E-MTAB-9679:SL1344 3 hour (4)

text: public

text: E-MTAB-9679:SL1344 3 hour (4)

text: ArrayExpress

characteristic: description

text: wild type genotype

text: whole organism

text: SL1344 3 hour (4)


E-MTAB-9679:SL1344 5 hour (1)

status: PUBLIC

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text: E-MTAB-9679:SL1344 5 hour (1)

tag: Namespace:Institute of Microbiology and Infection, College of Medical and Dental Sciences, University of Birmingham

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Protocols: 4 biological replicates of each strain were grown for 5 hours. At 1 hour of growth, 6 mL of culture (for each replicate) was centrifuged and cells were harvested and snap frozen. At 3 hours and 5 hours of growth, 1 mL of culture for each replicate was centrifuged and harvested, with snap freezing of the pellets. All centrifugation steps were at 3500 x g and samples were stored at -80°C. Strains were grown in MOPs minimal media (supplemented with histidine) for 5 hours at 37°C with shaking at 150 RPM. Strains were grown from a 4% inoculum of an overnight culture. GENEWIZ Inc. carried out the RNA extraction. Total RNA was extracted from cell pellets using RNeasy Plus Universal kit (Qiagen).To remove rRNA, the ribozero Removal Kit was used (Illumina).RNA quality control was carried out using Qubit 2.0 Fluorometer to measure total RNA concentration and Agilent TapeStation. Library construction was done by GENEWIZ Inc. The NEBNext Ultra II RNA Library Prep Kit (Illumina) was used for library preparation, following the manufacturer’s protocol. For library preparation, cDNA was synthesised, end repaired and adenylated at the 3’ ends. Universal adapters were ligated to cDNA and library enrichment was carried out using limited cycle PCR.

text: wild type genotype

characteristic: genotype

text: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

characteristic: organism

text: whole organism

characteristic: organism part

characteristic: strain

text: SL1344 5 hour (1)

characteristic: title


E-MTAB-9679:SL1344 5 hour (2)

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text: public

text: E-MTAB-9679:SL1344 5 hour (2)

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text: wild type genotype

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text: SL1344 5 hour (2)


E-MTAB-9679:SL1344 5 hour (3)

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text: E-MTAB-9679:SL1344 5 hour (3)

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text: SL1344 5 hour (3)


E-MTAB-9679:SL1344 5 hour (4)

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text: public

text: E-MTAB-9679:SL1344 5 hour (4)

text: ArrayExpress

text: wild type genotype

text: whole organism

text: SL1344 5 hour (4)


E-MTAB-9679:acrB 1 hour (1)

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text: E-MTAB-9679:acrB 1 hour (1)

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text: acrB 1 hour (1)


E-MTAB-9679:acrB 1 hour (2)

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E-MTAB-9679:acrB 1 hour (3)

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text: E-MTAB-9679:acrB 1 hour (3)

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text: acrB 1 hour (3)


E-MTAB-9679:acrB 1 hour (4)

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text: E-MTAB-9679:acrB 1 hour (4)

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text: acrB 1 hour (4)


E-MTAB-9679:acrB 3 hour (1)

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text: E-MTAB-9679:acrB 3 hour (1)

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E-MTAB-9679:acrB 3 hour (2)

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characteristic: INSDC status

text: E-MTAB-9679:acrB 3 hour (2)

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E-MTAB-9679:acrB 3 hour (3)

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characteristic: SRA accession

text: E-MTAB-9679:acrB 3 hour (3)

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E-MTAB-9679:acrB 3 hour (4)

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characteristic: Submitter Id

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E-MTAB-9679:acrB 5 hour (1)

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E-MTAB-9679:acrB 5 hour (2)

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E-MTAB-9679:acrB 5 hour (3)

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E-MTAB-9679:acrB 5 hour (4)

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characteristic: organism part

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text: DTU-GE

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text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Thailand

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

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text: DTU-GE

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text: Yes

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text: No

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text: DTU-GE

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text: Global sewage consortium

text: Yes

text: Sweden

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: wastewater

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text: wastewater metagenome


text: DTU-GE

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text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Austria

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Portugal

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Cambodia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Croatia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Greece

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Nicaragua

text: No

characteristic: isolate

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Switzerland

text: No

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Australia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Belgium

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Belgium

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: France

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Montenegro

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Czech Republic

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Guatemala

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: South Africa

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Bosnia and Herzegovina

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Tanzania

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Benin

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: South Korea

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Cote d'Ivoire

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Saudi Arabia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Slovenia

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Spain

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Slovakia

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Greece

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Hong Kong

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Uganda

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Iceland

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Norway

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Malaysia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Albania

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Germany

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Hungary

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Chad

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Greenland

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Taiwan

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: India

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: United Kingdom

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Japan

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


text: DTU-GE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: India

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Thailand

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Barbados

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Paraguay

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Pakistan

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Ireland

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Canada

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Italy

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Poland

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Nigeria

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Mauritius

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Belgium

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Estonia

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Sweden

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Iran

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Luxembourg

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Portugal

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: South Korea

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Burkina Faso

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Colombia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Botswana

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Malawi

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Togo

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Bangladesh

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Kuwait

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Nepal

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: USA

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Ghana

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Cameroon

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: United Kingdom

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Uruguay

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Chile

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Morocco

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Israel

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Canada

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Finland

characteristic: geographic location (country and/or sea)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: United Arab Emirates

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: New Zealand

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Malaysia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Malaysia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Tanzania

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Philippines

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Argentina

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Saint Lucia

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Ethiopia

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Nigeria

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Ecuador

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Mozambique

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Iran

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Senegal

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Denmark

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: China

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

text: Viet Nam

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

characteristic: environmental sample

text: Serbia

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Netherlands

text: No

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Singapore

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Sweden

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Sweden

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Greece

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Cambodia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Spain

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Belgium

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Czech Republic

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Germany

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Malaysia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: France

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Saudi Arabia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Austria

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Bosnia and Herzegovina

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Burkina Faso

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Portugal

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Togo

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Hungary

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Italy

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Slovenia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Turkey

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Croatia

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: South Korea

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Tanzania

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Japan

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: United Kingdom

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Canada

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Pakistan

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Serbia

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Botswana

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Bulgaria

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: Netherlands

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Montenegro

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Mauritius

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Greece

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: Submitter Id

text: DTU-GE

characteristic: broker name

text: Global sewage consortium

text: Yes

text: Portugal

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

characteristic: INSDC last update

text: public

text: DTU-GE

text: Global sewage consortium

characteristic: collected by

characteristic: collection date

text: Yes

characteristic: environmental sample

text: India

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Slovakia

characteristic: geographic location (country and/or sea)

text: No

characteristic: is the sequenced pathogen host associated?

characteristic: isolate

text: wastewater

characteristic: isolation source non-host-associated

text: wastewater metagenome

text: wastewater metagenome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: DTU-GE

text: public

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Poland

text: No

text: wastewater

text: wastewater metagenome

characteristic: organism

text: wastewater metagenome

characteristic: strain


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: DTU-GE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: DTU-GE

text: Global sewage consortium

text: Yes

text: Taiwan

text: No

text: wastewater

text: wastewater metagenome

text: wastewater metagenome


text: DTU-GE

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text: Paramecium sexaurelia

text: Paramecium sexaurelia


text: GSC

text: public

text: Paramecium sonneborni

text: Paramecium sonneborni


text: GSC

text: public

text: Paramecium tetraurelia

text: Paramecium tetraurelia


text: GSC

text: public

text: Paramecium tredecaurelia

text: Paramecium tredecaurelia


text: Pomeranian University in Slupsk

text: public

tag: Namespace:Pomeranian University in Slupsk

text: Samples: T1-T7, B1-B7; (14 samples, T - top layer of dune sand, B - bottom layer, 1-7 - sampling days). Controls: Kitc - kit control, NTC - negative PCR control (2 controls) Both strands of DNA were sequenced. Altogether (14+2)*2=32 data files. Primers used during PCR: 515FB and 806RB Sequencing methods: Illumina MiSeq technique

text: Coastal sand dune, the southern Baltic Sea, Poland; coordinates: 54.7210 N, 17.2187 E

characteristic: geographic location (region and locality)

text: metagenome

text: metagenome

text: Hydrated dune sand - samples collected during consecutive days of incubation


E-MTAB-9693:FaDu -IR1

text: German Cancer Research Center

text: public

text: E-MTAB-9693:FaDu -IR1

tag: Namespace:German Cancer Research Center

text: ArrayExpress

characteristic: broker name

text: FaDu

characteristic: cell line

text: human

text: Protocols: Cells suspensions for RNA extraction was obtained from exponentially growing cultures by mild enzymatic detachment using a 0.05% trypsin / 0.02% EDTA solution in phosphate buffered saline (PBS, PAN Biotech): FaDu (ATCC® HTB-43™) was cultured in Minimum Essential Medium (MEM, Gibco™/Life Technologies) with 10% Fetal Bovine Serum (FBS, Sigma-Aldrich) and 1% Penicillin and Streptomycin (10,000U/mL / 10mg/mL; Gibco™/Life Technologies). Patient-derived cell lines were cultured in Dulbeccos´s Modified Eagle Medium (DMEM, Biochrom) with 10% FBS and 1% Penicillin and Streptomycin. Cells were cultured at 37°C in a humidified environment and 5% CO2 atmosphere. Cultures were regularly tested to be free from mycoplasma using Venor®GeM Classic Kit (Minerva Biolabs). Cells were passaged by reaching 90% confluency using Trypsin/EDTA. Total RNA was extracted using Quiagen AllPrep DNA/RNA Mini Kit according to manufacturer’s protocol. In brief, 5x106 cells were disrupted by adding 600 µl buffer RLT Plus and subsequent vortexing. For homogenization, the lysate was passed 5 times through a 20-gauge needle fitted to an RNase-free syringe. The lysate was transferred to an AllPrep DNA spin column and centrifuged. The gDNA bound column was stored at 4°C for later DNA purification. For RNA extraction 600µl 70% ethanol was added to the RNA-containing flow-through and transferred to an RNeasy spin column. After washing, total RNA was eluted from the column membrane by adding 50µl nuclease-free water. RNA concentrations were determined using Nanodrop spectrophotometer and RNA was stored at -80°C. RNA sequencing was performed on FaDu, HNO407 and HNO206 (3 biological replicates). 1.2µg high purity total RNA (defined as having an RNA integrity number (RIN) greater than 8.0) was used as input for RNA seq library construction. Library preparation for RNA-seq was performed using the Illumina TruSeq® Stranded mRNA Library Preparation Kit, following manufactures recommended standard protocols.

text: adult

characteristic: developmental stage

text: squamous cell carcinoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: pharynx

characteristic: organism part

text: Homo sapiens

text: FaDu -IR1


E-MTAB-9693:FaDu -IR2

characteristic: ENA-CHECKLIST

text: German Cancer Research Center

characteristic: INSDC first public

text: public

text: E-MTAB-9693:FaDu -IR2

text: ArrayExpress

text: FaDu

text: human

characteristic: common name

characteristic: description

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: pharynx

text: Homo sapiens

text: FaDu -IR2

characteristic: title


E-MTAB-9693:FaDu -IR3

characteristic: ENA-FIRST-PUBLIC

text: German Cancer Research Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9693:FaDu -IR3

text: ArrayExpress

text: FaDu

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: pharynx

text: Homo sapiens

text: FaDu -IR3


E-MTAB-9693:HNO206 -IR1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: German Cancer Research Center

characteristic: INSDC center name

text: public

text: E-MTAB-9693:HNO206 -IR1

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: oropharynx

text: Homo sapiens

text: HNO206 -IR1


E-MTAB-9693:HNO206 -IR2

text: German Cancer Research Center

text: public

text: E-MTAB-9693:HNO206 -IR2

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: adult

characteristic: developmental stage

text: squamous cell carcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: oropharynx

text: Homo sapiens

text: HNO206 -IR2


E-MTAB-9693:HNO206 -IR3

characteristic: ENA-CHECKLIST

text: German Cancer Research Center

characteristic: INSDC first public

text: public

text: E-MTAB-9693:HNO206 -IR3

text: ArrayExpress

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: oropharynx

characteristic: organism part

text: Homo sapiens

text: HNO206 -IR3


E-MTAB-9693:HNO407 -IR1

characteristic: ENA-FIRST-PUBLIC

text: German Cancer Research Center

text: public

text: E-MTAB-9693:HNO407 -IR1

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: oropharynx

text: Homo sapiens

text: HNO407 -IR1

characteristic: title


E-MTAB-9693:HNO407 -IR2

text: German Cancer Research Center

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9693:HNO407 -IR2

text: ArrayExpress

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: oropharynx

text: Homo sapiens

text: HNO407 -IR2


E-MTAB-9693:HNO407 -IR3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: German Cancer Research Center

characteristic: INSDC center name

text: public

text: E-MTAB-9693:HNO407 -IR3

characteristic: Submitter Id

text: ArrayExpress

text: human

text: adult

text: squamous cell carcinoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: oropharynx

text: Homo sapiens

text: HNO407 -IR3


text: UNIVERSITY OF OSLO

text: public

tag: Namespace:UNIVERSITY OF OSLO

characteristic: collection date

text: Atlantic puffin

text: Blood sample of Atlantic puffin (Fratercula arctica) for genome sequencing and assembly

text: Norway

characteristic: geographic location (country and/or sea)

text: Hernyken, Røst

characteristic: geographic location (region and locality)

text: 67°25’33’’N 11°52’50’’E

characteristic: lat lon

text: Fratercula arctica

text: Fratercula arctica

text: Female

characteristic: sex

text: MA28445, Zool. Museum Oslo

characteristic: specimen voucher

text: arctica

characteristic: sub species

text: Blood

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC first public

text: public

tag: Namespace:GFZ German Research Centre for Geosciences

characteristic: common name

text: DNA extract from soil samples treated by temperature gradients

characteristic: description

text: frozen soil biome

characteristic: environment (biome)

text: permafrost

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Svalbard, Knudsenheia

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: Shift of microbial communities in response to increasing temperature

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: mcrA

characteristic: target gene

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: GFZ German Research Centre for Geosciences

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: frozen soil biome

text: permafrost

text: soil

text: Norway

characteristic: geographic location (country and/or sea)

text: Svalbard, Knudsenheia

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: mcrA


characteristic: INSDC first public

text: public

characteristic: common name

text: Permafrost-affected soil samples from Svalbard, Knudsenheia and treated by temperature gradients

characteristic: description

text: frozen soil biome

characteristic: environment (biome)

text: permafrost

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Svalbard, Knudsenheia

text: mimarks-survey

characteristic: investigation type

text: metagenome

text: Shift of microbial communities in permafrost-affected soils in response to temperature gradients

characteristic: project name

text: metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina MiSeq v3 2x300

text: mcrA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Permafrost-affected soil samples and treated by temperature gradients

text: frozen soil biome

text: permafrost

text: soil

text: Norway

text: Svalbard, Knudsenheia

text: mimarks-survey

text: metagenome

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

characteristic: sequencing method

text: mcrA

characteristic: target gene

characteristic: title


characteristic: INSDC first public

text: public

characteristic: common name

characteristic: description

text: frozen soil biome

characteristic: environment (biome)

text: permafrost

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Svalbard, Knudsenheia

characteristic: geographic location (region and locality)

text: mimarks-survey

text: metagenome

characteristic: organism

text: metagenome

text: sediment

text: Illumina MiSeq v3 2x300

text: 16S rRNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: universita degli studi di verona

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:universita degli studi di verona

characteristic: Submitter Id

characteristic: collection date

text: Denmark

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: CF sputum

characteristic: isolation source

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa CF DK 1


text: universita degli studi di verona

characteristic: INSDC first public

text: public

text: Denmark

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: CF sputum

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa CF DK 2

characteristic: title


characteristic: ENA-CHECKLIST

text: universita degli studi di verona

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: CF sputum

text: Pseudomonas aeruginosa

characteristic: organism

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa CF DK 3


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: universita degli studi di verona

text: public

text: Denmark

text: diseased

text: Homo sapiens

text: CF sputum

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa CF DK 4


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Instituto Nacional de Enfermedades Infecciosas (INEI) - ANLIS - Dr. Carlos G. Malbran

text: Argentina

text: Homo sapiens

text: Strain

text: Urethral

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

text: Genomic analysis of Neisseria gonorrhoeae strains non-susceptible to azithromycin in Argentina


text: Instituto Nacional de Enfermedades Infecciosas (INEI) - ANLIS - Dr. Carlos G. Malbran

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Argentina

text: Homo sapiens

text: Strain

text: Urethral

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Argentina

text: Homo sapiens

text: Strain

text: Urine

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: public

characteristic: collection date

text: Argentina

text: Homo sapiens

text: Strain

text: Vaginal

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: public

text: Argentina

text: Homo sapiens

characteristic: host scientific name

text: Strain

text: Cervical

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: public

text: Argentina

text: Homo sapiens

text: Strain

characteristic: isolate

text: Pharyngeal

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: public

text: Argentina

text: Homo sapiens

text: Strain

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae


text: Marine Biological Association

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: CHRIS WOOD

characteristic: collected by

text: Marine Biological Association

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plymouth | King Point Marina

characteristic: geographic location (region and locality)

text: NOT PROVIDED

characteristic: habitat

text: JOHN BISHOP

characteristic: identified by

text: MARINE BIOLOGICAL ASSOCIATION

text: adult

characteristic: lifestage

text: Watersipora subatra

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Watersipora subatra

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: CHRIS WOOD

text: Marine Biological Association

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Plymouth | King Point Marina

text: NOT PROVIDED

text: JOHN BISHOP

text: MARINE BIOLOGICAL ASSOCIATION

text: adult

text: Watersipora subatra

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Watersipora subatra

text: HERMAPHRODITE MONOECIOUS

text: NOT COLLECTED

characteristic: title


text: Marine Biological Association

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: HANNAH PARRY-WILSON

characteristic: collected by

text: Marine Biological Association

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Devon | Torbay | Corbyn Head

characteristic: geographic location (region and locality)

text: NOT PROVIDED

characteristic: habitat

text: HANNAH PARRY-WILSON

characteristic: identified by

text: MARINE BIOLOGICAL ASSOCIATION

text: adult

characteristic: lifestage

text: Steromphala umbilicalis

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Steromphala umbilicalis

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Marine Biological Association

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: VENGAMANAIDU MODEPALLI

text: Marine Biological Association

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Devon | Plymouth | Hoe Foreshore East of Lido

text: NOT PROVIDED

text: VENGAMANAIDU MODEPALLI

text: MARINE BIOLOGICAL ASSOCIATION

text: adult

text: Actinia equina

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Actinia equina

text: NOT COLLECTED

text: NOT COLLECTED

characteristic: tolid


text: Marine Biological Association

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: MICHAEL CUNLIFFE

characteristic: collected by

text: Marine Biological Association

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (depth)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Devon | Wembury | Church Reef

characteristic: geographic location (region and locality)

text: NOT PROVIDED

characteristic: habitat

text: RO ALLEN

characteristic: identified by

text: MARINE BIOLOGICAL ASSOCIATION

text: not provided

characteristic: lifestage

text: Metschnikowia zobellii

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Metschnikowia zobellii

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Quadram Institute Bioscience

characteristic: Submitter Id

text: Quadram Institute Bioscience

characteristic: collection date

text: mouse gut metagenome

characteristic: common name

text: caecal DNA from vehicle treated control biological repeat 1 (VNMAA experiment)

characteristic: description

text: Mouse microbiome

characteristic: environment (biome)

text: Caecum

characteristic: environment (feature)

text: Feces

characteristic: environment (material)

text: Water

characteristic: experimental factor

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Stool

characteristic: host body product

text: Caecum

characteristic: host body site

characteristic: host common name

text: female

characteristic: host sex

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

characteristic: organism

unit: g

characteristic: sample volume or weight for DNA extraction

text: mouse gut metagenome

text: Illumina Nextseq500

characteristic: sequencing method