SAMI00000016-TEST Title

text: Regional Centre for Biotechnology

text: public

text: SAMI00000016-TEST Title

tag: Namespace:Regional Centre for Biotechnology

text: D

characteristic: common name

text: Descripttion here

characteristic: geographic location (altitude)

text: Bahamas

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: single amplified genome

characteristic: investigation type

text: Abies alba

text: E

characteristic: project name

text: Abies alba

text: R

characteristic: sequencing method

text: TEST Title

characteristic: title


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:TEL AVIV UNIVERSITY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in deuterium-depleted water (DDW). Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: aneuploid

characteristic: genotype

text: YPD medium with 40 nanogram per milliliter of aureobasidin A

characteristic: growth condition

text: Candida tropicalis

characteristic: organism

text: Candida tropicalis

text: whole organism

characteristic: organism part

text: Candida tropicalis

text: clinical isolate #12584

characteristic: strain


characteristic: ENA-CHECKLIST

text: TEL AVIV UNIVERSITY

text: public

text: ArrayExpress

text: euploid

text: Candida tropicalis

text: Candida tropicalis

text: whole organism

text: Candida tropicalis

text: clinical isolate #12584

text: Parent

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: MicrobesNG

text: public

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


characteristic: External Id

text: MicrobesNG

characteristic: INSDC center name

text: public

text: SAMPLE_52440wC7_FA1090rmpMporBporBFA1090

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: MicrobesNG

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SAMPLE_52440wG6_FA1090fetArmpMfetA314indfetA47ind

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: MicrobesNG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SAMPLE_52440wH6_FA1090fetArmpMfetA314ind

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: Regional Centre for Biotechnology

text: public

characteristic: Submitter Id

characteristic: absolute air humidity

characteristic: air temperature

text: agricultural

characteristic: building occupancy type

text: exurban

characteristic: building setting

characteristic: carbon dioxide

text: Descripttion here

text: chemical air filter

characteristic: filter type

text: Algeria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: forced air system

characteristic: heating and cooling system type

text: bedroom

characteristic: indoor space

text: single amplified genome

characteristic: investigation type

text: electric light

characteristic: light type

characteristic: occupancy at sampling

characteristic: occupant density at sampling

text: Abies alba

characteristic: organism count

text: E

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characteristic: relative air humidity

text: Abies alba

text: R

characteristic: sequencing method

text: typically occupied

characteristic: space typical state

text: New

characteristic: typical occupant density

text: forced ventilation

characteristic: ventilation type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Regional Centre for Biotechnology

characteristic: INSDC center name

characteristic: INSDC first public

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text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: T

characteristic: assembly software

text: ewq

characteristic: binning parameters

text: WWW

characteristic: binning software

characteristic: description

text: Afghanistan

text: qwe

characteristic: isolation source

text: Abies alba

characteristic: organism

text: E

text: Abies alba

text: R

text: TTTTTT

characteristic: title


characteristic: ENA-CHECKLIST

text: Regional Centre for Biotechnology

text: public

text: T

text: AA

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (longitude)

characteristic: investigation type

text: Abies alba

text: E

characteristic: project name

text: Abies alba

text: R

characteristic: sequencing method

text: TTTTTT


SAMI00000020-TEST Title 1

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characteristic: External Id

text: Regional Centre for Biotechnology

characteristic: INSDC center name

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characteristic: INSDC status

text: SAMI00000020-TEST Title 1

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characteristic: common name

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text: Azerbaijan

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text: TEST Title 1


SAMI00000021-TEST 1B

text: Regional Centre for Biotechnology

text: public

characteristic: SRA accession

text: SAMI00000021-TEST 1B

characteristic: Submitter Id

text: T

characteristic: assembly software

characteristic: binning parameters

characteristic: binning software

characteristic: description

text: Afghanistan

characteristic: isolation source

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text: TEST 1B


characteristic: ENA-CHECKLIST

text: Regional Centre for Biotechnology

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text: Afghanistan

characteristic: geographic location (country and/or sea)

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characteristic: investigation type

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characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Regional Centre for Biotechnology

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characteristic: INSDC status

text: T

text: S

text: Afghanistan

text: Abies alba

text: E

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text: WWWW


text: Quadram Institute Bioscience

text: public

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tag: Namespace:Quadram Institute Bioscience

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

unit: year

characteristic: host age

text: Human

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text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

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characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S50/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S2/2021

characteristic: title


text: Quadram Institute Bioscience

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characteristic: broker name

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

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text: Human

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text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S79/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S18/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S58/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S11/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

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characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

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text: not provided

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characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S13/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S14/2021

characteristic: title


text: Quadram Institute Bioscience

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S22/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: SHEIKHUPURA

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S8/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S9/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: GURANWALA

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S67/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S5/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S16/2021

characteristic: title


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S74/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: KASUR

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S6/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: active surveillance in response to outbreak

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S55/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S75/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S85/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S53/2021

characteristic: title


text: Quadram Institute Bioscience

characteristic: INSDC center name

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characteristic: INSDC last update

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text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S24/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S57/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: female

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S3/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S19/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

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characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S12/2021


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S71/2021

characteristic: title


text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

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text: Pakistan

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text: Human

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text: not provided

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text: Homo sapiens

text: male

text: RAJANPUR

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S86/2021


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S94/2021


text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S102/2021

characteristic: title


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text: Homo sapiens

text: male

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S97/2021


characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S73/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Quadram Institute Bioscience

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text: public

characteristic: SRA accession

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text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S91/2021

characteristic: title


characteristic: External Id

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text: Homo sapiens

text: male

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characteristic: ENA-CHECKLIST

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text: Quadram Institute Bioscience

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text: LAHORE

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text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S47/2021


characteristic: External Id

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text: public

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characteristic: geographic location (country and/or sea)

text: Human

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text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S101/2021

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text: LAHORE

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characteristic: geographic location (country and/or sea)

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text: not provided

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characteristic: organism

text: LAHORE

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text: LAHORE

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characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

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text: not provided

characteristic: organism

text: LAHORE

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text: Homo sapiens

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characteristic: ENA-LAST-UPDATE

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text: LAHORE

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text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S31/2021


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text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: SAHIWAL

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S35/2021

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text: Muhammad Bilal Sarwar

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text: Homo sapiens

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characteristic: ENA-CHECKLIST

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text: male

characteristic: host sex

characteristic: host subject id

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text: LAHORE

characteristic: region

characteristic: sample capture status

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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characteristic: SRA accession

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text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S30/2021

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characteristic: ENA-CHECKLIST

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characteristic: collecting institution

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text: not provided

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text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S36/2021


characteristic: ENA-LAST-UPDATE

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characteristic: INSDC center name

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characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

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text: LAHORE

characteristic: region

text: active surveillance in response to outbreak

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text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S33/2021


characteristic: ENA-CHECKLIST

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text: Quadram Institute Bioscience

characteristic: INSDC first public

text: public

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characteristic: SRA accession

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: broker name

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo sapiens

text: male

characteristic: organism

text: LAHORE

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S43/2021

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

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text: public

text: Quadram Institute Bioscience

text: University of Health Sciences

characteristic: collecting institution

characteristic: collection date

text: Muhammad Bilal Sarwar

characteristic: collector name

text: Pakistan

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: MUZAFARGARH

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S32/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Quadram Institute Bioscience

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: Quadram Institute Bioscience

text: University of Health Sciences

text: Muhammad Bilal Sarwar

text: Pakistan

text: Human

text: not provided

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characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: LAHORE

characteristic: region

characteristic: sample capture status

text: Severe acute respiratory syndrome coronavirus 2 hCoV-19/Pakistan/UHS-PAK-S87/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SC

text: Randox Laboratories

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Randox Laboratories by Randox Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: host scientific name


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Wales

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

characteristic: title


text: SC

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

characteristic: host scientific name


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

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text: public

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text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Scotland

text: Human

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Scotland

text: Human

characteristic: title


text: SC

text: public

characteristic: INSDC status

text: SC

text: Health Services Laboratories

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: host scientific name


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

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text: Lighthouse Lab in Glasgow

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text: Northern Ireland

text: Human

characteristic: sample capture status


text: SC

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characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Wales

text: Human


text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

text: public

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text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: title


text: SIB

text: public

characteristic: INSDC status

text: 20 weeks

characteristic: age

text: Model organism or animal

characteristic: biosamplemodel

text: house mouse

characteristic: common name

text: Healthy Control

characteristic: disease

text: Wild type

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text: Control mouse 1

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text: Mus musculus

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text: Mus musculus

text: Male

characteristic: sex

text: liver

characteristic: tissue


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SIB

characteristic: INSDC center name

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characteristic: SRA accession

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SIB

characteristic: INSDC first public

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characteristic: INSDC status

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characteristic: age

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characteristic: genotype

text: Control mouse 5

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characteristic: sex

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characteristic: ENA-LAST-UPDATE

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text: SIB

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text: liver


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Royal Botanic Gardens Kew

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: MAARTEN J. M. CHRISTENHUSZ

characteristic: collected by

text: ROYAL BOTANIC GARDENS KEW

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Surrey | East Molesey | Home Park

characteristic: geographic location (region and locality)

text: Grassland

characteristic: habitat

text: MAARTEN J. M. CHRISTENHUSZ

characteristic: identified by

text: Independent

text: vegetative structure

characteristic: lifestage

text: Alchemilla arvensis

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Alchemilla arvensis

text: HERMAPHRODITE MONOECIOUS

characteristic: specimen id

characteristic: specimen voucher

text: 3082bba2-b5a4-46b2-ac11-cc23edfacf82-DTOL-specimen

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PTE Medical Microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:PTE Medical Microbiology

characteristic: Submitter Id

text: UAE

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: title


E-MTAB-10538:Parent H99

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Parent H99

text: ArrayExpress

characteristic: broker name

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: mixed

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: SD plate supplemented with 1 microgram per milliliter flucytosine

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

text: Parent H99


E-MTAB-10538:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-10538:Sample 1

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 1


E-MTAB-10538:Sample 10

text: TEL AVIV UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10538:Sample 10

characteristic: Submitter Id

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 10


E-MTAB-10538:Sample 11

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 11

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 11

characteristic: title


E-MTAB-10538:Sample 12

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 12

text: ArrayExpress

characteristic: description

text: aneuploid

characteristic: developmental stage

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 12


E-MTAB-10538:Sample 13

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 13

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 13


E-MTAB-10538:Sample 14

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 14

text: ArrayExpress

text: euploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

text: Sample 14


E-MTAB-10538:Sample 15

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 15

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 15


E-MTAB-10538:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 16

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 16


E-MTAB-10538:Sample 17

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10538:Sample 17

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 17


E-MTAB-10538:Sample 18

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10538:Sample 18

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 18


E-MTAB-10538:Sample 19

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10538:Sample 19

characteristic: Submitter Id

text: ArrayExpress

text: euploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 19


E-MTAB-10538:Sample 2

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 2

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 2

characteristic: title


E-MTAB-10538:Sample 20

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 20

text: ArrayExpress

characteristic: description

text: aneuploid

characteristic: developmental stage

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 20


E-MTAB-10538:Sample 21

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 21

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 21


E-MTAB-10538:Sample 22

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 22

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

text: Sample 22


E-MTAB-10538:Sample 23

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 23

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 23


E-MTAB-10538:Sample 24

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 24

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 24


E-MTAB-10538:Sample 25

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10538:Sample 25

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 25


E-MTAB-10538:Sample 26

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10538:Sample 26

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 26


E-MTAB-10538:Sample 27

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10538:Sample 27

characteristic: Submitter Id

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 27


E-MTAB-10538:Sample 28

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 28

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 28

characteristic: title


E-MTAB-10538:Sample 29

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 29

text: ArrayExpress

characteristic: description

text: aneuploid

characteristic: developmental stage

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 29


E-MTAB-10538:Sample 3

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 3

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 3


E-MTAB-10538:Sample 30

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 30

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

characteristic: organism

text: Cryptococcus neoformans var. grubii H99

text: whole organism

characteristic: organism part

text: Cryptococcus neoformans var. grubii H99

text: Sample 30


E-MTAB-10538:Sample 31

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 31

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 31


E-MTAB-10538:Sample 32

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10538:Sample 32

text: ArrayExpress

text: euploid

text: wild type genotype

text: Cryptococcus neoformans var. grubii H99

text: Cryptococcus neoformans var. grubii H99

text: whole organism

text: Cryptococcus neoformans var. grubii H99

text: Sample 32