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unit: week

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text: ArrayExpress

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text: bread wheat

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text: Chinese Spring

characteristic: cultivar

text: Protocols: Leaf tissue from approximately 5-week-old seedlings was harvested for micrococcal nuclease digestion followed by deep sequencing (MNase-seq). Chinese Spring wheat (CS-42) plants were grown on F2 compost in controlled-environment growth chambers under the following conditions: 60% humidity, long day settings (16 hours light/8 hours dark) with 400 μmol light intensity, and at 22 °C. Nuclei were extracted from 2 grams of leaf tissue in nuclei isolation buffer (1 M sucrose, 60 mM HEPES pH 8.0, 0.6% Triton X-100, 5 mM KCl, 5 mM MgCl2, 5 mM EDTA, 0.4 mM PMSF, 1 mM pepstatin-A, 1× protease inhibitor cocktail), and crosslinked in 1% formaldehyde solution. Chromatin was digested with 50 Kunitz unit/mL of micrococcal nuclease (MNase, NEB, M0247S) at 37 °C for 10 minutes with occasional vortexing. Digestion was halted by incubating on ice and adding EDTA to a final concentration of 20 mM. An equal amount of nuclei lysis buffer (10 mM Tris pH 8.0, 0.2% SDS, 2% Triton X-100, 0.2% sodium deoxycholate, 1× protease inhibitor cocktail) was added. The sample was dialyzed by rotating for 2 hours at 4 °C. The dialyzed sample was centrifuged at 14,000g for 10 minutes, and the supernatant containing fragmented chromatin was extracted. The sample was reverse crosslinked by incubating with 0.25 M NaCl at 65 °C overnight. This was followed by Proteinase K treatment, phenol:chloroform:isoamyl alcohol (25:24:1) extraction and ethanol precipitation. Mononucleosomal fragments were isolated by excising an ~147-bp band from agarose gel. 10 ng of gel-extracted DNA was used for MNase-seq library preparation using a TruSeq Nano DNA library preparation kit (Illumina) according to the manufacturer's instructions.

text: leaf production stage

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text: wild type genotype

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text: Chinese Spring wheat (CS-42) plants were grown on F2 compost in controlled-environment growth chambers under the following conditions: 60% humidity, long day settings (16 hours light/8 hours dark) with 400 mol light intensity, and at 22 C.

characteristic: growth condition

text: Triticum aestivum

text: Triticum aestivum

text: leaf

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text: Triticum aestivum


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text: Protocols: For immunoprecipitation of DMC1 and ASY1, immature pre-emergence spikes were harvested when the flag leaf was fully emerged, approximately 8 weeks after sowing (between Zadoks stages 41 and 43). For immunoprecipitation of histone modififications, leaf tissue from approximately 5-week-old seedlings was harvested. Chinese Spring wheat (CS-42) plants were grown on F2 compost in controlled-environment growth chambers under the following conditions: 60% humidity, long day settings (16 hours light/8 hours dark) with 400 μmol light intensity, and at 22 °C. Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) of DMC1 and ASY1 was performed using a protocol adapted from Lambing et al. (2020) Methods Mol. Biol. 2061. Approximately 12 grams of immature spikes were ground in liquid nitrogen. Nuclei were extracted in nuclei isolation buffer (1 M sucrose, 60 mM HEPES pH 8.0, 0.6% Triton X-100, 5 mM KCl, 5 mM MgCl2, 5 mM EDTA, 0.4 mM PMSF, 1 mM pepstatin-A, 1× protease inhibitor cocktail), and crosslinked in 1% formaldehyde at room temperature for 25 minutes. The crosslinking reaction was quenched with 125 mM glycine and incubated at room temperature for a further 25 minutes. The nuclei were purified from cellular debris via two rounds of filtration through one layer of Miracloth and centrifuged at 2,500g for 25 minutes at 4 °C. The nuclei pellet was resuspended in EB2 buffer (0.25 M sucrose, 1% Triton X-100, 10 mM Tris-HCl pH 8.0, 10 mM MgCl2, 1 mM EDTA, 5 mM DTT, 0.1 mM PMSF, 1 mM pepstatin-A, 1× protease inhibitor cocktail) and centrifuged at 14,000g for 10 minutes at 4 °C. The nuclei pellet was resuspended in lysis buffer (50 mM Tris-HCl pH 8.0, 1% SDS, 10 mM EDTA, 0.1 mM PMSF, 1 mM pepstatin-A) and chromatin was sonicated using a Covaris E220evolution with the following settings: Power: 150V; Cycles per burst: 200; Duty factor: 20%; Time: 180 seconds. Sonicated chromatin was centrifuged at 14,000g and the supernatant was extracted and diluted with 1× volume of ChIP dilution buffer (1.1% Triton X-100, 20 mM Tris-HCl pH 8.0, 167 mM NaCl, 1.1 mM EDTA, 1mM pepstatin-A, 1× protease inhibitor cocktail). The chromatin was incubated overnight at 4 °C with either α-DMC1 (rabbit) or α-ASY1 (guinea pig) antibody (pre-bound to Protein A or G magnetic beads [Dynabeads, Thermo Fisher], respectively, at a concentration of 1:200), alongside a no-antibody control sample. We used polyclonal antibodies that were raised against Arabidopsis DMC1 in rabbit (Sanchez-Moran et al. (2007) Genes Dev. 21) and recombinant wheat ASY1 HORMA domain in guinea pig (Desjardins et al. (2020) Plant Physiol. 183). The beads were collected on a magnetic rack and washed twice with low-salt wash buffer (150 mM NaCl, 0.1% SDS, 1% Triton X-100, 20 mM Tris-HCl pH 8.0, 2 mM EDTA, 0.4 mM PMSF, 1 mM pepstatin-A, 1× protease inhibitor cocktail) and twice with high-salt wash buffer (500 mM NaCl, 0.1% SDS, 1% Triton X-100, 20 mM Tris-HCl pH 8.0, 2 mM EDTA, 0.4 mM PMSF, 1 mM pepstatin-A, 1× protease inhibitor cocktail). Immunoprecipitated DNA--protein complexes were eluted from the beads with elution buffer (1% SDS, 0.1 M NaHCO3) at 65 °C for 15 minutes. Samples were reverse crosslinked by incubating with 0.24 M NaCl at 65 °C overnight. For immunoprecipitation of the histone modifications H3K4me3, H3K9me2 and H3K27me1, nuclei were isolated from 2 grams of leaf tissue and crosslinked in 1% formaldehyde solution. Chromatin was digested with 50 Kunitz unit/mL of micrococcal nuclease (MNase, NEB, M0247S) at 37 °C for 10 minutes with occasional vortexing. Digestion was halted by incubating on ice and adding EDTA to a final concentration of 20 mM. An equal amount of nuclei lysis buffer (10 mM Tris pH 8.0, 0.2% SDS, 2% Triton X-100, 0.2% sodium deoxycholate and 1× cOmplete protease inhibitors [Roche]) was added. Samples were dialyzed by rotating tubes for 2 hours at 4 °C. Dialyzed samples were centrifuged at 14,000g for 10 minutes, and the supernatant containing fragmented chromatin was extracted. For immunoprecipitation of histone modifications, 5 μg of antibody for H3K4me3 (ab8580, Abcam), H3K9me2 (ab1220, Abcam) or H3K27me1 (07-448, Sigma-Aldrich) was added to Protein G magnetic beads (Dynabeads, 10003D, Thermo Fisher). Fragmented chromatin was incubated with antibody-bound beads overnight at 4 °C on a rotating wheel. Beads were washed twice in low-salt buffer, once in high-salt buffer, and once in LiCl buffer. Immunoprecipitated DNA--protein complexes were eluted from the beads with elution buffer (1% SDS, 0.1 M NaHCO3) and reverse crosslinked by incubating with 0.25 M NaCl at 65 °C overnight. Proteins were digested with Proteinase K treatment and DNA was purified with phenol:chloroform:isoamyl alcohol (25:24:1) extraction and ethanol precipitation. Mononucleosomal fragments were isolated by excising an ~147-bp band from agarose gel. 10 ng of ChIP-purified DNA was used for ChIP-seq library preparation using a TruSeq Nano DNA library preparation kit (Illumina) according to the manufacturer's instructions.

characteristic: description

text: flower development stage

text: wild type genotype

text: Triticum aestivum

characteristic: organism

text: Triticum aestivum

text: inflorescence

text: Triticum aestivum

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: bread wheat

text: Chinese Spring

text: leaf production stage

text: wild type genotype

text: Triticum aestivum

text: Triticum aestivum

text: leaf

text: Triticum aestivum


text: UNIVERSITY OF OSLO

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF OSLO

characteristic: Submitter Id

characteristic: collection date

text: Atlantic puffin

characteristic: common name

text: Norway

characteristic: geographic location (country and/or sea)

text: Bjornoya

characteristic: isolation source

text: Fratercula arctica

text: Fratercula arctica

text: Male

characteristic: sex

text: Blood

characteristic: tissue type

text: Raw sequence metadata of Atlantic puffin whole genome resequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

text: public

text: Atlantic puffin

text: Norway

text: Bjornoya

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Blood


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Iceland

text: Ellidaey, Breidafjoerdur

text: Fratercula arctica

characteristic: organism

text: Fratercula arctica

text: Female

text: Feather

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Iceland

text: Ellidaey, Breidafjoerdur

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Feather


text: UNIVERSITY OF OSLO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Atlantic puffin

text: Faroe Islands

text: Faroe Islands

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Feather


text: UNIVERSITY OF OSLO

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Atlantic puffin

text: Faroe Islands

text: Faroe Islands

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Feather


text: UNIVERSITY OF OSLO

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic puffin

text: Canada

text: Gannet Islands

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Feather


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

characteristic: common name

text: Canada

characteristic: geographic location (country and/or sea)

text: Gannet Islands

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Feather


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Iceland

text: Grimsey

characteristic: isolation source

text: Fratercula arctica

text: Fratercula arctica

text: Male

characteristic: sex

text: Feather


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Iceland

text: Grimsey

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Feather

characteristic: tissue type


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

text: public

text: Atlantic puffin

text: Canada

text: Gull Island

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Feather


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Canada

text: Gull Island

text: Fratercula arctica

characteristic: organism

text: Fratercula arctica

text: Male

text: Feather

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Norway

text: Hornoya

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Blood


text: UNIVERSITY OF OSLO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Atlantic puffin

text: Norway

text: Hornoya

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Blood


text: UNIVERSITY OF OSLO

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Atlantic puffin

text: United Kingdom

text: Isle of May

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Feather


text: UNIVERSITY OF OSLO

text: public

characteristic: Submitter Id

characteristic: collection date

text: Atlantic puffin

text: United Kingdom

text: Isle of May

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Feather


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

characteristic: common name

text: Iceland

characteristic: geographic location (country and/or sea)

text: Papey

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Feather


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Iceland

text: Papey

characteristic: isolation source

text: Fratercula arctica

text: Fratercula arctica

text: Female

characteristic: sex

text: Feather


characteristic: ENA-CHECKLIST

text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Norway

text: R�st

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Blood

characteristic: tissue type


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF OSLO

characteristic: INSDC center name

text: public

text: Atlantic puffin

text: Norway

text: R�st

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Blood


text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Norway

text: Gasoyane

text: Fratercula arctica

characteristic: organism

text: Fratercula arctica

text: Male

text: Blood

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF OSLO

text: public

text: Atlantic puffin

text: Norway

text: Gasoyane

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Blood


text: UNIVERSITY OF OSLO

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Atlantic puffin

text: Iceland

text: Heimaey, Vestmannaeyjar

text: Fratercula arctica

text: Fratercula arctica

text: Female

text: Feather


text: UNIVERSITY OF OSLO

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Atlantic puffin

text: Iceland

text: Heimaey, Vestmannaeyjar

text: Fratercula arctica

text: Fratercula arctica

text: Male

text: Feather


name: Blumeria graminis f.sp. triticale isolate THUN-12

text: UNIVERSITY OF ZURICH

text: public

tag: Namespace:UNIVERSITY OF ZURICH

characteristic: Submitter Id

text: Poland

text: Triticosecale

characteristic: host scientific name

characteristic: isolate

text: Triticum aestivum

characteristic: lab host

characteristic: mating type

text: Blumeria graminis f. sp. triticale

text: Blumeria graminis f. sp. triticale

text: f. sp. triticale

characteristic: sub species

text: Conidiospores


PROFFT

characteristic: ENA-CHECKLIST

text: public

text: PROFFT

tag: Namespace:University of Vienna,Centre for Microbiology and Environmental Systems Science, Division of Microbial Ecology

text: Candidatus Profftia tarda

text: Candidatus Profftia tarda

text: Bacteriocyte-associated endosymbiont of Adelges laricis/tardus


characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: collection date

text: common bream

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Abramis brama

characteristic: project name

text: Abramis brama

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: red deer

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Cervus elaphus

characteristic: organism

text: Cervus elaphus

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: fallow deer

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Dama dama

text: Dama dama

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: mouflon

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Ovis aries musimon

characteristic: project name

text: Ovis aries musimon

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: pig

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: dog

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Canis lupus familiaris

text: Canis lupus familiaris

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: horse

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Equus caballus

characteristic: project name

text: Equus caballus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: kulan

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Mongolia

text: human-gut

text: metagenome

text: Equus hemionus kulan

characteristic: organism

text: Equus hemionus kulan

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: red fox

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Vulpes vulpes

text: Vulpes vulpes

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: onager

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Iran

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Equus hemionus

characteristic: project name

text: Equus hemionus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: western European hedgehog

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Hungary

text: human-gut

text: metagenome

text: Erinaceus europaeus

characteristic: organism

text: Erinaceus europaeus

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: common kestrel

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: gut

characteristic: environment (material)

text: Hungary

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Falco tinnunculus

text: Falco tinnunculus

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: long-eared owl

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Hungary

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Asio otus

characteristic: project name

text: Asio otus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ural owl

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Strix uralensis

characteristic: organism

text: Strix uralensis

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: raccoon dog

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Nyctereutes procyonoides

text: Nyctereutes procyonoides

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: chamois

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Rupicapra rupicapra

characteristic: project name

text: Rupicapra rupicapra

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: common carp

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Cyprinus carpio

characteristic: organism

text: Cyprinus carpio

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: European marmot

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Marmota marmota

text: Marmota marmota

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: Alpine ibex

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Capra ibex

characteristic: project name

text: Capra ibex

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: gray wolf

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Canis lupus

characteristic: organism

text: Canis lupus

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: rock ptarmigan

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Lagopus muta

text: Lagopus muta

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: gayal

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Viet Nam

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Bos frontalis

characteristic: project name

text: Bos frontalis

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sambar

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Viet Nam

text: human-gut

text: metagenome

text: Rusa unicolor

characteristic: organism

text: Rusa unicolor

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Red-cheeked gibbon

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Nomascus gabriellae

text: Nomascus gabriellae

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: cattle

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Bos taurus

characteristic: project name

text: Bos taurus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Tawny owl

text: 16S amplicon

text: human gut microbiome

text: gut

text: gut

text: Austria

text: human-gut

text: metagenome

text: Strix aluco

characteristic: organism

text: Strix aluco

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: Bank vole

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: gut

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Myodes glareolus

text: Myodes glareolus

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: northern tree shrew

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Tupaia belangeri

characteristic: project name

text: Tupaia belangeri

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: grey heron

text: 16S amplicon

text: human gut microbiome

text: gut

text: gut

text: Austria

text: human-gut

text: metagenome

text: Ardea cinerea

characteristic: organism

text: Ardea cinerea

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: white-tailed eagle

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: gut

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Haliaeetus albicilla

text: Haliaeetus albicilla

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: Fat dormouse

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Glis glis

characteristic: project name

text: Glis glis

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Domestic goose

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Germany

text: human-gut

text: metagenome

text: Anser anser

characteristic: organism

text: Anser anser

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: European greenfinch

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Hungary

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Chloris chloris

text: Chloris chloris

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Great Tit

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Hungary

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Parus major

characteristic: project name

text: Parus major

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: roach minnow

text: 16S amplicon

text: human gut microbiome

text: gut

text: gut

text: Austria

text: human-gut

text: metagenome

text: Rutilus rutilus

characteristic: organism

text: Rutilus rutilus

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: agile frog

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Rana dalmatina

text: Rana dalmatina

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: domestic cat

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Felis catus

characteristic: project name

text: Felis catus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: red deer

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Cervus elaphus

characteristic: organism

text: Cervus elaphus

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: sheep

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Ovis aries

text: Ovis aries

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Domestic goose

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Anser anser

characteristic: project name

text: Anser anser

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: rabbit

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Oryctolagus cuniculus

characteristic: organism

text: Oryctolagus cuniculus

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Alpine ibex

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Capra ibex

text: Capra ibex

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: garden dormouse

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Eliomys quercinus

characteristic: project name

text: Eliomys quercinus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: carrion crow

text: 16S amplicon

text: human gut microbiome

text: gut

text: gut

text: Austria

text: human-gut

text: metagenome

text: Corvus corone

characteristic: organism

text: Corvus corone

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: Aesculapian.Snake

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Zamenis longissimus

text: Zamenis longissimus

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: beach marten

text: 16S amplicon

text: human gut microbiome

text: gut

text: gut

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Martes foina

characteristic: project name

text: Martes foina

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: pygmy slow loris

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Viet Nam

text: human-gut

text: metagenome

text: Nycticebus pygmaeus

characteristic: organism

text: Nycticebus pygmaeus

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Red shanked douc langur

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Pygathrix nemaeus

text: Pygathrix nemaeus

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: Hatinh langur

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Viet Nam

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Trachypithecus hatinhensis

characteristic: project name

text: Trachypithecus hatinhensis

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: X240_Southern_White_cheeked_Gibbon_16Sarc

characteristic: Submitter Id

text: southern white-cheeked gibbon

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Viet Nam

text: human-gut

text: metagenome

text: Nomascus siki

characteristic: organism

text: Nomascus siki

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: Italian wall lizard

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Croatia

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Podarcis siculus

text: Podarcis siculus

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: Dalmatian.Tortoise

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Croatia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Testudo hermanni boettgeri

characteristic: project name

text: Testudo hermanni boettgeri

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: black-bellied hamster

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

text: human-gut

text: metagenome

text: Cricetus cricetus

characteristic: organism

text: Cricetus cricetus

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: Eurasian lynx

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Lynx lynx

text: Lynx lynx

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: mute swan

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Hungary

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Cygnus olor

characteristic: project name

text: Cygnus olor

text: MiSeq

characteristic: sequencing method


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: blackbird

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Hungary

text: human-gut

text: metagenome

text: Turdus merula

characteristic: organism

text: Turdus merula

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: collection date

text: western marsh harrier

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: gut

characteristic: environment (material)

text: Austria

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Circus aeruginosus

text: Circus aeruginosus

text: MiSeq


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: rook

text: 16S amplicon

text: human gut microbiome

text: gut

text: feces

text: Austria

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: Corvus frugilegus

characteristic: project name

text: Corvus frugilegus

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Ring-necked pheasant

text: 16S amplicon

text: human gut microbiome

text: gut

text: gut

text: Austria

text: human-gut

text: metagenome

text: Phasianus colchicus

characteristic: organism

text: Phasianus colchicus

text: MiSeq

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: collection date

text: western gray kangaroo

characteristic: common name

text: 16S amplicon

characteristic: description

text: human gut microbiome

characteristic: environment (biome)

text: gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: Macropus fuliginosus

text: Macropus fuliginosus

text: MiSeq