterone

text: Th1 Progesterone 0h M


E-MTAB-10444:Th1 Progesterone 1h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 Progesterone 1h K

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 1h K

characteristic: title


E-MTAB-10444:Th1 Progesterone 1h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10444:Th1 Progesterone 1h L

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: L

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Th1 Progesterone 1h L


E-MTAB-10444:Th1 Progesterone 1h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 Progesterone 1h M

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: stimulus

text: Th1 Progesterone 1h M


E-MTAB-10444:Th1 Progesterone 24h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 Progesterone 24h K

text: ArrayExpress

text: naive T cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: K

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 24h K


E-MTAB-10444:Th1 Progesterone 24h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 Progesterone 24h L

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 24h L

characteristic: title


E-MTAB-10444:Th1 Progesterone 24h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 Progesterone 24h M

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: M

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Th1 Progesterone 24h M


E-MTAB-10444:Th1 Progesterone 2h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 Progesterone 2h K

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: K

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: stimulus

text: Th1 Progesterone 2h K


E-MTAB-10444:Th1 Progesterone 2h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10444:Th1 Progesterone 2h L

text: ArrayExpress

text: naive T cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: L

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

text: Th1 Progesterone 2h L


E-MTAB-10444:Th1 Progesterone 2h M

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

text: Linkoping University

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10444:Th1 Progesterone 2h M

text: ArrayExpress

text: naive T cell

text: human

text: adult

text: normal

text: M

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: sex

text: Th1 Progesterone 2h M

characteristic: title


E-MTAB-10444:Th1 Progesterone 6h K

characteristic: ENA-FIRST-PUBLIC

characteristic: External Id

text: Linkoping University

text: public

text: E-MTAB-10444:Th1 Progesterone 6h K

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naive T cell

text: human

text: adult

text: normal

text: K

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: female

text: Th1 Progesterone 6h K


E-MTAB-10444:Th1 Progesterone 6h L

text: Linkoping University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: E-MTAB-10444:Th1 Progesterone 6h L

text: ArrayExpress

text: naive T cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: normal

text: L

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: female

characteristic: stimulus

text: Th1 Progesterone 6h L