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text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/D-NVRL-M21IRL00312205/2021

characteristic: virus identifier


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Clare

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/CE-NVRL-M21IRL00300460/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Westmeath

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/WH-NVRL-M21IRL00299771/2021

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Kilkenny

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/KK-NVRL-M21IRL00314945/2021

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/G-NVRL-M21IRL00274459/2021


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Dublin

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/D-NVRL-M21IRL00313589/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/CO-NVRL-M21IRL00312869/2021

characteristic: virus identifier


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Roscommon

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/RN-NVRL-M21IRL00311174/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Tipperary

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/TA-NVRL-M21IRL00312347/2021

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-M21IRL00299120/2021

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-M21IRL00312914/2021


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/G-NVRL-M21IRL00310338/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

text: hCov-19 Oxford Nanopore MinION reads obtained following the Artic v3 protocol

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kerry

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KY-NVRL-M21IRL00311280/2021

characteristic: virus identifier


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-M21IRL00313108/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Dublin

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: active surveillance in response to outbreak

text: hCoV-19/Ireland/D-NVRL-M21IRL00313559/2021

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Mayo

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/MO-NVRL-M21IRL00276202/2021

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Cork

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/CO-NVRL-M21IRL00312916/2021


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/G-NVRL-M21IRL00310501/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/G-NVRL-M21IRL00310540/2021

characteristic: virus identifier


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Longford

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

characteristic: sample capture status

text: hCoV-19/Ireland/LD-NVRL-M21IRL00300505/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Roscommon

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/RN-NVRL-M21IRL00311168/2021

characteristic: title


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Cork

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/CO-NVRL-M21IRL00299111/2021

characteristic: virus identifier


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Galway

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: female

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

characteristic: sample capture status

text: hCoV-19/Ireland/G-NVRL-M21IRL00310546/2021


text: NVRL

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Irish Consortium for Sequencing Covid

characteristic: broker name

text: National Virus Reference Laboratory

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Ireland

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Europe / Ireland / Galway

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: female

characteristic: host sex

text: not provided

characteristic: host subject id

text: Oro-Nasopharyngeal swab

characteristic: isolation source host associated

text: hCoV-19/Ireland/G-NVRL-M21IRL00309944/2021

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NVRL

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Irish Consortium for Sequencing Covid

text: National Virus Reference Laboratory

characteristic: collection date

text: not provided

text: Human coronavirus 2019

characteristic: description

text: Ireland

characteristic: geographic location (country and/or sea)

text: Europe / Ireland / Kildare

characteristic: geographic location (region and locality)

text: human

text: not provided

text: Homo sapiens

characteristic: host scientific name

text: male

text: not provided

text: Oro-Nasopharyngeal swab

characteristic: organism

text: hCoV-19/Ireland/KE-NVRL-M21IRL00309553/2021

characteristic: virus identifier


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Scotland

text: Human

characteristic: title


text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: organism


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


characteristic: External Id

text: SC

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Wales

text: Human

text: active surveillance in response to outbreak

characteristic: title


text: EI

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Rufigi tilapia

characteristic: common name

text: Oreochromis urolepis

text: Oreochromis urolepis

text: Kilosa urolepis

characteristic: source name


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

characteristic: organism

text: Oreochromis niloticus

text: Victoria niloticus


text: EI

characteristic: INSDC first public

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Kilosa tilapia


text: EI

characteristic: INSDC last update

text: public

text: COPO

text: Oreochromis leucostictus

text: Oreochromis leucostictus

text: Kilosa leucostictus


text: EI

text: public

text: COPO

characteristic: broker name

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Kilosa niloticus


text: EI

text: public

text: COPO

text: Oreochromis leucostictus

text: Oreochromis leucostictus

text: Victoria leucostictus


text: EI

text: public

text: COPO

text: Rufigi tilapia

text: Oreochromis urolepis

text: Oreochromis urolepis

text: Wami urolepis


text: EI

text: public

text: COPO

text: Oreochromis chungruruensis

text: Oreochromis chungruruensis

text: Aquarium chungruruensis


text: EI

text: public

text: COPO

text: Oreochromis shiranus

text: Oreochromis shiranus

text: Aquarium shiranus chilwae


text: EI

text: public

text: COPO

text: Oreochromis karongae

text: Oreochromis karongae

text: Aquarium karongae


text: EI

text: public

text: COPO

text: Rufigi tilapia

text: Oreochromis urolepis

text: Oreochromis urolepis

text: Mansi urolepis


text: EI

text: public

text: COPO

text: Rufigi tilapia

text: Oreochromis urolepis

text: Oreochromis urolepis

text: Lugongwe urolepis


text: EI

text: public

text: COPO

text: Rufigi tilapia

text: Oreochromis urolepis

text: Oreochromis urolepis

text: Mindu urolepis


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Manyara niloticus


text: EI

text: public

text: COPO

text: Oreochromis leucostictus

text: Oreochromis leucostictus

text: Mindu leucostictus


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Mindu niloticus


text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EI

characteristic: INSDC center name

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Mindu tilapia


text: EI

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Oreochromis rukwaensis

text: Oreochromis rukwaensis

text: Mtera rukwaensis

characteristic: title


text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: England

text: Human

characteristic: organism

characteristic: sample capture status


text: EI

text: public

text: COPO

characteristic: broker name

text: Rufigi tilapia

characteristic: common name

text: Oreochromis urolepis

text: Oreochromis urolepis

text: Mbuyuni urolepis

characteristic: source name


text: EI

text: public

text: COPO

text: Oreochromis leucostictus

text: Oreochromis leucostictus

text: Albert leucostictus


text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EI

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Albert niloticus


text: EI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Rufigi tilapia

text: Oreochromis urolepis

characteristic: organism

text: Oreochromis urolepis

text: Kidatu urolepis

characteristic: title


text: EI

text: public

text: COPO

characteristic: broker name

text: Nile tilapia

characteristic: common name

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Kidatu tilapia

characteristic: source name


text: EI

text: public

text: COPO

text: Oreochromis leucostictus

text: Oreochromis leucostictus

text: Songea leucostictus


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Songea niloticus


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Songea tilapia


text: EI

text: public

text: COPO

text: Oreochromis shiranus

text: Oreochromis shiranus

text: Lituhu shiranus


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Nala tilapia


text: EI

text: public

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Kilosa tilapia


text: EI

text: public

text: COPO

text: Singida tilapia

text: Oreochromis esculentus

text: Oreochromis esculentus

text: Rukwa esculentus


text: EI

text: public

text: 61819bf9b2a1e2071101b773:sample:22A-2012

text: COPO

text: Singida tilapia

text: Oreochromis esculentus

text: Oreochromis esculentus

text: Rukwa esculentus


text: EI

text: public

text: COPO

text: Oreochromis rukwaensis

text: Oreochromis rukwaensis

text: Rukwa rukwaensis


text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EI

characteristic: INSDC center name

text: public

text: COPO

text: Jipe tilapia

text: Oreochromis jipe

text: Oreochromis jipe

text: Kalimau jipe


text: EI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COPO

text: Nile tilapia

text: Oreochromis niloticus

text: Oreochromis niloticus

text: Jipe niloticus


text: EI

text: public

text: COPO

characteristic: broker name

text: Oreochromis amphimelas

characteristic: organism

text: Oreochromis amphimelas

text: Manyara amphimelas2

characteristic: source name

characteristic: title


text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human

characteristic: host scientific name


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: sample capture status


characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Wales

text: Human


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Wales

text: Human

characteristic: organism


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collecting institution

characteristic: collection date

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human

characteristic: host scientific name


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Scotland

characteristic: geographic location (region and locality)

text: Human

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

text: England

text: Human


text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Northern Ireland

text: Human

characteristic: organism


text: GUANGXI UNIVERSITY

text: public

tag: Namespace:GUANGXI UNIVERSITY

text: metaSPAdes

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

characteristic: collection date

characteristic: completeness score

text: checkm

characteristic: completeness software

characteristic: contamination score

text: d__Archaea;p__Halobacterota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanocorpusculaceae;g__Methanocorpusculum;

characteristic: description

text: organism substance

characteristic: environment (biome)

text: excreta

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: China

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: Buffalo digestive tract

characteristic: isolation source

text: bacterium

characteristic: metagenomic source

text: uncultured bacterium

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: pyrosequencing

characteristic: sequencing method

text: Buffalo digestive tract metagenome

characteristic: title


name: E-MTAB-11118:1A Mouse small intestinal organoid, 24 hours Media alone, Replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Wellcome Centre for Integrative Parasitology University of Glasgow

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Organoids were cultured from crypts isolated from the proximal 10 cm of small intestine (duodenum). Briefly, the duodenum was cut into 2 mm pieces and washed 3 times with cold PBS before incubation with 2 mM EDTA in PBS for 30 minutes at 4°C. After removal of EDTA solution, cold PBS was added and crypts isolated from basal membrane by pipetting. This procedure was repeated with more vigorous pipetting to create 6 fractions. Fractions with enriched crypts were identified using microscopy and pooled through a 70 μm cell strainer (Greiner) then spun at 300 xg for 3 min at 4oC to pellet crypts. Crypts were resuspended and spun at 100 xg for 3 mins at 4°C to remove single cells. The pellet was then resuspended in 10 ml basic medium (Advanced DMEM/F12, supplemented with 1% PenStrep, 1% L-glutamine and 10 mM HEPES, all from Gibco) and crypt numbers counted by microscopy. 500 crypts in 40 μl Matrigel (Corning) were seeded into wells of a 24-well flat-bottomed plate (Corning). After incubation for 10 min at 37oC, 400 μl of complete crypt medium was added (basic medium plus 1X N2 supplement (Life Technologies), 1X B27 supplement (Life Technologies), 50 ng/mL murine EGF (Invitrogen), 100 ng/mL murine Noggin (Peprotech) and 500 ng/ml murine R-spondin-1 (R&D). 3 μM CHIR99021 (Miltenyi) was added only for initial plating). Crypts were then cultured at 37°C in 5% CO2, medium was changed every 2-3 d and organoids passaged once a week by dissociation and washing in cold basic medium, re-seeding at 500 crypts per well in 40 μl Matrigel. Organoids were passaged at least 3 times before use. Stimulations were as follows: HpES at 10 µg/ml, IL-4 (Miltenyi) at 400 ng/ml, IL-13 (Peprotech) at 400 ng/ml and IFNγ at 1 ng/ml, 500 L3 H. polygyrus. Organoids were stimulated for 24 hours before collection for RNAseq. Stimulations were as follows: HpES at 10 µg/ml, IL-4 (Miltenyi) at 400 ng/ml, IL-13 (Peprotech) at 400 ng/ml and IFNγ at 1 ng/ml, 500 L3 H. polygyrus. Organoids were stimulated for 24 hours before collection for RNAseq. Tissues were taken and stored in either 400 µl TRIzol (Invitrogen) (for organoids) or 1 ml RNAlater (Qiagen) (for intestine samples) until RNA extraction using the RNeasy mini kit (Qiagen) could be carried out. For intestinal samples, tissue was disrupted using a TissueLyser (Qiagen) in 600 µl RLT buffer for 2 minutes at 25 Hz before continuing according to kit instructions. For organoid samples, after spinning at 12,000 xg for 2 minutes to remove debris, 100 µl chloroform was added to the supernatant before mixing well. After incubation at room temperature for 3 mins, samples were centrifuged at 12,000 xg for 15 minutes at 4oC. The upper aqueous phase was transferred to a new tube and 1.5 volumes of 100% ethanol added before transfer to a RNeasy spin column and purification as per kit instructions. An on-column DNA digestion step was included in RNA purification using a RNase free DNase (Qiagen). RNA concentration was determined using a Nanodrop 2000 (Thermo Scientific). Library preparation and whole transcriptome profiling was carried out by Glasgow Polyomics. PolyA selection library preparation was carried out using the TruSeq stranded mRNA kit (Illumina)

text: organoid culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: duodenum

characteristic: organism part

text: replicate 1

characteristic: replicate

text: Mus musculus

text: BTBR mouse

characteristic: strain


name: E-MTAB-11118:1B Mouse small intestinal organoid, 24 hours + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products), Replicate 1

characteristic: ENA-CHECKLIST

text: Wellcome Centre for Integrative Parasitology University of Glasgow

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 1

text: Mus musculus

text: BTBR mouse

characteristic: title


name: E-MTAB-11118:1C Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, Replicate 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 1

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:1D Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 1

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 1

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:1E Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, Replicate 1

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 1

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:1F Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 1

text: public

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: organoid culture

characteristic: growth condition

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 1

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:2A Mouse small intestinal organoid, 24 hours Media alone, Replicate 2

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

characteristic: organism

text: Mus musculus

text: duodenum

characteristic: organism part

text: replicate 2

characteristic: replicate

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:2B Mouse small intestinal organoid, 24 hours + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products), Replicate 2

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 2

text: Mus musculus

text: BTBR mouse

characteristic: strain


name: E-MTAB-11118:2C Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, Replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 2

text: Mus musculus

text: BTBR mouse

characteristic: title


name: E-MTAB-11118:2D Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 2

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 1

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:2E Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, Replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 2

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:2F Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 2

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 2

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:3A Mouse small intestinal organoid, 24 hours Media alone, Replicate 3

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: duodenum

characteristic: organism part

text: replicate 3

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:3B Mouse small intestinal organoid, 24 hours + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products), Replicate 3

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 3

characteristic: replicate

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:3C Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, Replicate 3

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 3

text: Mus musculus

text: BTBR mouse

characteristic: strain


name: E-MTAB-11118:3D Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 3

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 3

text: Mus musculus

text: BTBR mouse

characteristic: title


name: E-MTAB-11118:3E Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, Replicate 3

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 3

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:3F Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 3

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 3

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:4A Mouse small intestinal organoid, 24 hours Media alone, Replicate 4

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: organoid culture

characteristic: growth condition

text: Mus musculus

characteristic: organism

text: Mus musculus

text: duodenum

text: replicate 4

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:4B Mouse small intestinal organoid, 24 hours + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products), Replicate 4

characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: house mouse

characteristic: description

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

characteristic: organism part

text: replicate 4

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:4C Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, Replicate 4

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 4

characteristic: replicate

text: Mus musculus

text: BTBR mouse


name: E-MTAB-11118:4D Mouse small intestinal organoid, 24 hours + 1 ng/ml Interferon-gamma, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 4

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 4

text: Mus musculus

text: BTBR mouse

characteristic: strain


name: E-MTAB-11118:4E Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, Replicate 4

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 4

text: Mus musculus

text: BTBR mouse

characteristic: title


name: E-MTAB-11118:4F Mouse small intestinal organoid, 24 hours + 400 ng/ml IL-4+IL13, + 10 ug/ml Heligmosomoides polygyrus excretory/secretory products (Hpexcretory/secretory products) Replicate 4

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: house mouse

text: organoid culture

text: Mus musculus

text: Mus musculus

text: duodenum

text: replicate 4

text: Mus musculus

text: BTBR mouse


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

tag: Namespace:ETH ZURICH D-BSSE

text: SIB

characteristic: broker name

text: Viollier AG; Hagmattstrasse 14, 4123 Allschwil

characteristic: collecting institution

characteristic: collection date

text: Andrea Patrizia Salzmann, Henriette Kurth, Christiane Beckmann, Ivan Topolsky, Chaoran Chen, Sarah Nadeau, Louis du Plessis, Kim Philipp Jablonski, Lara Fuhrmann, Niko Beerenwinkel, Christoph Noppen, Olivier Kobel, Maurice Redondo, Tanja Stadler

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/AG-ETHZ-34420309/2021

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH D-BSSE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: AG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-ETHZ-34419471/2021

characteristic: organism

characteristic: title


characteristic: GISAID Accession ID

text: ETH ZURICH D-BSSE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: AG

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/AG-ETHZ-34387234/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: ETH ZURICH D-BSSE

text: public

text: SIB

text: Switzerland

text: AG

text: Human

text: restricted access

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