E-MTAB-5362:Sample 156

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 156

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 156


E-MTAB-5362:Sample 157

status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 157

tag: Namespace:Wellcome Trust Sanger Institute

unit: week

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Protocols: Liberase digestion of LN (same concentration as for thymus); depletion of TCRb, CD3, F4/80, CD8, B220, Dx5 and CD19 +ve cells by AutoMACS Cells were sorted directly into 96 well plates containing lysis buffer, followed by reverse transcription and cDNA preparation as per Smart-seq protocol Nextera XT. Spike-in sequences and their concentrations can be found in the Additional files attached to this ArrayExpress experiment.

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 157

characteristic: title


E-MTAB-5362:Sample 158

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 158

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 158


E-MTAB-5362:Sample 159

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 159

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 159


E-MTAB-5362:Sample 160

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 160

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 160

characteristic: title


E-MTAB-5362:Sample 161

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 161

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 161


E-MTAB-5362:Sample 162

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 162

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: OK

text: Sample 162


E-MTAB-5362:Sample 163

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 163

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: not OK

characteristic: single cell well quality

characteristic: strain

text: Sample 163

characteristic: title


E-MTAB-5362:Sample 164

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 164

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 164


E-MTAB-5362:Sample 165

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 165

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 165


E-MTAB-5362:Sample 166

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 166

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 166

characteristic: title


E-MTAB-5362:Sample 167

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 167

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: not OK

text: Sample 167


E-MTAB-5362:Sample 168

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 168

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 168


E-MTAB-5362:Sample 169

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 169

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 169

characteristic: title


E-MTAB-5362:Sample 170

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 170

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 170


E-MTAB-5362:Sample 171

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 171

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: OK

text: Sample 171


E-MTAB-5362:Sample 172

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 172

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 172

characteristic: title


E-MTAB-5362:Sample 173

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 173

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 173


E-MTAB-5362:Sample 174

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 174

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: OK

text: Sample 174


E-MTAB-5362:Sample 175

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 175

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: not OK

characteristic: single cell well quality

characteristic: strain

text: Sample 175

characteristic: title


E-MTAB-5362:Sample 176

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 176

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 176


E-MTAB-5362:Sample 177

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 177

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: OK

text: Sample 177


E-MTAB-5362:Sample 178

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 178

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 178

characteristic: title


E-MTAB-5362:Sample 179

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 179

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 179


E-MTAB-5362:Sample 180

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 180

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 180


E-MTAB-5362:Sample 181

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 181

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: not OK

characteristic: single cell well quality

characteristic: strain

text: Sample 181

characteristic: title


E-MTAB-5362:Sample 182

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 182

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 182


E-MTAB-5362:Sample 183

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 183

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 183


E-MTAB-5362:Sample 184

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 184

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 184

characteristic: title


E-MTAB-5362:Sample 185

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 185

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 185


E-MTAB-5362:Sample 186

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 186

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: OK

text: Sample 186


E-MTAB-5362:Sample 187

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 187

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: not OK

characteristic: single cell well quality

characteristic: strain

text: Sample 187

characteristic: title


E-MTAB-5362:Sample 188

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 188

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: not OK

text: Sample 188


E-MTAB-5362:Sample 189

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 189

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 189


E-MTAB-5362:Sample 190

text: Wellcome Trust Sanger Institute

text: public

text: E-MTAB-5362:Sample 190

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: facs marker

characteristic: genotype

text: Mus musculus

characteristic: organism

text: Mus musculus

text: peripheral lymph node

characteristic: organism part

text: Mus musculus

text: male

characteristic: single cell id

text: OK

characteristic: single cell well quality

characteristic: strain

text: Sample 190

characteristic: title


E-MTAB-5362:Sample 191

characteristic: ENA-CHECKLIST

text: Wellcome Trust Sanger Institute

text: public

characteristic: SRA accession

text: E-MTAB-5362:Sample 191

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: extrathymic Aire-expressing cell

characteristic: cell type

text: house mouse

characteristic: description

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

characteristic: sex

text: OK

text: Sample 191


E-MTAB-5362:Sample 192

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Trust Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-5362:Sample 192

text: ArrayExpress

text: extrathymic Aire-expressing cell

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: peripheral lymph node

text: Mus musculus

text: male

text: not OK

text: Sample 192


text: public

tag: Namespace:Department of Bioscience and Food Production Science, Interdisciplinary Graduate School of Science and Technology, Shinshu University

text: ArrayExpress

text: Protocols: Four-week-grown AM/NM roots 0, 3, 6, 12, 24 h and 7 d after high Pi application Total RNA was isolated using RNAiso Plus (Takara) and Fruit-mate (Takara). Genomic DNA was removed from the RNA solution by digesting with RNase-free DNase (Qiagen) on an RNeasy column (Qiagen), and the RNA was then purified by the column. The purified RNA was checked for the integrity by capillary gel electrophoresis (Bioanalyzer, Agilent Technologies). cDNA libraries for RNA-seq were constructed using a TruSeq RNA Sample Prep Kit (Illumina).

text: no Pi application

characteristic: growth condition

text: Arbuscular mycorrhizal

characteristic: infect

text: Lotus japonicus

characteristic: organism

text: Lotus japonicus

text: root

characteristic: organism part

text: Lotus japonicus

unit: hour

characteristic: time

characteristic: title


characteristic: ENA-CHECKLIST

text: Department of Bioscience and Food Production Science, Interdisciplinary Graduate School of Science and Technology, Shinshu University

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: no Pi application

text: Arbuscular mycorrhizal

text: Lotus japonicus

text: Lotus japonicus

text: root

text: Lotus japonicus


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

characteristic: description

text: no Pi application

text: Lotus japonicus

text: Lotus japonicus

text: root

text: Lotus japonicus


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: high Pi application

text: Arbuscular mycorrhizal

text: Lotus japonicus

text: Lotus japonicus

text: root

text: Lotus japonicus


text: public

text: ArrayExpress

text: high Pi application

characteristic: growth condition

text: Lotus japonicus

characteristic: organism

text: Lotus japonicus

text: root

text: Lotus japonicus


text: public

text: ArrayExpress

text: high Pi application

text: Arbuscular mycorrhizal

characteristic: infect

text: Lotus japonicus

text: Lotus japonicus

text: root

characteristic: organism part

text: Lotus japonicus

unit: day

characteristic: time


characteristic: ENA-CHECKLIST

text: University of Cambridge

text: public

characteristic: SRA accession

tag: Namespace:University of Cambridge

text: ArrayExpress

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the “High MOI” experiment - samples 37-39) in Hank’s balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until harvest. At the appropriate time point, cells were treated with Tunicamycin then flash frozen or treated with 1 X CHX (to 100 µg/ml; 2 min), or 100 X CHX (to 10,000 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing.

text: Mus musculus

text: Mus musculus

text: Mus musculus

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Animal and Plant Health Agency

text: public

tag: Namespace:Animal and Plant Health Agency

characteristic: Submitter Id

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: healthy

characteristic: host health state

text: porcine

characteristic: host scientific name

characteristic: isolate

text: Caecal Content

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli

text: Prevalence of antimicrobial resistance genes in Escherichia coli isolated from pigs in England.


characteristic: External Id

text: Animal and Plant Health Agency

characteristic: INSDC center name

characteristic: INSDC first public

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text: Escherichia coli

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text: Escherichia coli


characteristic: ENA-CHECKLIST

text: Animal and Plant Health Agency

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characteristic: SRA accession

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text: Escherichia fergusonii

text: Escherichia fergusonii


characteristic: ENA-FIRST-PUBLIC

text: UPPSALA UNIVERSITY, IEG, LIMNOLOGY

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tag: Namespace:UPPSALA UNIVERSITY, IEG, LIMNOLOGY

text: temperate

characteristic: environment (biome)

text: lake

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text: Sweden

unit: m

characteristic: geographic location (depth)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: bacterium

text: Coalescence of soil and lake bacteria in ambient and high DOC freshwater

characteristic: project name

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tag: Namespace:Instituto de Tecnologia Quimica e Biologica - ITQB NOVA

characteristic: Submitter Id

text: inoculation with Bursaphelechus xylophilus

characteristic: biotic regimen

characteristic: collection date

text: maritime pine

characteristic: common name

text: Susceptible

characteristic: description

text: 24.5 Gb

characteristic: estimated size

text: Portugal

characteristic: geographic location (country and/or sea)

text: field

characteristic: growth facility

text: Pinus pinaster

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characteristic: plant developmental stage

text: soil

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text: Nematoda treatment

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characteristic: sample disease stage

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characteristic: sampled age

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characteristic: subspecific genetic lineage rank


characteristic: ENA-CHECKLIST

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characteristic: geographic location (latitude)

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characteristic: organism

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characteristic: title


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characteristic: common name

text: Resistant

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characteristic: estimated size

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characteristic: geographic location (country and/or sea)

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characteristic: growth facility

text: Pinus pinaster

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characteristic: plant developmental stage

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characteristic: ENA-CHECKLIST

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characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: sampled age

text: Pinus pinaster

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characteristic: subspecific genetic lineage rank


text: Mouse colon

characteristic: ArrayExpress-Phenotype

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text: Mus musculus

characteristic: ArrayExpress-Species

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text: house mouse

characteristic: common name

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text: Mus musculus

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text: YORK UNIVERSITY

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tag: Namespace:YORK UNIVERSITY

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text: H2AD ex-situ

text: metagenome

text: pyrosequencing

characteristic: title


text: YORK UNIVERSITY

text: public

text: ex-situ T2 reactor 4B

text: anaerobic bioreactor

characteristic: environment (biome)

text: anaerobic sludge

characteristic: environment (feature)

text: anaerobic digester sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: investigation type

characteristic: miscellaneous environmental package

text: metagenome

text: H2AD ex-situ

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method


text: Colon

characteristic: ArrayExpress-Phenotype

text: female

characteristic: ArrayExpress-Sex

text: Bos taurus

characteristic: ArrayExpress-Species

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: cattle

characteristic: common name

text: Bos taurus

text: Bos taurus


text: Colon

text: male

text: Balaenoptera physalus

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Fin whale

text: Balaenoptera physalus

characteristic: organism

text: Balaenoptera physalus

characteristic: title


text: THE UNIVERSITY OF NEW SOUTH WALES

text: public

tag: Namespace:THE UNIVERSITY OF NEW SOUTH WALES

characteristic: collection date

text: Candidatus Methanoperedens sp. LFW-24. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: New South Wales, Lucas Heights. Little Forest Legacy Site

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: uncultured Candidatus Methanoperedens sp.

text: Archaeal genomes reconstructed from groundwater samples of a legacy radioactive site

characteristic: project name

text: Illumina

characteristic: sequencing method

text: Candidatus Methanoperedens sp. LFW-24

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Altiarchaeota archaeon LFW-28. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

text: metagenome

text: Candidatus Altiarchaeota archaeon

characteristic: organism

text: Candidatus Altiarchaeota archaeon

text: Illumina

text: Altiarchaeota archaeon LFW-28

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

text: public

characteristic: collection date

text: Candidatus Anstonellaceae archaeon LFW-29. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Anstonellaceae archaeon

text: Candidatus Anstonellaceae archaeon

text: Illumina

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Anstonella stagnisolia LFW-35. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Candidatus Anstonella stagnisolia

characteristic: project name

text: Candidatus Anstonella stagnisolia

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: LFWA-IV lineage archaeon LFW-46. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Nanohaloarchaeota archaeon

characteristic: organism

text: Candidatus Nanohaloarchaeota archaeon

text: Illumina

text: LFWA-IV lineage archaeon LFW-46

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Thermoplasmata archaeon LFW-68_2. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Thermoplasmata archaeon

text: Thermoplasmata archaeon

text: Illumina

text: Thermoplasmata archaeon LFW-68_2

characteristic: title

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Methanosaetaceae archaeon LFW-83_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Methanotrichaceae archaeon

characteristic: project name

text: Methanotrichaceae archaeon

text: Illumina

characteristic: sequencing method

text: Methanosaetaceae archaeon LFW-83_1

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Gugararchaeum adminiculabundum LFW-121_3. For raw reads check project PRJEB21807

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: organism

text: Illumina

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Micrarchaeales archaeon LFW-125_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Micrarchaeales archaeon

text: Candidatus Micrarchaeales archaeon

text: Illumina

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Norongarragalina meridionalis LFW-144_1. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

characteristic: project name

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Fermentimicrarchaeaceae archaeon LFW-144_2_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: organism

text: Illumina

text: Candidatus Fermentimicrarchaeaceae archaeon genus_5 LFW-144_2_1

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Methanosaetaceae archaeon LFW-151_1. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Methanotrichaceae archaeon

text: Methanotrichaceae archaeon

text: Illumina

text: Methanosaetaceae archaeon LFW-151_1

characteristic: title

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Methanosaetaceae archaeon LFW-151_2. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Methanotrichaceae archaeon

characteristic: project name

text: Methanotrichaceae archaeon

text: Illumina

characteristic: sequencing method

text: Methanosaetaceae archaeon LFW-151_2

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Norongarragalinales archaeon LFW-156_1. For raw reads check project PRJEB21807

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Norongarragalinales archaeon

characteristic: organism

text: Candidatus Norongarragalinales archaeon

text: Illumina

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Pacearchaeota archaeon LFW-165_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: New South Wales, Lucas Heights. Little Forest Legacy Site

text: metagenome

text: Candidatus Pacearchaeota archaeon

text: Candidatus Pacearchaeota archaeon

text: Illumina

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Pacearchaeota archaeon LFW-170_1. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Candidatus Pacearchaeota archaeon

text: Archaeal genomes reconstructed from groundwater samples of a legacy radioactive site

characteristic: project name

text: Candidatus Pacearchaeota archaeon

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Pacearchaeota archaeon LFW-170_3. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Pacearchaeota archaeon

characteristic: organism

text: Candidatus Pacearchaeota archaeon

text: Illumina

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Micrarchaeia Lineage LFWA-IIIrel archaeon LFW-242_1. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Micrarchaeota archaeon

text: Candidatus Micrarchaeota archaeon

text: Illumina

characteristic: title

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus 'Tiddalikarchaeum anstoanum' LFW-252_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Candidatus Tiddalikarchaeum anstoanum

characteristic: project name

text: Candidatus Tiddalikarchaeum anstoanum

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Diapherotrites archaeon LFW-252_2. For raw reads check project PRJEB21807

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Diapherotrites archaeon

characteristic: organism

text: Candidatus Diapherotrites archaeon

text: Illumina

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Woesearchaeota archaeon LFW-252_3. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Woesearchaeota archaeon

text: Candidatus Woesearchaeota archaeon

text: Illumina

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Pacearchaeota archaeon LFW-262_2. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Candidatus Pacearchaeota archaeon

characteristic: project name

text: Candidatus Pacearchaeota archaeon

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Pacearchaeota archaeon LFW-262_5. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Pacearchaeota archaeon

characteristic: organism

text: Candidatus Pacearchaeota archaeon

text: Illumina

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Pacearchaeota archaeon LFW-273_1. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Pacearchaeota archaeon

text: Candidatus Pacearchaeota archaeon

text: Illumina

characteristic: title

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Methanoperedens sp. LFW-280_1_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: uncultured Candidatus Methanoperedens sp.

characteristic: project name

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Methanoperedens sp. LFW-280_2_2. For raw reads check project PRJEB21807

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: organism

text: Illumina

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Methanoperedens sp. LFW-280_3_1. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Illumina

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Methanoperedens sp. LFW-280_3_2. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

characteristic: project name

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Methanoperedens sp. LFW-280_4. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

characteristic: organism

text: Illumina

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Bilamarchaeaceae archaeon LFW-281_1_2. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: New South Wales, Lucas Heights. Little Forest Legacy Site

text: metagenome

text: Candidatus Bilamarchaeaceae archaeon

text: Candidatus Bilamarchaeaceae archaeon

text: Illumina

characteristic: title

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Anstonellaceae archaeon LFW-281_3_2. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Candidatus Anstonellaceae archaeon

text: Archaeal genomes reconstructed from groundwater samples of a legacy radioactive site

characteristic: project name

text: Candidatus Anstonellaceae archaeon

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Diapherotrites archaeon LFW-281_4. For raw reads check project PRJEB21807

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Diapherotrites archaeon

characteristic: organism

text: Candidatus Diapherotrites archaeon

text: Illumina

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Anstonellaceae archaeon LFW-281_5_4. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Anstonellaceae archaeon

text: Candidatus Anstonellaceae archaeon

text: Illumina

characteristic: title

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Anstonellaceae archaeon LFW-281_6_1. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: Candidatus Anstonellaceae archaeon

characteristic: project name

text: Candidatus Anstonellaceae archaeon

text: Illumina

characteristic: sequencing method

text: water

characteristic: water environmental package


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Candidatus Burarchaeum australiense LFW-281_7. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

characteristic: environment (biome)

text: groundwater

characteristic: environment (feature)

text: water

characteristic: environment (material)

text: Australia

characteristic: geographic location (country and/or sea)

text: metagenome

text: Candidatus Burarchaeum australiense

characteristic: organism

text: Candidatus Burarchaeum australiense

text: Illumina

text: water


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Candidatus Bilamarchaeum dharawalense LFW-283_2. For raw reads check project PRJEB21807

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

text: Candidatus Bilamarchaeum dharawalense

text: Candidatus Bilamarchaeum dharawalense

text: Illumina

characteristic: title

text: water


text: THE UNIVERSITY OF NEW SOUTH WALES

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Thaumarchaeota archaeon LFW-283_4_5. For raw reads check project PRJEB21807

characteristic: description

text: groundwater

text: groundwater

text: water

text: Australia

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: uncultured Nitrosopumilaceae archaeon

characteristic: project name

text: uncultured Nitrosopumilaceae archaeon

text: Illumina

characteristic: sequencing method

text: Thaumarchaeota archaeon LFW-283_4_5

text: water

characteristic: water environmental package


text: Ear

characteristic: ArrayExpress-Phenotype

text: Bos taurus

characteristic: ArrayExpress-Species

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: cattle

characteristic: common name

text: Bos taurus

characteristic: organism

text: Bos taurus


text: Skin

text: Heterocephalus glaber

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: naked mole-rat

text: Heterocephalus glaber

text: Heterocephalus glaber

characteristic: title


text: Naked mole rat colon

text: male

characteristic: ArrayExpress-Sex

text: Heterocephalus glaber

text: SC

text: public

text: naked mole-rat

text: Heterocephalus glaber

text: Heterocephalus glaber


text: Naked mole rat lymphocyte

text: male

text: Heterocephalus glaber

text: SC

text: public

text: naked mole-rat

text: Heterocephalus glaber

text: Heterocephalus glaber


sfC

text: UMR 1333 DGIMI

text: public

text: sfC

tag: Namespace:UMR 1333 DGIMI

characteristic: collection date

text: fall armyworm

text: Corn strain raised in the insectarium at University of Montpellier

characteristic: description

text: insectarium

characteristic: environment (biome)

text: insectarium

characteristic: environment (feature)

text: artificial diet

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: miscellaneous natural or artificial environment

characteristic: miscellaneous environmental package

text: Spodoptera frugiperda

characteristic: project name

text: Spodoptera frugiperda

text: pacbio RSII

characteristic: sequencing method

text: Spodoptera frugiperda corn strain


sfR

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UMR 1333 DGIMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: sfR

text: fall armyworm

characteristic: common name

text: Rice strain raised in the insectarium at University of Montpellier

text: insectarium

text: insectarium

text: artificial diet

text: France

text: metagenome

text: Spodoptera frugiperda

characteristic: organism

text: Spodoptera frugiperda

text: pacbio RSII

text: Spodoptera frugiperda rice strain


text: Rat colon

characteristic: ArrayExpress-Phenotype

text: Rattus norvegicus

characteristic: ArrayExpress-Species

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Norway rat

text: Rattus norvegicus

text: Rattus norvegicus

characteristic: title


text: Giraffe colon

text: Giraffa reticulata

text: SC

text: public

text: Giraffa reticulata

text: Giraffa reticulata

text: Giraffa reticulata


text: Bison colon

text: Bison bonasus

text: SC

text: public

text: European bison

text: Bison bonasus

text: Bison bonasus


text: Black-White Colobus colon

text: Colobus guereza kikuyuensis

text: SC

text: public

text: Colobus guereza kikuyuensis

text: Colobus guereza kikuyuensis

text: Colobus guereza kikuyuensis


text: Mouse colon

text: Mus musculus

text: SC

text: public

text: house mouse

text: Mus musculus

text: Mus musculus


text: Streptococcus pneumoniae

characteristic: ArrayExpress-SPECIES

text: SC

text: public

text: Tyzzer's bacillus

text: Streptococcus pneumoniae

text: Streptococcus pneumoniae

characteristic: subject id


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: AD-culturomics

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


INO

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: INO

characteristic: Submitter Id

text: inoculum

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: AD-culturomics

text: metagenome

text: pyrosequencing

text: INO

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

text: ALDWARKE_replicate 1

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

characteristic: title

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

text: LUNDWOOD_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: YWI_microbiome study

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: WOMBWELL_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

text: SANDALL_replicate 1

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

characteristic: title

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

text: OLD WHITTINGTON_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: YWI_microbiome study

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: STAVELEY_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

text: WOODHOUSE MILL_replicate 1

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

characteristic: title

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

text: BLACKBURN MEADOWS_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: YWI_microbiome study

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: BRIDLINGTON_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

text: HULL_replicate 1

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

characteristic: title

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

text: GOOLE_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: YWI_microbiome study

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ESHOLT_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

text: CALDERVALE_replicate 1

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

characteristic: title

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

text: SUTTON_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: YWI_microbiome study

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NABURN_replicate 1

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

text: wastewater/sludge


characteristic: ENA-CHECKLIST

text: YORK UNIVERSITY

text: public

characteristic: collection date

text: ALDWARKE_replicate 2

characteristic: description

text: wastewater/sludge

characteristic: environment (biome)

text: wastewater/sludge

characteristic: environment (feature)

text: wastewater/sludge

characteristic: environment (material)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

characteristic: title

text: wastewater/sludge


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: YORK UNIVERSITY

text: public

text: LUNDWOOD_replicate 2

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: YWI_microbiome study

characteristic: project name

text: metagenome

text: pyrosequencing

characteristic: sequencing method

text: wastewater/sludge

characteristic: wastewater/sludge environmental package


characteristic: External Id

text: YORK UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: WOMBWELL_replicate 2

text: wastewater/sludge

text: wastewater/sludge

text: wastewater/sludge

text: United Kingdom

text: metagenome

text: metagenome

characteristic: organism

text: YWI_microbiome study

text: metagenome

text: pyrosequencing

text: wastewater/sludge