text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Thricops semicinereus

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Thricops semicinereus

text: NOT COLLECTED

characteristic: specimen id

text: cbd9374c-5e89-4e38-aa36-cbdf9a77b949-dtol-specimen


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

unit: m

unit: DD

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Empis aestiva

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Empis aestiva

text: NOT COLLECTED

characteristic: sex

text: 90571a8e-d1e7-49ed-860d-9990c7232855-dtol-specimen

characteristic: title

characteristic: tolid


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Anthomyia liturata

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Anthomyia liturata

text: NOT COLLECTED

characteristic: specimen id

text: 172dd295-2deb-435e-91b4-bbe1170c2c14-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Tricholauxania praeusta

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Tricholauxania praeusta

text: NOT COLLECTED

characteristic: sex

text: c46f9ac6-e313-4bda-b073-d8ba7f15f14c-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Pollenia amentaria

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Pollenia amentaria

text: NOT COLLECTED

text: 2c0413e7-a16b-49d0-9b0a-8b10721e70db-dtol-specimen

characteristic: title

characteristic: tolid

type: derived from


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Toxoneura trimacula

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Toxoneura trimacula

text: NOT COLLECTED

characteristic: specimen id

text: 588a28b5-558c-45c1-ad51-4a23725c4846-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Eupeodes latifasciatus

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Eupeodes latifasciatus

text: NOT COLLECTED

characteristic: sex

text: 03a485d0-6960-4cf7-89b8-5d0c225b6ffd-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Athalia circularis

text: WHOLE ORGANISM

text: DTOL

text: Athalia circularis

text: NOT COLLECTED

text: 17ee73af-036c-4c26-8358-5e41ec6d1574-dtol-specimen

characteristic: title

characteristic: tolid


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Protocalliphora azurea

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Protocalliphora azurea

text: NOT COLLECTED

characteristic: specimen id

text: fed053e4-d368-40ea-9665-2914d4049581-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Bellardia pandia

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Bellardia pandia

text: NOT COLLECTED

characteristic: sex

text: d3878305-81b4-44f2-9727-24df1756ab2b-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Platycheirus angustatus

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Platycheirus angustatus

text: NOT COLLECTED

text: 0fe39dce-2cce-403b-bc6d-d533b5d99b90-dtol-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Phasia barbifrons

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Phasia barbifrons

text: NOT COLLECTED

characteristic: specimen id

text: a5319d68-e3d8-4809-b154-5adab7b6af91-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Opomyza petrei

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Opomyza petrei

text: NOT COLLECTED

characteristic: sex

text: 84e5821f-451f-4f80-afa5-992928e69f66-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Exorista rustica

text: WHOLE ORGANISM

text: DTOL

text: Exorista rustica

text: NOT COLLECTED

text: f20e2e0d-e6cb-4bff-8fba-7b373f5ef179-dtol-specimen

characteristic: title

characteristic: tolid


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Adia cinerella

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Adia cinerella

text: NOT COLLECTED

characteristic: specimen id

text: 5c03c144-b8c6-4cd9-9bcd-de5ac010e24a-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Cheilosia scutellata

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Cheilosia scutellata

text: NOT COLLECTED

characteristic: sex

text: 38374e68-27e2-412e-83e3-99553b9c4304-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Muscina levida

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Muscina levida

text: NOT COLLECTED

text: 90333045-620a-41a7-a719-902e3fe460de-dtol-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Lophosceles cinereiventris

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Lophosceles cinereiventris

text: NOT COLLECTED

characteristic: specimen id

text: 2cadbc11-e5e5-4b85-a138-92397de80f62-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Bicellaria vana

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Bicellaria vana

text: NOT COLLECTED

characteristic: sex

text: f304a636-22ba-4488-92d1-95098c52cbb3-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Helina evecta

text: WHOLE ORGANISM

text: DTOL

text: Helina evecta

text: NOT COLLECTED

text: bbf9f8fa-5456-46c0-ab6e-d39ee1f49d8b-dtol-specimen

characteristic: title

characteristic: tolid


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Calythea pratincola

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Calythea pratincola

text: NOT COLLECTED

characteristic: specimen id

text: 8f1d63ee-e91e-4555-b18e-8bbef620ff93-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Chrysogaster solstitialis

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Chrysogaster solstitialis

text: NOT COLLECTED

characteristic: sex

text: 0b39f758-431b-4959-8936-2470fae9eb83-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Sarcophaga nigriventris

characteristic: organism

text: WHOLE ORGANISM

text: DTOL

text: Sarcophaga nigriventris

text: NOT COLLECTED

text: a9dcd25e-a6c0-4092-92b1-76613e41899a-dtol-specimen

characteristic: title

characteristic: tolid


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Oxford

text: NOT PROVIDED

text: EarlhamInstitute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Steven Falk

text: University of Oxford

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Berkshire | Wytham woods

text: Woodland

text: Steven Falk

text: University of Oxford

text: adult

text: Eurithia anthophila

text: WHOLE ORGANISM

text: DTOL

characteristic: project name

text: Eurithia anthophila

text: NOT COLLECTED

characteristic: specimen id

text: d72bded8-b647-48a1-a644-9b90e0467b27-dtol-specimen


text: University of Oxford

characteristic: GAL

text: NOT PROVIDED

text: EarlhamInstitute

text: public

text: COPO

characteristic: broker name

text: Steven Falk

characteristic: collected by

text: University of Oxford

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Berkshire | Wytham woods

characteristic: geographic location (region and locality)

text: Woodland

characteristic: habitat

text: Steven Falk

characteristic: identified by

text: University of Oxford

text: adult

characteristic: lifestage

text: Lonchoptera lutea

characteristic: organism

text: WHOLE ORGANISM

characteristic: organism part

text: DTOL

text: Lonchoptera lutea

text: NOT COLLECTED

characteristic: sex

text: ff7d3a43-e9b9-4759-8dd2-74db084bc8b5-dtol-specimen


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NETHERLANDS CANCER INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NETHERLANDS CANCER INSTITUTE

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: Protocols: Cells were seeded in 150-mm cell culture dishes and were treated with alisertib or etoposide for 7 days. Senescent cells were subsequently cultured for 24 hours without drug. Control cells were grown in 150-mm cell culture dishes and were harvested at 80% confluency. Total RNA was isolated using the RNeasy Mini Kit (74106, Qiagen), including an on-column DNase digestion (79254, Qiagen), according to the manufactures instructions. Quality and quantity of the total RNA was assessed by the 2100 Bioanalyzer using a Nano chip (Agilent, Santa Clara, CA). Total RNA samples having RIN>8 were subjected to library generation. Strand-specific libraries were generated using the TruSeq Stranded mRNA sample preparation kit (Illumina Inc., San Diego, RS-122-2101/2) according to the manufacturer's instructions (Illumina, Part # 15031047 Rev. E). Briefly, polyadenylated RNA from intact total RNA was purified using oligo-dT beads. Following purification the RNA was fragmented, random primed and reverse transcribed using SuperScript II Reverse Transcriptase (Invitrogen, part # 18064-014) with the addition of Actinomycin D. Second strand synthesis was performed using Polymerase I and RNaseH with replacement of dTTP for dUTP. The generated cDNA fragments were 3' end adenylated and ligated to Illumina Paired-end sequencing adapters and subsequently amplified by 12 cycles of PCR. The libraries were analyzed on a 2100 Bioanalyzer using a 7500 chip (Agilent, Santa Clara, CA), diluted and pooled equimolar into a multiplex sequencing pool.

characteristic: description

text: non-small cell lung carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: sequencing batch

characteristic: title


text: NETHERLANDS CANCER INSTITUTE

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: colorectal carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: NETHERLANDS CANCER INSTITUTE

text: public

text: ArrayExpress

text: human

text: hepatocellular carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NETHERLANDS CANCER INSTITUTE

text: public

text: ArrayExpress

text: LoVo

text: human

text: colorectal carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: NETHERLANDS CANCER INSTITUTE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: estrogen-receptor positive breast cancer

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: NETHERLANDS CANCER INSTITUTE

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: triple-negative breast cancer

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


text: NETHERLANDS CANCER INSTITUTE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: RKO

text: human

text: colorectal carcinoma

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


E-MTAB-9973:DEN 1month Tid1KO-1

text: public

text: E-MTAB-9973:DEN 1month Tid1KO-1

tag: Namespace:Liver Cancer Program, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA

unit: month

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: Protocols: Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions.

text: adult

characteristic: developmental stage

text: non-alcoholic fatty liver disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: DEN 1month Tid1KO-1


E-MTAB-9973:DEN 1month Tid1KO-2

characteristic: ENA-CHECKLIST

text: Liver Cancer Program, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA

text: public

text: E-MTAB-9973:DEN 1month Tid1KO-2

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: description

text: adult

text: non-alcoholic fatty liver disease

characteristic: disease

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: DEN 1month Tid1KO-2

characteristic: title


E-MTAB-9973:DEN 1month WT-1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9973:DEN 1month WT-1

text: ArrayExpress

text: house mouse

text: adult

text: non-alcoholic fatty liver disease

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: DEN 1month WT-1


E-MTAB-9973:DEN 1month WT-2

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9973:DEN 1month WT-2

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: non-alcoholic fatty liver disease

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: DEN 1month WT-2


E-MTAB-9973:DEN 3month Tid1KO

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-9973:DEN 3month Tid1KO

text: ArrayExpress

characteristic: broker name

text: house mouse

text: adult

text: non-alcoholic fatty liver disease

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: DEN 3month Tid1KO


E-MTAB-9973:DEN 3month WT

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9973:DEN 3month WT

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: non-alcoholic fatty liver disease

characteristic: disease

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: DEN 3month WT

characteristic: title


E-MTAB-9974:DEN Heterozygous Tid1

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9974:DEN Heterozygous Tid1

text: ArrayExpress

text: house mouse

text: Protocols: Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers. Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers. Total RNA from tissues was prepared using TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. cDNA synthesis was performed with SuperScript III reverse transcriptase (Invitrogen) and random hexamers.

text: adult

text: hepatocellular carcinoma

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: DEN Heterozygous Tid1


E-MTAB-9974:DEN Tid1 KO

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-9974:DEN Tid1 KO

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: hepatocellular carcinoma

text: Mus musculus

text: Mus musculus

text: liver

text: Mus musculus

text: male

text: DEN Tid1 KO


E-MTAB-9974:DEN WT

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-9974:DEN WT

text: ArrayExpress

text: house mouse

text: adult

text: hepatocellular carcinoma

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: liver

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: DEN WT


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX 77030, USA

unit: day

text: ArrayExpress

text: house mouse

text: Protocols: Paired pancreatic tumor tissues and normal tissues from either kidneys or livers from six A3A PKCY and four PKCY mice were collected. DNA was isolated from the tissue specimens using the AllPrep DNA/RNA Mini Kit Whole exome sequencing was performed using the Nimblegen Mouse SeqCap EZ.

characteristic: description

text: adult

text: pancreatic cancer

characteristic: disease

text: A3A PKCY

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: female

characteristic: title


characteristic: ENA-CHECKLIST

text: Ahmed Cancer Center for Pancreatic Cancer Research, MD Anderson Cancer Center, University of Texas, Houston, TX 77030, USA

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: house mouse

text: adult

text: pancreatic cancer

text: A3A PKCY

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: pancreatic cancer

text: PKCY

characteristic: genotype

text: Mus musculus

text: Mus musculus

text: kidney

characteristic: organism part

text: Mus musculus

text: male


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: pancreatic cancer

characteristic: disease

text: PKCY

characteristic: individual

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: adult

text: pancreatic cancer

text: A3A PKCY

text: Mus musculus

characteristic: organism

text: Mus musculus

text: liver

text: Mus musculus

text: male

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: adult

characteristic: developmental stage

text: pancreatic cancer

text: A3A PKCY

text: Mus musculus

text: Mus musculus

text: pancreas

text: Mus musculus

text: male


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: adult

text: pancreatic cancer

characteristic: disease

text: A3A PKCY

characteristic: genotype

characteristic: individual

text: Mus musculus

text: Mus musculus

text: kidney

characteristic: organism part

text: Mus musculus

text: female


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: adult

text: pancreatic cancer

text: A3A PKCY

text: Mus musculus

text: Mus musculus

text: kidney

text: Mus musculus

text: male

characteristic: sex

characteristic: strain


Latent

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Latent

tag: Namespace:NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: Submitter Id

text: SCG neurons

characteristic: cell type

text: Herpes simplex virus type 1

text: HSV-1 Patton Us11gfp latently infected Rattus norvegicus SCG ex vivo culture

text: Human alphaherpesvirus 1

characteristic: organism

text: Human alphaherpesvirus 1

text: Latent infection

characteristic: title


Reactivation (20 hrs)

characteristic: External Id

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

text: public

text: Reactivation (20 hrs)

text: SCG neurons

text: Herpes simplex virus type 1

characteristic: common name

text: HSV-1 Patton Us11gfp infected Rattus norvegicus SCG ex vivo culture treated with LY294004 for 20 hrs

characteristic: description

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: Reactivating infection (20 hrs)


Reactivation (48 hrs)

characteristic: ENA-CHECKLIST

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: Reactivation (48 hrs)

text: SCG neurons

text: Herpes simplex virus type 1

text: HSV-1 Patton Us11gfp infected Rattus norvegicus SCG ex vivo culture treated with LY294004 for 48 hrs

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: Reactivating infection (48 hrs)


Reactivation (72 hrs)

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC first public

text: public

text: Reactivation (72 hrs)

text: SCG neurons

text: Herpes simplex virus type 1

text: HSV-1 Patton Us11gfp infected Rattus norvegicus SCG ex vivo culture treated with LY294004 for 72 hrs

text: Human alphaherpesvirus 1

text: Human alphaherpesvirus 1

text: Reactivating infection (72 hrs)


Uninfected

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC last update

text: public

text: Uninfected

text: SCG neurons

text: Norway rat

text: Uninfected Rattus norvegicus SCG ex vivo culture

text: Rattus norvegicus

text: Rattus norvegicus

text: Uninfected


Uninfected (+LY)

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

characteristic: INSDC status

text: Uninfected (+LY)

text: SCG neurons

text: Norway rat

text: Uninfected Rattus norvegicus SCG ex vivo culture treated with LY294004 for 20 hrs

text: Rattus norvegicus

text: Rattus norvegicus

text: Uninfected (LY-treated)


text: UNIVERSITY OF BERN

text: public

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF BERN

text: Procyclic form

text: RNA-seq performed from procyclic forms inoculated on a semi-solid surface.

text: Trypanosoma brucei brucei

text: Trypanosoma brucei brucei

text: pH taxis in trypanosomes


text: public

tag: Namespace:Department of Hematology, Erasmus University Medical Center

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: myeloblast

text: human

text: Protocols: For each replicate, a total of 120 million cells were infected with 3-4% transduction efficiency to ensure that each sgRNA is represented predominantly as a single lentiviral integration in >1000 cells. After neomycin drug selection (1 mg ml−1) for 7 days, D0 samples were obtained (5 million cells per replicate), and cells were subsequently cultured in the presence of 1 µg ml−1 doxycycline (Dox). Culture medium was exchanged every 2 days. After 5 days (d5) and 7 days (d7), about 1 million sgRNA-expressing (GFPlow) cells were sorted for each replicate using a FACS AriaII (BD Biosciences). The MUTZ3 cell lines were cultured in αMEM (HyClone) with 20% fetal calf serum (FCS) and 20% conditioned 5637 medium. The 293T were cultured in DMEM (Gibco) with 10% FCS. All cell lines were supplemented with 50 U/mL penicillin and 50 μg/mL streptomycin. Viable frozen AML cells were thawed and resuspended in IMDM medium supplemented with: 20% BIT medium (Stem cell technologies), 1x β-mercaptoethanol (1000x Life technologies), 6 µg/ml LDL (Sigma Aldrich), human IL6, IL3, G-CSF, GM-CSF at 20 ng/ml and FLT3, SCF at 50 ng/ml (Peprotech). To design a high-resolution sgRNA library for the enhancer scan, we considered all possible sgRNA target sites containing a canonical Cas9 PAM site (NGG) on both strands of the minimal 18 kb translocated region. sgRNAs containing a G in positions 1-3 of the 20nt target site were trimmed at this position to favor 20-, 19- or 18-mers (in this order of priority) containing a natural G at the 5’end as previously described (Michlits et al., 2020). For all other sgRNAs, a G was added to the 5’end (resulting in a 21-mer). Subsequently, all sgRNAs showing (1) a high number of target sites in the human genome (>5 with no mismatch, or >20 with 1 mismatch), (2) a BsmBI site (interfering with cloning), or (3) a polyA signal (interfering with packaging) were filtered out. In addition, we added a number of negative controls (82 sgRNAs targeting the AAVS1 region) as well as positive controls (5 sgRNAs targeting EVI1 as well as 313 sgRNAs covering 5 kb of the breakpoint in MUTZ3 cells). The final library of 3239 sgRNAs (Table S1) was synthesized with overhangs for PCR amplification and cloning as one oligo pool (Twist Bioscience) and cloned into the lentiviral vector sgETN as previously described (Michlits et al., 2020). The pool of 3239 sgETN-sgRNAs was transduced in triplicate into MUTZ3-EVI1-GFP. For each replicate, a total of 120 million cells were infected with 3-4% transduction efficiency to ensure that each sgRNA is represented predominantly as a single lentiviral integration in >1000 cells. After neomycin drug selection (1 mg ml−1) for 7 days, T0 samples were obtained (5 million cells per replicate), and cells were subsequently cultured in the presence of 1 µg ml−1 doxycycline (Dox). Culture medium was exchanged every 2 days. After 5 days (T5) and 7 days (T7), about 1 million sgRNA-expressing (GFPlow) cells were sorted for each replicate using a FACS AriaII (BD Biosciences). Genomic DNA from T0, T5 and T7 samples was isolated by two rounds of phenol extraction using PhaseLock tubes (5PRIME), followed by isopropanol precipitation. Deep-sequencing libraries were generated by PCR amplification of sgRNA guide strands using primers that tag the product with standard Illumina adapters and a 4 bp sample barcode in a 2 step-PCR protocol. For each sorted sample, all DNA was used as template in multiple parallel 50-μl PCR reactions, each containing 250-500 ng template, 1x AmpliTaq Gold buffer, 0.2 mM of each dNTP, 2 mM MgCl2, 0.3 μM of each primer and 1U AmpliTaq Gold (Invitrogen), which were run using the following cycling parameters: 95 °C for 10 min; 28 cycles of 95 °C for 30 s, 52 °C for 45 s and 72 °C for 30 s; 72 °C for 7 min. PCR products (367 bp) were combined for each sample and Ampure purified. For the T0 samples and a DNA-pool sample the amount of input DNA necessary to get a 1000x coverage was used as input in the PCRs. For the second PCR 10ng of input was used per PCR using the following cycling parameters: 95 °C for 10 min; 8 cycles of 95 °C for 30 s, 57 °C for 45 s and 72 °C for 30 s; 72 °C for 7 min. PCR products (448 bp) were combined for each sample and Ampure-purified. Libraries were sequenced equimolarly on an Illumina HiSeq 2500 (Illumina) by the Next Generation Sequencing Facility at Vienna BioCenter Core Facilities (VBCF), member of the Vienna BioCenter (VBC), Austria. Multiple experiments (different time points and sorted fractions) were sequenced simultaneously, each identified by a unique barcode. Genomic DNA from D0, D5 and D7 samples was isolated by two rounds of phenol extraction using PhaseLock tubes (5PRIME), followed by isopropanol precipitation. Deep-sequencing libraries were generated by PCR amplification of sgRNA guide strands using primers that tag the product with standard Illumina adapters and a 4 bp sample barcode in a 2 step-PCR protocol.

text: adult

characteristic: developmental stage

text: acute myeloid leukemia

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: bone marrow cell

characteristic: organism part

text: Homo sapiens

text: EnhancerPool


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: WAGENINGEN UNIVERSITY

text: public

tag: Namespace:WAGENINGEN UNIVERSITY

characteristic: Submitter Id

text: human gut metagenome

text: human gut metagenome

text: human gut metagenome

characteristic: organism

text: human gut metagenome


characteristic: External Id

text: Institute for research in Biomedecine

characteristic: INSDC center name

text: public

tag: Namespace:Institute for research in Biomedecine

text: iPSC

characteristic: cell type

text: human

characteristic: common name

text: Capture HiC in a 2Mb region of chromosome XII in human human induced PSC

text: Homo sapiens

text: Homo sapiens

text: Capture HiC in human induced PSC-1

characteristic: title


characteristic: ENA-CHECKLIST

text: Institute for research in Biomedecine

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: iPSC

text: human

text: Capture MNase-seq in a 2Mb region of chromosome XII in human induced PSC (5min MNase digestion)

characteristic: description

text: Homo sapiens

text: Homo sapiens

text: Capture MNase-seq in human iPSC


text: Institute for research in Biomedecine

text: public

characteristic: SRA accession

text: iPSC

text: human

text: Capture MNase-seq in a 2Mb region of chromosome XII in human induced PSC (10min MNase digestion)

text: Homo sapiens

text: Homo sapiens

text: Capture MNase-seq in human iPSC


text: Institute for research in Biomedecine

text: public

text: fibroblaste

text: human

text: Capture MNase-seq in a 2Mb region of chromosome XII in human fibroblast (10min MNase digestion)

text: Homo sapiens

text: Homo sapiens

text: Capture MNase-seq in human fibroblast


text: Institute for research in Biomedecine

text: public

text: fibroblaste

text: human

text: Capture MNase-seq in a 2Mb region of chromosome XII in human fibroblast (5min MNase digestion)

text: Homo sapiens

text: Homo sapiens

text: Capture MNase-seq in human fibroblast


text: Institute for research in Biomedecine

text: public

text: fibroblaste

text: human

text: Capture HiC in a 2Mb region of chromosome XII in human human fibroblast

text: Homo sapiens

text: Homo sapiens

text: Capture HiC in human fibroblast


text: knujmj

text: public

characteristic: collection date

text: soil

characteristic: environment (biome)

text: soil

characteristic: environment (feature)

text: soil

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Tricholoma matsutake

text: Analysis of metagenome for fungal community of soil under Tricholoma matsutake’s fruiting body.

characteristic: project name

text: Tricholoma matsutake

text: Pyrosequencing

characteristic: sequencing method

text: soil

characteristic: soil environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HANYANG UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

tag: Namespace:HANYANG UNIVERSITY

characteristic: Submitter Id

text: seawater

text: sea

text: seawater

text: South Korea

text: metagenome

text: metagenome

characteristic: organism

text: Jeju seawater microbiome

text: metagenome

text: Illumina

text: soil

text: seawater microbiome

characteristic: title


text: HANYANG UNIVERSITY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collection date

text: marine sediment

characteristic: environment (biome)

text: seafloor

characteristic: environment (feature)

text: sediment

characteristic: environment (material)

text: South Korea

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

text: metagenome

text: metagenome

text: Jeju sediment microbiome

text: metagenome

text: Illumina

text: soil

text: sediment microbiome


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:School of Biomedical Engineering, Shanghai Jiao Tong University

text: ArrayExpress

characteristic: broker name

text: AGS

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human normal GC cell line GES1 and GC cancer cell line AGS were purchased from the Chinese Academy of Sciences cell bank (Shanghai, China). All cells were cultured in RPMI-1640 medium (Gibco, USA) supplemented with 10% fetal bovine serum (FBS, Gibco, USA), penicillin (50 U/ml, Sangon, China), streptomycin (50 mg/ml, Sangon, China), at 37°C in a 5% CO2 humidified atmosphere. The lentiviral vector pLKO.1-puro-shRNA-CPSF6 was constructed for CPSF6 knockdown. 293T cells were transfected for the lentiviral production. After 48 h and 72 h, the supernatant was collected. Then AGS cells were infected by supernatant for 72 h. Finally, cells were maintained in the presence of puromycin (2mg/ml) for 1-2 weeks. Total RNA was extracted using TRIzol (Invitrogen, USA) according to the manufacturer’s instructions. Briefly, 50 μg total RNA was incubated with M280 beads, which were bound by Bio-oligo dT (20). After cDNA synthesis, the 3′UTR fragments were released by Gsu I digestion and then subjected to deep sequencing.The libraries were constructed, using NEBNext® Ultra™ II DNA Library Prep Kit and following manufacturer’s instructions.

characteristic: description

text: adult

characteristic: developmental stage

text: gastric adenocarcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: stomach

characteristic: organism part

text: CPSF6 knockdown by siRNA

characteristic: rna interference

text: Homo sapiens


characteristic: External Id

text: School of Biomedical Engineering, Shanghai Jiao Tong University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: AGS

text: epithelial cell

text: human

text: adult

text: gastric adenocarcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: stomach

text: CPSF6 knockdown by siRNA

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: AGS

characteristic: cell line

text: epithelial cell

text: human

text: adult

text: gastric adenocarcinoma

text: Homo sapiens

text: Homo sapiens

text: stomach

text: blank vector

text: Homo sapiens


text: GSC

text: public

text: Paramecium pentaurelia

text: Paramecium pentaurelia


text: GSC

text: public

text: Paramecium primaurelia

text: Paramecium primaurelia


text: GSC

text: public

text: Paramecium octaurelia

text: Paramecium octaurelia


text: GSC

text: public

text: Paramecium sonneborni

text: Paramecium sonneborni


Genome of paramecium octaurelia

text: Genoscope CEA

text: public

text: Genome of paramecium octaurelia

tag: Namespace:Genoscope CEA

text: whole genome sequencing of paramecium octaurelia

characteristic: description

text: Paramecium octaurelia

text: Paramecium octaurelia

text: Genome of paramecium octaurelia


Genome of paramecium sonneborni

text: Genoscope CEA

text: public

text: Genome of paramecium sonneborni

text: whole genome sequencing of paramecium sonneborni

text: Paramecium sonneborni

text: Paramecium sonneborni

text: Genome of paramecium sonneborni


Genome of paramecium primaurelia

text: Genoscope CEA

text: public

text: Genome of paramecium primaurelia

text: whole genome sequencing of paramecium primaurelia

text: Paramecium primaurelia

text: Paramecium primaurelia

text: Genome of paramecium primaurelia


Genome of paramecium pentaurelia

text: Genoscope CEA

text: public

text: Genome of paramecium pentaurelia

text: whole genome sequencing of paramecium pentaurelia

text: Paramecium pentaurelia

text: Paramecium pentaurelia

text: Genome of paramecium pentaurelia


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: pig

characteristic: common name

text: Sus scrofa

text: Sus scrofa

text: Lymph node

characteristic: tissue type


characteristic: External Id

text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Spleen


text: NEW YORK UNIVERSITY SCHOOL OF MEDICINE

characteristic: INSDC center name

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Lymph Node


text: GSC

characteristic: INSDC first public

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_G000000030) collected during the Tara Oceans expedition (2009-2013) at station TARA_041_DCM. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: ERS489079 (TARA_G000000030)

characteristic: sample derived from

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: Single Amplified Genome BCB_DAXI


text: GSC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: This cell was isolated using flow cytometry from a water sample (TARA_N000000268) collected during the Tara Oceans expedition (2009-2013) at station TARA_046_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: Single Amplified Genome BCB_CVCI


text: GSC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: Single Amplified Genome BCB_CVEI


text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_N000000202) collected during the Tara Oceans expedition (2009-2013) at station TARA_051_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-1D 1 TO-2020

characteristic: organism

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: Single Amplified Genome BCB_CTAI

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: GSC

text: public

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-1D 1 TO-2020

text: Single Amplified Genome BCB_CTKI


characteristic: ENA-LAST-UPDATE

text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_G000000027) collected during the Tara Oceans expedition (2009-2013) at station TARA_041_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CSKI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CTLI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CTQI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CTTI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CVHI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CVII


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CXFI


text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_G000000108) collected during the Tara Oceans expedition (2009-2013) at station TARA_047_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489303 (TARA_G000000108)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CXHI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489303 (TARA_G000000108)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CXII


text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_G000000176) collected during the Tara Oceans expedition (2009-2013) at station TARA_048_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CVVI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CXMI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CTFI


text: GSC

text: public

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-3A 1 TO-2020

text: Single Amplified Genome BCB_CTII


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_CSNI


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_CSVI


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_DANI


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_DAPI


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489303 (TARA_G000000108)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_CXDI


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_CXTI


text: GSC

text: public

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-3F 1 TO-2020

text: Single Amplified Genome BCB_CTEI


text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_X000001437) collected during the Tara Oceans expedition (2009-2013) at station TARA_023_DCM. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CRBI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CREI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CRGI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CRII


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CRNI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CRSI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CSAI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CSFI


text: GSC

text: public

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-4A 1 TO-2020

text: Single Amplified Genome BCB_CTDI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CSSI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CSXI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CVAI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489303 (TARA_G000000108)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CXKI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CXLI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CXQI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CXRI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CXSI


text: GSC

text: public

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-4B 1 TO-2020

text: Single Amplified Genome BCB_CTHI


text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_N000000008) collected during the Tara Oceans expedition (2009-2013) at station TARA_039_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS488886 (TARA_N000000008)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CVRI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS488886 (TARA_N000000008)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CVSI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CSHI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CSPI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DAQI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DAVI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DBAI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DBDI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DBEI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DBFI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DBGI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_DBHI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CTMI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CVGI


text: GSC

text: public

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CVMI


text: GSC

text: public

text: This cell was isolated using flow cytometry from a water sample (TARA_N000000268) collected during the Tara Oceans expedition (2009-2013) at station TARA_051_SUR. The water sample material was prepared on board for later detection and identification of single-cell amplified genomes (SAGs) by sequencing (SEQ) methods.

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: ERS489453 (TARA_N000000268)

text: Stramenopiles sp. MAST-4C 1 TO-2020

text: Single Amplified Genome BCB_CTBI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRFI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRHI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRMI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRPI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRTI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRVI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CRXI


text: GSC

text: public

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-4E 1 TO-2020

text: Single Amplified Genome BCB_CSCI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS488886 (TARA_N000000008)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CVQI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_DALI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_DBBI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_DBII


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CVBI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CVDI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CVFI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CVLI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CVNI


text: GSC

text: public

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: ERS489303 (TARA_G000000108)

text: Stramenopiles sp. MAST-7B 1 TO-2020

text: Single Amplified Genome BCB_CXEI


text: GSC

text: public

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: ERS489054 (TARA_G000000108)

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: Single Amplified Genome BCB_CSRI


text: GSC

text: public

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: Single Amplified Genome BCB_CTNI


text: GSC

text: public

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: Single Amplified Genome BCB_CXNI


text: GSC

text: public

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: ERS489329 (TARA_G000000176)

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: Single Amplified Genome BCB_CXPI


text: GSC

text: public

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: ERS489453 (TARA_N000000202)

text: Stramenopiles sp. MAST-9A 1 TO-2020

text: Single Amplified Genome BCB_CTGI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CSDI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS478004 (TARA_X000001437)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CSEI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489079 (TARA_G000000030)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_DASI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CSII


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489054 (TARA_G000000027)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CSTI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CTRI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CVKI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CTSI


text: GSC

text: public

text: Stramenopiles sp. MAST-11 1 TO-2020

text: ERS489280 (TARA_N000000268)

text: Stramenopiles sp. MAST-11 1 TO-2020

text: Single Amplified Genome BCB_CTPI


text: 4D Pharma Cork Limited

text: public

tag: Namespace:4D Pharma Cork Limited

characteristic: collection date

text: Virome WGS Sequences

text: Human Microbiome

characteristic: environment (biome)

text: Microbial community

characteristic: environment (feature)

text: Fecal Material

characteristic: environment (material)

text: Ireland

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: virus

characteristic: investigation type

text: human gut metagenome

text: Human Gut virome sequence reads of subjects with or without Irritable Bowel Syndrome (IBS)

characteristic: project name

text: human gut metagenome

text: sequencing by synthesis (SBS)

characteristic: sequencing method


characteristic: External Id

text: Universita degli studi di Milano

characteristic: INSDC center name

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