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text: hCoV-19/Switzerland/TI-EOC-26313964/2021

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

text: SIB

text: Martinetti Lucchini Gladys, Valeria Spina

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26314135/2021

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26316819/2021

characteristic: isolate

characteristic: sample capture status

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characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Labormedizinisches Zentrum Dr. Risch, Pregassona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26323481/2021


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: SIB

text: Unilabs Ticino, Breganzona, Switzerland

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26321852/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

text: SIB

text: Switzerland

text: TI

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characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26323495/2021

characteristic: isolate

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characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

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text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26318476/2021


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26318525/2021

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-022_26319942/2021

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-012_26311403/2021


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

text: SIB

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26322895/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26322204/2021

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26322308/2021

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SIB

text: Unilabs Ticino, Breganzona, Switzerland

text: Martinetti Lucchini Gladys, Valeria Spina

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26325049/2021

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC last update

text: public

text: SIB

text: Unilabs Ticino, Breganzona, Switzerland

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26325050/2021

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Unilabs Ticino, Breganzona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26325051/2021


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CHU

characteristic: INSDC last update

text: public

text: human

characteristic: common name

text: Lung

characteristic: environment (biome)

text: Town

characteristic: environment (feature)

text: Lung

characteristic: environment (material)

text: France

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-lung

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: human lung metagenome

characteristic: organism

text: Grippe

characteristic: project name

text: human lung metagenome

text: MiSeq

characteristic: sequencing method

text: Grippe


characteristic: ENA-CHECKLIST

text: Wellcome Sanger Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Wellcome Sanger Institute

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Single nuclei dissociated from frozen tissue.

characteristic: cell type

text: house mouse

text: Protocols: Brains of wild-type adult C57BL/6 mice (postnatal day 56, 1 female and 1 male) were dissected, snap frozen, embedded in optimal cutting temperature compound (Tissue-Tek) and stored at -80oC. Brain hemispheres were cryosectioned at -20oC using a cryostat (Leica, CM3050S). Thick (200 µm) mouse brain sections were cryosectioned, dissected from OCT and kept in a tube on dry ice until subsequent processing. Nuclei were extracted from each section as described previously57. Briefly, nuclei were released from sections via Dounce homogenisation, Hoechst-stained, and isolated via fluorescence-activated cell sorting (FACS). Nuclei were then loaded into the 10X Chromium Single Cell 3′ Kit (v3) to obtain 3,000-7,000 nuclei per well, and library preparation was done per manufacturer’s protocol.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: Individual 1

characteristic: individual

text: Mus musculus

text: Mus musculus

text: brain

characteristic: organism part

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Wellcome Sanger Institute

characteristic: INSDC last update

text: public

text: ArrayExpress

text: house mouse

characteristic: common name

text: adult

text: wild type genotype

text: Individual 2

text: Mus musculus

characteristic: organism

text: Mus musculus

text: brain

text: Mus musculus

text: male


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) - Portugal

characteristic: CENTER NAME

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

characteristic: isolate

characteristic: sample capture status


characteristic: CENTER NAME

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE

characteristic: INSDC center name

characteristic: INSDC last update

text: public

text: not provided

text: not provided

characteristic: common name

text: Portugal

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

characteristic: organism

characteristic: title


text: Instituto Nacional de Saude Doutor Ricardo Jorge I.P. (INSA) and Institute of Biomedicine (iBiMed) - Universidade de Aveiro - Portugal

characteristic: INSDC first public

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: TITLE

text: not provided

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Portugal

characteristic: geographic location (country and/or sea)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

text: public

characteristic: age

characteristic: anonymized name

characteristic: bmi

characteristic: body mass

text: Poland

characteristic: country

characteristic: crp

characteristic: dbp

text: Original Time 1

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated-habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Poland

characteristic: geo loc name

characteristic: glucose

characteristic: hdl

characteristic: height

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

characteristic: host body mass index

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: human

text: Homo sapiens

characteristic: host scientific name

characteristic: host subject id

characteristic: host taxid

characteristic: host weight

text: years

text: kg

characteristic: hr

characteristic: ins

text: Original

characteristic: intervention

characteristic: latitude

characteristic: ldl

characteristic: longitude

characteristic: lps

text: human gut metagenome

text: Sanprobi

text: YES

text: feces

text: human gut metagenome

text: Multispecies probiotic supplementation and cardiometabolic profile


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

characteristic: anonymized name

characteristic: bmi

characteristic: body mass

text: Poland

characteristic: country

characteristic: crp

characteristic: dbp

text: Original Time 2

characteristic: description

text: TRUE

characteristic: elevation

text: Host-asssociated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: human-associated-habitat

characteristic: env feature

text: human-gut

characteristic: env package

text: feces

text: Poland

characteristic: geo loc name

characteristic: glucose

characteristic: hdl

characteristic: height

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: human

characteristic: host common name

text: Homo sapiens

text: years

text: kg

text: Original

text: human gut metagenome

characteristic: organism

text: Sanprobi

text: YES

text: feces

text: human gut metagenome