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characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

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text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


text: Robert Koch Institute

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characteristic: Sampling Strategy

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characteristic: Submitter Id

text: RKI-OSEDA

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characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

text: public

text: Random sampling

text: IMS-10061-CVDP-632A821B-79F5-48B0-8893-14C1157A4BAF

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

text: Human

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text: not provided

text: not provided


text: Robert Koch Institute

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text: Random sampling

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text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

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text: Homo sapiens

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characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

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characteristic: Submitter Id

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characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: Robert Koch Institute

characteristic: INSDC center name

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text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

text: Human

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text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

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text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

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text: Robert Koch Institute

characteristic: INSDC center name

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text: not provided

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text: Europe/Germany/Thuringia

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

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text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

text: Human

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text: RKI-OSEDA

text: not provided

text: Germany

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text: Human

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text: Homo sapiens

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text: not provided

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text: Uniklinikum Jena, Bachstr. 18; 07740 Jena

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characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: active surveillance in response to outbreak


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text: RKI-OSEDA

text: Thüringer Landesamtes für Verbraucherschutz, Tennstedter Straße 8/9; 99947 Bad Langensalza

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

text: Human

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text: not provided


characteristic: ENA-CHECKLIST

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text: Robert Koch Institute

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text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Thuringia

text: Human

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text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

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text: not provided

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text: Human

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text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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text: RKI-OSEDA

text: not provided

characteristic: collector name

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characteristic: Submitter Id

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text: not provided

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text: not provided

text: not provided


text: Robert Koch Institute

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text: RKI-OSEDA

text: not provided

characteristic: collector name

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text: Europe/Germany/Thuringia

characteristic: geographic location (region and locality)

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characteristic: ENA-CHECKLIST

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text: RKI-OSEDA

text: not provided

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text: Europe/Germany/Thuringia

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characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

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characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

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text: Human

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text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: RKI-OSEDA

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text: not provided

characteristic: collector name

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characteristic: geographic location (country and/or sea)

text: Europe/Germany/Thuringia

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text: Human

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text: not provided

text: not provided

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text: Suspect sampling

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text: RKI-OSEDA

text: Dianovis GmbH Greiz, Wichmannstraße 12; 07973 Greiz

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text: Human

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text: Homo sapiens

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text: not provided

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text: Human

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text: not provided

text: not provided

text: active surveillance in response to outbreak


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text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

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characteristic: geographic location (region and locality)

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text: not provided

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text: Human

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text: not provided

text: not provided


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: not provided


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text: not provided


characteristic: ENA-CHECKLIST

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text: RKI-OSEDA

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characteristic: collector name

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text: RKI-OSEDA

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characteristic: host sex

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characteristic: host subject id

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text: Human

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text: Homo sapiens

text: not provided

text: not provided

text: not provided


text: TEL AVIV UNIVERSITY

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tag: Namespace:TEL AVIV UNIVERSITY

text: ArrayExpress

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

characteristic: description

text: euploid

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: YPD plate supplemented with 4 g/ml tunicamycin

characteristic: growth condition

text: [Candida] auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

characteristic: strain

text: Parnt


E-MTAB-10626:Sample 11

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 11

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 11

characteristic: title


E-MTAB-10626:Sample 10

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10626:Sample 10

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 10


E-MTAB-10626:Sample 1

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10626:Sample 1

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 1


E-MTAB-10626:Sample 12

text: TEL AVIV UNIVERSITY

text: public

characteristic: INSDC status

text: E-MTAB-10626:Sample 12

text: ArrayExpress

characteristic: description

text: aneuploid

characteristic: developmental stage

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 12


E-MTAB-10626:Sample 13

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 13

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: [Candida] auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 13


E-MTAB-10626:Sample 14

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 14

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 14


E-MTAB-10626:Sample 15

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 15

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 15


E-MTAB-10626:Sample 16

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10626:Sample 16

characteristic: Submitter Id

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 16

characteristic: title


E-MTAB-10626:Sample 17

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10626:Sample 17

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 17


E-MTAB-10626:Sample 18

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10626:Sample 18

text: ArrayExpress

characteristic: description

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 18


E-MTAB-10626:Sample 19

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 19

text: ArrayExpress

text: aneuploid

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: growth condition

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 19


E-MTAB-10626:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 2

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 2


E-MTAB-10626:Sample 20

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 20

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 20


E-MTAB-10626:Sample 21

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10626:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 21


E-MTAB-10626:Sample 22

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10626:Sample 22

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 22

characteristic: title


E-MTAB-10626:Sample 23

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10626:Sample 23

text: ArrayExpress

characteristic: broker name

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 23


E-MTAB-10626:Sample 24

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 24

text: ArrayExpress

characteristic: description

text: aneuploid

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 24


E-MTAB-10626:Sample 25

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 25

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: growth condition

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 25


E-MTAB-10626:Sample 26

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 26

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 26


E-MTAB-10626:Sample 27

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10626:Sample 27

characteristic: Submitter Id

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 27


E-MTAB-10626:Sample 3

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10626:Sample 3

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 3


E-MTAB-10626:Sample 4

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10626:Sample 4

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 4

characteristic: title


E-MTAB-10626:Sample 5

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 5

text: ArrayExpress

characteristic: broker name

characteristic: description

text: aneuploid

characteristic: developmental stage

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 5


E-MTAB-10626:Sample 6

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 6

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 6


E-MTAB-10626:Sample 7

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10626:Sample 7

text: ArrayExpress

text: aneuploid

text: wild type genotype

characteristic: growth condition

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 7


E-MTAB-10626:Sample 8

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10626:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 8


E-MTAB-10626:Sample 9

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10626:Sample 9

text: ArrayExpress

text: aneuploid

text: wild type genotype

text: [Candida] auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 9


text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: wild type genotype

text: Candida auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Parent


E-MTAB-10542:Sample 1

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 1

text: ArrayExpress

characteristic: broker name

characteristic: description

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 1

characteristic: title


E-MTAB-10542:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 10

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 10


E-MTAB-10542:Sample 11

characteristic: ENA-LAST-UPDATE

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 11

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 11


E-MTAB-10542:Sample 12

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 12

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

characteristic: growth condition

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 12


E-MTAB-10542:Sample 13

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10542:Sample 13

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 13


E-MTAB-10542:Sample 14

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-10542:Sample 14

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 14


E-MTAB-10542:Sample 15

text: TEL AVIV UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-10542:Sample 15

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 15


E-MTAB-10542:Sample 16

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10542:Sample 16

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 16


E-MTAB-10542:Sample 17

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 17

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 17


E-MTAB-10542:Sample 18

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 18

text: ArrayExpress

characteristic: description

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 18

characteristic: title


E-MTAB-10542:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 19

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 19


E-MTAB-10542:Sample 2

characteristic: ENA-LAST-UPDATE

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 2

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 2


E-MTAB-10542:Sample 20

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 20

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

characteristic: growth condition

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 20


E-MTAB-10542:Sample 21

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10542:Sample 21

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 21


E-MTAB-10542:Sample 22

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-10542:Sample 22

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 22


E-MTAB-10542:Sample 23

text: TEL AVIV UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-10542:Sample 23

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 23


E-MTAB-10542:Sample 24

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10542:Sample 24

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 24


E-MTAB-10542:Sample 25

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 25

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 25


E-MTAB-10542:Sample 26

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 26

text: ArrayExpress

characteristic: description

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 26

characteristic: title


E-MTAB-10542:Sample 27

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 27

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 27


E-MTAB-10542:Sample 28

characteristic: ENA-LAST-UPDATE

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 28

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 28


E-MTAB-10542:Sample 29

characteristic: External Id

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 29

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

characteristic: growth condition

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 29


E-MTAB-10542:Sample 3

text: TEL AVIV UNIVERSITY

text: public

characteristic: SRA accession

text: E-MTAB-10542:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 3


E-MTAB-10542:Sample 30

text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

text: public

text: E-MTAB-10542:Sample 30

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

characteristic: organism part

text: [Candida] auris

text: Sample 30


E-MTAB-10542:Sample 4

text: TEL AVIV UNIVERSITY

characteristic: INSDC first public

text: public

text: E-MTAB-10542:Sample 4

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

characteristic: strain

text: Sample 4


E-MTAB-10542:Sample 5

text: TEL AVIV UNIVERSITY

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10542:Sample 5

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 5


E-MTAB-10542:Sample 6

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 6

text: ArrayExpress

characteristic: broker name

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

characteristic: organism

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 6


E-MTAB-10542:Sample 7

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 7

text: ArrayExpress

characteristic: description

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 7

characteristic: title


E-MTAB-10542:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 8

text: ArrayExpress

text: wild type genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 8


E-MTAB-10542:Sample 9

characteristic: ENA-LAST-UPDATE

text: TEL AVIV UNIVERSITY

text: public

text: E-MTAB-10542:Sample 9

text: ArrayExpress

text: wild type genotype

characteristic: genotype

text: YPD plate supplemented with 0.5% SDS

text: Candida auris

text: [Candida] auris

text: whole organism

text: [Candida] auris

text: Sample 9


E-MTAB-10568:Sample 1

characteristic: External Id

text: public

text: E-MTAB-10568:Sample 1

tag: Namespace:Department of Plant Sciences University of Cambridge

unit: week

characteristic: age

text: ArrayExpress

text: tomato

characteristic: common name

characteristic: cultivar

text: Protocols: 100mg leaf tissue were flash frozen in liquid Nitrogen. Plants were germinated and grown in F2 compost and transferred to 16h light and 8h dark at 22C day temperature and 18C night, 70% humidity Genomic DNA was isolated from 100mg leaf tissue using Dneasy Plant Mini Kit (Qiagen). Outsourced to Novogene. In brief: positive control DNAs were added into the DNA samples, and then they were fragmented into 200-400bp using Covaris S220. Next, teriminal repairing, A-ligation, methylation sequencing adapters ligation were performed to the DNA fragments. And the final DNA library was ready after Bisulfite treatment (Accel-NGS Methyl-Seq DNA Library Kit for illumina (Cat No. 30096) swift. This was followed by size selection and PCR amplification steps.

characteristic: epigenotype

characteristic: generation

text: wild type genotype

text: Solanum lycopersicum

text: Solanum lycopersicum

text: leaf

text: Solanum lycopersicum

text: Sample 1