E-MTAB-10609:1_myc.SOX18 _tr1

characteristic: ENA-CHECKLIST

text: IMBUQ

text: public

text: E-MTAB-10609:1_myc.SOX18 _tr1

text: ArrayExpress

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Hela cells were seeded in 3×15 cm dishes per condition at 2.65×106 cells/dish, and then transfected for 24 h with the following combination of plasmids: (1) 15 μg pcDNA3.1 glomyc-mSOX18 and 15 μg untagged mSOX18; (2) 15 μg pcDNA myc-RaOP and 15 μg untagged RaOP; (3) 15 μg pcDNA3.1 glomyc-mSOX18 and 15 μg untagged RaOP. Transfections were performed using the X-tremeGENE 9 Transfection Reagent kit (Roche) as per manufacturer’s instructions, with a DNA to X-tremeGENE 9 ratio of 1 μg to 3 μL.Cells were then fixed in molecular biology grade formaldehyde solution in their existing media to a final concentration of 11% formaldehyde, 0.1 M NaCl, 1 mM EDTA, 50 mM HEPES for 15 min at room temperature with agitation. Fixing was quenched by adding a glycine solution to a final concentration of 2.5 M for 5 min at room temperature. Cells were then scraped and pelleted at 800 g for 10 min at 4°C. Pellets were washed with 10 mL ice-cold PBS, pooled, and then centrifuged at 800 g for 10 min at 4°C. Pellets were resuspended in 10 mL ice-cold PBS supplemented with cOmplete protease inhibitor (Roche), and then centrifuged at 800 g for 10 min at 4°C. Supernatant were removed completely, and the resultant pellets were snap-frozen in dry ice, and then stored at -80°C until analysis. Hela cells were grown in 10% FCS DMEM (supplemented with GlutaMAX) in monolayer at 37°C with 5% atmospheric CO2. Nucleic acid extraction was performed by Active Motif (Carlsbad, CA). Chromatin was isolated by adding lysis buffer, followed by disruption with a Dounce homogenizer. Lysates were sonicated and the DNA sheared to an average length of 300-500 bp with Active Motif’s EpiShear probe sonicator (cat# 53051). Genomic DNA (Input) was prepared by treating aliquots of chromatin with RNase, proteinase K and heat for de-crosslinking, followed by SPRI beads clean up (Beckman Coulter) and quantitation by Clariostar (BMG Labtech). Extrapolation to the original chromatin volume allowed determination of the total chromatin yield. An aliquot of chromatin (40 ug) was precleared with protein G agarose beads (Invitrogen). Genomic DNA regions of interest were isolated using 6 ug of antibody against Myc-tag (Abcam, ab9132, Lot# GR3325755-1). Complexes were eluted from the beads with SDS buffer, and subjected to RNase and proteinase K treatment. Crosslinks were reversed by incubation overnight at 65 oC, and ChIP DNA was purified by phenol-chloroform extraction and ethanol precipitation. Nucleic acid library construction was performed by Active Motif (Carlsbad, CA). Illumina sequencing libraries were prepared from the ChIP and Input DNAs by the standard consecutive enzymatic steps of end-polishing, dA-addition, and adaptor ligation. Steps were performed on an automated system (Apollo 342, Wafergen Biosystems/Takara).

characteristic: description

text: transfected with myc-SOX18

characteristic: genotype

text: 10% FCS DMEM (supplemented with Glutamax)

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

characteristic: organism part

text: Homo sapiens

text: 1_myc.SOX18 _tr1

characteristic: title


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text: ArrayExpress

characteristic: broker name

text: HeLa

text: epithelial cell

text: human

text: transfected with myc-SOX18

text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: IMBUQ

text: public

text: ArrayExpress

text: HeLa

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

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text: Homo sapiens

text: Homo sapiens

text: uterine cervix

text: Homo sapiens


text: IMBUQ

text: public

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

characteristic: description

text: co-transfected with myc-SOX18 and untagged-SOX18RaOp

characteristic: genotype

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: IMBUQ

text: public

text: ArrayExpress

text: HeLa

text: epithelial cell

text: human

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text: uterine cervix

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: External Id

text: Royal Botanic Garden Edinburgh

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text: NOT PROVIDED

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text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

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text: apple

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

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text: Royal Botanic Garden Edinburgh | Display Garden

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text: ROYAL BOTANIC GARDEN EDINBURGH

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text: WHOLE ORGANISM

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text: NOT PROVIDED

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characteristic: organism

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text: NOT PROVIDED

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characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

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characteristic: organism

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characteristic: title


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text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

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text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

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characteristic: geographic location (country and/or sea)

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text: Penicuick House Estate

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text: WHOLE ORGANISM

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text: HERMAPHRODITE MONOECIOUS

characteristic: sex

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text: NOT PROVIDED

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characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

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text: NOT PROVIDED

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characteristic: INSDC center name

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text: public

characteristic: INSDC status

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text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

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text: NOT PROVIDED

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text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

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text: Vogrie country park

characteristic: geographic location (region and locality)

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text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

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characteristic: geographic location (country and/or sea)

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characteristic: geographic location (region and locality)

text: on road verge in hedge

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characteristic: title


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text: WHOLE ORGANISM

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SAMI00000003-TEST TITLE CENTER EMAIL

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text: WHOLE ORGANISM

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: NOT PROVIDED

text: 84e00873-9094-4fa2-b28f-1327cc4bf410-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Mountlehoy Wood

text: at edge of planted wood

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

characteristic: specimen voucher

text: f5907f31-4239-4ea8-9dcd-08607c789424-DTOL-specimen


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Mountlehoy Wood

characteristic: geographic location (region and locality)

text: at edge of planted wood

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

text: 268971b1-8b1f-4461-9695-7d351028bba2-DTOL-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Mountlehoy Wood

text: at edge of planted wood

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: NOT PROVIDED

text: 236502fc-e295-43a9-8a09-86028a43c141-DTOL-specimen


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: near Eddelstone

characteristic: geographic location (region and locality)

text: on road verge

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

characteristic: specimen voucher

text: 5d809a91-2b96-42ab-b8d6-c1f831852e60-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: near Eddelstone

text: on road verge

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

text: dd0141c3-ca24-4b9d-8b36-2b91ec34d9c8-DTOL-specimen

characteristic: title

characteristic: tolid


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: near Eddelstone

characteristic: geographic location (region and locality)

text: on road verge

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: NOT PROVIDED

text: 5faf6eac-83dd-4029-a51c-f729a0e3a63a-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: near Fushiebridge

text: on road verge

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

characteristic: specimen voucher

text: 620ccf6f-932a-4428-ab2e-27fb187046a8-DTOL-specimen


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: near Fushiebridge

characteristic: geographic location (region and locality)

text: on road verge

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

text: ac513dfe-56d9-48cf-bf94-b6bb11a34669-DTOL-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Aberlady NR

text: on road verge

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: NOT PROVIDED

text: c2f6dd90-4494-4e1b-b2a8-604e028f6f09-DTOL-specimen


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Aberfoyle FLS

characteristic: geographic location (region and locality)

text: in pasture like setting with semi-natural woodland

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

characteristic: specimen voucher

text: bbb991e3-24e8-4872-9a8a-77045e6c12f3-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: United Kingdom

text: Aberfoyle FLS

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus sylvestris

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

text: e8cef3b0-6990-4146-b683-c3cf6397a05b-DTOL-specimen

characteristic: title

characteristic: tolid


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Aberfoyle FLS

characteristic: geographic location (region and locality)

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

characteristic: specimen id

text: NOT PROVIDED

text: 424af968-77d7-40a5-8b1d-569445de5cbe-DTOL-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanic Garden Edinburgh

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: apple

characteristic: common name

text: United Kingdom

text: Dollar Glen

text: on bank of burn in semi-natural wooded area

text: MARKUS RUHSAM

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

characteristic: lifestage

text: Malus domestica

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

characteristic: project name

text: Malus domestica

text: HERMAPHRODITE MONOECIOUS

text: NOT PROVIDED

characteristic: specimen voucher

text: dcb461ec-a7f5-4597-8d5c-f2a891b3712c-DTOL-specimen


text: Royal Botanic Garden Edinburgh

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC last update

text: public

text: COPO

characteristic: broker name

text: MARKUS RUHSAM

characteristic: collected by

text: ROYAL BOTANIC GARDEN EDINBURGH

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Craig Farm

characteristic: geographic location (region and locality)

text: in woodland pasture like setting

characteristic: habitat

text: MARKUS RUHSAM

characteristic: identified by

text: ROYAL BOTANIC GARDEN EDINBURGH

text: sporophyte

text: Malus sylvestris

text: WHOLE ORGANISM

text: DTOL

text: Malus sylvestris

text: HERMAPHRODITE MONOECIOUS

characteristic: sex

text: NOT PROVIDED

text: b9e4566e-2c73-43a3-b81c-00eace0c4710-DTOL-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Strasbourg

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:University of Strasbourg

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Tumors were removed from the tongue of C57BL6 and were cut into small pieces and inflated with digestion solution containing 1 mg/mL Collagenase D (Roche) and 0.2 mg/mL DNase I (Roche) 2% inactivated fetal bovine serum in RPMI, at 37°C for 2 hours. Upon completion of digestion, 92 µL of EDTA 54 mM was added and the samples were vortexed at maximal speed for 30 seconds. The resulting cell suspensions were passed through a 70 µm and 40 µm cell strainer, washed with PBS and placed in culture. cultured cells were dissolved in the TRizol reagent (Life Technologies) for total RNA extraction with Qiagen kit. Total RNAseqV2 library kit (Thermofisher Scientific)

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: isolated tumour cells cultured until passage 9

characteristic: growth condition

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: tongue

characteristic: organism part

characteristic: replicate

text: neoplasm

characteristic: sampling site

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Cambridge

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Cambridge by Rob Howes, The Lighthouse Lab in Cambridge and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Cambridge

characteristic: description

text: United Kingdom

text: Wales

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


text: SC

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

text: SC

text: Health Services Laboratories

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

characteristic: title


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: description

text: United Kingdom

text: Wales

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Wales

text: Human


characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

tag: Namespace:Institute of Medical Virology, Zürich, Switzerland

text: SIB

characteristic: broker name

text: Unilabs, Dübendorf, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Verena Kufner, Gabriela Ziltener, Maryam Zaheri, Stefan Schmutz, Annette Audigé, Maria Grünberg, Kevin Steiner, Jon Huder, Cyril Shah, Riccarda Capaul, Guido Bloemberg, Jürg Böni, Michael Huber, Alexandra Trkola

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba458a2/2021

characteristic: isolate


text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Spital Limmattal, Schlieren, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-UZH-IMV-3ba457ce/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Spital Männedorf AG, Männedorf, Switzerland

characteristic: collecting institution

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba457d5/2021

characteristic: organism


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba4582a/2021

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba4584b/2021

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba458fd/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: UniversitätsSpital Zürich 009, Zürich, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-4553c664/2021

characteristic: isolate


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Kantonsspital Aarau, Aarau, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-UZH-IMV-3ba47a7d/2021

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: broker name

text: Kantonsspital Baden AG, Baden, Switzerland

characteristic: collecting institution

text: Switzerland

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-UZH-IMV-3ba47ddc/2021

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

text: Analytica, Zürich, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

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