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text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

text: FOODON_03301813:mango (whole, raw); FOODON_03303956:mango (pulp)

characteristic: environment (feature)

text: interior flesh rinsate

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text: duplicate sample(s):NA

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text: AMR burden in ready-to-eat foods

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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characteristic: Submitter Id

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text: United Kingdom

characteristic: geographic location (country and/or sea)

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characteristic: organism

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characteristic: INSDC status

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characteristic: environment (biome)

text: FOODON_03309928:pepper (whole, raw)

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characteristic: INSDC status

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text: exterior rinsate

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characteristic: Submitter Id

text: FOODON_00003349:white onion (whole, raw); FOODON_03316887:vegetable (peeled)

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text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

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characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

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characteristic: INSDC status

characteristic: collection date

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characteristic: SRA accession

characteristic: Submitter Id

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characteristic: Submitter Id

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text: duplicate sample(s):NA

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text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:strawberries


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

text: FOODON_03309927:tomato (whole, raw)

characteristic: environment (feature)

text: exterior rinsate

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:tomatoes


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: exterior rinsate

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq; ONT PromethION

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:white grapes

characteristic: title


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

text: retail food; FOODON_00001002:food product

characteristic: environment (biome)

text: FOODON_03302458:cheddar cheese

characteristic: environment (feature)

text: cheese

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:cheddar cheese


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: FOODON_03301724:pear (whole, raw)

text: exterior rinsate

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:pears


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

text: FOODON_03309927:tomato (whole, raw)

characteristic: environment (feature)

text: exterior rinsate

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:tomatoes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: FOODON_03305663:orange juice (pasteurized)

text: fruit juice

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:orange juice pasteurised


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

text: FOODON_03307458:cow milk (semi-skimmed)

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:semi skimmed milk


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: FOODON_03542657:26570 - cow milk, skimmed (low fat) (efsa foodex2)

text: milk

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:skimmed milk

characteristic: title


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: duplicate sample(s):RTEF2672461

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:whole milk


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: milk

text: duplicate sample(s):RTEF2672463

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:whole milk


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:whole milk

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: FOODON_03307458:cow milk (semi-skimmed)

text: milk

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:semi skimmed milk


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:skimmed milk


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: milk

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:whole milk

characteristic: title


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: milk

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:whole milk


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: FOODON_03305800:vanilla ice cream

text: cream

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:vanilla ice cream


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: interior flesh rinsate

characteristic: environment (material)

text: duplicate sample(s):RTEF2672433

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:kiwi fruit

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: FOODON_03302458:cheddar cheese

text: cheese

text: duplicate sample(s):NA

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:cheddar cheese


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

text: FOODON_03315506:banana flesh; FOODON_00002655:food (peeled)

characteristic: environment (feature)

text: interior (peeled) rinsate

characteristic: environment (material)

text: duplicate sample(s):RTEF2664712

text: United Kingdom

text: restricted access

characteristic: geographic location (latitude)

text: restricted access

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:bananas


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Fera Science Limited

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: interior (peeled) rinsate

text: duplicate sample(s):RTEF2664706

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

text: AMR burden in ready-to-eat foods

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: source material identifiers

text: 16S rRNA

characteristic: target gene

text: V4 515F (Parada) - 806R (Apprill)

characteristic: target subfragment

text: Ready-to-eat food:bananas

characteristic: title


characteristic: External Id

text: Fera Science Limited

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

text: interior (peeled) rinsate

characteristic: environment (material)

text: duplicate sample(s):NA

text: United Kingdom

text: restricted access

text: restricted access

text: metagenome

text: food metagenome

characteristic: organism

characteristic: pcr primers

text: AMR burden in ready-to-eat foods

characteristic: project name

text: food metagenome

text: Illumina MiSeq; Illumina NovaSeq

characteristic: sequencing method

text: 16S rRNA

text: V4 515F (Parada) - 806R (Apprill)

text: Ready-to-eat food:bananas


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wellcome Sanger institute

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:Wellcome Sanger institute

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: Protocols: Full thickness uterine wall samples were obtained from deceased transplant organ donors (A13, A30) after ethical approval (reference 15/EE/0152, East of England-Cambridge South Research Ethics Committee) and informed consent from the donor families. Uterus was removed within 1 hour of circulatory arrest. RNA was converted into cDNA and amplified as part of the 10x v2 chemistry Libraries were constructed using the 10x v2 chemistry

characteristic: description

text: adult

characteristic: developmental stage

text: collagenase

characteristic: digestion treatment

characteristic: individual

text: proliferative stage

characteristic: menstrual cycle stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

text: Wellcome Sanger institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: adult

text: collagenase

text: proliferative stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: myometrium

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wellcome Sanger institute

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: human

text: adult

text: collagenase

text: early-secretory stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

text: Homo sapiens

text: female


text: Wellcome Sanger institute

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: trypsin

text: early-secretory stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

text: Homo sapiens

text: female


text: Wellcome Sanger institute

text: public

text: ArrayExpress

text: human

text: Protocols: Endometrial biopsies were obtained from live donors with written informed consent from all participants recruited from the Newcastle Upon Tyne Hospitals after ethical approval (reference 16/NE/0167, North East - Newcastle & North Tyneside 1 Research Ethics Committee). Endometrial biopsies were obtained using a disposable endometrial cell sampler, starting from the uterine fundus and moving downward to the internal cervical ostium. None of the subjects were on hormonal treatments for at least 3 months prior to the procedure. RNA was converted into cDNA and amplified as part of the 10x v3 chemistry Libraries were constructed using the 10x v3 chemistry

text: adult

text: collagenase

characteristic: digestion treatment

characteristic: individual

text: late-secretory stage

characteristic: menstrual cycle stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

text: Wellcome Sanger institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: adult

text: trypsin

text: late-secretory stage

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: endometrium

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Wellcome Sanger institute

characteristic: INSDC last update

text: public

text: ArrayExpress

text: human

text: adult

text: collagenase

text: mid-secretory stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

text: Homo sapiens

text: female

characteristic: title


text: Wellcome Sanger institute

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

characteristic: description

text: adult

text: trypsin

text: mid-secretory stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

text: Homo sapiens

text: female


text: Wellcome Sanger institute

text: public

text: ArrayExpress

text: human

text: adult

characteristic: developmental stage

text: collagenase

characteristic: digestion treatment

characteristic: individual

text: proliferative stage

characteristic: menstrual cycle stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

characteristic: organism part

text: Homo sapiens

text: female


characteristic: External Id

text: Wellcome Sanger institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: adult

text: trypsin

text: proliferative stage

text: Homo sapiens

text: Homo sapiens

text: endometrium

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IMPERIAL COLLEGE LONDON

characteristic: INSDC last update

text: public

tag: Namespace:IMPERIAL COLLEGE LONDON

characteristic: collection date

text: Microbial community

characteristic: environment (biome)

text: Vaginal fornix

characteristic: environment (feature)

text: Mucosa

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-vaginal

characteristic: human vaginal environmental package

text: metagenome

characteristic: investigation type

text: human vaginal metagenome

characteristic: organism

text: Vaginal microbiome in a pregnancy cohort

characteristic: project name

text: human vaginal metagenome

text: Illumina MiSeq

characteristic: sequencing method

characteristic: target gene


Angostura WSSV

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Universida autonoma de Baja California

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Angostura WSSV

tag: Namespace:Universida autonoma de Baja California

characteristic: Submitter Id

text: Aquapacific SA de CV

characteristic: collecting institution

text: Joel Lizárraga Valdez

characteristic: collector name

text: To identify potential causative genes responsible for increasing virulence of WSSV, the pathogenicity of three isolates from different geographical origins (one from Sonora: ‘Sonora’, and two from Sinaloa: ‘CIAD’, and ‘Angostura’) were evaluated in vivo in white shrimp (Peneaus vannamei) infection assays. Whole WSSV genomes were deep sequenced from Whole WSSV genomes were deep sequenced from infected shrimp tissues and analyzed against published sequences from the GenBank database.

characteristic: description

text: Mexico

text: Angostura, Sonora

characteristic: geographic location (region and locality)

unit: centuries

characteristic: host age

text: White shrimp

characteristic: host common name

text: dead

characteristic: host disease outcome

text: diseased

characteristic: host health state

text: Penaeus vannamei

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: White spot syndrome virus

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: White spot syndrome virus

text: In-vivo comparative virulence of different White Spot Syndrome Virus isolates in Penaeus vannamei and whole genome comparison analysis

characteristic: title

characteristic: virus identifier


Sonora WSSV

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universida autonoma de Baja California

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Sonora WSSV

text: Universidad Autónoma de Baja California

characteristic: collection date

text: Jorge De la Rosa Vélez

text: Mexico

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Sonora

text: White shrimp

text: dead

text: diseased

text: Penaeus vannamei

text: not provided

text: White spot syndrome virus

characteristic: organism

text: White spot syndrome virus


text: LUMC

text: public

characteristic: Submitter Id

characteristic: description

text: gut

characteristic: environment (biome)

text: feces

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human gut metagenome

text: Colonization resistance against ESBL-producing E. coli

characteristic: project name

text: human gut metagenome

text: Shotgun sequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUMC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Zymo Biomics cell material

text: mock

text: mock

text: mock

text: Netherlands

text: human-gut

text: metagenome

text: metagenome

text: metagenome

text: Shotgun sequencing

characteristic: title


text: LUMC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Zymo Biomics DNA standard

text: mock

text: mock

text: mock

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: metagenome

text: metagenome

characteristic: organism

text: metagenome

text: Shotgun sequencing


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

tag: Namespace:NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: cell type

text: human

characteristic: common name

text: A549 cells transduced with hACE2 and infected with SARS-CoV-2 at an MOI of 0.1 for 48 hrs in the presence of STM2120

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: human

text: A549 cells transduced with hACE2 and infected with SARS-CoV-2 at an MOI of 0.1 for 48 hrs in the presence of STM2457

text: Homo sapiens

text: Homo sapiens


characteristic: External Id

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human

text: MRC5 cells infected with HCoV-OC43 at an MOI of 3 for 24 hrs in the presence of STM2120

text: Homo sapiens

text: Homo sapiens


text: THE UNIVERSITY OF MELBOURNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:THE UNIVERSITY OF MELBOURNE

text: New Zealand

text: diseased

characteristic: host health state

text: homo sapien

characteristic: host scientific name

characteristic: isolate

text: blood

characteristic: isolation source

text: Enterococcus faecium

text: Enterococcus faecium

characteristic: strain

text: 2 mg/mL

characteristic: title

text: 1 mg/mL


text: THE UNIVERSITY OF MELBOURNE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: New Zealand

characteristic: geographic location (country and/or sea)

text: diseased

text: homo sapien

text: hepatic abscess

text: Enterococcus faecium

characteristic: organism

text: Enterococcus faecium

text: 256 mg/mL

text: 256 mg/mL


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EURAC Research

text: public

tag: Namespace:EURAC Research

text: human

characteristic: common name

text: Italy

text: Homo sapiens

text: Homo sapiens

text: calculus

characteristic: tissue type

text: Ancient calculus


Blank

characteristic: External Id

text: EURAC Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Blank

text: human

text: Italy

text: Homo sapiens

text: Homo sapiens

text: Blank

text: Ancient calculus


text: public

tag: Namespace:Key Laboratory of Environmental and Applied Microbiology, CAS

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: gut metagenome

characteristic: project name

text: gut metagenome

text: MiSeq

characteristic: sequencing method

text: Corpse


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Key Laboratory of Environmental and Applied Microbiology, CAS

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: soil

text: soil

text: soil

text: China

characteristic: geographic location (country and/or sea)

text: host-associated

text: mimarks-survey

text: gut metagenome

characteristic: organism

text: gut metagenome

text: MiSeq

text: Corpse

characteristic: title


Inoculum

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Inoculum

tag: Namespace:Wetsus, European centre of excellence for sustainable water technology

text: sulfide-oxidizing reactor

characteristic: environment (biome)

text: bioreactor

characteristic: environment (feature)

text: sludge

text: Netherlands

text: mimarks-survey

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: bacterium

text: Effect of process conditions on the performance of a dual-reactor biodesulfurization process

text: bacterium

text: Illumina MiSeq

text: Seed sludge for all the runs


characteristic: ENA-CHECKLIST

text: Wetsus, European centre of excellence for sustainable water technology

text: public

text: sulfide-oxidizing reactor

text: bioreactor

text: sludge

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: bacterium

characteristic: project name

text: bacterium

text: Illumina MiSeq

characteristic: sequencing method

text: Sludge sample collected from the end of Run 1


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: sulfide-oxidizing reactor

text: bioreactor

text: sludge

text: Netherlands

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: bacterium

characteristic: organism

text: bacterium

text: Illumina MiSeq

text: Sludge sample collected from the end of Run 3


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sulfide-oxidizing reactor

characteristic: environment (biome)

text: bioreactor

text: sludge

text: Netherlands

text: mimarks-survey

text: bacterium

text: bacterium

text: Illumina MiSeq

text: Sludge sample collected from the end of Run 4

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: sulfide-oxidizing reactor

text: bioreactor

characteristic: environment (feature)

text: sludge

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

characteristic: miscellaneous environmental package

text: bacterium

text: bacterium

text: Illumina MiSeq

text: Sludge sample collected from the end of Run 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: sulfide-oxidizing reactor

text: bioreactor

text: sludge

text: Netherlands

text: mimarks-survey

text: bacterium

characteristic: project name

text: bacterium

text: Illumina MiSeq

characteristic: sequencing method

text: Sludge sample collected from the end of Run 6


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sulfide-oxidizing reactor

text: bioreactor

text: sludge

text: Netherlands

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: bacterium

characteristic: organism

text: bacterium

text: Illumina MiSeq

text: Sludge sample collected from the end of Run 7


characteristic: ENA-CHECKLIST

text: Korea Food Research Institute

text: public

tag: Namespace:Korea Food Research Institute

text: Lung cancer

characteristic: description

text: human oral metagenome

text: human oral metagenome

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: Korea Food Research Institute

text: public

text: Lung cancer

text: human gut metagenome

text: human gut metagenome


E-MTAB-10337:MDA-MB-468 BCatOE -1

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10337:MDA-MB-468 BCatOE -1

tag: Namespace:Department of Development and Regeneration, Stem Cell Institute, KU Leuven

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: breast invasive ductal carcinoma cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: 3 samples from each cell type were collected at independent passages at 80% confluence, grown in the same conditions. total RNA was obtained from cells using the GenElute mammalian total RNA miniprep kit from Sigma (Sigma, RTN350-1KT) Libraries were prepared from 250 ng of total RNA using the KAPA stranded mRNA-seq kit (Roche, KK8421) according to the manufacturer's specifications. KAPA-single index adapters (Roche, KK8700) were added to A-tailed cDNA, and libraries were amplified by 12 cycles of PCR. Finally, libraries were purified on Agencourt AMPure XP beads (Beckman Coulter, A63881). Libraries were controlled for fragment size using the High Sensitivity DNA analysis kit (Agilent, 5067-4626) on an Agilent Bioanalyzer 2100. Each library was diluted to 4 nM and pooled for sequencing.

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: overexpression of active beta-catenin

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: carboplatin resistant

characteristic: phenotype

text: Homo sapiens

text: MDA-MB-468 BCatOE -1


E-MTAB-10337:MDA-MB-468 BCatOE -2

characteristic: External Id

text: Department of Development and Regeneration, Stem Cell Institute, KU Leuven

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10337:MDA-MB-468 BCatOE -2

characteristic: Submitter Id

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: triple-negative breast cancer

text: overexpression of active beta-catenin

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: carboplatin resistant

text: Homo sapiens

text: MDA-MB-468 BCatOE -2


E-MTAB-10337:MDA-MB-468 BCatOE -3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10337:MDA-MB-468 BCatOE -3

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

characteristic: description

text: adult

text: triple-negative breast cancer

text: overexpression of active beta-catenin

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: carboplatin resistant

text: Homo sapiens

text: MDA-MB-468 BCatOE -3

characteristic: title


E-MTAB-10337:MDA-MB-468 Car-tolerant -1

text: public

text: E-MTAB-10337:MDA-MB-468 Car-tolerant -1

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: breast invasive ductal carcinoma cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: carboplatin tolerant

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: carboplatin resistant

text: Homo sapiens

text: MDA-MB-468 Car-tolerant -1


E-MTAB-10337:MDA-MB-468 Car-tolerant -2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10337:MDA-MB-468 Car-tolerant -2

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: triple-negative breast cancer

text: carboplatin tolerant

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: carboplatin resistant

characteristic: phenotype

text: Homo sapiens

text: MDA-MB-468 Car-tolerant -2


E-MTAB-10337:MDA-MB-468 Car-tolerant -3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10337:MDA-MB-468 Car-tolerant -3

characteristic: Submitter Id

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: triple-negative breast cancer

text: carboplatin tolerant

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: carboplatin resistant

text: Homo sapiens

text: MDA-MB-468 Car-tolerant -3


E-MTAB-10337:MDA-MB-468 Parental -1

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10337:MDA-MB-468 Parental -1

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: breast invasive ductal carcinoma cell

text: human

characteristic: description

text: adult

text: triple-negative breast cancer

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: mammary gland

text: carboplatin sensitive

text: Homo sapiens

text: MDA-MB-468 Parental -1

characteristic: title


E-MTAB-10337:MDA-MB-468 Parental -2

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10337:MDA-MB-468 Parental -2

text: ArrayExpress

text: breast invasive ductal carcinoma cell

characteristic: cell type

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: triple-negative breast cancer

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

text: carboplatin sensitive

text: Homo sapiens

text: MDA-MB-468 Parental -2


E-MTAB-10337:MDA-MB-468 Parental -3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

text: E-MTAB-10337:MDA-MB-468 Parental -3

text: ArrayExpress

text: breast invasive ductal carcinoma cell

text: human

text: adult

text: triple-negative breast cancer

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: mammary gland

characteristic: organism part

text: carboplatin sensitive

characteristic: phenotype

text: Homo sapiens

text: MDA-MB-468 Parental -3


SUP05 MAG-1

characteristic: ENA-LAST-UPDATE

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SUP05 MAG-1

tag: Namespace:MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: New Zealand

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: uncultured SUP05 cluster bacterium

text: Kermadec MAG

characteristic: project name

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: SUP05 niche partitioning in meso- and bathypelagic plumes

text: water

characteristic: water environmental package


SUP05 MAG-2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SUP05 MAG-2

text: New Zealand

text: metagenome-assembled genome

text: uncultured SUP05 cluster bacterium

characteristic: organism

text: Kermadec MAG

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq 2500

characteristic: title

text: water


SUP05 MAG-3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SUP05 MAG-3

characteristic: Submitter Id

characteristic: collection date

characteristic: environment (biome)

characteristic: environment (feature)

characteristic: environment (material)

text: New Zealand

text: metagenome-assembled genome

text: uncultured SUP05 cluster bacterium

text: Kermadec MAG

text: uncultured SUP05 cluster bacterium

text: Illumina HiSeq 2500

text: water