text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: bladder urothelial carcinoma

text: urinary bladder cancer

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bladder

characteristic: organism part

text: bladder

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: bladder

text: No

characteristic: treatment naive

text: Grade:High

text: Not Specified

characteristic: tumor type


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:The Jackson Laboratory

unit: year

text: ArrayExpress

text: human

text: Protocols: PDX models were generated using subcutaneous tumor implantation in female NOD.Cg-Prkdc<scid> Il2rg<tm1Wjl>/SzJ (NSG; JAX strain 005557) host mice. Tumors were grown, collected, and fragmented for serial passage in NSG mice. Tumor samples at described passage numbers were taken for expression analysis. Tissues preserved in RNAlater were homogenized in TRIzol (ThermoFisher Scientific) using a gentleMACS dissociator (Miltenyi Biotec Inc). Total RNA was isolated using the miRNeasy Mini kit (Qiagen) according to manufacturer‚Äôs protocols, including the optional DNase digest step. RNA quality and concentration were assessed using the RNA 6000 Nano LabChip assay on the 2100 Bioanalyzer instrument and Nanodrop 2000 spectrophotometer (Thermo Scientific). Stranded libraries were prepared using the KAPA mRNA HyperPrep Kit (KAPA Biosystems), according to the manufacturer’s instructions. Briefly, the protocol entails isolation of polyA containing mRNA using oligo-dT magnetic beads, RNA fragmentation, first and second strand cDNA synthesis, ligation of Illumina-specific adapters containing a unique barcode sequence for each library, and PCR amplification. Libraries were checked for quality and concentration using the DNA 1000 assay (Agilent Technologies) and quantitative PCR (KAPA Biosystems), according to the manufacturers’ instructions.

characteristic: description

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

text: White

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: breast

characteristic: specimen site

characteristic: title

text: No

text: AJCC II

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: lung adenocarcinoma

text: non-small cell lung carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: lung

text: No

characteristic: treatment naive

text: IV

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: child

characteristic: developmental stage

text: pediatric ependymoma

text: pediatric ependymoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: spine

characteristic: passage number

text: spine

text: Not Reported

characteristic: race

text: Homo sapiens

text: child

characteristic: sex

text: spine

text: Autopsy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: breast

text: White

text: Homo sapiens

text: adult

text: breast

characteristic: specimen site

characteristic: title

text: Yes

text: AJCC IIIA

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: Ewing sarcoma

text: Ewing sarcoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: soft tissue

characteristic: organism part

characteristic: passage number

text: soft tissue

characteristic: primary site

text: Not Reported

text: Homo sapiens

text: liver

text: AJCC IV

text: Metastatic


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: micropapillary variant infiltrating bladder urothelial carcinoma

text: urinary bladder cancer

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: bladder

text: bladder

text: Black

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: bladder

text: No

characteristic: treatment naive

text: Grade:High

characteristic: tumor grade

text: pTNM

text: Recurrent/Relapse

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: breast

text: Black

text: Homo sapiens

text: adult

text: breast

characteristic: specimen site

characteristic: title

text: IIIA

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: primary site

text: Asian or Pacific Islander

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: breast

text: IIIC


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: child

text: alveolar rhabdomyosarcoma

text: alveolar rhabdomyosarcoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: soft tissue

characteristic: organism part

text: soft tissue

text: Not Reported

text: Homo sapiens

text: child

text: brain

text: Yes

characteristic: treatment naive

text: AJCC IV

text: Autopsy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: endometrial carcinoma

text: endometrial cancer

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: endometrium

characteristic: passage number

text: endometrium

text: Black

text: Homo sapiens

text: adult

text: uterus

characteristic: specimen site

characteristic: title

text: Yes

characteristic: tumor grade

text: AJCC IB

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: endometrial clear cell adenocarcinoma

text: endometrial cancer

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: endometrium

characteristic: organism part

text: endometrium

characteristic: primary site

text: Black

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: uterus

text: AJCC II

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: child

characteristic: developmental stage

text: bone osteosarcoma

text: bone osteosarcoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: bone

characteristic: passage number

text: bone

text: White

text: Homo sapiens

text: child

text: lung

characteristic: specimen site

characteristic: title

text: Grade:High

text: AJCC IV

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: lung adenocarcinoma

text: non-small cell lung carcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

text: Asian or Pacific Islander

text: Homo sapiens

text: adult

text: liver

text: Yes

characteristic: treatment naive

text: IV

characteristic: tumor stage

text: Metastatic


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: female reproductive endometrioid cancer

text: uterine cancer

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: uterus

characteristic: passage number

text: uterus

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: uterus

text: Yes

characteristic: tumor grade

text: AJCC II

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: female reproductive endometrioid cancer

text: endometrial cancer

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: endometrium

characteristic: organism part

text: endometrium

text: Asian or Pacific Islander

text: Homo sapiens

text: adult

text: uterus

characteristic: specimen site

characteristic: title

text: AJCC IB

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung small cell carcinoma

text: lung small cell carcinoma

text: cancer

text: Other

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: passage number

text: lung

characteristic: primary site

text: Other

characteristic: race

text: Homo sapiens

text: adult

text: breast

text: No

characteristic: treatment naive

text: AJCC IV

characteristic: tumor stage

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: breast

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: breast

characteristic: specimen site

text: Yes

characteristic: tumor grade

text: II

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: adult

text: chest wall

characteristic: title

text: No

text: IV

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: adenocarcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cecum

characteristic: organism part

text: cecum

text: Not Reported

text: Homo sapiens

text: adult

characteristic: sex

text: colon

text: Yes

characteristic: treatment naive

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: pancreatic ductal adenocarcinoma

text: pancreatic ductal adenocarcinoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: passage number

text: pancreas

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: adult

text: pancreas

characteristic: specimen site

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: adenosquamous lung carcinoma

text: adenosquamous lung carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

text: White

text: Homo sapiens

text: adult

text: lung

characteristic: title

characteristic: tumor grade

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: bladder transitional cell carcinoma

text: Carcinoma: Urothelial carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: bladder

characteristic: passage number

text: bladder

characteristic: primary site

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: bladder

text: No

characteristic: treatment naive

text: Grade:high

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: Not specified

text: brain glioblastoma multiforme

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: brain

text: Not Reported

characteristic: race

text: Homo sapiens

text: adult

text: brain

characteristic: specimen site

characteristic: title

text: Not Specified

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: brain glioblastoma multiforme

text: brain glioblastoma multiforme

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: passage number

text: brain

characteristic: primary site

text: Not Reported

text: Homo sapiens

text: adult

characteristic: sex

text: brain

text: Grade:IV

characteristic: tumor grade

text: Not Specified

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: breast metaplastic carcinoma

text: breast metaplastic carcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: breast

text: White

characteristic: race

text: Homo sapiens

text: adult

text: breast

text: Yes

characteristic: treatment naive

text: AJCC IV

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: primary site

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: breast

characteristic: specimen site

characteristic: title

text: No

text: AJCC IIB

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: breast

text: White

characteristic: race

text: Homo sapiens

text: adult

text: breast

text: Yes

characteristic: tumor grade

text: AJCC IA

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: primary site

text: Asian or Pacific Islander

text: Homo sapiens

text: adult

characteristic: sex

text: breast

text: No

characteristic: treatment naive

text: AJCC IIA

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00103_BR0869F014P0000P1003P2

text: ArrayExpress

text: human

characteristic: description

text: adult

text: invasive ductal carcinoma

text: invasive ductal carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

characteristic: organism part

text: breast

text: White

characteristic: race

text: Homo sapiens

text: adult

text: breast

characteristic: specimen site

characteristic: title

text: No

text: AJCC 1

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: invasive ductal carcinoma

text: breast carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: passage number

text: breast

characteristic: primary site

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: breast

text: No

characteristic: tumor grade

text: AJCC IV

text: Recurrent/Relapse

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00170_CN1572F2026P0000P1001P2

text: ArrayExpress

text: human

characteristic: description

text: adult

text: adenocarcinoma

text: adenocarcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

characteristic: organism part

text: colon

text: White

characteristic: race

text: Homo sapiens

text: adult

text: liver

text: No

characteristic: treatment naive

text: AJCC IV

characteristic: tumor stage

text: Metastatic


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: adenocarcinoma

text: adenocarcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: passage number

text: colon

characteristic: primary site

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: lung

characteristic: specimen site

characteristic: title

text: No

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00185_LG0476F211P0000P1001P2

text: ArrayExpress

text: human

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: lung squamous cell carcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

text: White

characteristic: race

text: Homo sapiens

text: adult

text: lung

text: Yes

text: AJCC III

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: lung squamous cell carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: passage number

text: lung

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: lung

text: Yes

characteristic: treatment naive

text: AJCC IIA

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: lung squamous cell carcinoma

text: lung squamous cell carcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: lung

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: lung

characteristic: specimen site

characteristic: title

text: Yes

characteristic: tumor grade

text: AJCC IA

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9204:TM00190_LG0542F5281P0000P1013P2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: lung adenocarcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

characteristic: passage number

text: lung

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: adult

text: lung

text: Yes

text: AJCC IIB

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: lung adenocarcinoma

text: lung adenocarcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: lung

text: White

text: Homo sapiens

text: adult

characteristic: sex

text: pleural cavity

characteristic: specimen site

text: No

characteristic: treatment naive

text: AJCC IV

characteristic: tumor stage

text: Metastatic


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: large cell neuroendocrine carcinoma

text: large cell neuroendocrine carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

characteristic: passage number

text: lung

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: lung

characteristic: title

text: Yes

characteristic: tumor grade

text: AJCC IIIB

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00214_LG1011PE1607P0000P1002P2

text: ArrayExpress

text: human

characteristic: description

text: adult

text: lung adenocarcinoma

text: lung adenocarcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: lung

text: Asian or Pacific Islander

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: lung

characteristic: specimen site

text: No

text: AJCC IIIB

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9204:TM00231_LG1197F385P0000P1011P2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: lung squamous cell carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: organism part

characteristic: passage number

text: lung

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: lung

text: Yes

characteristic: treatment naive

text: AJCC IB

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: adult

text: lung mixed small cell and squamous cell carcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

text: lung

text: White

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: lung

characteristic: title

text: Yes

characteristic: tumor grade

text: AJCC IV

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

characteristic: developmental stage

text: pancreatic ductal adenocarcinoma

text: pancreatic ductal adenocarcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: pancreas

characteristic: organism part

characteristic: passage number

text: pancreas

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: pancreas

characteristic: specimen site

text: Yes

text: AJCC IIIA

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00335_OV1828F082P0000P1012P2

text: ArrayExpress

text: human

characteristic: description

text: adult

text: papillary serous adenocarcinoma

text: papillary serous adenocarcinoma

text: cancer

characteristic: disease

text: Not Reported

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: ovary

text: ovary

text: Not Reported

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: ovary

text: Yes

characteristic: treatment naive

text: III

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: melanoma

text: melanoma

text: cancer

text: Not Reported

characteristic: ethnic group

text: Homo sapiens

text: Homo sapiens

text: skin

characteristic: organism part

characteristic: passage number

text: skin

characteristic: primary site

text: Not Reported

text: Homo sapiens

text: ovary

characteristic: title

text: Yes

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00355_LG0551F0552P0000P1000P2005P3

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: lung squamous cell carcinoma

text: lung squamous cell carcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: lung

text: lung

text: White

text: Homo sapiens

text: adult

text: lung

characteristic: specimen site

text: Yes

text: Not Specified

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: lung squamous cell carcinoma

text: lung squamous cell carcinoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: lung

text: White

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: lung

text: Yes

characteristic: treatment naive

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM00356_LG0552F574P0000P1027P2

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: lung adenocarcinoma

text: lung adenocarcinoma

text: cancer

characteristic: disease

text: Not Hispanic or Latino

text: Homo sapiens

text: Homo sapiens

text: lung

characteristic: passage number

text: lung

characteristic: primary site

text: American Indian or Alaskan Native

text: Homo sapiens

text: adult

text: soft tissue

characteristic: title

text: No

text: AJCC IV

text: Metastatic


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: diffuse large B-cell lymphoma

text: B-cell lymphoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lymph node

characteristic: organism part

text: lymph node

text: White

characteristic: race

text: Homo sapiens

text: adult

text: lymph node

characteristic: specimen site

text: Yes

text: AJCC IIIA

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: colon adenocarcinoma

text: colon adenocarcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

text: colon

text: Not Reported

text: Homo sapiens

text: adult

characteristic: sex

text: muscle

text: No

characteristic: treatment naive

text: AJCC IV

characteristic: tumor stage

text: Metastatic


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9204:TM00702_SK1260F017P0000P1012P2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: melanoma

text: melanoma

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: organism part

characteristic: passage number

text: skin

characteristic: primary site

text: White

text: Homo sapiens

text: adult

text: bone

characteristic: title

text: Yes

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adenocarcinoma

text: adenocarcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

text: colon

text: White

characteristic: race

text: Homo sapiens

text: adult

text: colon

characteristic: specimen site

text: No

characteristic: tumor grade

text: AJCC 1

text: Primary Malignancy

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adenocarcinoma

text: adenocarcinoma

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: rectum

characteristic: organism part

characteristic: passage number

text: rectum

text: Not Reported

text: Homo sapiens

text: liver

text: AJCC IV

characteristic: tumor stage

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: colon carcinoma

text: colon carcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

text: colon

characteristic: primary site

text: Not Reported

text: Homo sapiens

text: adult

characteristic: sex

text: colon

characteristic: title

text: AJCC IV

text: Not Specified


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: pancreatic adenocarcinoma

text: pancreatic adenocarcinoma

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pancreas

text: pancreas

text: White

characteristic: race

text: Homo sapiens

text: adult

text: pancreas

characteristic: specimen site

text: Yes

characteristic: treatment naive

characteristic: tumor grade

text: Not Specified

text: Primary Malignancy

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM01039_KD2232F106P0000P1017P2

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: renal cell carcinoma

text: renal cell carcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

characteristic: passage number

text: kidney

characteristic: primary site

text: Not Reported

text: Homo sapiens

text: adult

text: kidney

text: Yes

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: melanoma

text: melanoma

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

text: skin

text: Not Reported

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: colon

characteristic: specimen site

characteristic: title

text: AJCC IV

text: Metastatic


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: adenocarcinoma

text: adenocarcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: colon

text: Not Reported

text: Homo sapiens

text: adult

text: omentum

text: No

characteristic: treatment naive

characteristic: tumor grade

text: AJCC IV

text: Metastatic

characteristic: tumor type


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: melanoma

text: melanoma

text: cancer

text: Not Reported

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: passage number

text: skin

characteristic: primary site

text: Not Reported

characteristic: race

text: Homo sapiens

text: adult

characteristic: sex

text: chest wall

text: No

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: ampulla of Vater adenocarcinoma

text: pancreatic carcinoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: ampulla of vater

characteristic: organism part

text: ampulla of Vater

text: White

text: Homo sapiens

text: adult

text: pancreas

characteristic: specimen site

characteristic: title

text: Yes

characteristic: treatment naive

text: AJCC IIB

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: Ewing sarcoma

text: osteosarcoma

text: cancer

text: Hispanic

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: bone

characteristic: passage number

text: bone

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: adult

text: bone

text: Grade:High

characteristic: tumor grade

text: IV

text: Metastatic

characteristic: tumor type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: The Jackson Laboratory

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9204:TM01594_TM01594F006P0000P1011P2

characteristic: age

text: ArrayExpress

text: human

characteristic: description

text: child

characteristic: developmental stage

text: glioblastoma

text: glioblastoma

text: cancer

characteristic: disease

text: Not Reported

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: brain

text: Not Reported

text: Homo sapiens

text: child

characteristic: sex

text: brain

characteristic: specimen site

text: Yes

text: Not Specified

characteristic: tumor stage

text: Primary Malignancy


text: The Jackson Laboratory

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: adult

text: melanoma

text: melanoma

text: cancer

text: Not Hispanic or Latino

characteristic: ethnic group

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: skin

characteristic: passage number

text: skin

characteristic: primary site

text: White

characteristic: race

text: Homo sapiens

text: adult

text: lymph node

characteristic: title

text: No

characteristic: treatment naive

text: AJCC IV

text: Metastatic


name: E-MTAB-9207:HCT116 KRAS G13D CFIm25  knockdown replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Peter Gilgan Centre for Research and Leaning, The Hospital for Sick Children Department of Molecular Genetics, University of Toronto

text: ArrayExpress

characteristic: cell line

text: human

text: Protocols: HCT116 KRAS G13D, KRAS WT cells and DLD-1 cells were maintained in McCoy’s 5A medium supplemented with 10% FBS. Pancreatic BX PC3, CFPAC I and HPAF II cell lines were grown in DMEM supplemented with 10% FBS. Cell lines were validated by STR profiling. RNA from human cancer cells was extracted 48h post transfection using the RNeasy Kit from Qiagen according to the manufacturer’s instructions. For sequencing of human cancer cell samples, total RNA was treated with the DNA-free DNA Removal Kit (cat # AM1906; Thermo Fisher Scientific Inc., Waltham, USA) to remove contaminant DNA. DNase-treated total RNA was then quantified using Qubit RNA BR (cat # Q10211, Thermo Fisher Scientific Inc., Waltham, USA) fluorescent chemistry and 1 ng was used to obtain RNA Integrity Number (RIN) using the Bioanalyzer RNA 6000 Pico kit (cat # 5067-1513, Agilent Technologies Inc., Santa Clara, USA). Lowest RIN was 9.1; median RIN score was 9.8. 1000 ng per sample was then processed using the TruSeq Stranded mRNA Library Prep (cat # 20020595; Illumina Inc., San Diego, USA; protocol v. 1000000040498 v00) including PolyA selection, with 8 minutes of fragmentation at 94 °C and 15 cycles of amplification. 1uL top stock of each purified final library was run on an Agilent Bioanalyzer dsDNA High Sensitivity chip (cat # 5067-4626, Agilent Technologies Inc., Santa Clara, USA). The libraries were quantified using the NEBNext Library Quant Kit for Illumina (cat # E7630L, New England Biolabs, Ipswich, USA) and were pooled at equimolar ratios after size-adjustment. The final pool was run on an Agilent Bioanalyzer dsDNA High Sensitivity chip and quantified using the NEBNext Library Quant Kit.

characteristic: description

text: colon carcinoma

characteristic: disease

text: KRAS-G13D expression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

characteristic: replicate

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS G13D CFIm25  knockdown replicate 2

text: Peter Gilgan Centre for Research and Leaning, The Hospital for Sick Children Department of Molecular Genetics, University of Toronto

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colon carcinoma

text: KRAS-G13D expression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS G13D CFIm25  knockdown replicate 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: colon carcinoma

text: KRAS-G13D expression

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

characteristic: title


name: E-MTAB-9207:HCT116 KRAS WT CFIm25 knockdown replicate 1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: cell line

text: human

text: colon carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS WT CFIm25 knockdown replicate 2

text: public

text: ArrayExpress

text: human

characteristic: description

text: colon carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS WT CFIm25 knockdown replicate 3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: colon carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: replicate

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS G13D Control knockdown replicate 1

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colon carcinoma

text: KRAS-G13D expression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS G13D Control knockdown replicate 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: colon carcinoma

text: KRAS-G13D expression

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens

characteristic: title


name: E-MTAB-9207:HCT116 KRAS G13D Control knockdown replicate 3

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: cell line

text: human

text: colon carcinoma

text: KRAS-G13D expression

text: Homo sapiens

text: Homo sapiens

text: colon

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS WT Control knockdown replicate 1

text: public

text: ArrayExpress

text: human

characteristic: description

text: colon carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS WT Control knockdown replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: colon carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: replicate

text: Homo sapiens


name: E-MTAB-9207:HCT116 KRAS WT Control knockdown replicate 3

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: colon carcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

text: public

tag: Namespace:OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: collection date

text: marine metagenome

text: ocean

characteristic: environment (biome)

text: pelagic

characteristic: environment (feature)

text: sea water

characteristic: environment (material)

text: Southern Ocean

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: marine metagenome

text: Marine Ecosystem Biodiversity and Dynamics of Carbon around Kerguelen (MOBYDICK)

characteristic: project name

text: marine metagenome

text: Illumina HiSeq

characteristic: sequencing method

characteristic: title

text: water

characteristic: water environmental package


characteristic: External Id

text: OBSERVATOIRE OCEANOLOGIQUE DE BANYULS

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: marine metatranscriptome

characteristic: common name

text: ocean

text: pelagic

text: sea water

text: Southern Ocean

text: metatranscriptome

text: marine metagenome

characteristic: organism

text: marine metagenome

text: Illumina HiSeq

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: University of Southampton

text: public

tag: Namespace:University of Southampton

text: spike at 691bp and 1807bp

text: human

text: TB Patient

characteristic: description

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D0

characteristic: sample group

characteristic: sample id

text: T011 D0

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Doxy

characteristic: treatment group


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D0

text: T012 D0

text: Homo sapiens

characteristic: title

text: Placebo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: A D0

text: T022 D0

text: Homo sapiens

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

characteristic: description

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D14

characteristic: sample group

characteristic: sample id

text: T022 D14

text: Homo sapiens

text: Doxy


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D56

text: T022 D56

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Doxy

characteristic: treatment group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D0

text: T023 D0

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: A D56

text: T023 D56

text: Homo sapiens

text: Doxy


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D0

characteristic: sample group

characteristic: sample id

text: T024 D0

text: Homo sapiens

text: Doxy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D14

text: T024 D14

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Doxy

characteristic: treatment group


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D56

text: T024 D56

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: A D0

text: T027 D0

text: Homo sapiens

text: Doxy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D56

characteristic: sample group

characteristic: sample id

text: T011 D56

text: Homo sapiens

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D14

text: T012 D14

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D56

text: T012 D56

text: Homo sapiens

characteristic: title

text: Placebo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D0

text: T013 D0

text: Homo sapiens

text: Placebo


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: B D14

characteristic: sample group

characteristic: sample id

text: T013 D14

text: Homo sapiens

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D56

text: T013 D56

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D0

text: T014 D0

text: Homo sapiens

characteristic: title

text: Placebo


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D14

text: T014 D14

text: Homo sapiens

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: B D56

characteristic: sample group

characteristic: sample id

text: T014 D56

text: Homo sapiens

text: Placebo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D0

text: T015 D0

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Doxy

characteristic: treatment group


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D14

text: T015 D14

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: A D56

text: T015 D56

text: Homo sapiens

text: Doxy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D0

characteristic: sample group

characteristic: sample id

text: T016 D0

text: Homo sapiens

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D14

text: T016 D14

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Doxy

characteristic: treatment group


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D56

text: T016 D56

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D0

text: T017 D0

text: Homo sapiens

text: Placebo


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: B D14

characteristic: sample group

characteristic: sample id

text: T017 D14

text: Homo sapiens

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D56

text: T017 D56

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D0

text: T018 D0

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: A D14

text: T018 D14

text: Homo sapiens

text: Doxy


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D56

characteristic: sample group

characteristic: sample id

text: T018 D56

text: Homo sapiens

text: Doxy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D0

text: T019 D0

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D14

text: T019 D14

text: Homo sapiens

characteristic: title

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D56

text: T019 D56

text: Homo sapiens

text: Placebo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: A D0

characteristic: sample group

characteristic: sample id

text: T020 D0

text: Homo sapiens

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D14

text: T020 D14

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Doxy

characteristic: treatment group


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D56

text: T020 D56

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D0

text: T021 D0

text: Homo sapiens

text: Placebo


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: B D14

characteristic: sample group

characteristic: sample id

text: T021 D14

text: Homo sapiens

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D56

text: T021 D56

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: A

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: A D14

text: T023 D14

text: Homo sapiens

characteristic: title

text: Doxy


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D0

text: T025 D0

text: Homo sapiens

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: B D14

characteristic: sample group

characteristic: sample id

text: T025 D14

text: Homo sapiens

text: Placebo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D56

text: T025 D56

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D0

text: T026 D0

text: Homo sapiens

characteristic: title

text: Placebo


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: TB Patient

characteristic: description

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: B D14

text: T026 D14

text: Homo sapiens

text: Placebo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: B D56

characteristic: sample group

characteristic: sample id

text: T026 D56

text: Homo sapiens

text: Placebo


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: TB Patient

text: B

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: B D0

text: N003 D0

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Placebo

characteristic: treatment group


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp, Low profile

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D0

text: HV01 D0

text: Homo sapiens

characteristic: title

text: Healthy volunteer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: Healthy control

characteristic: description

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: C D14

text: HV01 D14

text: Homo sapiens

text: Healthy volunteer


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: C D56

characteristic: sample group

characteristic: sample id

text: HV01 D56

text: Homo sapiens

text: Healthy volunteer


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp, Low profile

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D0

text: HV02 D0

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Healthy volunteer

characteristic: treatment group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D14

text: HV02 D14

text: Homo sapiens

characteristic: title

text: Healthy volunteer


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp, Low profile

text: human

characteristic: common name

text: Healthy control

characteristic: description

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: C D56

text: HV02 D56

text: Homo sapiens

text: Healthy volunteer


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: C D14

characteristic: sample group

characteristic: sample id

text: HV05 D14

text: Homo sapiens

text: Healthy volunteer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D56

text: HV05 D56

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Healthy volunteer

characteristic: treatment group


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp, Low profile

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D14

text: HV07 D14

text: Homo sapiens

characteristic: title

text: Healthy volunteer


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp, Low profile

text: human

characteristic: common name

text: Healthy control

characteristic: description

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: C D56

text: HV07 D56

text: Homo sapiens

text: Healthy volunteer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: C D0

characteristic: sample group

characteristic: sample id

text: HV08 D0

text: Homo sapiens

text: Healthy volunteer


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D14

text: HV08 D14

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Healthy volunteer

characteristic: treatment group


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp, Low profile

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D0

text: HV09 D0

text: Homo sapiens

characteristic: title

text: Healthy volunteer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp, Low profile

text: human

characteristic: common name

text: Healthy control

characteristic: description

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: C D14

text: HV09 D14

text: Homo sapiens

text: Healthy volunteer


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

text: spike at 691bp and 1807bp, Low profile

text: human

text: Healthy control

text: C

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: C D56

characteristic: sample group

characteristic: sample id

text: HV09 D56

text: Homo sapiens

text: Healthy volunteer


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp, Low profile

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D0

text: HV10 D0

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Healthy volunteer

characteristic: treatment group


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D14

text: HV10 D14

text: Homo sapiens

characteristic: title

text: Healthy volunteer


characteristic: ENA-LAST-UPDATE

text: University of Southampton

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: spike at 691bp and 1807bp

text: human

characteristic: common name

text: Healthy control

characteristic: description

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

characteristic: organism

text: C D56

text: HV10 D56

text: Homo sapiens

text: Healthy volunteer


characteristic: External Id

text: University of Southampton

characteristic: INSDC center name

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

characteristic: group

text: Smart Seq -Nextera XT v2

characteristic: kit

text: Homo sapiens

text: C D0

characteristic: sample group

characteristic: sample id

text: HV05 D0 (2)

text: Homo sapiens

text: Healthy volunteer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Southampton

text: public

text: spike at 691bp and 1807bp

text: human

text: Healthy control

text: C

text: Smart Seq -Nextera XT v2

text: Homo sapiens

text: C D0

text: HV07 D0 (2)

characteristic: sample name

text: Homo sapiens

characteristic: subject

characteristic: timepoint

text: Healthy volunteer

characteristic: treatment group


text: Salmonella enterica subsp. enterica serovar Typhimurium

characteristic: ArrayExpress-SPECIES

characteristic: ENA-LAST-UPDATE

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: subject id

characteristic: title


characteristic: External Id

text: COLUMBIA UNIVERSITY

characteristic: INSDC center name

text: public

tag: Namespace:COLUMBIA UNIVERSITY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples were harvested during mid-log growth phase Nucleic acid samples were prepped using beadbeating followed by phenol-chloroform extraction and ethanol precipitation DNA samples were prepped through a two step PCR method to enrich for amplicons of interest. RNA samples were prepped by gene-specific RT and adapter ligation. Subsequently, two step qPCR was performed to add select for sequences of interest and append Illumina adapter sequences

characteristic: description

text: WT

characteristic: genetic modification

text: Streptomyces albidoflavus

characteristic: organism

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: COLUMBIA UNIVERSITY

text: public

text: ArrayExpress

text: IndYR

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus


text: COLUMBIA UNIVERSITY

text: public

text: ArrayExpress

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus


text: COLUMBIA UNIVERSITY

text: public

text: ArrayExpress

text: bldA

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus


text: COLUMBIA UNIVERSITY

text: public

text: ArrayExpress

text: bldB

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus


text: COLUMBIA UNIVERSITY

text: public

text: ArrayExpress

text: frr

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus

text: Streptomyces albidoflavus


text: JIC

text: public

text: thale cress

characteristic: common name

text: Arabidopsis thaliana

text: Arabidopsis thaliana


characteristic: ENA-LAST-UPDATE

text: UCSDMI

text: public

characteristic: anonymized name

text: C

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 012516.APC11

text: DMSO

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: APC mutant

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: C

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 012516.APC12

characteristic: description

text: DMSO

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

text: APC mutant

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: A

text: not collected

text: not collected

text: mouse gut sample 012516.APC2

text: TCS

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: APC mutant

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: A

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 012516.APC3

characteristic: description

text: TCS

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

text: APC mutant

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: B

text: not collected

text: not collected

text: mouse gut sample 012516.APC4

text: TCS

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

text: APC mutant

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: anonymized name

text: E

characteristic: cage id

text: not collected

characteristic: collection method

text: not collected

text: mouse gut sample 012816.T3

characteristic: description

text: TCS

characteristic: diet

text: TRUE

characteristic: dob

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: Mus musculus

text: not collected

text: days

text: g

text: not collected

text: not collected

text: Decimal degrees

text: adult

text: Decimal degrees

text: mouse gut metagenome

characteristic: organism

text: UCSDMI

text: TRUE

text: stool

text: mouse gut metagenome

text: male

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not collected

text: not collected

text: mouse gut sample 079TCS1

text: TCS + HFD (STZ)

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: Mus musculus

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

text: not collected

characteristic: host weight

text: days

text: g

text: not collected

text: not collected

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: life stage

characteristic: longitude

text: Decimal degrees

text: mouse gut metagenome

text: UCSDMI

text: TRUE

text: stool

characteristic: sample type

text: mouse gut metagenome

text: male

characteristic: sex

characteristic: strain