characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRONINGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: AGTGCTACGA

characteristic: adapters

characteristic: collection date

characteristic: common name

text: Female WT WTControl 6 weeks diet

text: host-associated habitat

characteristic: environment (biome)

text: gut-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body product

text: Mouse

characteristic: host common name

text: WTControl

characteristic: host diet

characteristic: host diet basis

text: BTBR Pahenu2

characteristic: host disease status

text: WT

characteristic: host genotype

text: Young Adult

characteristic: host life stage

text: female

characteristic: host sex

characteristic: host subject id

text: host-associated

text: metagenome

text: QIAGEN PowerSoil

text: mouse gut metagenome

text: 0515F, 926R

text: mouse gut metagenome

text: Illumina

text: Good


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRONINGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF GRONINGEN

characteristic: Submitter Id

text: CGATCGTATA

characteristic: adapters

characteristic: collection date

text: Female WT WTControl 10 weeks diet

characteristic: description

text: host-associated habitat

text: gut-associated habitat

text: feces

text: Netherlands

unit: DD

text: feces

text: Mouse

text: WTControl

text: BTBR Pahenu2

text: WT

text: Adult

text: female

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: QIAGEN PowerSoil

characteristic: nucleic acid extraction

text: mouse gut metagenome

characteristic: organism

text: 0515F, 926R

characteristic: pcr primers

characteristic: plasma phe

characteristic: project name

unit: °C

characteristic: sample storage temperature

unit: ng

characteristic: sample volume or weight for DNA extraction

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

characteristic: sequencing run

text: Good

characteristic: status sequencing

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRONINGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CGCAGTACGA

characteristic: adapters

characteristic: collection date

characteristic: common name

text: Female PKU SemiPheRestricted+LNAA Start Diet

characteristic: description

text: host-associated habitat

characteristic: environment (biome)

text: gut-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body product

text: Mouse

characteristic: host common name

text: SemiPheRestricted+LNAA

characteristic: host diet

characteristic: host diet basis

text: BTBR Pahenu2

characteristic: host disease status

text: PKU

characteristic: host genotype

text: Weaning

characteristic: host life stage

text: female

characteristic: host sex

characteristic: host subject id

text: host-associated

text: metagenome

text: QIAGEN PowerSoil

text: mouse gut metagenome

text: 0515F, 926R

text: mouse gut metagenome

text: Illumina

text: Wrong Diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRONINGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CGCGTATACA

characteristic: adapters

characteristic: collection date

characteristic: common name

text: Female PKU SemiPheRestricted+LNAA 6 weeks diet

text: host-associated habitat

text: gut-associated habitat

text: feces

text: Netherlands

text: feces

text: Mouse

text: SemiPheRestricted+LNAA

text: BTBR Pahenu2

text: PKU

text: Young Adult

text: female

characteristic: host taxid

text: host-associated

characteristic: host-associated environmental package

text: metagenome

characteristic: investigation type

text: QIAGEN PowerSoil

characteristic: nucleic acid extraction

text: mouse gut metagenome

characteristic: organism

text: 0515F, 926R

characteristic: pcr primers

characteristic: project name

characteristic: sample storage temperature

characteristic: sample volume or weight for DNA extraction

text: mouse gut metagenome

text: Illumina

characteristic: sequencing method

characteristic: sequencing run

text: Wrong Diet

characteristic: status sequencing

characteristic: target gene

characteristic: target subfragment

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF GRONINGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: CGTACAGTCA

characteristic: adapters

characteristic: collection date

text: Female PKU SemiPheRestricted+LNAA 10 weeks diet

characteristic: description

text: host-associated habitat

characteristic: environment (biome)

text: gut-associated habitat

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: feces

characteristic: host body product

text: Mouse

characteristic: host common name

text: SemiPheRestricted+LNAA

characteristic: host diet

characteristic: host diet basis

text: BTBR Pahenu2

characteristic: host disease status

text: PKU

characteristic: host genotype

text: Adult

characteristic: host life stage

text: female

characteristic: host sex

characteristic: host subject id

text: host-associated

text: metagenome

text: QIAGEN PowerSoil

text: mouse gut metagenome

text: 0515F, 926R

characteristic: plasma phe

text: mouse gut metagenome

text: Illumina

text: Wrong Diet


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CIBIO-INBIO RESEARCH CENTER IN BIODIVERSITY AND GENETIC RESOURCES

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Airen

characteristic: cultivar

text: Airen (Sequencing data no. 1 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: UTAD collection, Portugal

characteristic: isolation source

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

characteristic: tissue type

text: Airen

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CIBIO-INBIO RESEARCH CENTER IN BIODIVERSITY AND GENETIC RESOURCES

text: public

text: wine grape

text: Airen

text: Airen (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

characteristic: geographic location (country and/or sea)

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Airen


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: wine grape

text: Alfrocheiro

text: Alfrocheiro

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Alfrocheiro


text: public

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Aligote

characteristic: cultivar

text: Aligote

characteristic: description

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Aligote


text: public

text: wine grape

text: Alvarelhao

text: Alvarelhao

text: Mature

characteristic: dev stage

text: Portugal

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

characteristic: tissue type

text: Alvarelhao


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Alvarinho

text: Alvarinho_1 (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Alvarinho

text: Alvarinho_1 (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Alvarinho

characteristic: cultivar

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


text: public

text: wine grape

text: Amaral

text: Amaral

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Amaral


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Aragonez

text: Aragonez

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Aragonez


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Arinto

text: Arinto (Sequencing data no. 1 of 3)

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Arinto

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Arinto

text: Arinto (Sequencing data no. 2 of 3)

text: Mature

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Arinto


text: public

text: wine grape

text: Arinto

characteristic: cultivar

text: Arinto (Sequencing data no. 3 of 3)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Arinto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Assaraky

text: Assaraky (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Assaraky


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Assaraky

text: Assaraky (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Assaraky


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Bastardo

text: Bastardo (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Bastardo

characteristic: title


text: public

text: wine grape

text: Bastardo

characteristic: cultivar

text: Bastardo (Sequencing data no. 2 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Bastardo


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Bical

text: Bical

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Bical


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Borra�al

text: Borra�al

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Borra�al


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Camarate

text: Camarate

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Camarate


text: public

text: wine grape

text: Castelao

characteristic: cultivar

text: Castelao

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Castelao

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Cerceal Branco

text: Mature

text: Portugal

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Cercial

text: Cercial

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Cercial


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Chenin

text: Chenin

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Chenin


text: public

text: wine grape

text: Colombard

characteristic: cultivar

text: Colombard

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Colombard


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Dona Maria

text: Dona Maria

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Dona Maria

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Espadeiro

text: Espadeiro (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Espadeiro


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Espadeiro

text: Espadeiro (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Espadeiro


text: public

text: wine grape

text: Fernao Pires

characteristic: cultivar

text: Fernao_Pires_1 (Sequencing data no. 1 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Fernao Pires

text: Fernao_Pires_1 (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Fernao Pires

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Gamay

text: Gamay

text: Mature

text: Portugal

text: UTAD collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Gamay


text: public

text: wine grape

text: Gewurztraminer

characteristic: cultivar

text: Gewurztraminer (Sequencing data no. 1 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: UTAD collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Gewurztraminer


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Gewurztraminer

text: Gewurztraminer (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Gewurztraminer


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Gouveio

text: Gouveio

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Gouveio


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Grenache

text: Grenache

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Grenache

characteristic: title


text: public

text: wine grape

text: Loureiro

characteristic: cultivar

text: Loureiro

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Loureiro


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Malvasia Fina

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Melhorio

text: Melhorio (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Melhorio


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Moreto

text: Moreto

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Moreto


text: public

text: wine grape

text: Moscatel Galego Tinto

characteristic: cultivar

text: Moscatel_Galego_Tinto (Sequencing data no. 1 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Moscatel Galego Tinto

text: Moscatel_Galego_Tinto (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Moscatel Graudo

text: Moscatel_Graudo (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Negra Mole

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf


text: public

text: wine grape

text: Pinot Blanc

characteristic: cultivar

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Pinot Gris

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: title


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Riesling

text: Riesling (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Riesling


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Riesling

text: Riesling (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Riesling


text: public

text: wine grape

text: Roussanne Blanc

characteristic: cultivar

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Sauvignon Blanc

text: Mature

text: Portugal

text: UTAD collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Siria

text: Siria

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Siria

characteristic: title


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Sylvaner

text: Sylvaner

text: Mature

text: Portugal

text: UTAD collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Sylvaner


text: public

text: wine grape

text: Tinta Mi�da

characteristic: cultivar

text: Tinta_Miuda (Sequencing data no. 1 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Tinta Mi�da

text: Tinta_Miuda (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Tinto C�o

text: Tinto _Cao

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Tinto _Cao


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Touriga Franca

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: title


text: public

text: wine grape

text: Touriga Nacional

characteristic: cultivar

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

characteristic: isolation source

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: wine grape

text: Trajadura

text: Trajadura

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

characteristic: organism

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Trajadura


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: wine grape

text: Trincadeira

text: Trincadeira

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf

text: Trincadeira


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: wine grape

characteristic: common name

text: Verdelho

text: Verdelho

text: Mature

text: Portugal

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

text: Verdelho


text: public

text: wine grape

text: Vinhao

characteristic: cultivar

text: Vinhao

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

characteristic: geographic location (country and/or sea)

text: PORVID collection, Portugal

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

text: Vinhao

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Iberica_1 (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: Wild sample

characteristic: isolation source

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Iberica_1 (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis vinifera subsp. sylvestris

characteristic: organism

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Iberica_2 (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

characteristic: sub species

text: Leaf


text: public

text: Iberica_2 (Sequencing data no. 2 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: Wild sample

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf

characteristic: tissue type


characteristic: ENA-CHECKLIST

text: public

text: Iberica_3 (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

characteristic: geographic location (country and/or sea)

text: Wild sample

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Iberica_3 (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf


characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Iberica_4 (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: Wild sample

characteristic: isolation source

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Iberica_4 (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis vinifera subsp. sylvestris

characteristic: organism

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: Mature

text: Portugal

text: Wild sample

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Vitis vinifera subsp. sylvestris

text: Leaf


text: public

text: wine grape

characteristic: common name

text: Escaped_sativa (Sequencing data no. 1 of 3)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: Wild sample

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

characteristic: sub species

text: Leaf


characteristic: ENA-CHECKLIST

text: public

text: wine grape

text: Escaped_sativa (Sequencing data no. 2 of 3)

text: Mature

text: Portugal

characteristic: geographic location (country and/or sea)

text: Wild sample

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf

characteristic: tissue type

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: wine grape

text: Escaped_sativa (Sequencing data no. 3 of 3)

text: Mature

text: Portugal

text: Wild sample

text: Vitis vinifera

text: Vitis vinifera

text: Vitis vinifera subsp. vinifera

text: Leaf


text: UNIVERSITY OF SASSARI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF SASSARI

text: Rattus norvegicus

characteristic: host scientific name

text: rat gut metagenome

text: rat gut metagenome


text: public

characteristic: SRA accession

tag: Namespace:FRENCH NATIONAL INSTITUTE FOR AGRONOMICAL RESEARCH (INRA)

characteristic: Submitter Id

characteristic: collection date

text: France

text: healthy

characteristic: host health state

text: Homo sapiens

text: cereus

characteristic: isolate

text: Human

characteristic: isolation source

text: Bacillus cereus

characteristic: organism

text: Bacillus cereus

text: Clinical strains of Bacillus cereus


characteristic: ENA-CHECKLIST

text: FRENCH NATIONAL INSTITUTE FOR AGRONOMICAL RESEARCH (INRA)

text: public

text: France

characteristic: geographic location (country and/or sea)

text: healthy

text: Homo sapiens

text: cereus

text: Human

text: Bacillus cereus

text: Bacillus cereus

text: Clinical strains of Bacillus cereus


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CALIFORNIA AT BERKELEY

text: public

tag: Namespace:UNIVERSITY OF CALIFORNIA AT BERKELEY

text: honeycomb rockfish

characteristic: common name

text: Sebastes umbrosus

text: Sebastes umbrosus

characteristic: specimen voucher

text: muscle

characteristic: tissue type

text: Rockfish Genome Project, 2018-2021

characteristic: title


Lagocephalus sceleratus1

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: HCMR-IMBBC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Lagocephalus sceleratus1

text: silver-cheeked toadfish

text: Lagocephalus sceleratus

text: Lagocephalus sceleratus

text: female

characteristic: sex

text: blood

text: Sample of blood tissue


text: HCMR-IMBBC

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: silver-cheeked toadfish

text: Lagocephalus sceleratus

text: Lagocephalus sceleratus

text: female

text: blood

text: Sample from blood tissue


text: UMR CNRS 5557 Ecologie Microbienne

text: public

tag: Namespace:UMR CNRS 5557 Ecologie Microbienne

text: metagenome

characteristic: organism

text: metagenome


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

text: public

tag: Namespace:Vestfold Hospital Trust

text: not provided

characteristic: collection date

text: n=patient number; i = middle jejunal segment

characteristic: description

text: digestive tract environment [ENVO:01001033]

characteristic: environment (biome)

text: human associated habitat [ENVO:00009003]

characteristic: environment (feature)

text: bodily fluid material [ENVO:02000019]

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

characteristic: investigation type

text: human gut metagenome

text: Investigating the human jejunal microbiota

characteristic: project name

text: human gut metagenome

text: targeted amplicon sequencing

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: n=patient number; j = upper jejunal segment

text: bodily fluid material [ENVO:02000019]

text: Norway

characteristic: geographic location (country and/or sea)

text: human-gut

text: human gut metagenome

text: human gut metagenome

text: targeted amplicon sequencing

characteristic: title


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Negative control 1, sequencing run 1

characteristic: description

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

text: indoor metagenome

characteristic: organism

text: indoor metagenome

text: targeted amplicon sequencing


text: Vestfold Hospital Trust

text: public

text: not provided

text: Negative control 1, sequencing run 2

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

characteristic: investigation type

text: indoor metagenome

characteristic: project name

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: not provided

text: Negative control 1, sequencing run 3

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Negative control 1, sequencing run 4

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

characteristic: geographic location (country and/or sea)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: title


text: Vestfold Hospital Trust

text: public

text: not provided

text: Negative control 2, sequencing run 1

characteristic: description

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: indoor metagenome

characteristic: organism

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Negative control 2, sequencing run 2

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

characteristic: investigation type

text: indoor metagenome

characteristic: project name

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

characteristic: collection date

text: Negative control 2, sequencing run 3

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: sequencing method


text: Vestfold Hospital Trust

text: public

text: not provided

text: Negative control 2, sequencing run 4

characteristic: description

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Negative control 3, sequencing run 1

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

characteristic: human gut environmental package

text: indoor metagenome

characteristic: organism

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Negative control 3, sequencing run 2

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

characteristic: investigation type

text: indoor metagenome

characteristic: project name

text: indoor metagenome

text: targeted amplicon sequencing


text: Vestfold Hospital Trust

text: public

text: not provided

characteristic: collection date

text: Weak positive control 1, sequencing run 1

characteristic: description

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: sequencing method


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Weak positive control 1, sequencing run 2

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

characteristic: geographic location (longitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: title


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Weak positive control 1, sequencing run 3

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

characteristic: human gut environmental package

text: indoor metagenome

characteristic: organism

text: indoor metagenome

text: targeted amplicon sequencing


text: Vestfold Hospital Trust

text: public

text: not provided

characteristic: collection date

text: Weak positive control 1, sequencing run 4

characteristic: description

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

text: human-gut

characteristic: investigation type

text: indoor metagenome

characteristic: project name

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Weak positive control 2, sequencing run 1

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

characteristic: geographic location (latitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: sequencing method


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Weak positive control 2, sequencing run 2

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

characteristic: geographic location (longitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: title


text: Vestfold Hospital Trust

text: public

text: not provided

characteristic: collection date

text: Weak positive control 2, sequencing run 3

characteristic: description

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

text: human-gut

characteristic: human gut environmental package

text: indoor metagenome

characteristic: organism

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Vestfold Hospital Trust

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Weak positive control 2, sequencing run 4

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

text: human-gut

characteristic: investigation type

text: indoor metagenome

characteristic: project name

text: indoor metagenome

text: targeted amplicon sequencing


characteristic: ENA-CHECKLIST

text: Vestfold Hospital Trust

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: not provided

text: Weak positive control 3, sequencing run 1

text: laboratory facility [ENVO:01001406]

text: laboratory environment [ENVO:01001405]

text: Norway

characteristic: geographic location (latitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: sequencing method


text: Vestfold Hospital Trust

text: public

text: not provided

characteristic: collection date

text: Weak positive control 3, sequencing run 2

characteristic: description

text: laboratory facility [ENVO:01001406]

characteristic: environment (feature)

text: laboratory environment [ENVO:01001405]

characteristic: environment (material)

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (longitude)

text: human-gut

text: indoor metagenome

text: indoor metagenome

text: targeted amplicon sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN

text: human

characteristic: common name

text: H3.3K27M; Treatment-naïve tumor biopsy

text: Homo sapiens

characteristic: organism

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: EUROPEAN RESEARCH INSTITUTE FOR THE BIOLOGY OF AGEING, UNIVERSITY OF GRONINGEN, UNIVERSITY MEDICAL CENTER GRONINGEN

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: H3.3K27M; Treatment-naïve tumor biopsy

text: Homo sapiens

text: Homo sapiens


text: MEDIZNISCHE HOCHSCHULE HANNOER

text: public

text: airways of a cystic fibrosis patient

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: MEDIZNISCHE HOCHSCHULE HANNOER

text: public

text: river in Mühlheim, Germany

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

tag: Namespace:GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: RNASeq raw reads from Pseudoterranova bulbosa isolated from viscera of Atlantic Cod (Gadus morhua)

characteristic: description

text: Pseudoterranova bulbosa

text: Pseudoterranova bulbosa


text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Pseudoterranova bulbosa

text: Pseudoterranova bulbosa

text: Pseudoterranova bulbosa isolated from viscera of Atlantic Cod (Gadus morhua)


text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: RNASeq raw reads from Pseudoterranova bulbosa isolated from liver of Atlantic Cod (Gadus morhua)

text: Pseudoterranova bulbosa

text: Pseudoterranova bulbosa


text: GOETHE UNIVERSITY OF FRANKFURT AM MAIN

text: public

text: Pseudoterranova bulbosa

text: Pseudoterranova bulbosa

text: Pseudoterranova bulbosa isolated from liver of Atlantic Cod (Gadus morhua)


text: public

tag: Namespace:MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: collection date

text: hairy bittercress

text: Wild type C. Hirsuta fruit sample (seeds removed) for RNA-Seq. Replicate A. This replicate was excluded from the analysis.

text: Wild Type

characteristic: genotype

text: not provided

characteristic: geographic location (latitude)

text: not provided

text: All plants were grown in long day conditions in the greenhouse: 16 h at 22°C: 8 h at 20°C, light : dark

characteristic: isolation and growth condition

text: Cardamine hirsuta

text: Wild Type

characteristic: organism phenotype

text: Fruit stage 17ab

characteristic: plant developmental stage

text: compost soil

characteristic: plant growth medium

text: Fruit (seeds and septum tissue dissected out)

characteristic: plant structure

text: Cardamine hirsuta

text: C. Hirsuta wild type fruit sample (Ox-A)(Excluded)


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: hairy bittercress

text: Wild type C. Hirsuta fruit sample (seeds removed) for RNA-Seq. Replicate B

text: Wild Type

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: Cardamine hirsuta

text: Wild Type

text: Fruit stage 17ab

text: compost soil

text: Cardamine hirsuta

text: C. Hirsuta wild type fruit sample (Ox-B)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: hairy bittercress

characteristic: common name

text: Wild type C. Hirsuta fruit sample (seeds removed) for RNA-Seq. Replicate C

text: Wild Type

text: not provided

text: not provided

text: Cardamine hirsuta

characteristic: organism

text: Wild Type

text: Fruit stage 17ab

text: compost soil

text: Cardamine hirsuta

text: C. Hirsuta wild type fruit sample (Ox-C)


text: public

characteristic: collection date

text: hairy bittercress

text: C. Hirsuta valveless (ful-1) mutant fruit sample (seeds removed) for RNA-Seq. Replicate A.

characteristic: description

text: EMS induced C to T nucleotide substitution in the C. hirsuta MADS-box gene FRUITFULL (FUL, C.hirsuta gene identifier CARHR274590) was identified which introduces a premature stop codon that results in a truncated 143 amino acid protein.

characteristic: genetic modification

characteristic: genotype

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: isolation and growth condition

text: Cardamine hirsuta

text: valveless (Fruit lacked valves)

characteristic: organism phenotype

text: Fruit stage 17ab

characteristic: plant developmental stage

text: compost soil

text: Cardamine hirsuta

text: C. Hirsuta valveless (ful-1) mutant fruit sample (val-A)


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: hairy bittercress

text: C. Hirsuta valveless (ful-1) mutant fruit sample (seeds removed) for RNA-Seq. Replicate B.

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: Cardamine hirsuta

text: valveless (Fruit lacked valves)

text: Fruit stage 17ab

text: compost soil

characteristic: plant growth medium

characteristic: plant structure

text: Cardamine hirsuta

text: C. Hirsuta valveless (ful-1) mutant fruit sample (val-B)


characteristic: ENA-CHECKLIST

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: hairy bittercress

characteristic: common name

text: C. Hirsuta valveless (ful-1) mutant fruit sample (seeds removed) for RNA-Seq. Replicate C.

text: not provided

text: not provided

text: Cardamine hirsuta

characteristic: organism

text: valveless (Fruit lacked valves)

text: Fruit stage 17ab

text: compost soil

text: Cardamine hirsuta

text: C. Hirsuta valveless (ful-1) mutant fruit sample (val-C)

characteristic: title


text: public

characteristic: collection date

text: hairy bittercress

text: C. Hirsuta CRISPR/Cas9 mutant ind-1 fruit sample (seeds removed) for RNA-Seq. Replicate A.

characteristic: description

text: CRISPR/Cas9 editing of gene C.hirsuta gene IND (CARHR248170) with a single nucleotide insertion at position 361 bp of the coding sequence which introduces a frame shift at amino acid position 121 and a premature stop codon, producing a truncated protein of 182 amino acids with 62 amino acids of nonsense protein sequence at the C-terminus.

characteristic: genetic modification

characteristic: genotype

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: isolation and growth condition

text: Cardamine hirsuta

text: Plants homozygous for the recessive C. hirsuta ind-1 allele produced non-explosive, indehiscent fruit. These valves can coil when manually detached from the replum, but fail to eject the seeds.

characteristic: organism phenotype

text: Fruit stage 17ab

characteristic: plant developmental stage

text: compost soil

text: Cardamine hirsuta

text: C. Hirsuta CRISPR/Cas9 mutant ind-1 fruit sample (chind-A)


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: hairy bittercress

text: C. Hirsuta CRISPR/Cas9 mutant ind-1 fruit sample (seeds removed) for RNA-Seq. Replicate B.

text: not provided

text: not provided

characteristic: geographic location (longitude)

text: All plants were grown in long day conditions in the greenhouse: 16 h at 22°C: 8 h at 20°C, light : dark

text: Cardamine hirsuta

text: Fruit stage 17ab

text: compost soil

characteristic: plant growth medium

text: Fruit (seeds and septum tissue dissected out)

characteristic: plant structure

text: Cardamine hirsuta

text: C. Hirsuta CRISPR/Cas9 mutant ind-1 fruit sample (chind-B)


characteristic: ENA-CHECKLIST

text: MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: hairy bittercress

characteristic: common name

text: C. Hirsuta CRISPR/Cas9 mutant ind-1 fruit sample (seeds removed) for RNA-Seq. Replicate C.

text: not provided

text: not provided

text: Cardamine hirsuta

characteristic: organism

text: Fruit stage 17ab

text: compost soil

text: Cardamine hirsuta

characteristic: title


CECT 9249

text: UVEG

text: public

text: CECT 9249

characteristic: collection date

text: CECT 9249

characteristic: culture collection

text: Spain

characteristic: geographic location (country and/or sea)

text: Barcelona, Cornellà

characteristic: geographic location (region and locality)

text: AB16; 161107 CRN 1

characteristic: isolate

text: drinking water from distribution network

characteristic: isolation source

text: Paenibacillus sp. CECT 9249

text: Paenibacillus sp. CECT 9249

text: CECT 9249

characteristic: strain

text: Paenibacillus sp. CECT 9249


CECT 9278

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UVEG

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CECT 9278

text: CECT 9278

text: Spain

text: Barcelona

text: AB11; 160606 SFS 39

text: water from drinking water treatment plant process

text: Roseomonas sp. CECT 9278

text: Roseomonas sp. CECT 9278

text: CECT 9278

text: Roseomonas sp. CECT 9278


characteristic: ENA-CHECKLIST

text: DEPT OF MICROBIOLOGY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:DEPT OF MICROBIOLOGY

text: Greece

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: DEPT OF MICROBIOLOGY

text: public

characteristic: Submitter Id

characteristic: collection date

text: Greece

text: healthy

text: Homo sapiens

text: Human

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: title


text: Universitaetsklinikum Freiburg

text: public

text: clinical material

text: South Africa

characteristic: geographic location (country and/or sea)

text: Cape Town

characteristic: geographic location (region and locality)

text: not provided

text: homo sapiens

characteristic: isolate

text: clinical material

text: -33.97, 18.57

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli MBIRA


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Universitaetsklinikum Freiburg

text: public

text: clinical material

text: South Africa

text: Cape Town

text: not provided

text: homo sapiens

text: clinical material

text: -33.97, 18.57

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae

characteristic: strain

text: Klebsiella pneumoniae MBIRA


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: macrophage

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Human THP-1 monocytic cells (ATCC) were grown in RPMI 1640 (Sigma-Aldrich) supplemented with 10% heat-activated fetal calf serum (FCS), 2 mM L-glutamine, 100 nM penicillin/streptomycin (Thermo Fisher Scientific), and 50 μM β-mercaptoethanol (Sigma-Aldrich) and cultured at 37°C in a 5% CO2 atmosphere. THP-1 cells were differentiated with 50 ng/ml phorbol-12-myristate-13-acetate (PMA; Sigma-Aldrich, Darmstadt, Germany) overnight (16 hours) and rested in a PMA-free medium for 48 hours before further experiments LPS K12 (TLR4; tlrl-eklps; Invivogen, 200 ng/ml) Total RNA was extracted using QIAzol (79306; Qiagen, Germany), followed by DNAse digestion (Qiagen, Germany) treatment on the RNeasy Mini columns, according to the manufacturer’s protocol. The amount of total RNA was quantified using the Qubit 2.0 Fluorometric Quantitation system (Thermo Fisher Scientific, Waltham, MA, USA), and the RNA integrity number (RIN) was determined using the Experion Automated Electrophoresis System (Bio-Rad, Hercules, CA, USA). RNA-seq libraries were prepared with the TruSeq Stranded mRNA LT sample preparation kit (Illumina, San Diego, CA, USA) using Sciclone and Zephyr liquid handling workstations (PerkinElmer, Waltham, MA, USA) for pre- and post-PCR steps, respectively. Library concentrations were quantified with the Qubit 2.0 Fluorometric Quantitation system (Life Technologies, Carlsbad, CA, USA). The size distribution was assessed using the Experion Automated Electrophoresis System (Bio-Rad, Hercules, CA, USA). For sequencing, samples were diluted and pooled into NGS libraries in equimolar amounts.

characteristic: description

text: infant

characteristic: developmental stage

text: acute monocytic leukemia

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: monocyte

characteristic: progenitor cell type

text: Homo sapiens

text: liposaccharide

characteristic: stimulus


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Department of Clinical and Molecular Medicine, Norwegian University of Science and Technology

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: macrophage

text: human

text: infant

text: acute monocytic leukemia

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: monocyte

text: Homo sapiens

text: liposaccharide

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: macrophage

characteristic: cell type

text: human

text: Protocols: Human THP-1 monocytic cells (ATCC) were grown in RPMI 1640 (Sigma-Aldrich) supplemented with 10% heat-activated fetal calf serum (FCS), 2 mM L-glutamine, 100 nM penicillin/streptomycin (Thermo Fisher Scientific), and 50 μM β-mercaptoethanol (Sigma-Aldrich) and cultured at 37°C in a 5% CO2 atmosphere. THP-1 cells were differentiated with 50 ng/ml phorbol-12-myristate-13-acetate (PMA; Sigma-Aldrich, Darmstadt, Germany) overnight (16 hours) and rested in a PMA-free medium for 48 hours before further experiments Total RNA was extracted using QIAzol (79306; Qiagen, Germany), followed by DNAse digestion (Qiagen, Germany) treatment on the RNeasy Mini columns, according to the manufacturer’s protocol. The amount of total RNA was quantified using the Qubit 2.0 Fluorometric Quantitation system (Thermo Fisher Scientific, Waltham, MA, USA), and the RNA integrity number (RIN) was determined using the Experion Automated Electrophoresis System (Bio-Rad, Hercules, CA, USA). RNA-seq libraries were prepared with the TruSeq Stranded mRNA LT sample preparation kit (Illumina, San Diego, CA, USA) using Sciclone and Zephyr liquid handling workstations (PerkinElmer, Waltham, MA, USA) for pre- and post-PCR steps, respectively. Library concentrations were quantified with the Qubit 2.0 Fluorometric Quantitation system (Life Technologies, Carlsbad, CA, USA). The size distribution was assessed using the Experion Automated Electrophoresis System (Bio-Rad, Hercules, CA, USA). For sequencing, samples were diluted and pooled into NGS libraries in equimolar amounts.

text: infant

text: acute monocytic leukemia

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: monocyte

text: Homo sapiens


text: Royal Botanical Gardens, Kew

text: public

tag: Namespace:Royal Botanical Gardens, Kew

text: Leeuwenberg, A.J.M.

characteristic: collected by

characteristic: collection date

characteristic: collectorNo

text: K

characteristic: isolation source

text: Cordia myxa

text: Cordia myxa

text: Leeuwenberg, A.J.M. 7592 (K)

characteristic: specimen voucher

text: Cordia myxa


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: unidentified

text: unidentified

text: Solandra sp. - nan


text: Royal Botanical Gardens, Kew

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: bio material

text: Pullen, R.

text: Ehretia microphylla

characteristic: organism

text: Ehretia microphylla

text: Pullen, R. 6809 (K); K000062263

text: Ehretia microphylla

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Millar, A.N.

text: Hymenosporum flavum

text: Hymenosporum flavum

text: NGF. 38342 (K); K000062242

text: Hymenosporum flavum


text: Royal Botanical Gardens, Kew

text: public

text: Chase, M.W.

characteristic: collected by

text: K

text: Alepidea natalensis

text: Alepidea natalensis

text: Chase, M.W. 6527 (K)

text: Alepidea natalensis


text: Royal Botanical Gardens, Kew

text: public

text: Al-Kaisi

characteristic: collectorNo

text: K

text: Ergocarpon cryptanthum

text: Ergocarpon cryptanthum

text: Al-Kaisi 48729 (K)

text: Ergocarpon cryptanthum


text: Royal Botanical Gardens, Kew

text: public

text: Osborne, J.

characteristic: isolation source

text: Lomatocarpa albomarginata

text: Lomatocarpa albomarginata

text: Osborne, J. 519 (K); K000493579

text: Lomatocarpa albomarginata


text: Royal Botanical Gardens, Kew

text: public

text: Sheahan, M-C.

text: K

text: Meum athamanticum

text: Meum athamanticum

text: Sheahan, M-C. 228 (K)

characteristic: specimen voucher

text: Meum athamanticum


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: Chase, M.W.

text: K

text: Hermas villosa

text: Hermas villosa

text: Chase, M.W. 5803 (K)

text: Hermas villosa


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

text: public

text: Chase, M.W.

text: K

text: Polemanniopsis marlothii

text: Polemanniopsis marlothii

text: Chase, M.W. 5804 (K)

text: Polemanniopsis marlothii


text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

text: Reeves, G.

text: NBG

text: Steganotaenia araliacea

text: Steganotaenia araliacea

text: Reeves, G. 51 (NBG)

text: Steganotaenia araliacea


text: Royal Botanical Gardens, Kew

text: public

characteristic: INSDC status

text: Chase, M.W.

text: K

text: Smyrnium perfoliatum

text: Smyrnium perfoliatum

text: Chase, M.W. 10168 (K)

text: Smyrnium perfoliatum


text: Royal Botanical Gardens, Kew

text: public

characteristic: SRA accession

characteristic: collection date

text: Stachys sylvatica

text: Stachys sylvatica

text: Rahman, M.A.; Alam, M.K.; Das, S.; Hossain, Z. 1569 (K); K000370407

text: Stachys sylvatica


text: Royal Botanical Gardens, Kew

text: public

characteristic: Submitter Id

text: Al-Kaisi; Hamad, K.

text: K

text: unidentified

text: unidentified

text: Al-Kaisi; Hamad, K. 43565 (K)

text: Pycnocycla flabellifolia


text: Royal Botanical Gardens, Kew

text: public

characteristic: bio material

text: Pillans, N.S.

text: Glia prolifera

characteristic: organism

text: Glia prolifera

text: Pillans, N.S. 4322 (K); K000544163

text: Glia prolifera


characteristic: ENA-LAST-UPDATE

text: Royal Botanical Gardens, Kew

text: public

text: Citarda

text: unidentified

text: unidentified

text: Citarda 1011 (K); K000544160

text: Bonannia graeca

characteristic: title


characteristic: External Id

text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

text: public

text: Fiori, A.

text: unidentified

text: unidentified

text: Fiori, A. 2906 (K); K000544164

text: Grafia sp. - Fiori, A. 2906 (K); K000544164


text: Royal Botanical Gardens, Kew

characteristic: INSDC first public

text: public

text: Field, H.; Lazar, Y.

characteristic: collected by

text: Oliveria decumbens

text: Oliveria decumbens

text: Field, H.; Lazar, Y. 527 (K); K000544167

text: Oliveria decumbens


text: Royal Botanical Gardens, Kew

text: public

text: Rohlena

text: s.n.

characteristic: collectorNo

characteristic: isolation source

text: Portenschlagiella ramosissima

text: Portenschlagiella ramosissima

text: Rohlena s.n. (K); K000374000

text: Portenschlagiella ramosissima


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: Lester-Garland, L.V.

text: s.n.

text: Ptychotis saxifraga

text: Ptychotis saxifraga

text: Lester-Garland, L.V. s.n. (K); K000374001

characteristic: specimen voucher

text: Ptychotis saxifraga


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

text: Goode, R.H.

text: Xanthosia pilosa

text: Xanthosia pilosa

text: Goode, R.H. 445 (K); K000374012

text: Xanthosia pilosa


text: Royal Botanical Gardens, Kew

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Rechinger, K.H.

text: Prangos eriantha

text: Prangos eriantha

text: Rechinger, K.H. 14923 (K); K000994190

text: Prangos eriantha


text: Royal Botanical Gardens, Kew

text: public

characteristic: Submitter Id

characteristic: collection date

text: Xiphidium caeruleum

text: Xiphidium caeruleum

text: RBG Kew Living Collection 1994-2177

text: Xiphidium caeruleum


text: Royal Botanical Gardens, Kew

text: public

characteristic: bio material

text: Ortiz, A.; Montesdeoca, M.

text: unidentified

characteristic: organism

text: unidentified

text: Ortiz, A.; Montesdeoca, M. 16 (K); K001275400

text: Geogenanthus rhizanthus


characteristic: ENA-LAST-UPDATE

text: Royal Botanical Gardens, Kew

text: public

text: Du, N.V.; Quang, B.H.; Chinh, V.T.; The, P.V.; de Kok, R.; Xanthos, M.D.; Moore, A.; Sinou, C.J.A.M.; Clark, R.P.; Little, P.I.

text: Streptolirion volubile

text: Streptolirion volubile

text: HNK 2747 (K); K001393148

text: Streptolirion volubile

characteristic: title


characteristic: External Id

text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

text: public

text: Chase, M.W.

text: unidentified

text: unidentified

text: Chase, M.W. 618 (K)

text: Matudanthus nanus


text: Royal Botanical Gardens, Kew

characteristic: INSDC first public

text: public

text: HNK

characteristic: collected by

text: unidentified

text: unidentified

text: HNK 1300 (K); K001393064

text: Spatholirion sp. - HNK 1300 (K); K001393064


text: Royal Botanical Gardens, Kew

text: public

text: Goldman, D.

characteristic: collectorNo

characteristic: isolation source

text: Tinantia anomala

text: Tinantia anomala

text: Goldman, D. 2269 (BH)

text: Tinantia anomala


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: PERTH 8804273

text: K:Silica_dried:PERTH 8804273

text: Macropidia fuliginosa

text: Macropidia fuliginosa

text: Smith, R.J., Hopper, S.D. & Sweedman, L. 176 (K); PERTH 8804273

characteristic: specimen voucher

text: Macropidia fuliginosa


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

text: Chase, M.W.

text: Lachnanthes caroliniana

text: Lachnanthes caroliniana

text: Chase, M.W. 2910 (K)

text: Lachnanthes caroliniana


text: Royal Botanical Gardens, Kew

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Brazil

characteristic: geographic location (country and/or sea)

text: Schiekia orinocensis

text: Schiekia orinocensis

text: Zappi, D.C.; Frisby, S.; Forte, A.F.; Lindolfo, L.F. 3091.0 (K); K000747323

text: Schiekia orinocensis


text: Royal Botanical Gardens, Kew

text: public

characteristic: Submitter Id

characteristic: bio material

text: Miyoshi Furuse

text: Titanotrichum oldhamii

text: Titanotrichum oldhamii

text: Miyoshi Furuse 4434 (K); K001208602

text: Titanotrichum oldhamii


characteristic: ENA-LAST-UPDATE

text: Royal Botanical Gardens, Kew

text: public

text: Farges, R.P.

text: s.n.

text: Melanosciadium pimpinelloideum

characteristic: organism

text: Melanosciadium pimpinelloideum

text: Farges, R.P. s.n. (K); K000980169

text: Melanosciadium pimpinelloideum


characteristic: External Id

text: Royal Botanical Gardens, Kew

text: public

text: Harley, R.M.

characteristic: collection date

text: Klotzschia brasiliensis

text: Klotzschia brasiliensis

text: Harley, R.M. 20973 (K); K001130734

text: Klotzschia brasiliensis

characteristic: title


text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Archibald, J.C.

characteristic: collected by

text: Diplotaenia cachrydifolia

text: Diplotaenia cachrydifolia

text: Archibald, J.C. 2390 (K); K000370456

text: Diplotaenia cachrydifolia


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: Kennedy, E.W.

characteristic: collectorNo

characteristic: isolation source

text: unidentified

text: unidentified

text: Kennedy, E.W. 174 (K); K000374047

text: Spiroceratium bicknellii


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

text: Szovitsia callicarpa

text: Szovitsia callicarpa

text: Szovitsia callicarpa


text: Royal Botanical Gardens, Kew

text: public

characteristic: INSDC status

characteristic: SRA accession

text: unidentified

text: unidentified

text: Triceratella drummondii


text: Royal Botanical Gardens, Kew

text: public

characteristic: Submitter Id

text: Kubitzki & Rohwer

text: HBG

text: Pentamerista neotropica

text: Pentamerista neotropica

text: 91-23 (HBG)

characteristic: specimen voucher

text: Pentamerista neotropica


characteristic: ENA-LAST-UPDATE

text: Royal Botanical Gardens, Kew

text: public

characteristic: bio material

text: Alston, A.H.G.; Sandwith, N.Y.

text: poison hemlock

characteristic: common name

text: Conium maculatum

text: Conium maculatum

text: Alston, A.H.G.; Sandwith, N.Y. 1.105 (K); K001275327

text: Conium maculatum


characteristic: External Id

text: Royal Botanical Gardens, Kew

text: public

text: Lemperg, F.L.

characteristic: collection date

text: Turgenia latifolia

characteristic: organism

text: Turgenia latifolia

text: Lemperg, F.L. 1023 (K); K001275328

text: Turgenia latifolia


text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Stainton, J. D.A.

text: Tordylium apulum

text: Tordylium apulum

text: Stainton, J. D.A. 7248 (K); K001275329

text: Tordylium apulum

characteristic: title


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: Townsend, C.C.

characteristic: collected by

text: Scaligeria napiformis

text: Scaligeria napiformis

text: 87/5 (K); K001275332

text: Scaligeria napiformis


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

text: public

characteristic: isolation source

text: unidentified

text: unidentified

text: Scandix grandiflora


text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Hooper, S.H.

text: Thapsia garganica

text: Thapsia garganica

text: Thapsia garganica


text: Royal Botanical Gardens, Kew

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Platt, J.W.O.

characteristic: collectorNo

text: Ridolfia segetum

text: Ridolfia segetum

text: Platt, J.W.O. 297 (K); K001275333

text: Ridolfia segetum


characteristic: ENA-LAST-UPDATE

text: Royal Botanical Gardens, Kew

text: public

characteristic: bio material

text: Alston, A.H.G.; Sandwith, N.Y.

text: Opopanax hispidus

text: Opopanax hispidus

text: Alston, A.H.G.; Sandwith, N.Y. 1.067 (K); K001275334

characteristic: specimen voucher

text: Opopanax hispidus


characteristic: External Id

text: Royal Botanical Gardens, Kew

text: public

text: Univer, C.

characteristic: collection date

text: unidentified

text: unidentified

text: Univer, C. 3.8 (K); K001275335

text: Siler montanum


text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

text: public

text: Pimenov, M.G.

text: unidentified

characteristic: organism

text: unidentified

text: Johrenia sp. - nan; K001275337


text: Royal Botanical Gardens, Kew

characteristic: INSDC first public

text: public

text: Townsend, C.C.

text: Lagoecia cuminoides

text: Lagoecia cuminoides

text: 63/5 (K); K001275336

text: Lagoecia cuminoides

characteristic: title


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: Engstrand

characteristic: collected by

text: unidentified

text: unidentified

text: Geocaryum sp. - nan; K001275339


characteristic: ENA-FIRST-PUBLIC

text: Royal Botanical Gardens, Kew

text: public

text: Rechinger,K.H.

characteristic: isolation source

text: unidentified

text: unidentified

text: Rechinger,K.H. 17026 (K); K001275340

text: Ferulago serpentinica


text: Royal Botanical Gardens, Kew

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Townsend, C.C.

text: Ferula glauca

text: Ferula glauca

text: 72/18 (K); K001275341

text: Ferula glauca


text: Royal Botanical Gardens, Kew

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Davis, P.H.

text: unidentified

text: unidentified

text: Davis, P.H. 941 (K); K001275342

text: Eryngium amorginum


characteristic: ENA-LAST-UPDATE

text: Royal Botanical Gardens, Kew

text: public

characteristic: collectorNo

text: Caucalis platycarpos

text: Caucalis platycarpos

text: Schleich??, M.; Ancher-Eloy-Herbier d'Orient 3651 (K); K001275343

text: Caucalis platycarpos


text: Royal Botanical Gardens, Kew

text: public

characteristic: bio material

text: Stainton, J.D.A.

text: Cachrys cristata

text: Cachrys cristata

text: Stainton, J.D.A. 7653 (K); K001275344

characteristic: specimen voucher

text: Cachrys cristata


characteristic: External Id

text: Royal Botanical Gardens, Kew

text: public

text: Univer, C.

characteristic: collection date

text: Physospermum cornubiense

text: Physospermum cornubiense

text: H80 (K); K001275346

text: Physospermum cornubiense


text: Royal Botanical Gardens, Kew

characteristic: INSDC center name

text: public

text: Jedd, H.G.

text: Cnidium silaifolium

characteristic: organism

text: Cnidium silaifolium

text: Jedd, H.G. 1523 (K); K001275347

text: Cnidium silaifolium


text: Royal Botanical Gardens, Kew

characteristic: INSDC first public

text: public

text: Freyn, J.

text: Orlaya daucorlaya

text: Orlaya daucorlaya

text: Freyn, J. 328 (K); K001275348

text: Orlaya daucorlaya

characteristic: title


characteristic: ENA-CHECKLIST

text: Royal Botanical Gardens, Kew

text: public

text: Heteranthera zosterifolia

text: Heteranthera zosterifolia

text: Heteranthera zosterifolia


E-MTAB-10501:Sample 1

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10501:Sample 1

tag: Namespace:UNIVERSITY OF MANCHESTER

text: 11 to 13

unit: week

characteristic: age

text: ArrayExpress

characteristic: broker name

text: gastrointestinal tract (lamina propria) macrophage

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Mice were infected with 150 infective T. muris eggs in 200ul by oral gavage. Mice were culled at day 35 post infection via exposure to increasing carbon dioxide levels, an approved schedule 1 method as specified within the guidelines of the Animals (Scientific Procedures) Act. Cells were isolated as previously described with some modifications ( PubMed PMID: 17620362). In brief, after dissection of the caecum and colon, the colonic patch was removed from the tip of the caecum and all adherent adipose tissue removed from the tissue. The caecum and colon were cut longitudinally and washed thoroughly with pre-chilled PBS on ice. To remove intestinal epithelial cells and leukocytes, the tissue was incubated in prewarmed media (RPMI 1640) supplemented with 3% FCS (Sigma-Aldrich), 20 mM Hepes (Sigma-Aldrich), 5 mM EDTA (VWR, UK), and 1 mM freshly thawed dithiothreitol (Sigma-Aldrich) for 10 min at 37°C with agitation. After incubation, gut segments were shaken three times in fresh prewarmed RPMI 1640 (serum-free) with 2 mM EDTA and 20 mM Hepes. The remaining tissue was minced with fine scissors and digested at 37°C for 20 min with continuous stirring at 450 rpm in serum-free RPMI 1640 containing 20 mM Hepes, 0.15 mg/ml liberase TL (Sigma-Aldrich), and 0.5 mg/ml DNase I (Sigma-Aldrich). Digested tissue was passed sequentially through a 70-µm filter and 40-µm cell strainer, and after pelleting, it was resuspended in media supplemented with 10% FCS until staining. CD206+ and CD206- gut macrophages (gated as CD45+CD11b+CD11clow/intSiglecF-Ly6G-) were FACS-sorted on an Influx (BD biosciences) and isolated cells were suspended in PBS supplemented with 2% FCS (Sigma-Aldrich) and 2 mM EDTA (VWR). Sorted cells were collected in PBS with 10% FCS and stored on ice prior to washing and resuspending in Trizol (Thermo Fisher) before storage at −80°C for subsequent RNA extraction. Cells used for FACS-sorting were from a pool of two mice. Cell numbers after FACS sorting: Mouse 1+2 = 150,000 +ve, 150,000 -ve, Mouse 3+4 = 92,000 +ve, 116,000 -ve, Mouse 5+6 = 168,000 +ve, 132,000 -ve. All experimental procedures were approved by the University of Manchester Animal Welfare and Ethical Review Board and performed within the guidelines of the Animals (Scientific Procedures) Act, 1986. Male C57BL/6 mice were purchased from Envigo at age 6-8 weeks. Mice were maintained at a temperature of 20-22°C in a 12h light, 12h dark lighting schedule, in sterile, individually ventilated cages with food and water ad lib. RNA was extracted from sorted cells using an RNeasy mini kit (QIAGEN, UK) following the manufacturer’s instructions. Truseq stranded mRNA Assay. Paired end.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

text: 1 and 2

characteristic: individual

text: Trichuris muris

characteristic: infect

text: Mus musculus

text: Mus musculus

text: mixed caecum and colon

characteristic: organism part

text: CD206 negative

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 1


E-MTAB-10501:Sample 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10501:Sample 2

characteristic: Submitter Id

text: 11 to 13

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: 3 and 4

text: Trichuris muris

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed caecum and colon

text: CD206 negative

text: Mus musculus

text: male

text: Sample 2


E-MTAB-10501:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10501:Sample 3

text: 11 to 13

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: 5 and 6

text: Trichuris muris

text: Mus musculus

text: Mus musculus

text: mixed caecum and colon

text: CD206 negative

text: Mus musculus

text: male

text: Sample 3

characteristic: title


E-MTAB-10501:Sample 4

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10501:Sample 4

text: 11 to 13

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

characteristic: genotype

text: 1 and 2

characteristic: individual

text: Trichuris muris

characteristic: infect

text: Mus musculus

text: Mus musculus

text: mixed caecum and colon

characteristic: organism part

text: CD206 positive

characteristic: phenotype

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

text: Sample 4


E-MTAB-10501:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF MANCHESTER

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10501:Sample 5

characteristic: Submitter Id

text: 11 to 13

text: ArrayExpress

text: house mouse

text: adult

text: wild type genotype

text: 3 and 4

text: Trichuris muris

text: Mus musculus

characteristic: organism

text: Mus musculus

text: mixed caecum and colon

text: CD206 positive

text: Mus musculus

text: male

text: Sample 5


E-MTAB-10501:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF MANCHESTER

text: public

text: E-MTAB-10501:Sample 6

text: 11 to 13

characteristic: age

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: house mouse

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

text: 5 and 6

text: Trichuris muris

text: Mus musculus

text: Mus musculus

text: mixed caecum and colon

text: CD206 positive

text: Mus musculus

text: male

text: Sample 6

characteristic: title


E-MTAB-10246:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10246:Sample 1

tag: Namespace:Czech Academy of Sciences, Institute of Microbiology

text: ArrayExpress

text: ADPRC+

characteristic: cohort

text: Protocols: M. smegmatis strain MG1255 was grown as previously described (Hnilicová et al., 2014). Briefly, cells were taken from glycerol stocks and cultured on 7H10 agar medium plates at 37°C for 2 days. After that, 20 ml of 7H9 medium supplemented with 0.2% glycerol and 0.05% Tween 80 was inoculated as an aerobic overnight preculture at 37°C. The preculture was used to inoculate 1L of the same medium to OD600≈0,01. The culture was grown until OD600≈0,5 for exponential phase, or 24h for stationary phase. Cells were harvested by centrifugation at 8.000 rpm, 10 minutes, 4 °C, and immediately frozen at -80°C. ADPRC+ (biotinylation of NAD-RNA for its capture and sequencing) For M. smegmatis, the pellet of 0.5 L of culture was suspended in 2.4 ml of TE 1X with 0.6 ml of LETS buffer, followed by the addition of 3 ml of acid phenol. Sonicate three times for 1 minute with 1 minute rest, all in ice, with the sonicator set at 1 cycle and 50% amplitude. Sequentially extract the aqueous phase with equal volumes of 1:1 acid phenol:chloroform, and chloroform, add 0.1 volumes of NaAc 3M and 1 volume of isopropanol, and incubate at -20°C overnight. Centrifuge 30 minutes at 9000 rpm and 4°C, wash pellet with 70% ethanol and air dry for 5 minutes. Resuspend in ultrapure water (Braun) and treat with Turbo DNase (Invitrogen) according to vendors instructions. To identify the NAD-transcriptome in M. smegmatis, we performed NADcaptureSeq (Winz et al., 2017) on RNA samples from M. smegmatis at exponential and stationary phase, using biological triplicates. The samples were subjected to the protocol described in Winz et al., 2017, where each replicate was divided in 2 aliquots, one treated with ADPRC for substitution of NAD+ by biotin, the other mock treated. 20 μg of RNA were used in each aliquot. The resulting cDNA was barcoded and amplified by PCR, the products were purified with the AMPure XP kit (1X beads/PCR mix ratio).

text: cell suspension culture

characteristic: growth condition

text: exponential phase

characteristic: growth stage

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

characteristic: strain

text: Sample 1


E-MTAB-10246:Sample 2

text: Czech Academy of Sciences, Institute of Microbiology

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10246:Sample 2

characteristic: Submitter Id

text: ArrayExpress

text: ADPRC-

text: Protocols: M. smegmatis strain MG1255 was grown as previously described (Hnilicová et al., 2014). Briefly, cells were taken from glycerol stocks and cultured on 7H10 agar medium plates at 37°C for 2 days. After that, 20 ml of 7H9 medium supplemented with 0.2% glycerol and 0.05% Tween 80 was inoculated as an aerobic overnight preculture at 37°C. The preculture was used to inoculate 1L of the same medium to OD600≈0,01. The culture was grown until OD600≈0,5 for exponential phase, or 24h for stationary phase. Cells were harvested by centrifugation at 8.000 rpm, 10 minutes, 4 °C, and immediately frozen at -80°C. ADPRC - (no biotinylation, no capture of NAD-RNA, negative control used for comparison) For M. smegmatis, the pellet of 0.5 L of culture was suspended in 2.4 ml of TE 1X with 0.6 ml of LETS buffer, followed by the addition of 3 ml of acid phenol. Sonicate three times for 1 minute with 1 minute rest, all in ice, with the sonicator set at 1 cycle and 50% amplitude. Sequentially extract the aqueous phase with equal volumes of 1:1 acid phenol:chloroform, and chloroform, add 0.1 volumes of NaAc 3M and 1 volume of isopropanol, and incubate at -20°C overnight. Centrifuge 30 minutes at 9000 rpm and 4°C, wash pellet with 70% ethanol and air dry for 5 minutes. Resuspend in ultrapure water (Braun) and treat with Turbo DNase (Invitrogen) according to vendors instructions. To identify the NAD-transcriptome in M. smegmatis, we performed NADcaptureSeq (Winz et al., 2017) on RNA samples from M. smegmatis at exponential and stationary phase, using biological triplicates. The samples were subjected to the protocol described in Winz et al., 2017, where each replicate was divided in 2 aliquots, one treated with ADPRC for substitution of NAD+ by biotin, the other mock treated. 20 μg of RNA were used in each aliquot. The resulting cDNA was barcoded and amplified by PCR, the products were purified with the AMPure XP kit (1X beads/PCR mix ratio).

text: cell suspension culture

text: exponential phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 2


E-MTAB-10246:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10246:Sample 3

text: ArrayExpress

characteristic: broker name

text: ADPRC+

text: cell suspension culture

text: exponential phase

text: Mycolicibacterium smegmatis

characteristic: organism

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 3


E-MTAB-10246:Sample 4

text: public

text: E-MTAB-10246:Sample 4

text: ArrayExpress

text: ADPRC-

characteristic: description

text: cell suspension culture

text: exponential phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 4

characteristic: title


E-MTAB-10246:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10246:Sample 5

text: ArrayExpress

text: ADPRC+

text: cell suspension culture

text: exponential phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 5


E-MTAB-10246:Sample 6

text: public

text: E-MTAB-10246:Sample 6

text: ArrayExpress

text: ADPRC-

characteristic: cohort

text: cell suspension culture

characteristic: growth condition

text: exponential phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 6


E-MTAB-10246:Sample 7

text: public

text: E-MTAB-10246:Sample 7

text: ArrayExpress

text: ADPRC+

text: cell suspension culture

text: stationary phase

characteristic: growth stage

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

characteristic: strain

text: Sample 7


E-MTAB-10246:Sample 8

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: E-MTAB-10246:Sample 8

text: ArrayExpress

text: ADPRC-

text: cell suspension culture

text: stationary phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 8


E-MTAB-10246:Sample 9

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10246:Sample 9

text: ArrayExpress

text: ADPRC+

text: cell suspension culture

text: stationary phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 9


E-MTAB-10246:Sample 11

text: public

characteristic: SRA accession

text: E-MTAB-10246:Sample 11

characteristic: Submitter Id

text: ArrayExpress

text: ADPRC+

text: cell suspension culture

text: stationary phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 11


E-MTAB-10246:Sample 10

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: E-MTAB-10246:Sample 10

text: ArrayExpress

text: ADPRC-

text: cell suspension culture

text: stationary phase

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 10


E-MTAB-10246:Sample 12

text: public

text: E-MTAB-10246:Sample 12

text: ArrayExpress

characteristic: broker name

text: ADPRC-

text: cell suspension culture

text: stationary phase

text: Mycolicibacterium smegmatis

characteristic: organism

text: Mycolicibacterium smegmatis

text: Mycolicibacterium smegmatis

text: Sample 12