E-MTAB-9645:Sample 642

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 642

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 642


E-MTAB-9645:Sample 648

status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 648

text: embryonic day 6.25

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Embryos were obtained from pregnant C57BL/6 mice (crossed to C57BL/6 males) at E5.5 and E6.25 using a standard post-implantation dissection protocol as outlined in Srinivas, 2010 (PMID:21123426). To enrich for VE cells in the single-cell isolation, fluorescent membrane labelling of the VE was achieved by incubating the embryos in 0.1% CellVue Claret Far Red dye (Sigma) in Diluent-C for 5 minutes at room temperature. Up to 4 stained embryos were placed in 100µl of TrypLE (Invitrogen) dissociation reagent for 3.5 minutes and 4.5 minutes for E5.5 and E6.25 embryos respectively, at 37°C. The embryos were then mouth-pipetted up and down, for gentle mechanical dissociation using a glass capillary 10-15% larger than the size of the embryos. The dissociated cells were pooled and transferred to a 1.5mL microcentrifuge tube and the TrypLE was neutralised with an equal volume of heat inactivated FBS followed by centrifugation at 1000x g for 3 minutes at 4°C. The cells pellet were resuspended in 100µl of ice-cold HBSS with 1% FBS. DAPI was added as a live-dead indicator. Claret-labelled, live, VE cells were collected using SH800 Cell Sorter (Sony) into lysis buffer at 4°C. mRNA from E5.5 and E6.25 embryo single cell collections enriched for visceral endoderm (VE) cells, were extracted and amplified using the SMARTSeq2 protocol, with the additional inclusion of ERCC spike-in control. Multiplexed sequencing libraries were generated from cDNA using the Illumina Nextera XT protocol.

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 648

characteristic: title


E-MTAB-9645:Sample 649

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 649

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 649


E-MTAB-9645:Sample 65

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 65

text: embryonic day 5.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 65


E-MTAB-9645:Sample 656

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 656

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 656


E-MTAB-9645:Sample 659

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 659

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 659

characteristic: title


E-MTAB-9645:Sample 660

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 660

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 660


E-MTAB-9645:Sample 662

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 662

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 662


E-MTAB-9645:Sample 663

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 663

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 663


E-MTAB-9645:Sample 67

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 67

text: embryonic day 5.5

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 67

characteristic: title


E-MTAB-9645:Sample 670

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 670

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 670


E-MTAB-9645:Sample 674

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 674

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 674


E-MTAB-9645:Sample 675

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 675

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 675


E-MTAB-9645:Sample 676

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 676

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 676

characteristic: title


E-MTAB-9645:Sample 680

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 680

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 680


E-MTAB-9645:Sample 69

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 69

text: embryonic day 5.5

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 69


E-MTAB-9645:Sample 692

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 692

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 692


E-MTAB-9645:Sample 693

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 693

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 693

characteristic: title


E-MTAB-9645:Sample 696

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 696

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 696


E-MTAB-9645:Sample 697

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 697

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 697


E-MTAB-9645:Sample 698

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 698

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 698


E-MTAB-9645:Sample 699

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 699

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 699

characteristic: title


E-MTAB-9645:Sample 70

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 70

text: embryonic day 5.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 70


E-MTAB-9645:Sample 700

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 700

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 700


E-MTAB-9645:Sample 703

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 703

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 703


E-MTAB-9645:Sample 708

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 708

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 708

characteristic: title


E-MTAB-9645:Sample 71

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 71

characteristic: Submitter Id

text: embryonic day 5.5

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 71


E-MTAB-9645:Sample 710

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 710

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 710


E-MTAB-9645:Sample 718

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 718

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 718


E-MTAB-9645:Sample 721

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 721

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 721

characteristic: title


E-MTAB-9645:Sample 723

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 723

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 723


E-MTAB-9645:Sample 724

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 724

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 724


E-MTAB-9645:Sample 726

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 726

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 726


E-MTAB-9645:Sample 727

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 727

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 727

characteristic: title


E-MTAB-9645:Sample 728

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 728

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 728


E-MTAB-9645:Sample 730

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 730

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 730


E-MTAB-9645:Sample 731

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 731

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 731


E-MTAB-9645:Sample 732

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 732

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 732

characteristic: title


E-MTAB-9645:Sample 735

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 735

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 735


E-MTAB-9645:Sample 738

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 738

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 738


E-MTAB-9645:Sample 741

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 741

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 741


E-MTAB-9645:Sample 743

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 743

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 743

characteristic: title


E-MTAB-9645:Sample 745

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 745

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 745


E-MTAB-9645:Sample 747

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 747

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 747


E-MTAB-9645:Sample 748

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 748

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 748


E-MTAB-9645:Sample 749

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 749

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 749

characteristic: title


E-MTAB-9645:Sample 750

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 750

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 750


E-MTAB-9645:Sample 752

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 752

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 752


E-MTAB-9645:Sample 753

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 753

text: embryonic day 6.25

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 753


E-MTAB-9645:Sample 758

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 758

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 758

characteristic: title


E-MTAB-9645:Sample 76

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 76

characteristic: Submitter Id

text: embryonic day 5.5

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: fail

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 76


E-MTAB-9645:Sample 8

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 8

text: embryonic day 5.5

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

text: Sample 8


E-MTAB-9645:Sample 82

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 82

text: embryonic day 5.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

characteristic: sex

text: OK

characteristic: single cell well quality

text: Sample 82


E-MTAB-9645:Sample 99

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 99

characteristic: Submitter Id

text: embryonic day 5.5

text: ArrayExpress

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: fail

text: Mus musculus

text: mixed

text: OK

characteristic: strain

text: Sample 99

characteristic: title


E-MTAB-9645:Sample 109

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 109

text: embryonic day 5.5

text: ArrayExpress

text: unassigned

characteristic: cell type

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 109


E-MTAB-9645:Sample 142

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 142

text: embryonic day 5.5

characteristic: age

text: ArrayExpress

characteristic: broker name

text: unassigned

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: pass

text: Mus musculus

text: mixed

characteristic: sex

text: OK

text: Sample 142


E-MTAB-9645:Sample 19

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 19

characteristic: Submitter Id

text: embryonic day 5.5

text: ArrayExpress

text: unassigned

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: pass

text: Mus musculus

text: mixed

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 19

characteristic: title


E-MTAB-9645:Sample 386

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HELMHOLTZZENTRUM

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9645:Sample 386

text: embryonic day 6.25

text: ArrayExpress

text: unassigned

characteristic: cell type

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

characteristic: organism part

text: pass

characteristic: post analysis well quality

text: Mus musculus

text: mixed

text: OK

text: Sample 386


E-MTAB-9645:Sample 432

text: HELMHOLTZZENTRUM

text: public

text: E-MTAB-9645:Sample 432

text: embryonic day 6.25

characteristic: age

text: ArrayExpress

characteristic: broker name

text: unassigned

text: house mouse

characteristic: common name

characteristic: description

text: embryo

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: whole organism

text: pass

text: Mus musculus

text: mixed

characteristic: sex

text: OK

text: Sample 432


E-MTAB-9645:Sample 462

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: HELMHOLTZZENTRUM

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9645:Sample 462

characteristic: Submitter Id

text: embryonic day 6.25

text: ArrayExpress

text: unassigned

text: house mouse

text: embryo

text: wild type genotype

text: Mus musculus

text: Mus musculus

text: whole organism

text: pass

text: Mus musculus

text: mixed

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 462

characteristic: title


E-MTAB-9648:Sample 1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9648:Sample 1

tag: Namespace:Center for Omics Sciences, IRCCS San Raffaele Hospital

text: ArrayExpress

characteristic: cell line

text: kidney cancer cell

characteristic: cell type

text: human

text: Protocols: Cells were kept in culture according to standard tissue culture procedure. Cells were detached from plates by trypsin treatment, harvested and counted by Trypan Blue exclusion. Chromatin was collected following an already published study (doi:10.1172/JCI81040). Briefly, after addition of Complete, EDTA-free Protease Inhibitor Cocktail Tablets (Roche) and the phosphatase inhibitors sodium orthovanadate and NaF, lysates were sonicated with Bioruptor (Diagenode) (300 μL aliquots of lysates were sonicated for 10 min - medium intensity 30 sec on 30 sec off). In order to get 300-500 bp DNA fragments. 10-20 µg of ready-to-use chromatin were used for each ChIP. For each ChIP, 70 µl of Dynabeads protein G slurry (Invitrogen) were washed and incubated with 5 µg of antibody. Samples were purified with QIAquick PCR purification kit (Qiagen), following manufacturer’s recommendations. Reactions were purified using QIAquick Gel Extraction Kit (Qiagen) and eluted in 15 μL of EB buffer. 5 μL of this reaction was used as input for indexing PCR using 2X Kapa HiFi polymerase (Roche) and Nextera indexing primers (N7XX and S5XX). Libraries clean up was performed following standard procedure.

text: adult

text: cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: Sample 1


E-MTAB-9648:Sample 10

characteristic: ENA-CHECKLIST

text: Center for Omics Sciences, IRCCS San Raffaele Hospital

text: public

text: E-MTAB-9648:Sample 10

text: ArrayExpress

characteristic: broker name

text: kidney cancer cell

text: human

characteristic: common name

text: Protocols: Cells were kept in culture according to standard tissue culture procedure. Cells were detached from plates by trypsin treatment, harvested and counted by Trypan Blue exclusion. Nucleic acids were directly processed on permeabilized nuclei following standard ATAC-seq protocol (https://doi.org/10.1038/nmeth.2688) with minor modifications. Briefly, 100,000 Caki-1 cells pellets were washed in 100 μL cold 1X PBS, centrifuged for 10 min at 500 *g at 4 °C, and permeabilized in 100 μL of cold lysis buffer (10 mM Tris·Cl, pH 7.4, 10 mM NaCl, 3 mM MgCl2, 0.1% (v/v) Igepal CA-630), then centrifuged again for 10 min at 500 *g at 4 °C. Nuclei were resuspended in 100 μL of transposition mix (5x TAPS-PEG8000 buffer,10 μL of 1.39 μM of functional TnH or Tn5 transposome, water to in a final volume of 100 μL). As control, a parallel reaction was carried out on 100,000 Caki-1 cells pellets using the TDE Nextera transposase (Illumina) according to the manufacturer’s protocol (50 μL 2× TD buffer, 5 μL TDE and 45 μL nuclease-free water). Reactions were performed at 37 °C for 30 min, stopped adding SDS at a final concentration of 0.05% and incubated for 5 min at RT. Reactions were purified using QIAquick Gel Extraction Kit (Qiagen) and eluted in 15 μL of EB buffer. 5 μL of this reaction was used as input for indexing PCR using 2X Kapa HiFi polymerase (Roche) and Nextera indexing primers (N7XX and S5XX). Libraries clean up was performed following standard procedure.

characteristic: description

text: adult

characteristic: developmental stage

text: cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 10

characteristic: transposase


E-MTAB-9648:Sample 11

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9648:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 11

characteristic: title


E-MTAB-9648:Sample 12

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9648:Sample 12

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 12


E-MTAB-9648:Sample 13

characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-9648:Sample 13

text: ArrayExpress

characteristic: cell line

text: kidney cancer cell

characteristic: cell type

text: human

text: adult

text: cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: Sample 13


E-MTAB-9648:Sample 14

text: public

text: E-MTAB-9648:Sample 14

text: ArrayExpress

characteristic: broker name

text: kidney cancer cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 14


E-MTAB-9648:Sample 15

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9648:Sample 15

characteristic: Submitter Id

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 15

characteristic: transposase


E-MTAB-9648:Sample 16

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9648:Sample 16

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 16

characteristic: title


E-MTAB-9648:Sample 17

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: E-MTAB-9648:Sample 17

text: ArrayExpress

characteristic: cell line

text: kidney cancer cell

characteristic: cell type

text: human

text: adult

text: cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 17

text: Nextera


E-MTAB-9648:Sample 2

text: public

text: E-MTAB-9648:Sample 2

text: ArrayExpress

characteristic: broker name

text: kidney cancer cell

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: Sample 2


E-MTAB-9648:Sample 3

characteristic: ENA-FIRST-PUBLIC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9648:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 3


E-MTAB-9648:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-9648:Sample 4

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 4


E-MTAB-9648:Sample 5

characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

text: E-MTAB-9648:Sample 5

text: ArrayExpress

characteristic: cell line

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 5

characteristic: title


E-MTAB-9648:Sample 6

text: public

text: E-MTAB-9648:Sample 6

text: ArrayExpress

characteristic: broker name

text: kidney cancer cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 6


E-MTAB-9648:Sample 7

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-9648:Sample 7

text: ArrayExpress

text: kidney cancer cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

characteristic: organism part

text: Homo sapiens

text: Sample 7

characteristic: transposase


E-MTAB-9648:Sample 8

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-9648:Sample 8

characteristic: Submitter Id

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 8


E-MTAB-9648:Sample 9

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-9648:Sample 9

text: ArrayExpress

text: kidney cancer cell

text: human

text: adult

text: cancer

text: Homo sapiens

text: Homo sapiens

text: kidney

text: Homo sapiens

text: Sample 9


text: COLUMBIA UNIVERSITY

text: public

tag: Namespace:COLUMBIA UNIVERSITY

text: ArrayExpress

characteristic: broker name

text: T cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Tumor dissociation kits 10x Platform 10x Platform

text: colorectal cancer

text: Homo sapiens

text: Homo sapiens

text: colorectum

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: COLUMBIA UNIVERSITY

text: public

text: ArrayExpress

text: T cell

text: human

characteristic: description

text: colorectal cancer

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colorectum

text: Homo sapiens

text: May


characteristic: ENA-LAST-UPDATE

text: YANGZHOU UNIVERSITY

text: public

tag: Namespace:YANGZHOU UNIVERSITY

characteristic: collection date

text: China

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: chicken

characteristic: host scientific name

text: Campylobacter jejuni

characteristic: isolate

text: chicken

characteristic: isolation source

text: Campylobacter jejuni

text: Campylobacter jejuni

text: Campylobacter


characteristic: ENA-CHECKLIST

characteristic: External Id

text: YANGZHOU UNIVERSITY

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: China

text: farm environment

text: Campylobacter jejuni

text: farm environment

text: Campylobacter jejuni

characteristic: organism

text: Campylobacter jejuni

text: Campylobacter


characteristic: ENA-FIRST-PUBLIC

text: YANGZHOU UNIVERSITY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: China

text: healthy

text: chicken

text: Campylobacter coli

text: chicken

text: Campylobacter coli

text: Campylobacter coli

text: Campylobacter

characteristic: title


characteristic: ENA-LAST-UPDATE

text: YANGZHOU UNIVERSITY

text: public

characteristic: collection date

text: China

text: farm environment

text: Campylobacter coli

text: farm environment

text: Campylobacter coli

text: Campylobacter coli

text: Campylobacter


text: UC SANTA CRUZ

text: public

text: BY4741_terminator_test_12_17_19_pass_u2t.fastq.gz

tag: Namespace:UC SANTA CRUZ

text: baker's yeast

characteristic: common name

characteristic: description

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_09_02_19_polyA2_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_09_02_19_polyA_polyI_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_09_02_polyA1_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_09_11_19_RiboMinus_polyI_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_10_05_18_polyA_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_03_04_19_totalRNA_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_03_15_19_totalRiboNadda_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_06_19_19_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_09_25_19_polyAselected_1_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_09_25_19_polyAselected_2_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_10_01_19_polyAselected_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_10_07_18_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


text: UC SANTA CRUZ

text: public

text: Yeast_BY4741_polyI_12_14_18_flipflop_pass_u2t.fastq.gz

text: baker's yeast

text: Saccharomyces cerevisiae

text: Saccharomyces cerevisiae


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characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Twelve months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in October:Lane 4

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar SP80-3280

text: Twelve months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in October:Lane 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Twelve months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in October:Lane 6


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

characteristic: organism

text: Ten months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in August:Lane 1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

text: Ten months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in August:Lane 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar R570

text: Ten months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in August:Lane 3


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

text: Six months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in April:Lane 1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

characteristic: organism

text: Six months

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in April:Lane 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

text: Six months

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in April:Lane 3

characteristic: title


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum spontaneum

text: Ten months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum spontaneum


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum spontaneum

text: Ten months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum spontaneum


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum spontaneum

characteristic: organism

text: Ten months

text: Soil

text: Culm

text: Saccharum spontaneum


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum spontaneum

text: Twelve months

text: Soil

text: Culm

text: Saccharum spontaneum

text: Replicate 2 of sugarcane culm in October:Lane 1

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum spontaneum

text: Twelve months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum spontaneum

text: Replicate 2 of sugarcane culm in October:Lane 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum spontaneum

text: Twelve months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum spontaneum

text: Replicate 2 of sugarcane culm in October:Lane 3


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

characteristic: organism

text: Six months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in April:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

text: Six months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in April:Lane 5

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar R570

text: Six months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in April:Lane 6


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Eight months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in June:Lane 1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

characteristic: organism

text: Eight months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in June:Lane 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Eight months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in June:Lane 3

characteristic: title


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar F36-819

text: Ten months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in August:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

text: Ten months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in August:Lane 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

characteristic: organism

text: Ten months

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in August:Lane 6


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum spontaneum

text: Six months

text: Soil

text: Culm

text: Saccharum spontaneum

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum spontaneum

text: Six months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum spontaneum


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum spontaneum

text: Six months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum spontaneum


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

characteristic: organism

text: Twelve months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in October:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

text: Twelve months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in October:Lane 5

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar R570

text: Twelve months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 2 of sugarcane culm in October:Lane 6


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum spontaneum

text: Ten months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum spontaneum

text: Replicate 3 of sugarcane culm in August:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum spontaneum

characteristic: organism

text: Ten months

text: Soil

text: Culm

text: Saccharum spontaneum

text: Replicate 3 of sugarcane culm in August:Lane 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum spontaneum

text: Ten months

text: Soil

text: Culm

text: Saccharum spontaneum

text: Replicate 3 of sugarcane culm in August:Lane 6

characteristic: title


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar F36-819

text: Eight months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in June:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

text: Eight months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in June:Lane 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

characteristic: organism

text: Eight months

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

text: Replicate 2 of sugarcane culm in June:Lane 6


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

text: Ten months

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar F36-819

text: Ten months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar F36-819


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar F36-819

text: Ten months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar F36-819


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

characteristic: organism

text: Ten months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Ten months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar SP80-3280

text: Ten months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Six months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in April:Lane 1


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

characteristic: organism

text: Six months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in April:Lane 2


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Six months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 2 of sugarcane culm in April:Lane 3

characteristic: title


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar SP80-3280

text: Eight months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 3 of sugarcane culm in June:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

text: Eight months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 3 of sugarcane culm in June:Lane 5


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar SP80-3280

characteristic: organism

text: Eight months

text: Soil

text: Culm

text: Saccharum hybrid cultivar SP80-3280

text: Replicate 3 of sugarcane culm in June:Lane 6


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

text: Eight months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar R570

text: Eight months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

text: Eight months

text: Soil

characteristic: plant growth medium

text: Culm

characteristic: plant structure

text: Saccharum hybrid cultivar R570


text: ESALQ/USP

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Brazil

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

characteristic: organism

text: Twelve months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 3 of sugarcane culm in October:Lane 4


characteristic: ENA-CHECKLIST

characteristic: External Id

text: ESALQ/USP

text: public

characteristic: common name

characteristic: genotype

text: Brazil

characteristic: geographic location (country and/or sea)

text: Plants in field conditions

text: Saccharum hybrid cultivar R570

text: Twelve months

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 3 of sugarcane culm in October:Lane 5

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: ESALQ/USP

text: public

text: Brazil

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Plants in field conditions

characteristic: isolation and growth condition

text: Saccharum hybrid cultivar R570

text: Twelve months

characteristic: plant developmental stage

text: Soil

text: Culm

text: Saccharum hybrid cultivar R570

text: Replicate 3 of sugarcane culm in October:Lane 6