E-MTAB-9359:GS5 MVMp

characteristic: ENA-FIRST-PUBLIC

text: Centro de Biologia Molecular Severo Ochoa (CBMSO CSIC-UAM)

text: public

text: E-MTAB-9359:GS5 MVMp

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: patient derived cancer stem cell

text: human

characteristic: description

text: glioblastoma multiforme

characteristic: disease

text: neurosphere culture

text: Parvovirus Prototype strain Minute Virus of Mice (MVMp)

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: GS5 MVMp


E-MTAB-9359:GS5 MVMp NS1+ Pp53+

status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9359:GS5 MVMp NS1+ Pp53+

tag: Namespace:Centro de Biologia Molecular Severo Ochoa (CBMSO CSIC-UAM)

text: ArrayExpress

text: patient derived cancer stem cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Infected GSCs growing as neurospheres in CSC medium (see Growth Protocol section, below) were harvested at 3 days post-infection, in parallel to the respective uninfected controls. The GSCs were selected for the Pp53 and NS1 phenotypes outlined above by fluorescence-activated cell sorting (FACS) as follows. Neurospheres were centrifuged (F15, Falcon) for 5 min at 10.000xg at 4 ºC, dissociated into isolated cells by a mild trypsin-EDTA digestion at room temperature, diluted in PBS and placed on ice. Cells recovered from neurospheres (either Mock or MVM infected) were washed in cold diethylpyrocarbonate-treated (DEPC) phosphate-buffered saline (PBS) prepared with nuclease-free water (Gifco, distilled water DNase/RNase free 10977-035), thoroughly dispersed by flushing through a 0.45 mm needle, fixed with ethanol at -20 °C added dropwise while stirring, and then left to complete fixation for 24 hours at 4 °C. To stain with antibodies, washed cells were permeabilized with PBS-0.1% Tritón, which was also the buffer used in the washes. Antibody staining was performed in autoclaved PBS, 0.1% Triton, 1% gelatin, supplemented with 20 mM Vanadyl Ribonucleoside Complexes (VRC, Sigma) for RNase inhibition, and micro-precipitates removed by filtration through 0.22 m. Incubations with primary (anti-Pp53S15 and anti-NS1; 1/400) and secondary (anti-mouse-Cy5 and anti-rabbit-FITC; 1/500) antibodies were for 16 and 4 hours respectively with rotary agitation at 4 ºC. Finally the cell suspension was washed in PBS-0.1% Triton, clumps removed by filtration (30 ), and concentration adjusted to 106 cell/ml in cold PBS-DEPC, 1% autoclaved gelatin, and 20 mM VRC. Before fluorescence-activated cell sorting (FACS), the equipment circuit was extensively washed with autoclaved PBS-DEPC pre-cooled at 4 °C, and sorting was performed with autoclaved sheath fluid The glioblastoma stem cells (GSCs) were isolated and growth from human brain tumours. Fresh surgical biopsies minced and incubated in 0,1% trypsin and 0,04% DNase (type II, Sigma) in PBS for 45 min at 37 ºC were mechanically dissociated by passing through fire-polished Pasteur pipettes. The cell suspension was filtered through a 40 mm cell strainer (BD), number and viability measured by trypan blue exclusion, and stored frozen in aliquots in liquid nitrogen at this stage. To be grown as Neurospheres, GSCs were seeded at a density of 1x105 viable cells/ml in Cancer Stem Cells proliferation medium (CSC medium) consisting of DMEM:F12 (1:1) supplemented with glutamax (Gibco), 0,5% Albumax I (Gibco), 5 mM Hepes (Gibco), 0,6% Glucose (Sigma), N2 (1x, Invitrogen), 2 mg/ml heparin (Sigma), 20 ng/ml of both epidermal growth factor (EGF) and basic fibroblast growth factor (FGF-2) (Peprotech), aminoacids (L-Ala 44 mM, L-Asn 45 mM, L-Asp 40 mM, L-Glu 40 mM, L-Pro 30 mM) and gentamicine (0,055 mg/ml) Viral infection, GSC neurospheres grown and fed twice a week with 20% volume of fresh CSC medium until reaching 200-300 mm in size, were dissociated into isolated cells by a mild trypsin-EDTA digestion at room temperature together with mechanically passing through micropipette tips. Cells were washed in CSC and resuspended in the same medium at a density of 1x107 viable cells/ml. The virus was immediately added at a multiplicity of 5-10 PFU/cell and adsorption proceeded under shaking at 37 ºC for 1 h. For the infection we used exclusively purified stocks of the MVMp and MVMi parvovirus strains devoid of empty capsids by two rounds of CsCl centrifugation, dialyzed against phosphate- buffered saline (PBS), and sterile filtered (0.22 m). At the end of the adsorption period cells were washed again and seeded onto P100 dishes at a density of 1x105 viable cells/ml in CSC medium. The FACS-sorted cells were collected on sterile tubes (F15, Falcon) on ice and the TRIzol reagent (Ambion; Invitrogen) was immediately added. Total RNA isolation was performed with chloroform, isopropanol and ethanol, according to the instructions of the manufacturer cDNA was synthetized from 250ng of RNA using the High Capacity cDNA Archive Kit (Applied Biosystems, Thermo Fisher) following the manufacturer´s instructions in a GeneAmp PCR Systems 9700 (Applied Biosystems, Thermo Fisher). From cDNAs we perform a first PCR of 30 cycles with Q5® Hot Start High-Fidelity DNA Polymerase (New England Biolabs) in the presence of 500nM primers for p53 amplification For each primer pair we optimized the PCR doing a temperature gradient to obtain the optimal annealing temperatures. After the first PCR, a second PCR of 13 cycles was performed with Q5® Hot Start High-Fidelity DNA Polymerase (New England Biolabs) in the presence of 400nM of primers of the Access Array Barcode Library for Illumina Sequencers (Fluidigm).

text: glioblastoma multiforme

text: neurosphere culture

characteristic: growth condition

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: NS1+ Pp53+

characteristic: phenotype

text: Homo sapiens

text: GS5 MVMp NS1+ Pp53+

characteristic: title


E-MTAB-9359:GS5 MVMp NS1+ Pp53-

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-9359:GS5 MVMp NS1+ Pp53-

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: patient derived cancer stem cell

text: human

characteristic: description

text: glioblastoma multiforme

characteristic: disease

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: NS1+ Pp53-

text: Homo sapiens

text: GS5 MVMp NS1+ Pp53-


E-MTAB-9359:GS7 MVMp

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9359:GS7 MVMp

text: ArrayExpress

text: patient derived cancer stem cell

text: human

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: GS7 MVMp


E-MTAB-9359:GS7 MVMp NS1+ Pp53+

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9359:GS7 MVMp NS1+ Pp53+

text: ArrayExpress

text: patient derived cancer stem cell

characteristic: cell type

text: human

characteristic: common name

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: NS1+ Pp53+

text: Homo sapiens

text: GS7 MVMp NS1+ Pp53+


E-MTAB-9359:GS7 MVMp NS1+ Pp53-

text: public

text: E-MTAB-9359:GS7 MVMp NS1+ Pp53-

text: ArrayExpress

text: patient derived cancer stem cell

text: human

text: glioblastoma multiforme

text: neurosphere culture

characteristic: growth condition

characteristic: infect

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: NS1+ Pp53-

characteristic: phenotype

text: Homo sapiens

text: GS7 MVMp NS1+ Pp53-


E-MTAB-9359:GS8 MVMp

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-9359:GS8 MVMp

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: patient derived cancer stem cell

text: human

characteristic: description

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: GS8 MVMp

characteristic: title


E-MTAB-9359:GS8 MVMp NS1+ Pp53+

characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9359:GS8 MVMp NS1+ Pp53+

text: ArrayExpress

text: patient derived cancer stem cell

text: human

text: glioblastoma multiforme

characteristic: disease

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: NS1+ Pp53+

text: Homo sapiens

text: GS8 MVMp NS1+ Pp53+


E-MTAB-9359:GS8 MVMp NS1+ Pp53-

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9359:GS8 MVMp NS1+ Pp53-

text: ArrayExpress

text: patient derived cancer stem cell

characteristic: cell type

text: human

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: NS1+ Pp53-

text: Homo sapiens

text: GS8 MVMp NS1+ Pp53-


E-MTAB-9359:GS5 Mock

text: public

text: E-MTAB-9359:GS5 Mock

text: ArrayExpress

text: patient derived cancer stem cell

text: human

characteristic: common name

text: glioblastoma multiforme

text: neurosphere culture

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

characteristic: organism part

text: Homo sapiens

text: GS5 Mock


E-MTAB-9359:GS7 Mock

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-9359:GS7 Mock

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: patient derived cancer stem cell

text: human

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: GS7 Mock


E-MTAB-9359:GS8 Mock

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-9359:GS8 Mock

text: ArrayExpress

text: patient derived cancer stem cell

text: human

characteristic: description

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: GS8 Mock

characteristic: title


E-MTAB-9359:GS9 Mock

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-9359:GS9 Mock

text: ArrayExpress

text: patient derived cancer stem cell

text: human

text: glioblastoma multiforme

text: neurosphere culture

text: Homo sapiens

text: Homo sapiens

text: brain

text: Homo sapiens

text: GS9 Mock


text: JOHN INNES CENTRE, NORWICH, UK.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:JOHN INNES CENTRE, NORWICH, UK.

characteristic: collection date

text: Genomic long reads of Lathyrus sativus genotype LS007, sequenced at University of Nottingham. Extracted using Circulomics Nanobind kit, with Ampure bead cleanup.

text: 6.3 Gbp

characteristic: estimated size

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: B5-agar media

characteristic: isolation and growth condition

text: dark

characteristic: light regimen

characteristic: number of replicons

text: Lathyrus sativus

text: seedling

characteristic: plant developmental stage

text: B5-agar media

characteristic: plant growth medium

text: whole plant etiolated seedling

characteristic: plant structure

characteristic: ploidy

text: healthy

characteristic: sample health state

text: Lathyrus sativus

text: Grass pea (Lathyrus sativus) LS007 genomic PromethION data


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: JOHN INNES CENTRE, NORWICH, UK.

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Genomic long reads of Lathyrus sativus genotype LS007, sequenced at University of Nottingham. Extracted using Qiagen DNeasy kit followed by Circulomics Short Read Exclusion.

characteristic: description

text: 6.3 Gbp

text: United Kingdom

text: growth chamber

text: B5-agar media

text: dark

text: Lathyrus sativus

characteristic: organism

text: seedling

text: B5-agar media

text: whole plant etiolated seedling

text: healthy

text: Lathyrus sativus

characteristic: title


text: JOHN INNES CENTRE, NORWICH, UK.

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collection date

text: Genomic long reads of Lathyrus sativus genotype LS007, sequenced at University of Nottingham. Extracted using Circulomics Nanobind kit, followed by needle shearing and Circulomics short read exclusion.

text: 6.3 Gbp

characteristic: estimated size

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: growth chamber

characteristic: growth facility

text: B5-agar media

characteristic: isolation and growth condition

text: dark

characteristic: light regimen

characteristic: number of replicons

text: Lathyrus sativus

text: seedling

text: B5-agar media

text: whole plant etiolated seedling

text: healthy

text: Lathyrus sativus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

tag: Namespace:ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH

text: 76 bp long amplicon, part of rbcL gene

text: extraction negative control

characteristic: environment (biome)

text: extraction negative control

characteristic: environment (feature)

text: extraction negative control

characteristic: environment (material)

text: Pacific Ocean

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: 53.99266 N

text: 162.37583 E

text: eukaryote

characteristic: investigation type

text: marine sediment metagenome

text: Diatom derived ancient DNA from marine sediments

characteristic: project name

text: marine sediment metagenome

text: sediment

characteristic: sediment environmental package

text: Illumina NextSeq 500, 2 x 150 bp paired-end

characteristic: sequencing method


text: ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: 76 bp long amplicon, part of rbcL gene

characteristic: description

text: extraction negative control

text: extraction negative control

text: extraction negative control

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: 53.99266 N

characteristic: geographic location (latitude)

text: 162.37583 E

characteristic: geographic location (longitude)

text: eukaryote

text: marine sediment metagenome

characteristic: organism

text: marine sediment metagenome

text: sediment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: 76 bp long amplicon, part of rbcL gene

text: extraction negative control

characteristic: environment (biome)

text: extraction negative control

characteristic: environment (feature)

text: extraction negative control

characteristic: environment (material)

text: Atlantic Ocean

characteristic: geographic location (depth)

text: 78.915662 N

text: 6.767167 E

text: eukaryote

text: marine sediment metagenome

text: marine sediment metagenome

text: sediment


text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

tag: Namespace:PHILIP MORRIS INTERNATIONAL R&D

characteristic: Submitter Id

text: CHTP

characteristic: chemical administration

characteristic: collection date

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: sample:sa001;condition:CHTP;cage:62;month:2;kit=2-q;sampling=pooled;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

text: public

text: THS

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: mouse gut metagenome

characteristic: organism

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa002;condition:THS;cage:82;month:2;kit=2-q;sampling=pooled;

characteristic: title


text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: chemical administration

text: ENVO:01001406 laboratory facility

characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa003;condition:3R4F;cage:40;month:2;kit=2-q;sampling=pooled;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: PHILIP MORRIS INTERNATIONAL R&D

text: public

text: CHTP

characteristic: collection date

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: sample:sa004;condition:CHTP;cage:60;month:4;kit=2-q;sampling=pooled;


characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Cess

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: mouse gut metagenome

characteristic: organism

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa005;condition:Cess;cage:129;month:4;kit=2-q;sampling=pooled;

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SwitchCHTP

characteristic: chemical administration

text: ENVO:01001406 laboratory facility

characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa006;condition:SwitchCHTP;cage:117;month:2;kit=2-q;sampling=pooled;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

text: public

text: Sham

characteristic: collection date

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: sample:sa007;condition:Sham;cage:20;month:2;kit=2-q;sampling=pooled;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: CHTP

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: mouse gut metagenome

characteristic: organism

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa008;condition:CHTP;cage:57;month:3;kit=2-q;sampling=pooled;

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sham

characteristic: chemical administration

text: ENVO:01001406 laboratory facility

characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa009;condition:Sham;cage:15;month:3;kit=2-q;sampling=pooled;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

text: public

text: THS

characteristic: collection date

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: sample:sa010;condition:THS;cage:80;month:5;kit=2-q;sampling=pooled;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Sham

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: host-associated

text: metagenome

text: mouse gut metagenome

characteristic: organism

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa011;condition:Sham;cage:19;month:1;kit=2-q;sampling=pooled;

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Sham

characteristic: chemical administration

text: ENVO:01001406 laboratory facility

characteristic: environment (biome)

text: ENVO:01000922 animal cage

characteristic: environment (feature)

text: ENVO:00002003 fecal material

characteristic: environment (material)

text: Singapore

text: host-associated

text: metagenome

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

text: mouse gut metagenome

text: Illumina

text: sample:sa012;condition:Sham;cage:17;month:5;kit=2-q;sampling=pooled;


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC center name

text: public

text: THS

characteristic: collection date

text: ENVO:01001406 laboratory facility

text: ENVO:01000922 animal cage

text: ENVO:00002003 fecal material

text: Singapore

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: mouse gut metagenome

text: PRJEB39465 (ERP122979)

characteristic: project name

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

text: sample:sa013;condition:THS;cage:81;month:5;kit=2-q;sampling=pooled;


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: PHILIP MORRIS INTERNATIONAL R&D

characteristic: INSDC first public

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characteristic: title