COG-UK/PHWC-PYGEPA

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: COG-UK/PHWC-PYGEPA

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: Wales

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

text: COG-UK/PHWC-PYGEPA

characteristic: title

text: not provided

characteristic: virus identifier


status: PUBLIC

tag: attribute

text: public

characteristic: SRA accession

tag: Namespace:Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: receipt date

text: active surveillance in response to outbreak

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Quadram Institute Bioscience

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Quadram Institute Bioscience

text: COVID-19 Genomics UK Consortium

text: Quadram Institute Bioscience

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: sample capture status

text: not provided

characteristic: title

text: not provided

characteristic: virus identifier


text: public

tag: Namespace:Department of Pathology, University of Cambridge

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: COVID-19 Genomics UK Consortium

text: not provided

text: not provided

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

text: Human

text: not provided

text: not provided

text: not provided

characteristic: organism

text: not provided

characteristic: serotype (required for a seropositive sample)

text: not provided


text: public

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: not provided

text: not provided

characteristic: host health state

text: Human

text: not provided

text: not provided

text: not provided

characteristic: receipt date

characteristic: sample capture status

text: not provided

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: SIB

text: GHOL, CH-1260 Nyon, Switzerland

text: Trestan Pillonel, Damien Jacot, Sébastien Aeby, Gilbert Greub, Claire Bertelli

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN2675/2021

characteristic: isolate


text: Laboratory of genomics and metagenomics, Institute of Microbiology, University Hospital Centre and University of Lausanne, Switzerland

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN5260/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN5263/2021

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collecting institution

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-CHUV-GEN5264/2021

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: SIB

text: CHUV, CH-1011 Lausanne, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN5265/2021

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: ICH-RIVIERA, CH-1847 Rennaz, Switzerland

text: Switzerland

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-CHUV-GEN2677/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

text: Portugal

characteristic: country

characteristic: description

text: yes

characteristic: host associated

text: Listeria monocytogenes

text: Listeria monocytogenes

text: clinical

characteristic: source

text: Homo sapiens

characteristic: specific host


characteristic: ENA-LAST-UPDATE

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

text: public

characteristic: collection date

text: Portugal

text: yes

text: Listeria monocytogenes

characteristic: organism

text: Listeria monocytogenes

text: clinical

text: Homo sapiens


E-MTAB-10597:Sample 1

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10597:Sample 1

tag: Namespace:Department of Genetics,  Universidad de Cordoba, Campus Rabanales,  Cordoba, Spain

text: ArrayExpress

characteristic: broker name

text: Protocols: Samples were collected at the desired timepoints from infected root tissues of tomato plants or in culture grown fungal mycelium. The samples were flash frozen in Liq N2. Infection protocol is as described in the linked Manuscript. RNA was isolated using the Qiagen Total RNA extraction kit. TruSeq RNA Library Preparation Kit (Illumina, USA) was used to build the libraries according to the manufacturer’s protocol.

text: infected root tissues of tomato plants

characteristic: growth condition

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

characteristic: organism part

text: Fusarium oxysporum

text: Sample 1


E-MTAB-10597:Sample 11

text: Department of Genetics, Universidad de Cordoba, Campus Rabanales, Cordoba, Spain

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10597:Sample 11

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 11

characteristic: title


E-MTAB-10597:Sample 12

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10597:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: description

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 12


E-MTAB-10597:Sample 10

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10597:Sample 10

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 10


E-MTAB-10597:Sample 13

text: public

text: E-MTAB-10597:Sample 13

text: ArrayExpress

text: mycelia grown in culture

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 13


E-MTAB-10597:Sample 14

text: public

text: E-MTAB-10597:Sample 14

text: ArrayExpress

text: mycelia grown in culture

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 14


E-MTAB-10597:Sample 2

text: public

text: E-MTAB-10597:Sample 2

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 2


E-MTAB-10597:Sample 3

text: public

text: E-MTAB-10597:Sample 3

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 3


E-MTAB-10597:Sample 4

text: public

text: E-MTAB-10597:Sample 4

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 4


E-MTAB-10597:Sample 5

text: public

text: E-MTAB-10597:Sample 5

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 5


E-MTAB-10597:Sample 6

text: public

text: E-MTAB-10597:Sample 6

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 6


E-MTAB-10597:Sample 7

text: public

text: E-MTAB-10597:Sample 7

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 7


E-MTAB-10597:Sample 8

text: public

text: E-MTAB-10597:Sample 8

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 8


E-MTAB-10597:Sample 9

text: public

text: E-MTAB-10597:Sample 9

text: ArrayExpress

text: infected root tissues of tomato plants

text: Fusarium oxysporum

text: Fusarium oxysporum

text: mycelium

text: Fusarium oxysporum

text: Sample 9


SAMI00000010-fastq for DNA methylation

text: University of Delhi

text: public

text: SAMI00000010-fastq for DNA methylation

tag: Namespace:University of Delhi

text: IBDC

text: rice

characteristic: common name

text: India

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: control

characteristic: isolation and growth condition

text: Oryza sativa

text: reproduction

characteristic: plant developmental stage

text: flag leaf

characteristic: plant structure

text: Oryza sativa

text: fastq for DNA methylation


characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: COPO

characteristic: broker name

text: ALISON HANSON

characteristic: collected by

text: COLUMBIA UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: green hydra

text: USA

unit: m

characteristic: geographic location (depth)

unit: DD

text: Massachusetts|Falmouth|Morse Pond

characteristic: geographic location (region and locality)

text: Freshwater

characteristic: habitat

text: ROBERT STEELE

characteristic: identified by

text: UNIVERSITY OF CALIFORNIA--IRVINE

text: adult

characteristic: lifestage

text: Hydra viridissima

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Hydra viridissima

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: c728eab5-e1b8-49a6-816b-e306ff62ee5e-ASG-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: giant Caribbean anemone

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Broward County|Fort Lauderdale

text: Florida reef; Limestone ledge

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Condylactis gigantea

text: WHOLE ORGANISM

text: ASG

text: Condylactis gigantea

text: NOT COLLECTED

text: d4b77606-f977-48c7-95b4-5f8fa167a182-ASG-specimen

characteristic: title


text: Nova Southeastern University

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: JOSE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: giant barrel sponge

text: USA

characteristic: geographic location (depth)

text: Florida|Fort Lauderdale

characteristic: geographic location (region and locality)

text: Florida reef; Limestone ledge

characteristic: habitat

text: JOSE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Xestospongia muta

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Xestospongia muta

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

characteristic: specimen voucher

text: f0768a62-8131-4f44-a8a9-109b6eeda3c2-ASG-specimen

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: giant barrel sponge

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Fort Lauderdale

text: Florida reef; Limestone ledge

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Xestospongia muta

text: WHOLE ORGANISM

text: ASG

text: Xestospongia muta

text: NOT COLLECTED

text: Y, in ethanol

text: 706bd633-be8c-4da4-9aff-0aba4eba159c-ASG-specimen

characteristic: title


text: Nova Southeastern University

text: JoeLopez NSU22701

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: ALISON HANSON

characteristic: collected by

text: COLUMBIA UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: green hydra

text: USA

characteristic: geographic location (depth)

text: Massachusetts|Falmouth|Morse Pond

characteristic: geographic location (region and locality)

text: Freshwater

characteristic: habitat

text: ROBERT STEELE

characteristic: identified by

text: UNIVERSITY OF CALIFORNIA--IRVINE

text: adult

characteristic: lifestage

text: Hydra viridissima

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Hydra viridissima

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

text: 63400f4f-f68a-45e6-88d9-c4af19fdf7e7-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: JoeLopez NSU22701

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: ALISON HANSON

characteristic: collected by

text: COLUMBIA UNIVERSITY

text: green hydra

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Massachusetts|Falmouth|Morse Pond

text: Freshwater

text: ROBERT STEELE

text: UNIVERSITY OF CALIFORNIA--IRVINE

text: adult

text: Hydra viridissima

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Hydra viridissima

text: NOT COLLECTED

text: NOT COLLECTED

text: N

text: 0124b1a8-197f-40bd-ba4e-5b4c1b6c418b-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Nova Southeastern University

text: JoeLopez NSU22701

text: EarlhamInstitute

text: public

text: COPO

text: ALISON HANSON

text: COLUMBIA UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: green hydra

text: USA

characteristic: geographic location (depth)

text: Massachusetts|Falmouth|Morse Pond

characteristic: geographic location (region and locality)

text: Freshwater

characteristic: habitat

text: ROBERT STEELE

characteristic: identified by

text: UNIVERSITY OF CALIFORNIA--IRVINE

text: adult

characteristic: lifestage

text: Hydra viridissima

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Hydra viridissima

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: NOT COLLECTED

characteristic: specimen voucher

text: N

characteristic: symbiont

text: a48649a0-fc6f-44bc-b491-34384c788107-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: JoeLopez NSU0022801

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: JOSE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

text: giant Caribbean anemone

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Broward County|Fort Lauderdale

text: Florida reef; Limestone ledge

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Condylactis gigantea

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Condylactis gigantea

text: NOT COLLECTED

text: N

text: cb0167f6-c430-457d-800a-55c6bbb6ccd0-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Nova Southeastern University

text: JoeLopez NSU0022801

text: EarlhamInstitute

text: public

text: COPO

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: giant Caribbean anemone

text: USA

characteristic: geographic location (depth)

text: Florida|Broward County|Fort Lauderdale

characteristic: geographic location (region and locality)

text: Florida reef; Limestone ledge

characteristic: habitat

text: JOSE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Condylactis gigantea

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Condylactis gigantea

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: 8036fa92-ea0b-42b7-90be-61a938f73208-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: JoeLopez NSU0022801

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: JOSE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

text: giant Caribbean anemone

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Broward County|Fort Lauderdale

text: Florida reef; Limestone ledge

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Condylactis gigantea

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Condylactis gigantea

text: NOT COLLECTED

text: N

text: 26d5aad8-ceee-41e5-90df-a6010c9d1c6a-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Nova Southeastern University

text: JoeLopez NSU0022801

text: EarlhamInstitute

text: public

text: COPO

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: giant Caribbean anemone

text: USA

characteristic: geographic location (depth)

text: Florida|Broward County|Fort Lauderdale

characteristic: geographic location (region and locality)

text: Florida reef; Limestone ledge

characteristic: habitat

text: JOSE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Condylactis gigantea

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Condylactis gigantea

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: ca972614-3ff3-4e7d-943f-82ad00db9014-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: JoeLopez NSU23301

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: JOSE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

text: giant barrel sponge

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Fort Lauderdale

text: Florida reef; Limestone ledge

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Xestospongia muta

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Xestospongia muta

text: NOT COLLECTED

text: N

text: e22eb748-50eb-4d52-9653-b3a4b8566619-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Nova Southeastern University

text: JoeLopez NSU23301

text: EarlhamInstitute

text: public

text: COPO

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: giant barrel sponge

text: USA

characteristic: geographic location (depth)

text: Florida|Fort Lauderdale

characteristic: geographic location (region and locality)

text: Florida reef; Limestone ledge

characteristic: habitat

text: JOSE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Xestospongia muta

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Xestospongia muta

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

characteristic: specimen voucher

text: N

characteristic: symbiont

text: 852aaf4f-7c88-47b4-94f2-5fa2b8fb736d-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Nova Southeastern University

characteristic: GAL

text: JoeLopez NSU23302

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

characteristic: broker name

text: JOSE LOPEZ

characteristic: collected by

text: NOVA SOUTHEASTERN UNIVERSITY

text: giant barrel sponge

characteristic: common name

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Florida|Fort Lauderdale

text: Florida reef; Limestone ledge

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

text: Xestospongia muta

text: **OTHER SOMATIC ANIMAL TISSUE**

text: ASG

text: Xestospongia muta

text: NOT COLLECTED

text: Y, in ethanol

text: N

text: fc256725-df2a-4255-9af0-e9ddd484ed94-asg

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Nova Southeastern University

text: JoeLopez NSU23302

text: EarlhamInstitute

text: public

text: COPO

text: JOSE LOPEZ

text: NOVA SOUTHEASTERN UNIVERSITY

characteristic: collecting institution

characteristic: collection date

text: giant barrel sponge

text: USA

characteristic: geographic location (depth)

text: Florida|Fort Lauderdale

characteristic: geographic location (region and locality)

text: Florida reef; Limestone ledge

characteristic: habitat

text: JOSE LOPEZ

characteristic: identified by

text: NOVA SOUTHEASTERN UNIVERSITY

text: adult

characteristic: lifestage

text: Xestospongia muta

characteristic: organism

text: **OTHER SOMATIC ANIMAL TISSUE**

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Xestospongia muta

text: NOT COLLECTED

characteristic: sex

characteristic: specimen id

text: Y, in ethanol

characteristic: specimen voucher

text: N

characteristic: symbiont

text: e1054732-d791-47d9-8069-e01fd7ac70c0-asg

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: Submitter Id

text: Science Park of Comenius University of Bratislava

characteristic: broker name

text: Public Health Authority of the Slovak Republic, Trnavská cesta 52, 826 45 Bratislava, Slovakia

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

unit: year

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratory of Genomics and Bioinformatics, Comenius University Science Park

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

characteristic: organism


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:CAU zu Kiel Botanical Institute, Botanical Genetics and Molecular Biology

text: ArrayExpress

text: Protocols: All samples are lab strains, FGSC#6103 obtained from fungal genetics stocks center, knock out and over expressing strains created by our lab. Fungi were cultivated in VMM at 25°C, 150 rpm until conidiospore germination (2, 4 h) or mycelia formation (4 days). No treatment was investigated. RNA extraction with peqGold Trizol/Trifast according to manufacturer's description for tissue samples. made by company (GATC and Arraystar)

characteristic: description

text: germinating conidiospore

characteristic: developmental stage

text: Bem46 overexpression

characteristic: genotype

text: Liquid medium, 25 degrees, 150rpm

characteristic: growth condition

text: Neurospora crassa

text: Neurospora crassa

text: Neurospora crassa

characteristic: strain

characteristic: title


text: CAU zu Kiel Botanical Institute, Botanical Genetics and Molecular Biology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: germinating conidiospore

text: Bem46 overexpression

text: Liquid medium, 25 degrees, 150rpm

text: Neurospora crassa

characteristic: organism

text: Neurospora crassa

text: Neurospora crassa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: germinating conidiospore

text: wild type genotype

text: Liquid medium, 25 degrees, 150rpm

text: Neurospora crassa

text: Neurospora crassa

text: Neurospora crassa


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: mycelium

text: Bem46 knockout

text: Liquid medium, 25 degrees, 150rpm

text: Neurospora crassa

text: Neurospora crassa

text: Neurospora crassa


text: public

text: ArrayExpress

characteristic: description

text: mycelium

characteristic: developmental stage

text: Bem46 overexpression

text: Liquid medium, 25 degrees, 150rpm

text: Neurospora crassa

text: Neurospora crassa

text: Neurospora crassa


text: public

text: ArrayExpress

text: mycelium

text: wild type genotype

characteristic: genotype

text: Liquid medium, 25 degrees, 150rpm

characteristic: growth condition

text: Neurospora crassa

text: Neurospora crassa

text: Neurospora crassa


text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: description

text: United Kingdom

text: Wales

text: Human

characteristic: organism


text: TEL AVIV UNIVERSITY

text: public

tag: Namespace:TEL AVIV UNIVERSITY

text: ArrayExpress

text: Caspofungin

characteristic: compound

text: Protocols: Strains were maintained at -80˚C. Strains were streaked on YPD plates. The plates were incubated at 37˚C overnight. Then several colonies were picked up and suspended in DDW. Cell density was adjusted to 10,000 cells/ml, then 100µl of cell suspension was plated on YPD plates. The plates were incubated at 37˚C overnight. Colonies were picked up and suspended in DDW, then cell pellets were obtained by centrifuging at highest speed for 1min. We used the phenol-chloroform method to extract Genomic DNA. Cell pellets were suspended in 200µl of lysis buffer, add 100µl of acid washed glass beads, and 0,2ml phenol:chloroform:isoamyl alcohol (25:24:1). Vortex for 30min at 4˚C. Add 200µl TE pH7.5. Centrifuge for 5min at maximum speed. Transfer aqueous layer to a new 1.5ml EP tube. Add 1ml 100% ethanol. Precipitate 1h at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard the supernatant. Add 400µl TE pH 7.5. Add 3ul of RNase A (10mg/ml). Incubate at 37˚C for 30min. Add 10µl of 3M NaOAc and 1ml of 100% ethanol. Mix by inversion. Precipitate 30min at -20˚C. Pellet DNA by centrifuging for 10min at maximum speed. Discard supernatant. Air-dry the pellet overnight. Resuspend in 50µl water. 1µg Genomic DNA was randomly fragmented by Covaris, followed by fragments selection by Agencourt AMPure XP-Medium kit to an average size of 200~400 bp. Selected fragments were end repaired and 3\adenylate, then the adaptors were ligated to the end of these 3\adenylate fragments. The products were amplified by PCR and purified by the Agencourt AMPure XP-Medium kit. The purified double stranded PCR products were heat denatured to single strand, then circularised by the splint oligo sequence. The single strand circle DNA (ssCirDNA) were formatted as the final library and qualified by QC.

unit: nanogram per millilitre

characteristic: dose

text: mutant genotype

characteristic: genotype

text: Candida auris

text: [Candida] auris

text: Caspofungin resistant

characteristic: phenotype

text: [Candida] auris

text: clade III isolate B12039

characteristic: strain


text: TEL AVIV UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: wild type genotype

text: Candida auris

text: [Candida] auris

text: wild type

text: [Candida] auris

text: clade III isolate B12039

text: Parent

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Public Health Authority of the Slovak Republic

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Public Health Authority of the Slovak Republic

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

characteristic: broker name

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Nasopharyngeal swab

characteristic: organism


text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Organ - Lungs

characteristic: isolation source-host associated

characteristic: sample capture status


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

text: female

text: RNA

text: Organ

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: not provided

characteristic: collector name

characteristic: common name

text: Slovakia

characteristic: geographic location (country and/or sea)

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

text: RNA

text: Nasopharyngeal swab


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: not provided

text: Slovakia

text: Human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

characteristic: sample capture status


name: SAMI00000013-RNA-Seq of CLN leaf under heat stress conditions

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

tag: Namespace:National Institute of Plant Genome Research

characteristic: Submitter Id

text: one month

characteristic: age

text: IBDC

characteristic: broker name

text: tomato

characteristic: cultivar

characteristic: description

text: one month old

characteristic: dev stage

text: heat stress

characteristic: environmental stress

text: temperature

characteristic: experimental factor 1

characteristic: genotype

text: heat stress

characteristic: growth condition

text: Solanum lycopersicum

characteristic: organism

text: leaf

characteristic: organism part

text: wilting

characteristic: phenotype

text: The 1-month-old CLN (tolerant) plants were acclimated to gradual increase in temperature from 26 �C to 45 �C for 4 h and then exposed to 45 �C for 4.5 h, followed by leaf tissue collection. High-quality RNA isolated from leaf was used to construct paired-end RNA-Seq libraries and sequenced on Illumina platform with three biological replicates each from control and HS conditions for CLN and CA4. High-quality 75 bp paired-end raw reads were generated.

characteristic: protocol

characteristic: replicate

characteristic: sampling time point

text: Solanum lycopersicum

characteristic: time

characteristic: title


E-MTAB-10629:basal 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Walther Straub Institut, LMU, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10629:basal 1

tag: Namespace:Walther Straub Institut, LMU, Germany

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: house mouse

characteristic: common name

text: Protocols: RNAlater 0.1 mM glucose glucose withdrawal RNeasy Mini Kit Quiagen TrueSeq stranded mRNA HT kit from Illumina

text: Mus musculus

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: basal 1


E-MTAB-10629:basal 2

text: Walther Straub Institut, LMU, Germany

text: public

text: E-MTAB-10629:basal 2

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: Mus musculus

characteristic: organism

text: Mus musculus

text: hypothalamus

characteristic: organism part

text: Mus musculus

text: basal 2


E-MTAB-10629:basal 3

text: Walther Straub Institut, LMU, Germany

text: public

text: E-MTAB-10629:basal 3

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: basal 3

characteristic: title


E-MTAB-10629:glucose 1

characteristic: ENA-CHECKLIST

text: Walther Straub Institut, LMU, Germany

text: public

text: E-MTAB-10629:glucose 1

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: glucose 1


E-MTAB-10629:glucose 2

characteristic: ENA-FIRST-PUBLIC

text: Walther Straub Institut, LMU, Germany

text: public

text: E-MTAB-10629:glucose 2

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: glucose 2


E-MTAB-10629:glucose 3

characteristic: ENA-LAST-UPDATE

text: Walther Straub Institut, LMU, Germany

text: public

text: E-MTAB-10629:glucose 3

text: ArrayExpress

text: house mouse

text: Mus musculus

text: Mus musculus

text: hypothalamus

text: Mus musculus

text: glucose 3


characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Cambridge

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Cambridge by Rob Howes, The Lighthouse Lab in Cambridge and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

text: Wales

text: Human

characteristic: host scientific name

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

characteristic: broker name

text: Health Services Laboratories

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Health Services Laboratories

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:CENTER FOR BIOTECHNOLOGY, BIELEFELD UNIVERSITY

text: Evangelisches Klinikum Bethel, Institut für Laboratoriumsmedizin, Mikrobiologie und Hygiene, Bielefeld, Germany

text: Christiane Scherer

characteristic: collector name

text: SARS-CoV-2 sample with a 168 bp deletion in ORF8

text: Germany

text: North-Rhine Westphalia, Bielefeld

text: human

characteristic: host common name

text: restricted access

characteristic: host health state

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