characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: No

characteristic: acne medication

text: No

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: Yes

characteristic: alcohol consumption

text: Occasionally (1-2 times/week)

text: true

text: false

text: false

text: true

text: false

text: false

text: true

characteristic: allergic to i have no food allergies that i know of

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

text: No

text: Never

text: I do not have this condition

text: I do not have this condition

text: Never

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: No

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Yes

text: No

text: Never

text: United States

text: United States

text: Not at all

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Not at all

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: Not at all

text: Every day

text: Very good

text: true

text: false

text: false

text: false

text: false

text: No

text: Most of the time

text: No

text: No

text: Not at all

text: No

text: Not at all

text: Satisfied

text: No symptoms or signs

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: No

text: Not at all

text: Not at all

text: No

text: I use deodorant

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: Yes

text: I am right handed

text: City

text: Host-associated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Both

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Daily

text: I have not gotten the flu vaccine in the past year.

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: human

text: cc5d48d6533580b5a6916cc4af3168b1a8ed1ddb524f6f097d807523171f0bed49faeb66cdcf40a4d18654f10f6a7f360d1df5155f53c383222364fbffb9d113

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Bachelor's degree

text: I do not have this condition

text: No

text: I do not have this condition

text: Regularly (3-5 times/week)

text: No

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: No

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Regularly (3-5 times/week)

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Rarely (a few times/month)

text: Regularly (3-5 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Never

text: Caucasian

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: One

text: No

text: Rarely (less than once/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Daily

text: Never

text: Never

text: Regularly (3-5 times/week)

text: Increased more than 10 pounds

text: kilograms

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)


status: PUBLIC

tag: attribute

text: UCSDMI

text: public

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: Yes

text: Regularly (3-5 times/week)

text: true

text: false

text: false

text: true

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: anonymized name

text: 6 months

text: No

text: Never

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

text: Never

characteristic: birth year

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: One

text: I tend to have normal formed stool - Type 3 and 4

text: No

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Yes

characteristic: chickenpox

text: Unspecified

characteristic: clinical condition

text: Yes

text: No

characteristic: contraceptive

text: Never

text: United States

characteristic: country of birth

text: United States

text: Not at all

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Not at all

text: Mild

text: Mild

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Not at all

text: Every day

text: Good

text: true

text: false

text: false

text: false

text: false

text: Yes

text: Always, as recommended

text: Yes

text: No

text: Not at all

text: No

text: Not at all

text: Satisfied

text: No symptoms or signs

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: true

text: No

text: Mild

text: Not at all

text: Not at all

text: No

text: Not sure, but I use some form of deodorant/antiperspirant

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: Yes

text: I am left handed

text: Filtered

text: Host-associated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Outdoors

text: Primarily infant formula

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: 6 months

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: I do not have this condition

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: human

text: 4ef5e551a011123d148c3ec1841247c88823ec6a9c05af1a21e338bf44da610df95921016128b32ab263740bf7e67374d3a583fb36447c15db920335c6ff509b

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: I have lived in my current state of residence for more than a year.

text: I have not been outside of my country of residence in the past year.

text: Bachelor's degree

text: I do not have this condition

text: No

text: I do not have this condition

text: Daily

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Self-diagnosed

text: Never

text: Daily

text: No

text: No

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Never

text: Regularly (3-5 times/week)

text: No

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Asian or Pacific Islander

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: TRUE

text: FALSE

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: Less than 5

text: Regularly (3-5 times/week)

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Regularly (3-5 times/week)

text: Never


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: No

characteristic: acne medication

text: No

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: No

characteristic: alcohol consumption

text: Never

text: true

text: false

text: false

text: false

text: false

text: false

text: true

characteristic: allergic to i have no food allergies that i know of

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

text: Year

text: No

text: Daily

text: I do not have this condition

text: I do not have this condition

text: Unspecified

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: Three

text: I tend to have diarrhea (watery stool) - Type 5, 6 and 7

text: No

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: Yes

text: I do not have this condition

text: Not sure

text: No

text: Never

text: United States

text: United States

text: Not at all

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: Not at all

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: Not at all

text: Every day

text: Good

text: false

text: false

text: false

text: true

text: false

text: No

text: Most of the time

text: Not at all

text: Yes

text: Not at all

text: Satisfied

text: No symptoms or signs

text: false

text: true

text: true

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: No

text: Not at all

text: Not at all

text: No

text: I use deodorant

text: American Gut Project Stool sample

text: Diagnosed by a medical professional (doctor, physician assistant)

text: Type II diabetes

text: Omnivore

text: Yes

text: No

text: I am right handed

text: Unspecified

text: Host-associated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Rarely (a few times/month)

text: Indoors

text: Primarily infant formula

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: I do not have this condition

text: No

text: centimeters

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)

text: human

text: 3ac7f0efbe426aa6113a53ba709663ac559453e578e889c5ddd58d07b8d828853b562734db25907246710d782db150b786151352cc432fd9159b8a6e1e2eef9d

text: I do not have this condition

text: Unspecified

text: Self-diagnosed

text: I do not have this condition

text: No

text: Some college or technical school

text: I do not have this condition

text: No

text: I do not have this condition

text: Daily

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: I do not have this condition

text: Rarely (less than once/week)

text: Rarely (less than once/week)

text: No

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Unspecified

text: Never

text: Regularly (3-5 times/week)

text: No

text: Daily

text: Never

text: Caucasian

text: Rarely (less than once/week)

text: Regularly (3-5 times/week)

text: One

text: No

text: Daily

text: Stool

text: human gut metagenome

text: Rarely (less than once/week)

text: No

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: American Gut Project

text: No

text: 21 to 30

text: Occasionally (1-2 times/week)

text: Never

text: Never

text: Never

text: Decreased more than 10 pounds

text: kilograms

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)


text: UCSDMI

text: public

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: No

text: Never

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: anonymized name

text: 6 months

text: No

text: Regularly (3-5 times/week)

text: I do not have this condition

characteristic: asd

characteristic: autoimmune

text: Unspecified

characteristic: birth year

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Less than one

text: No

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: Yes

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

text: Not sure

text: No

characteristic: contraceptive

text: Rarely (a few times/month)

text: United States

characteristic: country of birth

text: United States

text: Not at all

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: true

text: false

text: true

text: false

text: false

text: false

text: false

text: Not at all

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: Not at all

text: Every day

text: Good

text: true

text: false

text: false

text: false

text: false

text: No

text: Unspecified

text: No

text: No

text: Not at all

text: No

text: Not at all

text: Satisfied

text: No symptoms or signs

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Unspecified

text: Not at all

text: Not at all

text: Yes

text: I use an antiperspirant

text: American Gut Project Stool sample

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: Bottled

text: I don't drink

text: Host-associated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Never

text: None of the above

text: Not sure

text: Never

text: Daily

text: Year

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: human

text: 3ae5686ea9b4c87ec9e293ca4f2827d67b04cbab364b308d02615012cfa999af283b99c6737def930c675202519219b97f9f975379f38096049382df271731a1

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: No

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: I do not have this condition

text: Occasionally (1-2 times/week)

text: Rarely (less than once/week)

text: Yes

text: No

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Unspecified

text: Never

text: Occasionally (1-2 times/week)

text: No

text: Regularly (3-5 times/week)

text: Never

text: African American

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: female

text: I do not have this condition

text: I do not have this condition

text: 6-7 hours

text: Never

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Regularly (3-5 times/week)

text: Regularly (3-5 times/week)

text: Daily

text: American Gut Project

text: No

text: 6 to 10

text: Occasionally (1-2 times/week)

text: Never

text: Never

text: Never

text: Remained stable

text: kilograms

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: I do not have this condition

text: No

characteristic: acne medication

text: No

text: I do not have this condition

characteristic: age cat

characteristic: age years

text: Yes

characteristic: alcohol consumption

text: Rarely (a few times/month)

text: true

text: true

text: false

text: false

text: false

text: false

text: true

characteristic: allergic to i have no food allergies that i know of

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: alzheimers

text: I have not taken antibiotics in the past year.

text: No

text: Never

text: I do not have this condition

text: I do not have this condition

text: Unspecified

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: One

text: No

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: No

text: I do not have this condition

text: Not sure

text: I do not have this condition

text: Yes

text: No

text: Never

text: United States

text: United States

text: Not at all

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: Not at all

text: Mild

text: Mild

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: Not at all

text: Every day

text: Very good

text: true

text: false

text: false

text: false

text: false

text: No

text: Unspecified

text: Not at all

text: No

text: Not at all

text: Very satisfied

text: No symptoms or signs

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Unspecified

text: Not at all

text: Not at all

text: No

text: I use an antiperspirant

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: Yes

text: I am right handed

text: Filtered

text: Host-associated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Daily

text: Outdoors

text: Primarily breast milk

text: Never

text: Daily

text: Year

text: Daily

text: Daily

text: I do not have this condition

text: No

text: centimeters

text: Occasionally (1-2 times/week)

text: Regularly (3-5 times/week)

text: human

text: 81aea269da97f6e02ba60f6da2d165cdd03b01aecf1f8a28d3104eb8638f793e7bf1d4a64a16a62049604088171d57a63e17993e65da2c0bcda53d57b12c96ea

text: I do not have this condition

text: Unspecified

text: I do not have this condition

text: I do not have this condition

text: No

text: Some graduate school or professional

text: I do not have this condition

text: No

text: Occasionally (1-2 times/week)

text: No

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: I do not have this condition

text: Daily

text: Daily

text: Yes

text: No

text: FALSE

text: FALSE

text: TRUE

text: TRUE

text: FALSE

text: FALSE

text: Occasionally (1-2 times/week)

text: Daily

text: human gut metagenome

text: Yes

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Unspecified

text: Rarely (a few times/month)

text: Occasionally (1-2 times/week)

text: No

text: Occasionally (1-2 times/week)

text: Daily

text: Caucasian

text: Occasionally (1-2 times/week)

text: Occasionally (1-2 times/week)

text: No

text: Daily

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: Yes

text: male

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: Yes

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: TRUE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: FALSE

text: Never

text: Daily

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 11 to 20

text: Daily

text: Never

text: Never

text: Rarely (a few times/month)

text: Remained stable

text: kilograms

text: Occasionally (1-2 times/week)

text: Daily


text: UCSDMI

text: public

text: I do not have this condition

text: No

text: No

text: I do not have this condition

text: No

text: Never

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: I do not have this condition

characteristic: anonymized name

text: No

text: Never

text: I do not have this condition

characteristic: asd

text: I do not have this condition

characteristic: autoimmune

text: Rarely (less than once/week)

characteristic: birth year

characteristic: bmi

text: UBERON:feces

characteristic: body habitat

text: UBERON:feces

characteristic: body product

text: UBERON:feces

characteristic: body site

text: Less than one

text: I tend to be constipated (have difficulty passing stool) - Type 1 and 2

text: No

text: I do not have this condition

characteristic: cancer

text: Unspecified

characteristic: cancer treatment

text: I do not have this condition

text: No

characteristic: cat

text: I do not have this condition

characteristic: cdiff

text: No

characteristic: chickenpox

text: I do not have this condition

characteristic: clinical condition

text: No

text: No

characteristic: contraceptive

text: Regularly (3-5 times/week)

text: Singapore

characteristic: country of birth

text: United States

text: Nearly every day

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Nearly every day

text: Severe

text: Severe

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Several days per week

text: 1-2 days per week

text: Fair

text: true

text: false

text: false

text: false

text: false

text: No

text: Unspecified

text: Somewhat noticeable

text: No

text: Somewhat interfering

text: Dissatisfied

text: No symptoms or signs

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Mild

text: Somewhat worried

text: Nearly every day

text: No

text: I do not use deodorant or an antiperspirant

text: American Gut Project Stool sample

text: I do not have this condition

text: Unspecified

text: Omnivore

text: Yes

text: No

text: I am right handed

text: City

text: I don't drink

text: Host-associated

text: Animal

text: Animal distal gut

text: dense settlement biome

text: human-associated habitat

text: human-gut

text: feces

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Depends on the season

text: Primarily breast milk

text: Occasionally (1-2 times/week)

text: Daily

text: Month

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: I do not have this condition

text: No

text: centimeters

text: Rarely (less than once/week)

text: Daily

text: human

text: 85c880c2c08cc434767d9f35841a3903a765c1a248653eae0d846e3cb1ef15ab3471bd02ae3e37ddd87904890bcde726333bd99d2a386c6f3e46e88b19f90c28

text: I do not have this condition

text: Unspecified

text: Self-diagnosed

text: I do not have this condition

text: Yes

text: Within the past year

text: 1 year

text: Graduate or Professional degree

text: I do not have this condition

text: No

text: Regularly (3-5 times/week)

text: Yes

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: Rarely (less than once/week)

text: Daily

text: No

text: No

text: false

text: false

text: true

text: false

text: false

text: false

text: Occasionally (1-2 times/week)

text: Daily

text: human gut metagenome

text: No

text: No

text: UCSDMI

text: Yes

text: I do not have this condition

text: Regularly (3-5 times/week)

text: Rarely (a few times/month)

text: Regularly (3-5 times/week)

text: No

text: Rarely (less than once/week)

text: Rarely (a few times/month)

text: Asian or Pacific Islander

text: Rarely (less than once/week)

text: Rarely (less than once/week)

text: One

text: No

text: Regularly (3-5 times/week)

text: Stool

text: human gut metagenome

text: Occasionally (1-2 times/week)

text: No

text: female

text: I do not have this condition

text: I do not have this condition

text: 7-8 hours

text: Never

text: Yes

text: false

text: false

text: false

text: false

text: false

text: true

text: false

text: false

text: false

text: false

text: false

text: false

text: false

text: Rarely (less than once/week)

text: Occasionally (1-2 times/week)

text: Daily

text: I do not have this condition

text: American Gut Project

text: No

text: 6 to 10

text: Regularly (3-5 times/week)

text: Never

text: Rarely (a few times/month)

text: Regularly (3-5 times/week)

text: Remained stable

text: kilograms

text: Regularly (3-5 times/week)

text: Occasionally (1-2 times/week)


E-MTAB-10670:Bound 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ZMBH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10670:Bound 1

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: Protocols: Centrifugation Trizol Illumina standard kit

characteristic: description

text: bloodstream form

characteristic: developmental stage

text: nagana

characteristic: disease

characteristic: genotype

text: Trypanosoma brucei brucei

characteristic: organism

text: Trypanosoma brucei brucei

text: whole organism

characteristic: organism part

text: Trypanosoma brucei brucei

text: Bound 1

characteristic: title


E-MTAB-10670:Bound 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ZMBH

text: public

text: E-MTAB-10670:Bound 2

text: ArrayExpress

text: bloodstream form

text: nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Bound 2


E-MTAB-10670:Bound 3

characteristic: External Id

text: ZMBH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10670:Bound 3

text: ArrayExpress

text: bloodstream form

text: nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Bound 3


E-MTAB-10670:Unbound 1

text: ZMBH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10670:Unbound 1

text: ArrayExpress

text: bloodstream form

text: nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Unbound 1


E-MTAB-10670:Unbound 2

text: ZMBH

text: public

text: E-MTAB-10670:Unbound 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: bloodstream form

text: nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Unbound 2


E-MTAB-10670:Unbound 3

text: ZMBH

text: public

text: E-MTAB-10670:Unbound 3

text: ArrayExpress

characteristic: description

text: bloodstream form

characteristic: developmental stage

text: nagana

characteristic: disease

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Unbound 3


text: Translational Radio Oncology (E210)

text: public

tag: Namespace:Translational Radio Oncology (E210)

unit: week

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: C57BL/6J mice were used in this experiment. Dissociation according to Miltenyi mouse lung dissociation kit (https://www.miltenyibiotec.com/DE-en/products/lung-dissociation-kit-mouse.html#gref). The Miltenyi proprietary protocol of the kit was strictly followed. Debris were removed using the debris removal solution by Miltenyi, following strictly the Miltenyi protocol (https://www.miltenyibiotec.com/DE-en/products/debris-removal-solution.html#gref). No particular cell types were enriched or filtered out. There were 2-3 mice per experimental group, which were pooled for each sample. For all studies, mice were randomized into treatment groups according to tumor volume on the day of treatment initiation (day 0). Bintrafusp alfa, anti-PD-L1, TGF-β trap, and isotype control Bintrafusp alfa (BA, previously reported as M7824) is a bifunctional fusion protein composed of the extracellular domain of the TGF-βRII to function as a TGF-β “trap” fused to a human IgG1 antibody blocking PD-L1. The isotype control is a mutated version of anti-PD-L1, which completely lacks PD-L1 binding. In tumor-bearing mice, BA (492 μg) or isotype control (400 μg) were administered with an intravenous injection (i.v.) in 0.2 mL PBS. Mice were treated with 15 Gy RT and, 16 weeks later, treated with Bintrafusp (492 μg) or isotype control (400 μg) on day 0, 3, and 6. Radiation (RT) To assess the combination of radiation with Bintrafusp (BA), mice were randomized into the following treatment groups: isotype control (400 μg), RT (exact dose and schedule provided in the figure legends) + isotype control, BA (492 μg), or BA + RT (BART). Mice were treated with 15 Gy RT 16 weeks prior to BA or isotype control. Whole thoracic irradiation was administered. Briefly, a photon beam was delivered by a 6 MV Artiste Linac (Siemens) at a dose rate of 3 Gy/min in anesthetized mice. The LINAC generates a (6 MV) x-ray photon beam with a dose rate of 3 Gy/min. According to 10x genomics proprietary protocol of the kit According to 10x genomics proprietary protocol of the kit: https://support.10xgenomics.com/single-cell-gene-expression/library-prep/doc/user-guide-chromium-single-cell-3-reagent-kits-user-guide-v2-chemistry) page31ff

text: adult

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Department of Molecular Microbiology John Innes Centre

text: ArrayExpress

text: Protocols: Streptomyces venezuelae strain NRRL B-65442 (NCBI Ref: NZ_CP018074.1) was used as the wild type strain. The WhiB and WhiA deletion strains were made using 'Redirect' PCR targeting (Gust et al., 2003; Gust et al., 2004), to replace the genes with a single apramycin resistance (apr) cassette in the wild type Streptomyces venezuelae strain. The Δwhi[AB]::apr locus was transduced back into wild type S. venezuelae using the transducing phage SV1 (Stuttard et al., 1982)to generate the deletion strains. Formaldehyde was added to cultures at a final concentration of 1% (vol/vol), and incubation was continued for 30 min. Glycine was then added to a final concentration of 125 mM to stop the cross-linking. The samples were left at room temperature for 5 min and washed twice in phosphate-buffered saline (PBS) buffer (pH 7.4). The pellets were resuspended in 0.5 ml of lysis buffer (10 mM Tris-Cl, pH 8.0, 50 mM NaCl), containing 15 mg/ml of lysozyme and 1x protease inhibitor (Roche Applied Science) and incubated at 37 degree C for 25 min or until lysed. Subsequently, 0.5 ml immunoprecipitation (IP) buffer (50 mM Tris-Cl, pH 8.0, 250 mM NaCl, 0.8% [vol/vol] Triton X-100), containing 1x protease inhibitor, was added, and the samples were chilled on ice. The samples were sonicated for six cycles of 20 s each at 10 micrometer to shear chromosomal DNA into fragments ranging from 300 to 1,000 bp on average. The samples were centrifuged twice at 16,000g at 4 degree C for 10 min to clear the cell extracts. For total DNA extraction, 50 microlitres of the cell extracts were incubated with 0.2 mg/ml proteinase K (Roche) for 2 h at 55 degree C, then extracted twice with phenol-chloroform and once with chloroform and further purified using QiaQuick columns (Qiagen). DNA was eluted in 50 microlitres EB buffer (10 mM Tris-Cl, pH 8.5) and quantified using a NanoDrop spectrophotometer (Thermo Scientific). Library construction and sequencing were performed by The Genome Analysis Centre (TGAC), Norwich Research Park, Norwich, United Kingdom. The TruSeq ChIP sample preparation kit from Illumina Inc. (part 15023092, revision A, August 2012) was used according to the recommended protocol. In brief, 5 to 10 ng ChIP DNA is blunt ended and phosphorylated, and a single A nucleotide is added to the 3 ends of the fragments in preparation for ligation to an adapter with a single-base T overhang. The ligation products are purified and accurately size selected by agarose gel electrophoresis. Size-selected DNA is then purified and PCR amplified to enrich for fragments that have adapters on both ends. The final purified product is then quantified using a combination of Bioanalyzer DNA HS Chip from Agilent Technology 2100 Bioanalyzer and Qubit 2.0 from Invitrogen. The libraries were normalized to 10 nM and pooled, and quantitative PCR (q-PCR) was performed prior to cluster generation.

text: deletion of whiA

characteristic: genetic modification

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: Streptomyces venezuelae

characteristic: title


text: Department of Molecular Microbiology John Innes Centre

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: deletion of whiA

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: Streptomyces venezuelae


text: public

text: ArrayExpress

characteristic: description

text: deletion of whiB

text: Streptomyces venezuelae

text: Streptomyces venezuelae

text: Streptomyces venezuelae


E-MTAB-10674:Z28 eluate 1

text: ZMBH

text: public

text: E-MTAB-10674:Z28 eluate 1

text: ArrayExpress

text: Lister 427

characteristic: cell line

text: Protocols: TAP Purification, unbound and eluate fractions were collected Trizol Ilumina kit

text: bloodstream form

characteristic: developmental stage

text: Nagana

characteristic: disease

characteristic: genotype

text: Trypanosoma brucei brucei

characteristic: organism

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Z28 eluate 1


E-MTAB-10674:Z28 eluate 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ZMBH

text: public

text: E-MTAB-10674:Z28 eluate 2

text: ArrayExpress

text: Lister 427

text: bloodstream form

text: Nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

characteristic: organism part

text: Trypanosoma brucei brucei

text: Z28 eluate 2


E-MTAB-10674:Z28 eluate 3

characteristic: External Id

text: ZMBH

characteristic: INSDC center name

text: public

text: E-MTAB-10674:Z28 eluate 3

text: ArrayExpress

text: Lister 427

text: bloodstream form

text: Nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Z28 eluate 3

characteristic: title


E-MTAB-10674:Z28 unbound 1

text: ZMBH

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10674:Z28 unbound 1

text: ArrayExpress

text: Lister 427

text: bloodstream form

text: Nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Z28 unbound 1


E-MTAB-10674:Z28 unbound 2

text: ZMBH

text: public

characteristic: SRA accession

text: E-MTAB-10674:Z28 unbound 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Lister 427

text: bloodstream form

text: Nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Z28 unbound 2


E-MTAB-10674:Z28 unbound 3

text: ZMBH

text: public

text: E-MTAB-10674:Z28 unbound 3

text: ArrayExpress

text: Lister 427

characteristic: cell line

characteristic: description

text: bloodstream form

characteristic: developmental stage

text: Nagana

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: whole organism

text: Trypanosoma brucei brucei

text: Z28 unbound 3


text: UCSC

text: public

text: Genomics Institute, University of California, Santa Cruz, 1156 High Street, MS Genomics Institute, Santa Cruz CA 95064, USA

characteristic: collecting institution

characteristic: collection date

text: Maximilian Haeussler

characteristic: collector name

text: USA

characteristic: geographic location (country and/or sea)

text: Santa Cruz, CA

characteristic: geographic location (region and locality)

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: Molecular surveillance of SARS-CoV-2


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: title


text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: organism

characteristic: sample capture status


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Health Services Laboratories

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


text: public

tag: Namespace:Institute of Cancer Sciences University of Glasgow

text: 20 to 30

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mature gamma-delta T cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Gamma delta T cells were sorted by FACS (DAPI-CD3+TCRD+) from the lungs of tumor-naive or mammary tumor-bearing K14-Cre;Brca1F/F;Trp53F/F mice. .bcl2 file to FASTQ using cellranger-mkfastq Chromium 10X v2 Chromium 10X v2

text: adult

characteristic: developmental stage

text: metastatic mammary tumor

characteristic: disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: lung

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

text: FVB/N

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Institute of Cancer Sciences University of Glasgow

characteristic: INSDC center name

text: public

text: 20 to 30

text: ArrayExpress

text: mature gamma-delta T cell

text: house mouse

characteristic: description

text: adult

text: metastatic mammary tumor

text: Mus musculus

characteristic: organism

text: Mus musculus

text: lung

text: Mus musculus

text: female

text: FVB/N


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 20 to 30

characteristic: age

text: ArrayExpress

characteristic: broker name

text: mature gamma-delta T cell

text: house mouse

text: adult

text: normal

text: Mus musculus

text: Mus musculus

text: lung

text: Mus musculus

text: female

text: FVB/N


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

text: SIB

text: Bioanalytika AG, Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Tim Roloff, Madlen Stange, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Adrian Härri, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SZ

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