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characteristic: ENA-LAST-UPDATE

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text: Dianalabs SA, Rue de la coline 6 - 1205 Genève

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characteristic: geographic location (region and locality)

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text: hCoV-19/Switzerland/GE-DIA-011424331601/2021


characteristic: ENA-CHECKLIST

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characteristic: isolate

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text: Tanguy ARAUD, Geraldine Jost, Katia Jaton, Nadia Liassine

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text: hCoV-19/Switzerland/GE-DIA-011424347501/2021


characteristic: ENA-CHECKLIST

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characteristic: broker name

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text: hCoV-19/Switzerland/GE-DIA-011424360701/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

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text: SIB

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text: hCoV-19/Switzerland/GE-DIA-011424371101/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

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characteristic: broker name

text: Polyanalytic SA, Avenue de Sévelin 18 - 1004 Lausanne

characteristic: collecting institution

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text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

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text: hCoV-19/Switzerland/VD-DIA-021474997401/2021


characteristic: ENA-CHECKLIST

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text: Medisupport

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text: Human

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characteristic: isolate

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characteristic: ENA-LAST-UPDATE

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text: Medisupport

characteristic: INSDC center name

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text: SIB

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text: Human

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text: hCoV-19/Switzerland/VD-DIA-021475018801/2021


characteristic: ENA-CHECKLIST

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text: Medisupport

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characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

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characteristic: geographic location (region and locality)

text: Human

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text: hCoV-19/Switzerland/VD-DIA-021475049901/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

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text: Human

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characteristic: host health state

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characteristic: isolate

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characteristic: ENA-CHECKLIST

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text: Medisupport

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text: public

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text: SIB

text: Switzerland

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text: Human

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021475154301/2021


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Medisupport

text: public

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-DIA-021475188701/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Medisupport

text: public

text: SIB

text: Switzerland

text: VD

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/VD-DIA-021475189601/2021

characteristic: isolate

characteristic: organism

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaSPAdes v3.14.1

characteristic: assembly software

text: MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

text: not provided

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235652 of study SRP329673.

characteristic: description

text: Human saliva metagenome

characteristic: environment (biome)

text: Human oral cavity

characteristic: environment (feature)

text: Saliva

characteristic: environment (material)

text: not provided

text: not provided

unit: DD

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

characteristic: metagenomic source

text: Haemophilus parainfluenzae

text: Saliva samples were analyzed based on the metagenome sequencing technique in this study, aiming at understanding the community structure and functional characteristics of oral microorganisms in caries free children with different caries risks.

characteristic: project name

characteristic: sample derived from

text: Haemophilus parainfluenzae

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR15235652_bin.8_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.14.1

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235661 of study SRP329673.

text: Human saliva metagenome

text: Human oral cavity

text: Saliva

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: human saliva metagenome

text: human saliva metagenome

text: uncultured Rothia sp.

characteristic: organism

text: uncultured Rothia sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR15235661_bin.8_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: SPAdes v3.14.1

text: metaWRAP v1.1

text: EBI-EMG

text: not provided

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235664 of study SRP329673.

characteristic: description

text: Human saliva metagenome

characteristic: environment (biome)

text: Human oral cavity

characteristic: environment (feature)

text: Saliva

characteristic: environment (material)

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

characteristic: metagenomic source

text: uncultured Atopobium sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Atopobium sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR15235664_bin.9_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.14.1

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235649 of study SRP329673.

text: Human saliva metagenome

text: Human oral cavity

text: Saliva

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: human saliva metagenome

text: human saliva metagenome

text: uncultured Rothia sp.

characteristic: organism

text: uncultured Rothia sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR15235649_bin.7_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.14.1

text: metaWRAP v1.1

text: EBI-EMG

text: not provided

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235662 of study SRP329673.

characteristic: description

text: Human saliva metagenome

characteristic: environment (biome)

text: Human oral cavity

characteristic: environment (feature)

text: Saliva

characteristic: environment (material)

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

characteristic: metagenomic source

text: uncultured Leptotrichia sp.

characteristic: project name

characteristic: sample derived from

text: uncultured Leptotrichia sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR15235662_bin.26_metaWRAP_v1.1_MAG


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EMG

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes v3.14.1

characteristic: assembly software

characteristic: binning parameters

text: metaWRAP v1.1

characteristic: binning software

text: EBI-EMG

characteristic: broker name

text: not provided

characteristic: collection date

text: CheckM

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235658 of study SRP329673.

text: Human saliva metagenome

text: Human oral cavity

text: Saliva

text: not provided

characteristic: geographic location (country and/or sea)

text: not provided

text: not provided

text: metagenome-assembled genome

text: human saliva metagenome

text: human saliva metagenome

text: uncultured Prevotellaceae bacterium

characteristic: organism

text: uncultured Prevotellaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR15235658_bin.22_metaWRAP_v1.1_MAG

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: EMG

text: public

text: metaSPAdes v3.14.1

text: metaWRAP v1.1

text: EBI-EMG

text: not provided

characteristic: common name

characteristic: completeness score

text: CheckM

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235660 of study SRP329673.

characteristic: description

text: Human saliva metagenome

characteristic: environment (biome)

text: Human oral cavity

characteristic: environment (feature)

text: Saliva

characteristic: environment (material)

text: not provided

text: not provided

characteristic: geographic location (latitude)

text: not provided

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: human saliva metagenome

text: human saliva metagenome

characteristic: metagenomic source

text: Haemophilus parainfluenzae

characteristic: project name

characteristic: sample derived from

text: Haemophilus parainfluenzae

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR15235660_bin.2_metaWRAP_v1.1_MAG