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text: adult

text: cervical adenocarcinoma

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text: Protocols: HeLa or ARPE-19 cells grown in 10 or 15 cm dishes, respectively, were fixed with 0.5 mg/ml dithiobis(succinimidyl propionate) (DSP; Thermo Fisher Scientific, cat# 22585) in 1×PBS for 30 min at room temperature. Cells were then washed three times with 1×PBS and 20 mM Tris-HCl, pH 8.0, 5 min each wash, permeabilized with 70% ethanol at room temperature for 1 hour, equilibrated in 2×SSC and 10% formamide (Thermo Fisher Scientific) for 5 min, and hybridized with digoxigenin-labeled oligo probes in 2×SSC, 10% formamide and 10% dextran sulfate (Sigma Aldrich, cat# D8906) overnight at 37°C. To achieve comparable labeling intensities, we adjusted probe concentration according to the RNA \bait\ expression level: 45S-specific probe set, 5 nM; NEAT1-specific probe set, 25 nM; probe targeting (UC)n repeats of PNCTR, 50 nM. Following the hybridization, samples were washed with 2×SSC and 10% formamide at 37°C for 30 min and 1×SSC at room temperature for 15 min and blocked with 0.8% BSA in 4×SSC (HyPro blocking buffer) and 100 units/ml murine RNase inhibitor (New England Biolabs, cat# M0314) at room temperature for 30 min. We then incubated the samples with 2.7 μg/ml HyPro enzyme in HyPro blocking buffer at room temperature for 1 hour. Unbound HyPro was washed off with 4×SSC, 4×SSC and 0.1% Triton-X 100, 4×SSC for 10 min each, and left in 1×PBS for 5 min. In HyPro infusion controls, the cells were bathed in 1×PBS containing 5.4 μg/ml of HyPro enzyme for 5 min. Proximity biotinylation was then carried out by the addition of an equal volume of 1×PBS containing 1 mM biotin-phenol (Caltag Medsystems, cat# CDX-B0270) and 0.2 mM hydrogen peroxide (Sigma Aldrich, cat# H1009) and gently agitating the plates for 1 min. The reaction was quenched by quickly rinsing the plates three times with 5 mM TROLOX (Sigma Aldrich, cat# 238813) and 10 mM sodium ascorbate (Sigma Aldrich, cat# A4034) in 1×PBS. To extract RNA from HyPro-labeled samples, cells were lysed in high-SDS RIPA buffer (150 mM NaCl, 1 mM EDTA, 50 mM Tris-HCl, pH 8.0, 1% NP-40, 0.5% sodium deoxycholate and 0.5% SDS) supplemented with 10 mM sodium ascorbate, 5 mM Trolox, 50 mM DTT and 100 units/ml of murine RNase inhibitor. Cells were incubated in 1 ml/10-cm or 2 ml/15-cm dish of this buffer on ice for 10 min, scraped off the plates and further incubated on ice for 10 min. The samples were then sonicated using a Bioruptor system (Diagenode) equipped with a refrigerated ice bath, for 5-10 cycles of 30 sec ON / 30 sec OFF at the HIGH power setting. The lysates were then incubated at 37°C for 30 min to reverse crosslinks, supplemented with 400 μg of proteinase K (Thermo Fisher) and incubated at 50°C for 1 hour. Three volumes of Trizol LS (Thermo Fisher) was then added to the lysate, the phases were separated by chloroform, and total RNA was extracted from the aqueous phase using Purelink RNA miniprep kit (Thermo Fisher), as recommended. Small aliquots were set aside at this point for RT-PCR quality control and total RNA sequencing (the latter was done for HeLa HyPro infusion controls only; samples HeLa_CTRL_INPUT_...). The rest of RNAs was processed further to isolate biotinylated species. To capture biotinylated RNAs, we used 10 μl of MyOne streptavidin C1 magnetic beads (Thermo Fisher Scientific, cat# 11205D) per 20 μg of total RNA. The beads were washed three times with the B&W buffer (5 mM Tris-HCl, pH 7.5, 5 mM EDTA, pH 8.0, 1 M NaCl, 0.1% Tween-20), once in solution A (100 mM NaOH and 50 mM NaCl), once in solution A with 0.1% Tween-20, once in 100 mM NaCl, and once in 100 mM NaCl, 10 mM Tris-HCl, pH 7.5, 1 mM EDTA, pH 8.0, 0.2% Tween-20. The beads were then resuspended in 150 µl of 100 mM NaCl, 10 mM Tris-HCl, pH 7.5, 1 mM EDTA, pH 8.0, 0.2% Tween-20 and incubated with an equal volume of RNA eluted in nuclease free-water (Thermo Fisher Scientific, cat# AM9939) for 2 hours at 4°C with continuous rotation. The beads were collected using a DynaMag™-2 Magnet (Thermo Fisher), washed three times with B&W buffer and resuspended in 100 µl of 100 mM NaCl, 50 mM Tris-HCl, pH 7.5, 1 mM EDTA, 1% SDS and 0.80 µg/µl proteinase K. The beads were then incubated at 50°C for 45 min in a thermomixer and mixed with 300 µl of Trizol LS and 80 µl of chloroform. Biotinylated RNAs were then purified from the aqueous phase using an RNA Clean & Concentrator kit (Zymo Research). RNA samples were depleted of mature ribosomal RNAs using a NEBNext® rRNA Depletion Kit (New England Biolabs,cat# E6350), and used to prepare stranded sequencing libraries with a NEBNext Ultra II Directional RNA library Prep kit for Illumina and barcoded primers (New England Biolabs, cat# E7765), as recommended. The barcoded libraries were quantified using NGSBIO Library Quant Kit Blue for Illumina® (PCR Biosystems, cat# PB71.15-01) and pooled prior to sequencing.

text: adult

text: cervical adenocarcinoma

characteristic: disease

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: uterine cervix

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text: A.thaliana Col-0 no Cu IP


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:092-16

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

text: good

characteristic: sample health state

text: Arabidopsis thaliana

text: A.thaliana no Cu INPUT


text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:092-17

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana Col-0 no Cu IP

characteristic: title


text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:092-18

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Hoagland

characteristic: culture rooting medium

characteristic: estimated size

text: Ruhr-University Bochum

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

text: Hoagland

text: seedling

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana no Cu INPUT


characteristic: ENA-CHECKLIST

text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:092-19

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

characteristic: growth facility

text: Arabidopsis thaliana

text: vegetative

characteristic: plant developmental stage

text: Hoagland

characteristic: plant growth medium

text: seedling

characteristic: plant structure

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana Col-0 no Cu IP


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-20

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

characteristic: sample disease status

text: good

text: Arabidopsis thaliana

text: A.thaliana no Cu INPUT


text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-21

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

text: good

characteristic: sample health state

text: Arabidopsis thaliana

text: A.thaliana Col-0 no Cu IP


text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-22

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Hoagland

characteristic: culture rooting medium

characteristic: estimated size

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana no Cu INPUT

characteristic: title


characteristic: ENA-CHECKLIST

text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-23

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

characteristic: growth facility

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: Hoagland

characteristic: plant growth medium

text: seedling

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana control Cu IP


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-24

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

characteristic: plant structure

text: no

text: good

text: Arabidopsis thaliana

text: A. thaliana control Cu INPUT


text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-25

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

characteristic: sample disease status

text: good

text: Arabidopsis thaliana

text: A.thaliana control Cu IP


text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-26

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Hoagland

characteristic: culture rooting medium

characteristic: estimated size

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

text: good

characteristic: sample health state

text: Arabidopsis thaliana

text: A. thaliana control Cu INPUT


characteristic: ENA-CHECKLIST

text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-27

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

characteristic: growth facility

text: Arabidopsis thaliana

characteristic: organism

text: vegetative

characteristic: plant developmental stage

text: Hoagland

text: seedling

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana control Cu IP

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC center name

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:093-28

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

characteristic: plant growth medium

text: seedling

text: no

text: good

text: Arabidopsis thaliana

text: A. thaliana control Cu INPUT


text: RUHR-UNIVERSITY BOCHUM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:094-29

text: thale cress

text: Hoagland

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

characteristic: plant structure

text: no

text: good

text: Arabidopsis thaliana

text: A.thaliana control Cu IP


text: RUHR-UNIVERSITY BOCHUM

text: public

text: ena-SAMPLE-TAB-23-08-2021-14:58:18:094-30

characteristic: Submitter Id

text: thale cress

characteristic: common name

text: Hoagland

characteristic: culture rooting medium

characteristic: estimated size

text: Ruhr-University Bochum

text: Arabidopsis thaliana

text: vegetative

text: Hoagland

text: seedling

text: no

characteristic: sample disease status

text: good

text: Arabidopsis thaliana

text: A. thaliana control Cu INPUT


name: SAMI00000021-7 days old N22 rice seedlings

characteristic: ENA-CHECKLIST

text: University of Delhi South Campus

text: public

tag: Namespace:University of Delhi South Campus

text: IBDC

characteristic: broker name

text: rice

characteristic: description

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: 7 days old N22 rice seedlings


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Delhi South Campus

text: public

text: SAMI00000021-7 days old N22 rice seedlings

text: IBDC

text: rice

text: Oryza sativa

text: Oryza sativa

text: 7 days old N22 rice seedlings

characteristic: title


name: SAMI00000020-7 days old N22 rice treated seedlings

text: University of Delhi South Campus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: IBDC

text: rice

text: Oryza sativa

text: Oryza sativa

text: 7 days old N22 rice treated seedlings


text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Guangzhou Huayin Health Medical Group Co., Ltd

text: ArrayExpress

text: human

text: Protocols: From 2019 to 2020, samples were taken from paraffin slicing tissue from 30 patients with triple negative breast cancer who underwent root surgery for breast cancer， and 30 cases were taken from cancerous tissues and the 30 para-cancerous tissues were taken accordingly. Total RNA was isolated and purified using TRIzol(Life, cat.265709, CA, USA) following the manufacturer's procedure. After the quality inspection of Agilent 2100 Bioanalyzer (Agilent, cat.G2939AA, CA, USA) and NanoPhotometer (Implen, cat.N60, Munich, Germany), mRNA with poly(A) is purified from 1μg total RNA using VAHTS mRNA Capture Beads with Oligo (dT) (Vazyme, cat.N401-01, Nanjing, China) through two rounds of purification. Subsequently, mRNA fragment was interrupted using VAHTS Universal V6 RNA-seq Library Prep Kit (Vazyme, cat.NR604, Nanjing, China) under 94℃ 8min and reversed transcription into cDNA which would use to synthesise U-labeled second-stranded DNAs. An A-base was added to the blunt ends of each strand to ligase the indexed adapters which contains a T-base at the tail end. After UDG enzyme treatment of the U-labeled double-strand DNA, size selection was performed with VAHTS DNA Clean Beads (Vazyme, cat.N411, Nanjing, China). Then the ligated products are amplified with PCR by the following conditions: initial denaturation at 98℃ for 5 min; 12-17 cycles of denaturation at 98℃ for 10 sec, annealing at 60℃ for 30 sec, and extension at 72℃ for 30 sec; final extension at 72℃ for 5 min. The average insert size of cDNA library was 280±80 bp. After purification by VAHTS DNA Clean Beads (Vazyme, cat.N411-02, Nanjing, China), quality control of concentration and fragment size is performed by Agilent 2100 Bioanalyzer (Agilent, cat.G2939AA, CA, USA) and Qubit assay tubes (Life, cat. 1604220, CA, USA).

text: adult

characteristic: developmental stage

text: breast neoplasm

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: breast

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex


characteristic: ENA-CHECKLIST

text: Guangzhou Huayin Health Medical Group Co., Ltd

text: public

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: breast neoplasm

text: Homo sapiens

text: Homo sapiens

text: breast

text: Homo sapiens

text: female


text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: adult

text: Normal Breast-Like Subtype of Breast Carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: breast

text: Homo sapiens

text: female


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

tag: Namespace:Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany

text: ArrayExpress

text: Protocols: Staphylococcus aureus COL and the gbaA deletion mutant cultivation under nonstress condition was performed in RPMI1640 medium (Lonza) under vigorous agitation at 37°C in triplicate until cells have reached an optical density at 500 nm of 0.5. S. aureus cells were harvested by centrifugation and fixed in liquid nitrogen. Strain cultivation was performed in RPMI1640 medium (Lonza) under vigorous agitation at 37°C in triplicate until cells have reached an optical density at 500 nm of 0.5. S. aureus cells were harvested by centrifugation. S. aureus cells were harvested and disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 Ribolyzer. RNA isolation was performed using the phenol-chloroform-isoamylalcohol approach. After precipitation with 3 M sodium acetate and isopropanol, the total RNA was washed with cold ethanol and the pellet was solved in sterile water. Initially RNA quality was checked by Trinean Xpose (Gentbrugge,Belgium) and Agilent RNA Nano 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Samples contaminated with DNA were treated with DNase (Qiagen), cleaned as described above and rechecked by Xpose and Agilent Bioanalyzer. RNA was free of DNA with an RNA Integrity Number (RIN) > 9 and rRNA Ratio [23s / 16s] > 1.5. Ribo-Zero rRNA Removal Kit (Bacteria) from Illumina (San Diego, CA, USA) was used to remove the ribosomal RNA molecules from the isolated total RNA. Removal of rRNA was checked by Agilent RNA Pico 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). RNA was free of detectable rRNA. TruSeq Stranded mRNA Library Prep Kit from Illumina (San Diego, CA, USA) was used to prepare cDNA libraries.

text: gbaA deletion

characteristic: genotype

text: RPMI1640 medium

characteristic: growth condition

text: Staphylococcus aureus subsp. aureus COL

text: Staphylococcus aureus subsp. aureus COL

text: whole organism

text: Staphylococcus aureus subsp. aureus COL

characteristic: strain


text: Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: gbaA deletion

text: RPMI1640 medium

text: Staphylococcus aureus subsp. aureus COL

text: Staphylococcus aureus subsp. aureus COL

text: whole organism

text: Staphylococcus aureus subsp. aureus COL

characteristic: title


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

text: wild type genotype

text: RPMI1640 medium

text: Staphylococcus aureus subsp. aureus COL

text: Staphylococcus aureus subsp. aureus COL

text: whole organism

characteristic: organism part

text: Staphylococcus aureus subsp. aureus COL


text: public

text: E-MTAB-10889:5_prime_Staph_aureus_Allicin

text: ArrayExpress

characteristic: broker name

text: Protocols: Cultivation was performed in Luria Bertani (LB) medium in triplicate at 37°C until cells have reached an optical density at 540 nm of 2.0. Cells were harvested by centrifugation, washed and adapted to Belitsky minimal medium (BMM) for one hour. S. aureus cells of 3 replicate experiments were harvested by fast centrifugation and shock frozen in liquid nitrogen 30 min after exposure to 300 µM allicin and disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 Ribolyzer. Cultivation was performed in Luria Bertani (LB) medium in triplicate at 37°C until cells have reached an optical density at 540 nm of 2.0. Cells were harvested by centrifugation, washed with Belitsky minimal medium (BMM) and adapted to BMM for one hour. 30 min exposure to 300 µM allicin Cells were disrupted in 3 mM EDTA/ 200 mM NaCl lysis buffer with a Precellys24 Ribolyzer. RNA isolation was performed using the phenol-chloroform-isoamylalcohol approach. . After precipitation with 3 M sodium acetate and isopropanol, the total RNA was washed with cold ethanol and the pellet was solved in sterile water. Initially RNA quality was checked by Trinean Xpose (Gentbrugge,Belgium) and Agilent RNA Nano 6000 kit on Agilent 2100 Bioanalyzer (Agilent Technologies, Böblingen, Germany). Samples contaminated with DNA were treated with DNase (Qiagen), cleaned as described above and rechecked by Xpose and Agilent Bioanalyzer. cDNA library enriched for primary 5′-transcripts according to Peifer-Sancar et al. (2013): I) Depletion of stable RNAs using the Ribo-Zero rRNA removal kit II) RNA fragmentation by metal hydrolysis III) Digestion of non native 5'-Mono/Di-phosphate ends by Terminator 5′-phosphate-dependent exonuclease IV)Conversion of 5′-triphosphates of primary transcript ends to monophosphates to enable adapter ligation V)Full RNA adapter ligation VI)cDNA synthesis by the usage of a loop adapter which hybridizes via a 3′-NNNNNNN-tail to the 3′-end of the RNA fragment VI)Amplification and Indexing by Adapter-specific primer

characteristic: description

text: wild type genotype

text: LB medium

text: Staphylococcus aureus

text: Staphylococcus aureus

text: whole organism

text: Staphylococcus aureus


text: Klebsiella pneumoniae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: Klebsiella pneumoniae

characteristic: common name

text: Klebsiella pneumoniae

characteristic: organism

text: Klebsiella pneumoniae

characteristic: subject id


text: Escherichia coli

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: Escherichia coli

text: Escherichia coli

text: Escherichia coli


text: Klebsiella oxytoca

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Klebsiella oxytoca

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Staphylococcus aureus

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Staphylococcus aureus

text: Staphylococcus aureus

text: Staphylococcus aureus


text: Enterococcus faecalis

text: SC

text: public

characteristic: SRA accession

text: Enterococcus faecalis

text: Enterococcus faecalis

text: Enterococcus faecalis

characteristic: title


text: Enterobacter aerogenes

characteristic: ENA-CHECKLIST

text: SC

text: public

characteristic: Submitter Id

text: Enterobacter aerogenes

text: Klebsiella aerogenes

text: Klebsiella aerogenes


text: Staphylococcus haemolyticus

text: SC

text: public

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus

text: Staphylococcus haemolyticus


text: Acinetobacter baumannii

text: SC

text: public

text: Acinetobacter baumannii

text: Acinetobacter baumannii

text: Acinetobacter baumannii


text: Acinetobacter lwoffii

text: SC

text: public

text: Acinetobacter lwoffii

text: Acinetobacter lwoffii

text: Acinetobacter lwoffii


text: Pseudomonas aeruginosa

text: SC

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


text: Salmonella enterica

text: SC

text: public

text: Salmonella enterica

text: Salmonella enterica subsp. enterica serovar Typhi


text: Salmonella Typhi

text: SC

text: public

text: Salmonella Typhi

text: Salmonella enterica subsp. enterica serovar Typhimurium


text: Citrobacter freundii

text: SC

text: public

text: Citrobacter freundii

text: Citrobacter freundii

text: Citrobacter freundii


text: Citrobacter youngae

text: SC

text: public

text: Citrobacter youngae

text: Citrobacter youngae

text: Citrobacter youngae


text: Citrobacter koseri

text: SC

text: public

text: Citrobacter koseri

text: Citrobacter koseri

text: Citrobacter koseri


text: public

tag: Namespace:Public Health Authority of the Slovak Republic

text: Science Park of Comenius University of Bratislava

characteristic: broker name

text: Public Health Authority of the Slovak Republic, Trnavská cesta 52, 826 45 Bratislava, Slovakia

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Slovakia

characteristic: geographic location (country and/or sea)

unit: year

characteristic: host age

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

characteristic: host subject id

text: RNA

characteristic: isolate

text: Nasopharyngeal swab

characteristic: isolation source-host associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status


SAMI00000027-N22 Inflorescence control

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Delhi South Campus

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SAMI00000027-N22 Inflorescence control

text: IBDC

text: rice

characteristic: common name

text: Inflorescence of N22 under well-watered conditions

characteristic: description

text: Oryza sativa

characteristic: organism

text: Oryza sativa

text: N22 Inflorescence control

characteristic: title


SAMI00000026-N22 rice flag leaf

characteristic: ENA-CHECKLIST

text: University of Delhi South Campus

text: public

text: SAMI00000026-N22 rice flag leaf

characteristic: Submitter Id

text: IBDC

characteristic: broker name

text: rice

text: Flag leaf at heading N22

text: Oryza sativa

text: Oryza sativa

text: N22 rice flag leaf


SAMI00000030-N22 Inflorescence drought

text: University of Delhi South Campus

text: public

text: SAMI00000030-N22 Inflorescence drought

text: IBDC

text: rice

text: Inflorescence of N22 at heading stage under drought conditions

text: Oryza sativa

text: Oryza sativa

text: N22 Inflorescence drought


SAMI00000029-N22 Flag leaf drought

text: University of Delhi South Campus

text: public

text: SAMI00000029-N22 Flag leaf drought

text: IBDC

text: rice

text: Flag leaf of N22 at heading stage under drought conditions

text: Oryza sativa

text: Oryza sativa

text: N22 Flag leaf drought


SAMI00000031-N22 root drought

text: University of Delhi South Campus

text: public

text: SAMI00000031-N22 root drought

text: IBDC

text: rice

text: root of N22 at milky grain stage under drought conditions

text: Oryza sativa

text: Oryza sativa

text: N22 root drought


SAMI00000028-N22 Root control

text: University of Delhi South Campus

text: public

text: SAMI00000028-N22 Root control

text: IBDC

text: rice

text: Mature root if N22 at milky grain stage

text: Oryza sativa

text: Oryza sativa

text: N22 Root control


SAMI00000032-IR64 Flag Leaf control

text: University of Delhi South Campus

text: public

text: SAMI00000032-IR64 Flag Leaf control

text: IBDC

text: rice

text: Flag Leaf of IR64 under well watered conditions

text: Oryza sativa

text: Oryza sativa

text: IR64 Flag Leaf control


SAMI00000035-IR64 Flag leaf drought

text: University of Delhi South Campus

text: public

text: SAMI00000035-IR64 Flag leaf drought

text: IBDC

text: rice

text: Flag leaf of IR64 at heading stage under drought conditions

text: Oryza sativa

text: Oryza sativa

text: IR64 Flag leaf drought


SAMI00000037-IR64 root drought

text: University of Delhi South Campus

text: public

text: SAMI00000037-IR64 root drought

text: IBDC

text: rice

text: Root of IR64 at milky grain stage under drought conditions

text: Oryza sativa

text: Oryza sativa

text: IR64 root drought


SAMI00000033-IR64 Inflorescence control

text: University of Delhi South Campus

text: public

text: SAMI00000033-IR64 Inflorescence control

text: IBDC

text: rice

text: Inflorescence of IR64 under well watered conditions

text: Oryza sativa

text: Oryza sativa

text: IR64 Inflorescence control


SAMI00000034-IR64 Root control

text: University of Delhi South Campus

text: public

text: SAMI00000034-IR64 Root control

text: IBDC

text: rice

text: Root of IR64 at milky grain stage under well watered condition

text: Oryza sativa

text: Oryza sativa

text: IR64 Root control


SAMI00000036-IR64 Inflorescence drought

text: University of Delhi South Campus

text: public

text: SAMI00000036-IR64 Inflorescence drought

text: IBDC

text: rice

text: Inflorescence of IR64 at heading stage under drought condition

text: Oryza sativa

text: Oryza sativa

text: IR64 Inflorescence drought


text: University of Bergen, Bergen Norway

text: public

tag: Namespace:University of Bergen, Bergen Norway

text: ArrayExpress

text: Protocols: Copepods were collected during sampling cruise in the northern Barents Sea in August 2019 and exposure was performed onboard. The copepod species were captured with a Bongo Net (180 μm mesh size), or a WP-3 net (1000 μm mesh size).The copepods were quickly transferred to a bucket with seawater and kept well diluted at 0−4°C until sorting to species. Calanus glacialis copepodite stages CV were hand-picked for exposure. For exposure a sample of 20 individuals was kept in a 0.5 L glass flask filled with 0.4 L filtered seawater and exposure was performed for 72 hours at a temperature of 3.5 ˚C to solvent control (DMSO), 0.1 µM BaP or 0.1 µM Phe in filtered seawater (0.7 µm). For each treatment group, 4-5 replicate flasks (n = 4) were used. After 72 hours, the animals were harvested and snap-frozen in liquid nitrogen for storage at -80 °C until RNA-extraction. Total RNA was isolated from frozen slices using TRI Reagent according to the manufacturer’s protocol (Sigma-Aldrich, St. Louis, MO, USA). RNA concentration and quality were assessed using NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies, Wilmington, DE, USA) and Agilent 2100 bioanalyzer (Agilent Technologies, Santa Clara, CA, USA). Performed by Novogene on Illumina NovaSeq 6000 System

characteristic: developmental stage

text: 20 individuals pooled

characteristic: individual

text: Calanus glacialis

text: Calanus glacialis

text: whole organism

characteristic: organism part

text: Calanus glacialis


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Department of Pharmacology and Pharmacotherapy, Semmelweis University

characteristic: age

text: ArrayExpress

text: human

text: Protocols: Cells seeded onto 6-well plates were harvested either in proliferation stage (one day before full confluence; day -1) or in differentiated stage (H9C2, AC16: day 8-10; hiPSC-CM: day 40) in Qiazol Lysis buffer (79306, Qiagen, Hilden, Germany) for RNA isolation. Human left ventricular tissue samples from free wall were taken at the time of heart explantation (avoiding scarred, fibrotic, or adipose tissue, endocardium, epicardium, or coronary vessels). Rat left ventricular tissue was collected from male Wistar rats (n=3), and mouse left ventricular tissue was collected from C57BL/6 mice (n=3) by excision of the heart after anesthesia with an intraperitoneal injection of 60 mg/kg pentobarbital (#17F015. Produlab Pharma, Raamsdonksweer, The Netherlands,). Samples were rinsed immediately in saline, blotted dry, frozen in liquid nitrogen and kept at −80°C until further processing. Rat cardiomyoblast H9C2 cell line obtained from ECACC (passage 29; CRL-1446) was maintained in growth medium at 37°C in a humidified atmosphere of 5% CO2. Cells were subcultured at 70% confluence in order to maintain morphological characteristics. Human cardiac myocyte AC16 cell line obtained from Merck (Lot: RD1606008; SCC109) was maintained in growth medium at 37°C in a humidified atmosphere of 5% CO2. Cells were subcultured until 70% confluence then divided. Mouse cardiomyocyte HL-1 cell line obtained from Merck (SCC065, Lot: RD1601001) was cultured as previously described. Briefly, cells were seeded on gelatin/fibronectin coated flasks or plates and maintained in HL-1 expansion medium at 37°C in a humidified atmosphere of 5% CO2. The XCL-1, male control pluripotent stem cell line reprogrammed from CD34+ cord blood cells by episomal vectors, were purchased from XCellScience (CAXIP-001-1V, Novato, USA). The hiPSCs were maintained under standard conditions in 5% CO2 incubator at 37°C, on Matrigel (Corning Inc, Corning, NY, USA) coated six well plates in mTeSR medium (Stemcell Technologies, Vancouver, Canada). After H9C2 cells reached full confluence (day 0), growth medium was changed to a medium containing 1% FBS for 24 hours. On day 1, medium was supplemented with 10nM all-trans retinoic acid. Differentiation medium was changed on every two to three days.After AC16 cells reached 80% confluence (day 0), growth medium was changed to differentiation media with 2% FBS supplemented with 1× insulin-transferrin-selenite supplement and with 10nM ATRA.To perform differentiation on hiPSC into cardiomyocyte dense monolayers (75-90% confluent) of hiPSCs were used at passage 26. Differentiation was initiated by medium change to RPMI 1640 medium supplemented with insulin-free B27 containing 10 uM CHIR99021. On day 2 medium was changed to RPMI medium supplemented with insulin-free B27.The next day medium was changed to RPMI medium supplemented with insulin-free B27 containing 2.5 uM C59 Wnt inhibitor. From day 5, the medium was changed every other day with RPMI supplemented with B27 (containing insulin). First beating areas typically arised after 7 days following induction. The metabolic selection was performed by medium change to RPMI without glucose supplemented with B27 for 4 days between days 10-14. Cells and tissue samples were collected and lysed in 1 mL of QIAzol Lysis Reagent (79306, Qiagen, Hilden, Germany). Total RNA was extracted from 350 µl of the lysates using Direct-zol RNA MiniPrep System with on-column DNAse I treatment according to the manufacturer’s (Zymo Research, Irvine, CA, USA) protocol. The RNA Integrity Numbers and RNA concentration were determined by RNA ScreenTape system with 2200 Tapestation (Agilent Technologies, Santa Clara, CA, USA) and RNA HS Assay Kit with Qubit 3.0 Fluorometer (Thermo Fisher Scientific, Waltham, MA, USA), respectively. For Gene Expression Profiling (GEx) library construction, QuantSeq 3‘ mRNA-Seq Library Prep Kit FWD for Illumina (Lexogen GmbH, Wien, Austria) was applied according to the manufacturer’s protocol. The quality and quantity of the library was determined by using High Sensitivity DNA1000 ScreenTape system with 2200 Tapestation (Agilent Technologies, Santa Clara, CA, USA) and dsDNA HS Assay Kit with Qubit 3.0 Fluorometer (Thermo Fisher Scientific, Waltham, MA, USA), respectively.

text: adult

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

text: Homo sapiens

text: female

characteristic: sex


characteristic: External Id

text: Department of Pharmacology and Pharmacotherapy, Semmelweis University

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: adult

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

text: Homo sapiens

text: male


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

text: AC16 cell

characteristic: cell line

text: cardiac muscle cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: adult

text: normal

text: wild type genotype

text: growth medium

characteristic: growth condition

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: heart left ventricle

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: AC16 cell

text: cardiac muscle cell

text: human

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: insulin-transferrin selenium + all trans retinoic acid + fibronectin

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

characteristic: organism part

text: Homo sapiens


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: AC16 cell

text: cardiac muscle cell

text: human

text: adult

text: normal

text: wild type genotype

text: insulin-transferrin selenium + all trans retinoic acid

text: Homo sapiens

text: Homo sapiens

text: heart left ventricle

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: cardiac muscle cell

characteristic: cell type

text: human

characteristic: common name

characteristic: description

text: differentiated

text: normal

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: skin

text: induced pluripotent stem cell

characteristic: progenitor cell type

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

tag: Namespace:Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Bioinformatics and Genomics.

text: ArrayExpress

characteristic: broker name

text: human

text: Protocols: Fluorescent staining of cell surface markers was done with antibodies against Mac1 (APC) and CD19 (APC-Cy7) (BD Pharmigen). Samples were analyzed on the LSRII flow cytometer (BD Biosciences) and data were analyzed with FlowJo software (Tree Star). Human BLaER1 cells and mouse C10 cells were grown in RPMI (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum, 2 mM L-glutamine, and 100 U/ml penicillin G sodium. Transdifferentiation was induced in BlaER1 and C10 cells by addition of 100nM of β-estradiol (Calbiochem) and grown with 10nM of IL-3 and CSF-1 (Peprotech). Cells were lysed with Qiazol following the manufacturer’s instructions (Qiagen). Chloroform was added to each sample and RNA contained in the aqueous fraction was isolated and purified by using RNeasy mini kit columns also following the manufacturer’s instructions (Qiagen). Stranded poly A+ libraries were prepared with 1 ug of total RNA using TruSeq mRNA Sample Prep Kit (Illumina) according to manufacturer’s protocol.

text: precursor B-cell acute lymphoblastic leukemia

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

characteristic: title


characteristic: External Id

text: Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Bioinformatics and Genomics.

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: house mouse

text: lymphoma

text: CEBPA overexpression

text: Mus musculus

text: Mus musculus

text: blood

text: Mus musculus


name: E-MTAB-7114_2:Human_000h CEBPA replicate 1

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: Protocols: To track the transdifferentiation process along the 7 days it lasts, fluorescent staining of cell surface markers was done with antibodies against Mac1 (APC) and CD19 (APC-Cy7) (BD Pharmigen). Samples were analyzed on the LSRII flow cytometer (BD Biosciences) and data were analyzed with FlowJo software (Tree Star). Human BLaER1 cells and mouse C10 cells were grown in RPMI (Invitrogen) supplemented with 10% heat-inactivated fetal bovine serum, 2 mM L-glutamine, and 100 U/ml penicillin G sodium. Transdifferentiation was induced in BlaER1 by addition of 100nM of β-estradiol (Calbiochem) and grown with 10nM of IL-3 and CSF-1 (Peprotech). Cells were crosslinked with 1% formaldehyde for 10 minutes at room temperature and sheared with a Covaris sonicator. 5 μg of chromatin and 5 μg of antibody against rat CEBPA (sc-61 X, Santa Cruz) were incubated in RIPA buffer (140 mM NaCl, 10 mM Tris HCl pH 8.0, 1 mM EDTA, 1 % Triton X-100, 0.1 % SDS, 0.1 % Na deoxycholate, protease inhibitors). DNA libraries were prepared with 1 ng of purified ChIP using NEBNext DNA Library kit for Illumina following the manufacturer’s protocol.

characteristic: description

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_000h CEBPA replicate 1


name: E-MTAB-7114_2:Human_000h CEBPA replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_000h CEBPA replicate 2


name: E-MTAB-7114_2:Human_000h Input replicate 1

characteristic: External Id

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_000h Input replicate 1

characteristic: title


name: E-MTAB-7114_2:Human_000h Input replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_000h Input replicate 2


name: E-MTAB-7114_2:Human_003h CEBPA replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_003h CEBPA replicate 1


name: E-MTAB-7114_2:Human_003h CEBPA replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_003h CEBPA replicate 2


name: E-MTAB-7114_2:Human_003h Input replicate 1

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_003h Input replicate 1


name: E-MTAB-7114_2:Human_003h Input replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

characteristic: description

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_003h Input replicate 2


name: E-MTAB-7114_2:Human_006h CEBPA replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_006h CEBPA replicate 1


name: E-MTAB-7114_2:Human_006h CEBPA replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_006h CEBPA replicate 2

characteristic: title


name: E-MTAB-7114_2:Human_006h Input replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_006h Input replicate 1


name: E-MTAB-7114_2:Human_006h Input replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_006h Input replicate 2


name: E-MTAB-7114_2:Human_009h CEBPA replicate 1

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_009h CEBPA replicate 1


name: E-MTAB-7114_2:Human_009h CEBPA replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

characteristic: common name

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_009h CEBPA replicate 2


name: E-MTAB-7114_2:Human_009h Input replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: description

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_009h Input replicate 1


name: E-MTAB-7114_2:Human_009h Input replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_009h Input replicate 2


name: E-MTAB-7114_2:Human_012h CEBPA replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_012h CEBPA replicate 1

characteristic: title


name: E-MTAB-7114_2:Human_012h CEBPA replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_012h CEBPA replicate 2


name: E-MTAB-7114_2:Human_012h Input replicate 1

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_012h Input replicate 1


name: E-MTAB-7114_2:Human_012h Input replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

characteristic: cell line

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_012h Input replicate 2


name: E-MTAB-7114_2:Human_018h CEBPA replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: human

characteristic: common name

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_018h CEBPA replicate 1


name: E-MTAB-7114_2:Human_018h CEBPA replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: description

characteristic: disease

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_018h CEBPA replicate 2


name: E-MTAB-7114_2:Human_018h Input replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_018h Input replicate 1


name: E-MTAB-7114_2:Human_018h Input replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_018h Input replicate 2

characteristic: title


name: E-MTAB-7114_2:Human_024h CEBPA replicate 1

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_024h CEBPA replicate 1


name: E-MTAB-7114_2:Human_024h CEBPA replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_024h CEBPA replicate 2


name: E-MTAB-7114_2:Human_024h Input replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_024h Input replicate 1


name: E-MTAB-7114_2:Human_024h Input replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: common name

characteristic: description

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_024h Input replicate 2


name: E-MTAB-7114_2:Human_036h CEBPA replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_036h CEBPA replicate 1


name: E-MTAB-7114_2:Human_036h CEBPA replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_036h CEBPA replicate 2


name: E-MTAB-7114_2:Human_036h Input replicate 1

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_036h Input replicate 1

characteristic: title


name: E-MTAB-7114_2:Human_036h Input replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_036h Input replicate 2


name: E-MTAB-7114_2:Human_048h CEBPA replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_048h CEBPA replicate 1


name: E-MTAB-7114_2:Human_048h CEBPA replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: cell line

text: human

characteristic: common name

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_048h CEBPA replicate 2


name: E-MTAB-7114_2:Human_048h Input replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: description

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_048h Input replicate 1


name: E-MTAB-7114_2:Human_048h Input replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_048h Input replicate 2


name: E-MTAB-7114_2:Human_072h CEBPA replicate 1

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_072h CEBPA replicate 1


name: E-MTAB-7114_2:Human_072h CEBPA replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_072h CEBPA replicate 2

characteristic: title


name: E-MTAB-7114_2:Human_072h Input replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_072h Input replicate 1


name: E-MTAB-7114_2:Human_072h Input replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: cell line

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_072h Input replicate 2


name: E-MTAB-7114_2:Human_120h CEBPA replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

characteristic: common name

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_120h CEBPA replicate 1


name: E-MTAB-7114_2:Human_120h CEBPA replicate 2

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

text: human

characteristic: description

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_120h CEBPA replicate 2


name: E-MTAB-7114_2:Human_120h Input replicate 1

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: disease

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_120h Input replicate 1


name: E-MTAB-7114_2:Human_120h Input replicate 2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_120h Input replicate 2


name: E-MTAB-7114_2:Human_168h CEBPA replicate 1

characteristic: External Id

text: public

text: ArrayExpress

characteristic: broker name

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_168h CEBPA replicate 1

characteristic: title


name: E-MTAB-7114_2:Human_168h CEBPA replicate 2

characteristic: INSDC center name

text: public

text: ArrayExpress

characteristic: cell line

text: human

text: CEBPA overexpression

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: Human_168h CEBPA replicate 2


name: E-MTAB-7114_2:Human_168h Input replicate 1

characteristic: ENA-CHECKLIST

characteristic: INSDC first public

text: public

text: ArrayExpress

text: human

text: CEBPA overexpression

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: Human_168h Input replicate 1