characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 831C3

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC mutant

characteristic: strain


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 831C4

characteristic: description

text: Control

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC mutant

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 832C1

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC WT

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 832C2

characteristic: description

text: Control

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC WT

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 832C3

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC WT

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 833C1

characteristic: description

text: Control

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

text: APC WT

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 833C2

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: APC WT

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 833C3

characteristic: description

text: Control

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

text: APC WT

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 833C4

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: APC WT

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 871TCS1

characteristic: description

text: TCS

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 871TCS2

text: TCS

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 871TCS3

characteristic: description

text: TCS

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 871TCS5

text: TCS

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 872C1

characteristic: description

text: Control

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC mutant

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 872C2

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC mutant

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 872C3

characteristic: description

text: Control

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC mutant

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 872C4

text: Control

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC mutant

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 948C1

characteristic: description

text: HFD (STZ)

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 948C2

text: HFD (STZ)

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 948C3

characteristic: description

text: HFD (STZ)

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 955TCS1

text: TCS

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 955TCS2

characteristic: description

text: TCS

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 955TCS3

text: TCS

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: female

characteristic: sex

text: APC

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 955TCS4

characteristic: description

text: TCS

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: female

text: APC

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: TRUE

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: researh facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

text: days

text: g

characteristic: latitude

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: metagenome

text: UCSDMI

text: TRUE

text: control blank

characteristic: sample type

text: metagenome


text: UCSDMI

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

characteristic: description

text: TRUE

characteristic: elevation

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: researh facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: days

text: g

text: Decimal degrees

text: Decimal degrees

text: metagenome

text: UCSDMI

text: TRUE

text: control blank

text: metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:Oxford University Clinical Research Unit, Viet Nam

characteristic: collection date

text: Viet Nam

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: homosapiens

characteristic: host scientific name

text: klebsiella pneumoniae

characteristic: isolate

text: blood

characteristic: isolation source

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LSHTM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Salmonella enterica

text: Salmonella enterica

text: Non-typhoidal Salmonella from The Gambia


text: EMBL-EBI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3 to 5

unit: month

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Tunica albuginea was removed, and testes were rinsed twice in DMEM supplemented with 1mM of sodium pyruvate (Invitrogen 11360070) and 1.5mM of sodium lactate (Sigma L7022). Testes tubules were then enzymatically digested with 0.5mg/ml of type XI collagenase (Sigma c7657) and incubated in water bath at 32oC for 6-7 min at 700 rpm shaking. Further digestion to single cells was achieved with 0.05% Trypsin-EDTA (Thermofisher 25300054) in the presence of 0.05 mg/ml DNaseI (Sigma DN-25). After digestion cells were filtered through 70-um cell strainer (14-959-49A; Falcon). Cells were then pelleted by centrifugation at 1000rpm for 10 min and resuspended in PBS with 3%BSA and 2mM EDTA to reduce cell adhesion. Cells were then incubated with Biotin Rat Anti-Mouse CD9 Clone KMC8 (BD Bioscience 558749) in 1:100 dilution for 15 minutes on ice and flicked every 5 minutes. Consequently, cells were washed three times with PBS- 3%BSA cells and were incubated with 10x of Streptavidin MicroBeads (Mylteni Biotech 130-048-101) for 15 min at 4oC rocking. After three washes the CD9-enriched cells were separated with LC Columns on magnetic stand. The CD9 negative cells that passed through were discarded and columns were washed 3 times with PBS3%BSA. The CD9-enriched cells were then eluted with PBS3% BSA by removing the columns from the magnetic stand and pushing the cell suspension through the column with a plunger. Cells were further incubated on ice for 30 min with c-Kit-PE-Cy7 FACS antibody (eBioscience 25-1171 clone 2B8) to exclude differentiating spermatogonia. For FACS staining of undifferentiated spermatogonia, cells filtered through 70-um cell strainer were centrifuged at 1000 rpm and 5-7 million cells per sample were stained with the fluorophore-conjugated antibodies in PBS 3%/FBS/0.01% sodium azide on ice. FACS antibodies used in this study were as follows: CD45-biotin (eBioscience 13-0451), CD-51-biotin (BioLegend 104104), streptavidin-qDot605 (eBioscience 93-4317), CD9 APC (eBioscience 17-0091-82) and SYTOX Blue (Life Technologies) as living dye. 100 GFRa1-GFP positive and Miwi2-tdTom positive cells per mouse were lysed in SMARTseq2 Lysis buffer (0.4% TritonX (Sigma 9002-93-1)), 2U μl-1 RNase Inhibitor (Takara 2313A) and 1 μl of 10mM dNTPs). 1 μl of 100 μM oligo dT primer with the following sequence: AAGCAGTGGTATCAACGCAGAGTAC(T)^30 VN, was added to the lysis buffer. RT was performed, this added 2-5 untemplated nucleotides to the cDNA 3′ end. A template-switching oligo (TSO) is added, carrying 2 riboguanosines and a modified guanosine to produce a LNA as the last base at the 3′ end. After the first-strand reaction, the cDNA is amplified using a limited number of cycles. Next, tagmentation is used to construct sequencing libraries quickly and efficiently from the amplified cDNA.

characteristic: description

text: adult

characteristic: developmental stage

text: GFRa1GFP/+; Miwi2tdTom/+

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: 14 to 16

text: ArrayExpress

text: house mouse

text: adult

text: GFRa1GFP/+; Miwi2tdTom/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

text: Mus musculus

text: male

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3 to 5

text: ArrayExpress

text: house mouse

text: busulfan

characteristic: compound

text: adult

text: GFRa1GFP/+; Miwi2tdTom/+

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


text: EMBL-EBI

text: public

text: 3 to 5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: spermatogonium

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Tunica albuginea was removed, and testes were rinsed twice in DMEM supplemented with 1mM of sodium pyruvate (Invitrogen 11360070) and 1.5mM of sodium lactate (Sigma L7022). Testes tubules were then enzymatically digested with 0.5mg/ml of type XI collagenase (Sigma c7657) and incubated in water bath at 32oC for 6-7 min at 700 rpm shaking. Further digestion to single cells was achieved with 0.05% Trypsin-EDTA (Thermofisher 25300054) in the presence of 0.05 mg/ml DNaseI (Sigma DN-25). After digestion cells were filtered through 70-um cell strainer (14-959-49A; Falcon). Cells were then pelleted by centrifugation at 1000rpm for 10 min and resuspended in PBS with 3%BSA and 2mM EDTA to reduce cell adhesion. Cells were then incubated with Biotin Rat Anti-Mouse CD9 Clone KMC8 (BD Bioscience 558749) in 1:100 dilution for 15 minutes on ice and flicked every 5 minutes. Consequently, cells were washed three times with PBS- 3%BSA cells and were incubated with 10x of Streptavidin MicroBeads (Mylteni Biotech 130-048-101) for 15 min at 4oC rocking. After three washes the CD9-enriched cells were separated with LC Columns on magnetic stand. The CD9 negative cells that passed through were discarded and columns were washed 3 times with PBS3%BSA. The CD9-enriched cells were then eluted with PBS3% BSA by removing the columns from the magnetic stand and pushing the cell suspension through the column with a plunger. Cells were further incubated on ice for 30 min with c-Kit-PE-Cy7 FACS antibody (eBioscience 25-1171 clone 2B8) to exclude differentiating spermatogonia. For FACS staining of undifferentiated spermatogonia, cells filtered through 70-um cell strainer were centrifuged at 1000 rpm and 5-7 million cells per sample were stained with the fluorophore-conjugated antibodies in PBS 3%/FBS/0.01% sodium azide on ice. FACS antibodies used in this study were as follows: CD45-biotin (eBioscience 13-0451), CD-51-biotin (BioLegend 104104), streptavidin-qDot605 (eBioscience 93-4317), CD9 APC (eBioscience 17-0091-82) and SYTOX Blue (Life Technologies) as living dye. GFRa1-GFP positive and Miwi2-tdTom positive single cells from 2 adult, 2 aged and 3 regenerated mice were sorted and lysed in SMARTseq2 Lysis buffer (0.4% TritonX (Sigma 9002-93-1)), 2U μl-1 RNase Inhibitor (Takara 2313A) and 1 μl of 10mM dNTPs). 1 μl of 100 μM oligo dT primer with the following sequence: AAGCAGTGGTATCAACGCAGAGTAC(T)^30 VN, was added to the lysis buffer. RT was performed, this added 2-5 untemplated nucleotides to the cDNA 3′ end. A template-switching oligo (TSO) is added, carrying 2 riboguanosines and a modified guanosine to produce a LNA as the last base at the 3′ end. After the first-strand reaction, the cDNA is amplified using a limited number of cycles. Next, tagmentation is used to construct sequencing libraries quickly and efficiently from the amplified cDNA.

characteristic: description

text: adult

characteristic: developmental stage

text: GFP positive; dtTom negative

characteristic: fraction

text: GFRa1GFP/+; Miwi2tdTom/+

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: 3 to 5

text: ArrayExpress

text: spermatogonium

text: house mouse

text: adult

text: GFP negative; dtTom positive

text: GFRa1GFP/+; Miwi2tdTom/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 14 to 16

characteristic: age

text: ArrayExpress

characteristic: broker name

text: spermatogonium

text: house mouse

text: adult

text: GFP negative; dtTom positive

text: GFRa1GFP/+; Miwi2tdTom/+

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-CHECKLIST

text: EMBL-EBI

text: public

text: 14 to 16

text: ArrayExpress

text: spermatogonium

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: GFP positive; dtTom negative

characteristic: fraction

text: GFRa1GFP/+; Miwi2tdTom/+

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMBL-EBI

text: public

text: 3 to 5

text: ArrayExpress

text: spermatogonium

text: house mouse

text: busulfan

characteristic: compound

text: adult

text: GFP positive; dtTom negative

text: GFRa1GFP/+; Miwi2tdTom/+

text: Mus musculus

characteristic: organism

text: Mus musculus

text: testis

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

text: EMBL-EBI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 3 to 5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: spermatogonium

text: house mouse

text: busulfan

text: adult

text: GFP negative; dtTom positive

text: GFRa1GFP/+; Miwi2tdTom/+

text: Mus musculus

text: Mus musculus

text: testis

text: Mus musculus

text: male


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: HEBREW UNIVERSITY OF JERUSALEM

text: public

tag: Namespace:HEBREW UNIVERSITY OF JERUSALEM

characteristic: collection date

text: host organism

characteristic: environment (biome)

text: anatomical entity

characteristic: environment (feature)

text: organic material

characteristic: environment (material)

text: Ecuador

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

characteristic: host-associated environmental package

text: mimarks-survey

characteristic: investigation type

text: Philornis downsi

text: Philornis downsi gut microbiome

characteristic: project name

text: Philornis downsi

text: Illumina Miniseq

characteristic: sequencing method

text: 16s rRNA gene survey of the gut-microbiome associated with Philornis downsi


characteristic: ENA-CHECKLIST

characteristic: External Id

text: BAYLOR COLLEGE OF ME

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:BAYLOR COLLEGE OF ME

text: Escherichia coli K-12

characteristic: organism

text: Escherichia coli K-12

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

tag: Namespace:UNIVERSITY OF GLASGOW

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1001 day 50


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1002 day 35


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1011 day 50

characteristic: title


text: UNIVERSITY OF GLASGOW

text: public

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1011 day 80


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1012 day 21


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1012 day 28


text: UNIVERSITY OF GLASGOW

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1012 day 35

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1012 day 50


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1020 day 85


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1028 day 35


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1028 day 50

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1032 day 28


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1032 day 35


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1032 day 50


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1033 day 28

characteristic: title


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1033 day 50


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1036 day 50


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1036 day 80


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1040 day 50

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1041 day 35


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1041 day 80


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1047 day 21


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1047 day 80

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1048 day 50


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1065 day 50


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

characteristic: geographic location (country and/or sea)

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1069 day 35


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF GLASGOW

text: public

characteristic: Submitter Id

text: HANNOVER MEDICAL SCHOOL

characteristic: collecting institution

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

characteristic: organism

text: Human betaherpesvirus 5

text: 1069 day 50

characteristic: title


text: UNIVERSITY OF GLASGOW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

characteristic: collector name

text: Human cytomegalovirus

characteristic: common name

text: Germany

text: human

characteristic: host common name

text: transplant patient

characteristic: host health state

text: homo sapiens

text: Unspecified

text: plasma

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1074 day 35


characteristic: ENA-CHECKLIST

characteristic: External Id

text: UNIVERSITY OF GLASGOW

text: public

text: HANNOVER MEDICAL SCHOOL

text: Unspecified

text: Human cytomegalovirus

text: Germany

text: human

text: transplant patient

text: homo sapiens

characteristic: host scientific name

text: Unspecified

characteristic: host sex

characteristic: isolate

text: plasma

characteristic: isolation source host associated

text: Human betaherpesvirus 5

text: Human betaherpesvirus 5

text: 1074 day 50


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: BAYLOR COLLEGE OF ME

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Escherichia coli K-12

text: Escherichia coli K-12


characteristic: INSDC center name

text: public

tag: Namespace:San Raffaele Telethon Institute for Gene Therapy.

characteristic: Submitter Id

text: 6 to 12

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: bone marrow macrophage

characteristic: cell type

text: house mouse

text: Protocols: Bone marrow cells were collected from femurs and tibias in 50 mL PBS, filtered through a 70 µm cell strainer and centrifuged 450 x g for 5 minutes. Red blood cells were lysed using 0.2% NaCl solution, followed by 1.6% NaCl solution. Cells were filtered through a 70 µm cell strainer and centrifuged 450 x g for 5 minutes. 5 x 10^4 - 5 x 10^6 bone marrow cells were plated and cultured in Iscove’s Modified Dulbecco’s Medium (IMDM) supplemented with 10% Fetal Bovine Serum (FBS), 20% L929-conditioned medium containing M-CSF, antibiotics (penicillin G 100 U/ml and streptomycin sulfate 100 U/ml), 2 mM L-glutamine and 5 µM 2-mercaptoethanol. After six days of culture, adherent cells were >99% Cd11b+ F4/80+, as assessed by flow cytometry, and were stimulated as described. BMDMs or iMACs were stimulated for 2 hours at indicated condition 50,000 cells were collected and centrifuged at 450xg for 5 minutes. Then, the transposition reaction was performed using digitonin 1%, Tn5 transposase and TD Buffer for 45 minutes at 37°C. Immediately following transposition, the reaction was stopped using a solution of 900 mM NaCl and 300 mM EDTA, 5% SDS and Proteinase K for 30 minutes at 40°C. Transposed DNA fragments were purified using AMPure XP beads, barcoded with Illumina Nextera dual indexes and PCR amplified with KAPA HiFi PCR Kit. Then, the concentration of the library was determined using Qubit 3.0 and size distribution was assessed using Agilent 4200 TapeStation system.

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: MEF2A knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

characteristic: organism part

text: A

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

text: LPS

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: San Raffaele Telethon Institute for Gene Therapy.

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: 6 to 12

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: adult

text: normal

text: MEF2A knockout

text: Mus musculus

text: Mus musculus

text: bone marrow

text: A

text: Mus musculus

text: female

text: LPS


text: public

characteristic: Submitter Id

text: 6 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: MEF2A knockout

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: A

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 6 to 12

text: ArrayExpress

text: primary cell line

text: bone marrow macrophage

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: A

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

text: LPS

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: B

text: Mus musculus

text: female

text: LPS


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 6 to 12

text: ArrayExpress

text: primary cell line

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: C

text: Mus musculus

text: female

text: LPS


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6 to 12

text: ArrayExpress

text: bone marrow macrophage

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: A

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

text: LPS

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: A

text: Mus musculus

text: female


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6 to 12

text: ArrayExpress

text: primary cell line

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: B

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 6 to 12

text: ArrayExpress

text: primary cell line

text: bone marrow macrophage

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: C

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: stimulus

characteristic: strain

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

text: primary cell line

characteristic: cell line

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: A

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: 6 to 12

text: ArrayExpress

text: primary cell line

text: bone marrow macrophage

characteristic: cell type

text: house mouse

characteristic: description

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: bone marrow

text: B

text: Mus musculus

text: female


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 6 to 12

text: ArrayExpress

text: primary cell line

text: bone marrow macrophage

text: house mouse

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

characteristic: organism part

text: C

characteristic: replicate

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: 6 to 12

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: bone marrow macrophage

text: house mouse

characteristic: common name

text: adult

text: normal

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: bone marrow

text: A

text: Mus musculus

text: female


characteristic: External Id

text: NIOO-KNAW

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Bacteria

text: asparagus roots_control

characteristic: description

text: Yes

characteristic: environmental sample

text: 51.29N, 6.05E

characteristic: lat lon

text: soil metagenome

characteristic: organism

text: soil metagenome


text: NIOO-KNAW

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Bacteria

text: asparagus roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NIOO-KNAW

text: public

text: Bacteria

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Bacteria

text: asparagus roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: carrot roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: carrot roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: carrot roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: sugarbeet roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: sugarbeet roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: sugarbeet roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: onion roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: onion roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Bacteria

text: onion roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: asparagus roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: asparagus roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: asparagus roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: carrot roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: carrot roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: carrot roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: sugarbeet roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: sugarbeet roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: sugarbeet roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: onion roots_control

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: onion roots_winter_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: NIOO-KNAW

text: public

text: Fungi

text: onion roots_autumn_niger

text: Yes

text: 51.29N, 6.05E

text: soil metagenome

text: soil metagenome


text: WTCMP

text: public

text: Diminazine resistant clone 4C2 DNAseq

text: Trypanosoma congolense IL3000

text: Trypanosoma congolense IL3000

text: Diminazine resistant clone 4C2 DNAseq


text: WTCMP

text: public

text: Diminazine resistant clone 5C1 DNAseq

text: Trypanosoma congolense IL3000

text: Trypanosoma congolense IL3000

text: Diminazine resistant clone 5C1 DNAseq


text: WTCMP

text: public

text: Diminazine resistant clone 6C3 DNAseq

text: Trypanosoma congolense IL3000

text: Trypanosoma congolense IL3000

text: Diminazine resistant clone 6C3 DNAseq


text: WTCMP

text: public

text: Wild-type T. congolense IL3000 DNAseq

text: Trypanosoma congolense IL3000

text: Trypanosoma congolense IL3000

text: Wild-type T. congolense IL3000 DNAseq


text: NATIONAL CHENG KUNG UNIVERSITY

text: public

tag: Namespace:NATIONAL CHENG KUNG UNIVERSITY

characteristic: collection date

text: Human

characteristic: environment (biome)

text: Oral Metagenome

characteristic: environment (feature)

text: Saliva

characteristic: environment (material)

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

unit: year

characteristic: host age

text: Health

characteristic: host disease status

text: male

characteristic: host sex

text: human-oral

characteristic: human oral environmental package

text: metagenome

characteristic: investigation type

text: oral metagenome

text: Oral Cancer Microbiome

characteristic: project name

text: oral metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: human saliva


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL CHENG KUNG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Human

text: Oral Metagenome

text: Saliva

text: Taiwan

text: OVH

text: male

text: human-oral

text: metagenome

text: oral metagenome

characteristic: organism

text: Oral Cancer Microbiome

text: oral metagenome

text: Illumina MiSeq

text: human saliva

characteristic: title


text: NATIONAL CHENG KUNG UNIVERSITY

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Human

characteristic: environment (biome)

text: Oral Metagenome

characteristic: environment (feature)

text: Saliva

characteristic: environment (material)

text: Taiwan

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: OSCC

text: male

text: human-oral

text: metagenome

text: oral metagenome

text: Oral Cancer Microbiome

text: oral metagenome

text: Illumina MiSeq

text: human saliva


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text: CBMSO

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text: GENGS-CBMSO

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text: RNA samples from three biological replicates of Leishmania major Friedlin (26ºC incubation).

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text: Leishmania major strain Friedlin

text: Leishmania major strain Friedlin

text: RNAseq Raw reads obtained for 3 replicates of Leishmania major Friedlin (26ºC incubation)


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tag: Namespace:ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH

text: 76 bp long amplicon, part of rbcL gene

text: marine sediment

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unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 78.915662 N

text: 6.767167 E

text: eukaryote

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text: Diatom derived ancient DNA from marine sediments

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characteristic: environment (biome)

text: continental slope

characteristic: environment (feature)

text: marine sediment

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: 78.915662 N

characteristic: geographic location (latitude)

text: 6.767167 E

characteristic: geographic location (longitude)

text: eukaryote

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text: public

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text: marine sediment

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characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 53.99266 N

text: 162.37583 E

text: eukaryote

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text: Public Health Agency of Sweden

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characteristic: SRA accession

tag: Namespace:Public Health Agency of Sweden

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text: STEC New stx subtype

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text: not collected

characteristic: host health state

text: Human

characteristic: host scientific name

characteristic: isolate

text: Human

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text: Escherichia coli

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text: Escherichia coli

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