characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-47-4/2020

text: not collected

text: OH-PACT consortium sample sequencing


status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:OH-PACT consortium

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specific multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 48 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-20-2/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-59-7/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-60-5/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-36-1/2020

text: not collected

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-21-2/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-11-19/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-23-6/2020

text: not collected

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-12-7/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-16-10/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-39-3/2020

text: not collected

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Limburg

text: Mink

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-67-2/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-41-3/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-7-3/2020

text: not collected

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-51-10/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specific multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 48 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-6-17/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-63-4/2020

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-28-3/2020

text: not collected

text: active surveillance in response to outbreak

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-6-13/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-28-6/2020

text: not collected

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-16-1/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

text: Noord-Brabant

text: Mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-36-5/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: GISAID Accession ID

text: OH-PACT consortium

text: public

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: description

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-8-16/2020

text: not collected

characteristic: organism

characteristic: sample capture status

text: OH-PACT consortium sample sequencing

characteristic: title


text: Enterobacter cloacae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Enterobacter cloacae

characteristic: common name

text: Enterobacter cloacae

text: Enterobacter cloacae

characteristic: subject id


characteristic: ENA-CHECKLIST

text: public

tag: Namespace:Department of Pathology, University of Cambridge

text: ArrayExpress

characteristic: broker name

text: extravillous

characteristic: cell type

text: human

text: TSC Okae

characteristic: culture origin

characteristic: culture system

text: Protocols: All tissue samples used for this study were obtained with written informed consent from all participants in accordance with the guidelines in The Declaration of Helsinki 2000. Tissue samples used for our study were obtained from Addenbrooke’s Hospital (6-11 weeks gestation) under ethical approval from the Cambridge Local Research Ethics Committee (04/Q0108/23) which is now incorporated into the overarching ethics permission given to the Centre for Trophoblast Research biobank for the ‘Biology of the Human Uterus in Pregnancy and Disease Tissue Bank’ at the University of Cambridge under ethical approval from the East of England-Cambridge Central Research Ethics Committee (17/EE/0151). A total of seven different patient-derived lines were used in derivation and differentiation of trophoblast organoids. 2D conversion of trophoblast organoids was achieved by plating a single-cell suspension onto a Matrigel-coated (Corning, 0.1mg/ml) 6-well culture plate. Cell monolayers were cultured in TOM (TOM medium is composed of Advanced DMEM/F12, N2 supplement (at manufacturer’s recommended concentration), B27 supplement minus vitamin A (at manufacturer’s recommended concentration), Primocin 100 μg/mL, N-Acetyl-L cysteine 1.25 mM, L-glutamine 2 mM, recombinant human EGF 50 ng/mL, CHIR99021 1.5 μM, recombinant human R-spondin-1 80 ng/mL, recombinant human FGF-2 100 ng/mL, recombinant human HGF 50 ng/mL, A83-01 500 nM, prostaglandin E2 2.5 μM, Y-27632 2 μM.). Five different patient-derived lines were used in TSC culture and differentiation (BTS5, BTS11, CT27, CT29 and CT30). TSC were cultured according to the previously published protocol with the following modifications. The concentration of CHIR99021 was doubled to 4 µM to help prevent spontaneous differentiation to HLA-G+ EVT. For TSC-STB differentiation, the collagen IV concentration for plate-coating was increased to 5 µg/ml. TSC-STB samples were collected at day 6 and TSC-EVT were collected at day 8 for downstream analysis. Conversion of TSC to 3D cultures was achieved by passaging a single-cell suspension and plating into 25 µl drops of Matrigel and overlaying with TOM media. The TSC-3D cells were then cultured in the same manner as the trophoblast organoids. TSC-3D were passaged every 7-10 days. Total RNA was isolated using the miRNeasy isolation kit (Qiagen 217004) with on-column DNase digestion(Qiagen 79254). RNA quality was assessed on the Agilent 2100 bioanalyzer (Thermo Fisher Scientific). RNA integrity number (RIN) of each tested sample was greater or equal to 8. Library prep for bulk mRNA sequencing was done following the manufacturer recommended protocol by using the Truseq stranded mRNA library kit (Illumina).

characteristic: description

text: blastocyst

characteristic: developmental stage

text: EVT

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Department of Pathology, University of Cambridge

characteristic: INSDC center name

text: public

text: ArrayExpress

text: villous

text: human

text: TSC Okae

text: blastocyst

text: TOM

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: villous

text: human

characteristic: common name

text: TSC Okae

text: blastocyst

text: SCT

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: villous

characteristic: cell type

text: human

text: TSC Okae

characteristic: culture origin

characteristic: culture system

text: blastocyst

text: TSC

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: extravillous

text: human

text: TSC Okae

characteristic: description

text: blastocyst

characteristic: developmental stage

text: EVT

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: extravillous

text: human

text: TSC Okae

text: 1st trimester placenta

text: EVT

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: villous

text: human

text: TSC Okae

text: 1st trimester placenta

text: TOM

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: villous

characteristic: cell type

text: human

characteristic: common name

text: TSC Okae

characteristic: culture origin

text: 1st trimester placenta

text: SCT

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: public

text: ArrayExpress

text: villous

text: human

text: TSC Okae

characteristic: culture system

characteristic: description

text: 1st trimester placenta

characteristic: developmental stage

text: TSC

characteristic: growth condition

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: extravillous

text: human

text: Organoids

text: 1st trimester placenta

text: EVT

characteristic: individual

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: Homo sapiens


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: villous

text: human

text: Organoids

text: 1st trimester placenta

text: TOM

text: Homo sapiens

text: Homo sapiens

text: Homo sapiens

characteristic: title


characteristic: ENA-CHECKLIST

text: EURAC Research

text: public

tag: Namespace:EURAC Research

characteristic: Submitter Id

text: human

characteristic: common name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: Basel

characteristic: geographic location (region and locality)

text: Homo sapiens

text: Homo sapiens

text: female

characteristic: sex

text: Premolar

characteristic: tissue type

text: Premolar (34) of the Lady from Barfüsser Church


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: CNRS

text: public

text: African malaria mosquito

text: three-day-old non-blood fed females

text: Anopheles gambiae

text: Anopheles gambiae

text: Thiassale-S line


characteristic: External Id

text: CNRS

characteristic: INSDC center name

text: public

text: African malaria mosquito

text: three-day-old non-blood fed females

text: Anopheles gambiae

text: Anopheles gambiae

text: Fludo-R line


text: CNRS

text: public

text: African malaria mosquito

text: three-day-old non-blood fed females

text: Anopheles gambiae

characteristic: organism

text: Anopheles gambiae

text: Delta-R line


text: CNRS

characteristic: INSDC first public

text: public

text: African malaria mosquito

text: three-day-old non-blood fed females

text: Anopheles gambiae

text: Anopheles gambiae

text: Clothia-R line


text: CNRS

characteristic: INSDC last update

text: public

text: African malaria mosquito

text: three-day-old non-blood fed females

text: Anopheles gambiae

text: Anopheles gambiae

text: Transflu-R line


text: DANONE

text: public

characteristic: INSDC status

text: human

text: Homo sapiens

text: Homo sapiens

text: Gut Stool Microbiome


text: CENTER FOR GENOMIC REGULATION

text: public

characteristic: SRA accession

tag: Namespace:CENTER FOR GENOMIC REGULATION

text: ArrayExpress

characteristic: broker name

text: Protocols: Cells were collected at different time points after transdifferentiation induction: 0, 72 and 144 hours. Cells were sorted by Fluorescence Analysis Cell Sorting (FACS) prior to DNA extraction. Human BLaER1 cells were grown in RPMI medium (Invitrogen) supplemented with 10% heat-inactivated foetal bovine serum (FBS, Gibco), 2 mM L-glutamine, and 100 U/ml penicillin G sodium (Gibco). Cells were maintained at 37ºC in a humid atmosphere containing 5% CO2. Transdifferentiation was induced by addition of 100 nM of beta-estradiol (Calbiochem) and 10 nM of IL-3 and CSF-1 (Peprotech). Genomic DNA was extracted from the FACS sorted cells with the GeneJET Genomic DNA purification kit (Thermo Scientific) following the instructions of the manufacturer. A first PCR step was done by Phusion polymerase (Thermo Fisher) using 500 ng of genomic DNA and staggered oligo mix with the presence of 6% DMSO, annealing temperature of 60ºC and a total of 20 cycles of amplification. We used staggered oligos to avoid the same bases being read for the constant region during Illumina sequencing and to minimize technical issues during base calling. Up to 6 PCR reactions were combined, the amplicons were gel-purified, and 2 ng were used as a template for a second PCR. The second PCR step was also done by Phusion polymerase but without the presence of DMSO. We used Illumina barcoded oligos an annealing temperature of 60ºC and a total of 8 cycles of amplification. Samples were purified with Agencourt Ampure beads (Beckman Coulter), quantified with a Qubit fluorometer (Thermo Scientific) and checked for quality in a Bioanalyzer (Agilent).

characteristic: description

text: synthetic construct

text: synthetic construct

text: synthetic construct


characteristic: ENA-CHECKLIST

text: CENTER FOR GENOMIC REGULATION

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: cell line

text: precursor B cell

characteristic: cell type

text: human

text: chronic lymphocytic leukemia

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: bone marrow

characteristic: organism part

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: derived villous trophoblast

text: human

characteristic: common name

text: TOM

characteristic: culture medium

text: Protocols: All tissue samples used for this study were obtained with written informed consent from all participants in accordance with the guidelines in The Declaration of Helsinki 2000. Tissue samples used for our study were obtained from Addenbrooke’s Hospital (6-11 weeks gestation) under ethical approval from the Cambridge Local Research Ethics Committee (04/Q0108/23) which is now incorporated into the overarching ethics permission given to the Centre for Trophoblast Research biobank for the ‘Biology of the Human Uterus in Pregnancy and Disease Tissue Bank’ at the University of Cambridge under ethical approval from the East of England-Cambridge Central Research Ethics Committee (17/EE/0151). A total of seven different patient-derived lines were used in derivation and differentiation of trophoblast organoids. 2D conversion of trophoblast organoids was achieved by plating a single-cell suspension onto a Matrigel-coated (Corning, 0.1mg/ml) 6-well culture plate. Cell monolayers were cultured in TOM (TOM medium is composed of Advanced DMEM/F12, N2 supplement (at manufacturer’s recommended concentration), B27 supplement minus vitamin A (at manufacturer’s recommended concentration), Primocin 100 μg/mL, N-Acetyl-L cysteine 1.25 mM, L-glutamine 2 mM, recombinant human EGF 50 ng/mL, CHIR99021 1.5 μM, recombinant human R-spondin-1 80 ng/mL, recombinant human FGF-2 100 ng/mL, recombinant human HGF 50 ng/mL, A83-01 500 nM, prostaglandin E2 2.5 μM, Y-27632 2 μM.). Five different patient-derived lines were used in TSC culture and differentiation (BTS5, BTS11, CT27, CT29 and CT30). TSC were cultured according to the previously published protocol with the following modifications. The concentration of CHIR99021 was doubled to 4 µM to help prevent spontaneous differentiation to HLA-G+ EVT. For TSC-STB differentiation, the collagen IV concentration for plate-coating was increased to 5 µg/ml. TSC-STB samples were collected at day 6 and TSC-EVT were collected at day 8 for downstream analysis. Conversion of TSC to 3D cultures was achieved by passaging a single-cell suspension and plating into 25 µl drops of Matrigel and overlaying with TOM media. The TSC-3D cells were then cultured in the same manner as the trophoblast organoids. TSC-3D were passaged every 7-10 days. Total RNA was isolated using the miRNeasy isolation kit (Qiagen 217004) with on-column DNase digestion (Qiagen 79254). Library prep for small RNA sequencing was done by using the Bioo Nextflex protocol (NEXTFLEX Small RNA-seq Kit v3 for Illumina Platforms).

text: 6 to 11

unit: week

characteristic: gestational age

text: TSC Okae 3D culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blastocyst

text: Homo sapiens


characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ArrayExpress

text: derived villous trophoblast

text: human

text: TSC

text: 6 to 11

text: TSC Okae 3D culture

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blastocyst

text: Homo sapiens


characteristic: ENA-CHECKLIST

text: public

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: derived villous trophoblast

characteristic: cell type

text: human

text: TOM

characteristic: description

text: 6 to 11

text: TSC Okae 3D culture

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: ArrayExpress

text: derived villous trophoblast

text: human

characteristic: common name

text: TSC

text: 6 to 11

text: TSC Okae 3D culture

text: Homo sapiens

text: Homo sapiens

text: placenta

characteristic: organism part

text: Homo sapiens

characteristic: title


characteristic: External Id

text: public

text: ArrayExpress

text: derived villous trophoblast

text: human

text: TOM

characteristic: culture medium

text: 6 to 11

characteristic: gestational age

text: organoid culture

characteristic: growth condition

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: placenta

text: Homo sapiens


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Clinical Bioinformatics Area

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND01543, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

text: public

characteristic: Submitter Id

text: not provided

characteristic: common name

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND01546, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

text: AND01576, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

text: public

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND01577, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: MaizeGDB

text: public

characteristic: Submitter Id

text: Corteva

characteristic: biomaterial provider

text: maize

characteristic: common name

characteristic: cultivar

text: Sequencing, Assembly and Annotation of B104

characteristic: description

text: Leaf

characteristic: dev stage

text: Inbred line

characteristic: genotype

text: USA: Johnston, IA

text: USA

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Leaves were collected from B104 plants for DNA extraction and sequencing.

characteristic: isolation and growth condition

text: Zea mays

characteristic: organism

text: wild type

characteristic: phenotype

text: Leaf

characteristic: plant developmental stage

text: soil

characteristic: plant growth medium

text: Leaf

characteristic: plant structure

text: tissue sample

characteristic: sample type

text: Zea mays

text: Monecious

characteristic: sex

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universita' degli Studi di Milano

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Universita' degli Studi di Milano

characteristic: Submitter Id

characteristic: collection date

text: Estonia

characteristic: geographic location (country and/or sea)

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Human Sample

characteristic: isolation source

text: Enterobacter asburiae

text: Enterobacter asburiae


text: Universita' degli Studi di Milano

text: public

text: Spain

text: diseased

text: Homo sapiens

text: Human Sample

text: Enterobacter asburiae

characteristic: organism

text: Enterobacter asburiae

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universita' degli Studi di Milano

text: public

text: Estonia

text: diseased

text: Homo sapiens

text: Human Sample

text: Enterobacter cloacae

text: Enterobacter cloacae


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universita' degli Studi di Milano

text: public

text: Greece

text: diseased

text: Homo sapiens

text: Human Sample

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Universita' degli Studi di Milano

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: United Kingdom

text: diseased

text: Homo sapiens

text: Human Sample

text: Enterobacter cloacae

text: Enterobacter cloacae


text: Universita' degli Studi di Milano

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: United Kingdom

text: diseased

text: Homo sapiens

text: Human Sample

text: Enterobacter kobei

text: Enterobacter kobei


text: Universita' degli Studi di Milano

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Lithuania

text: diseased

text: Homo sapiens

text: Human Sample

text: Escherichia coli

text: Escherichia coli


text: Universita' degli Studi di Milano

text: public

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human Sample

text: Escherichia coli

text: Escherichia coli


text: Universita' degli Studi di Milano

text: public

text: Estonia

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human Sample

text: Escherichia coli

text: Escherichia coli


text: Universita' degli Studi di Milano

text: public

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: isolate

text: Human Sample

characteristic: isolation source

text: Escherichia coli

text: Escherichia coli


text: Universita' degli Studi di Milano

text: public

text: Greece

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella aerogenes

characteristic: organism

text: Klebsiella aerogenes

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universita' degli Studi di Milano

text: public

text: Italy

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella aerogenes

text: Klebsiella aerogenes


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universita' degli Studi di Milano

text: public

text: Estonia

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Universita' degli Studi di Milano

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: United Kingdom

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: Universita' degli Studi di Milano

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Italy

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universita' degli Studi di Milano

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Greece

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universita' degli Studi di Milano

text: public

characteristic: collection date

text: Lithuania

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

text: Human Sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universita' degli Studi di Milano

text: public

text: Estonia

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Human Sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universita' degli Studi di Milano

text: public

text: United Kingdom

text: diseased

text: Homo sapiens

characteristic: isolate

text: Human Sample

characteristic: isolation source

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: Universita' degli Studi di Milano

text: public

text: Estonia

text: diseased

text: Homo sapiens

text: Human Sample

text: Proteus mirabilis

characteristic: organism

text: Proteus mirabilis

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Universita' degli Studi di Milano

text: public

text: United Kingdom

text: diseased

text: Homo sapiens

text: Human Sample

text: Serratia liquefaciens

text: Serratia liquefaciens


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Universita' degli Studi di Milano

text: public

text: Italy

text: diseased

text: Homo sapiens

text: Human Sample

text: Serratia marcescens

text: Serratia marcescens


text: Universita' degli Studi di Milano

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: United Kingdom

text: diseased

text: Homo sapiens

text: Human Sample

text: Serratia marcescens

text: Serratia marcescens


text: ESTACION BIOLOGICA DE DONANA

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:ESTACION BIOLOGICA DE DONANA

text: Eurasian lynx

characteristic: common name

text: Lynx lynx

text: Lynx lynx

text: Lynx lynx sample


text: ESTACION BIOLOGICA DE DONANA

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Spanish lynx

text: Lynx pardinus

text: Lynx pardinus

text: Lynx pardinus sample


text: Universita' degli Studi di Milano

text: public

characteristic: collection date

text: Italy

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: Human sample

text: Klebsiella pneumoniae

text: Klebsiella pneumoniae


text: DANONE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Gut Stool Microbiome


text: Clinical Bioinformatics Area

text: public

characteristic: collecting institution

text: not provided

characteristic: collector name

text: Spain

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status

text: AND01175, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND01203, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

text: AND01204, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

text: public

text: not provided

characteristic: collector name

text: Spain

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND01216, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND01232, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

text: AND01248, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

text: public

text: not provided

characteristic: collector name

text: Spain

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND01249, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND01250, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

text: AND01251, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

text: public

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

text: not provided

characteristic: collector name

text: Spain

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND01252, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND01253, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

text: AND01254, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

text: public

text: not provided

characteristic: collector name

text: Spain

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: sample capture status

text: AND01255, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Clinical Bioinformatics Area

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: not provided

text: Spain

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

characteristic: organism

text: AND01256, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: common name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

text: not provided

text: homo sapiens

text: not provided

text: not provided

text: not provided

text: AND01257, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

text: public

text: not provided

characteristic: collector name

text: Spain

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status

text: AND01262, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: NATIONAL INSTITUTE OF BIOLOGY

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:NATIONAL INSTITUTE OF BIOLOGY

text: 2 years

characteristic: age

text: wine grape

text: electrical conductivity

text: salinity treatment imposed by watering with saline medium

text: 0,8 dS m-1

text: Tempranillo

characteristic: genotype

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

characteristic: organism

text: adult

text: berry skin

text: control berry skin 1

characteristic: replicate

text: Vitis vinifera

text: National Institute of Biology, Ve�na pot 111, 1000 Ljubljana, Slovenia

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, control berry skin, replicate 1

characteristic: title

text: Field environment condition CO_715:0000162


text: NATIONAL INSTITUTE OF BIOLOGY

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2 years

text: wine grape

characteristic: common name

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, control berry skin, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, control berry skin, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, control leaf, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, control leaf, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, control leaf, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, salinity treated berry skin, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, salinity treated berry skin, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, salinity treated berry skin, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, salinity treated leaf, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, salinity treated leaf, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: 1103 Paulsen

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on 1103-Paulsen, salinity treated leaf, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, control berry skin, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, control berry skin, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: salinity treatment imposed by watering with saline medium

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, control berry skin, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 1

text: Vitis vinifera

text: National Institute of Biology, Ve�na pot 111, 1000 Ljubljana, Slovenia

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, control leaf, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, control leaf, replicate 2

text: Field environment condition CO_715:0000162


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, control leaf, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, salinity treated berry skin, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, salinity treated berry skin, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, salinity treated berry skin, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, salinity treated leaf, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, salinity treated leaf, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M1, salinity treated leaf, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, control berry skin, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, control berry skin, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: control berry skin 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, control berry skin, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, control leaf, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: salinity treatment imposed by watering with saline medium

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, control leaf, replicate 2


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 0,8 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: control leaf 3

text: Vitis vinifera

text: National Institute of Biology, Ve�na pot 111, 1000 Ljubljana, Slovenia

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, control leaf, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, salinity treated berry skin, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, salinity treated berry skin, replicate 2

text: Field environment condition CO_715:0000162


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: berry skin

text: salinity berry skin 3

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, salinity treated berry skin, replicate 3


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 1

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, salinity treated leaf, replicate 1


text: NATIONAL INSTITUTE OF BIOLOGY

text: public

text: 2 years

text: wine grape

text: electrical conductivity

text: 3,5 dS m-1

text: Tempranillo

text: 55 m

text: Spain

text: Vitis vinifera

text: adult

text: leaf

text: salinity leaf 2

text: Vitis vinifera

text: marusa.pompe.novak@nib.si

text: Marusa Pompe Novak

text: Tempranillo grafted on M4, salinity treated leaf, replicate 2


text: DANONE

text: public

text: human

text: Homo sapiens

text: Homo sapiens

text: Gut Stool Microbiome


text: Clinical Bioinformatics Area

text: public

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

characteristic: collecting institution

characteristic: collection date

text: not provided

characteristic: collector name

text: Spain

characteristic: geographic location (country and/or sea)

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: homo sapiens

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: active surveillance in response to outbreak

characteristic: sample capture status

text: AND02675, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Middle East Technical University

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:Middle East Technical University

text: sheep

text: Ovis aries

characteristic: organism

text: Ovis aries

text: Ulucak Höyük ancient sheep sample 2

characteristic: title


characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

characteristic: Submitter Id

characteristic: collection date

text: human-associated

characteristic: environment (biome)

text: human gut

characteristic: environment (feature)

text: feces

characteristic: environment (material)

text: Luxembourg

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: human-gut

characteristic: human gut environmental package

text: metagenome

characteristic: investigation type

text: metagenome

text: ex-BiomolXtract

characteristic: project name

text: metagenome

text: Illumina NextSeq 500

characteristic: sequencing method

text: int-DNA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: LUXEMBOURG CENTRE FOR SYSTEMS BIOMEDICINE

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: human-associated

text: human gut

text: feces

text: Luxembourg

characteristic: geographic location (country and/or sea)

text: human-gut

text: metagenome

text: metagenome

text: ex-BiomolXtract

text: metagenome

text: Illumina NextSeq 500

text: int-DNA


text: San Raffaele Scientific Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:San Raffaele Scientific Institute

characteristic: Submitter Id

text: NDM Oxford

characteristic: broker name

text: Mycobacterium

characteristic: genus

characteristic: isolate

text: Mycobacterium tuberculosis

characteristic: organism

text: Mycobacterium tuberculosis

text: 14009. San Raffaele Scientific Institute. 06MIL2020

characteristic: title

type: AMR curated data - CABBAGE

value: rifampin

value: EUCAST

value: broth dilution

value: mg/L

value: Sensititre

value: resistant

value: Mycobacterium tuberculosis

value: delamanid

value: susceptible

value: moxifloxacin

value: ethambutol

value: isoniazid

value: linezolid

value: cefpimizole

value: rifabutin

value: levofloxacin

value: amikacin

value: kanamycin

value: bedaquiline


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13375. San Raffaele Scientific Institute. 06MIL2021

value: EUCAST

value: broth dilution

value: rifampin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14011. San Raffaele Scientific Institute. 06MIL2022

value: mg/L

value: Sensititre

value: resistant

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13293. San Raffaele Scientific Institute. 06MIL2023

value: susceptible

value: Mycobacterium tuberculosis

value: delamanid

value: moxifloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13400. San Raffaele Scientific Institute. 06MIL2024

value: cefpimizole

value: ethambutol

value: isoniazid

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13403. San Raffaele Scientific Institute. 06MIL2025

value: kanamycin

value: amikacin

value: rifabutin

value: levofloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13285. San Raffaele Scientific Institute. 06MIL2026

value: EUCAST

value: broth dilution

value: bedaquiline

value: rifampin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13362. San Raffaele Scientific Institute. 06MIL2027

value: mg/L

value: Sensititre

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13286. San Raffaele Scientific Institute. 06MIL2028

value: susceptible

value: Mycobacterium tuberculosis

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13325. San Raffaele Scientific Institute. 06MIL2029


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13439. San Raffaele Scientific Institute. 06MIL2050

value: ethambutol

value: cefpimizole


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13367. San Raffaele Scientific Institute. 06MIL2051

value: isoniazid

value: moxifloxacin

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13269. San Raffaele Scientific Institute. 06MIL2052

value: kanamycin

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13394. San Raffaele Scientific Institute. 06MIL2053

value: EUCAST

value: rifabutin

value: levofloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13429. San Raffaele Scientific Institute. 06MIL2054

value: broth dilution

value: rifampin

value: bedaquiline


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13432. San Raffaele Scientific Institute. 06MIL2055

value: mg/L

value: Sensititre

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13372. San Raffaele Scientific Institute. 06MIL2056

value: susceptible

value: Mycobacterium tuberculosis

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13387. San Raffaele Scientific Institute. 06MIL2057

value: cefpimizole

value: ethambutol

value: isoniazid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13329. San Raffaele Scientific Institute. 06MIL2058


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13267. San Raffaele Scientific Institute. 06MIL2071

value: kanamycin

value: moxifloxacin

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13298. San Raffaele Scientific Institute. 06MIL2072

value: EUCAST

value: resistant

value: rifabutin

value: intermediate

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13306. San Raffaele Scientific Institute. 06MIL2073

value: broth dilution

value: mg/L

value: levofloxacin

value: rifampin

value: bedaquiline


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13327. San Raffaele Scientific Institute. 06MIL2074

value: ethionamide

value: Sensititre

value: susceptible

value: Mycobacterium tuberculosis

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13345. San Raffaele Scientific Institute. 06MIL2075

value: isoniazid

value: ethambutol

value: moxifloxacin

value: cefpimizole


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13427. San Raffaele Scientific Institute. 06MIL2077

value: EUCAST

value: kanamycin

value: resistant

value: linezolid

value: rifabutin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13358. San Raffaele Scientific Institute. 06MIL2078

value: broth dilution

value: mg/L

value: levofloxacin

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13383. San Raffaele Scientific Institute. 06MIL2079

value: bedaquiline

value: Sensititre

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13384. San Raffaele Scientific Institute. 06MIL2080

value: susceptible

value: Mycobacterium tuberculosis

value: rifampin

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13433. San Raffaele Scientific Institute. 06MIL2081

value: cefpimizole

value: moxifloxacin

value: isoniazid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13431. San Raffaele Scientific Institute. 06MIL2082

value: EUCAST

value: ethambutol

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13305. San Raffaele Scientific Institute. 06MIL2083


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13390. San Raffaele Scientific Institute. 06MIL2084

value: broth dilution

value: resistant

value: rifabutin

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13408. San Raffaele Scientific Institute. 06MIL2085

value: mg/L

value: levofloxacin

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13363. San Raffaele Scientific Institute. 06MIL2086

value: Sensititre

value: susceptible

value: ethionamide

value: bedaquiline


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13396. San Raffaele Scientific Institute. 06MIL2087

value: Mycobacterium tuberculosis

value: cefpimizole

value: delamanid

value: rifampin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13275. San Raffaele Scientific Institute. 06MIL2088

value: EUCAST

value: ethambutol

value: isoniazid

value: moxifloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13376. San Raffaele Scientific Institute. 06MIL2099

value: broth dilution

value: resistant

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13405. San Raffaele Scientific Institute. 06MIL2100

value: mg/L

value: rifabutin

value: linezolid

value: levofloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13391. San Raffaele Scientific Institute. 06MIL2101

value: Sensititre

value: susceptible

value: amikacin

value: intermediate

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13404. San Raffaele Scientific Institute. 06MIL2103

value: cefpimizole

value: Mycobacterium tuberculosis

value: bedaquiline

value: delamanid

value: rifampin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13308. San Raffaele Scientific Institute. 06MIL2104

value: EUCAST

value: broth dilution

value: ethambutol

value: isoniazid

value: moxifloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13307. San Raffaele Scientific Institute. 06MIL2105

value: linezolid

value: mg/L

value: rifabutin

value: resistant

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13312. San Raffaele Scientific Institute. 06MIL2106

value: Sensititre

value: susceptible

value: levofloxacin

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13385. San Raffaele Scientific Institute. 06MIL2107

value: Mycobacterium tuberculosis

value: bedaquiline

value: cefpimizole

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13428. San Raffaele Scientific Institute. 06MIL2108

value: EUCAST

value: broth dilution

value: rifampin

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13435. San Raffaele Scientific Institute. 06MIL2126

value: moxifloxacin

value: isoniazid

value: ethambutol

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13407. San Raffaele Scientific Institute. 06MIL2127


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13291. San Raffaele Scientific Institute. 06MIL2128

value: mg/L

value: kanamycin

value: rifabutin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13388. San Raffaele Scientific Institute. 06MIL2131

value: Sensititre

value: intermediate

value: susceptible

value: resistant

value: levofloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13303. San Raffaele Scientific Institute. 06MIL2132

value: Mycobacterium tuberculosis

value: ethionamide

value: bedaquiline

value: cefpimizole

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13434. San Raffaele Scientific Institute. 06MIL2133

value: EUCAST

value: broth dilution

value: rifampin

value: delamanid

value: moxifloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13304. San Raffaele Scientific Institute. 06MIL2134

value: mg/L

value: linezolid

value: ethambutol

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13272. San Raffaele Scientific Institute. 06MIL2135

value: Sensititre

value: susceptible

value: rifabutin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13263. San Raffaele Scientific Institute. 06MIL2139

value: intermediate

value: Mycobacterium tuberculosis

value: isoniazid

value: resistant

value: levofloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13297. San Raffaele Scientific Institute. 06MIL2140

value: cefpimizole

value: EUCAST

value: amikacin

value: bedaquiline

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13309. San Raffaele Scientific Institute. 06MIL2141

value: broth dilution

value: mg/L

value: moxifloxacin

value: delamanid

value: rifampin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13310. San Raffaele Scientific Institute. 06MIL2142

value: Sensititre

value: susceptible

value: kanamycin

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13311. San Raffaele Scientific Institute. 06MIL2143

value: ethambutol

value: Mycobacterium tuberculosis

value: rifabutin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13318. San Raffaele Scientific Institute. 06MIL2144

value: cefpimizole

value: levofloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13319. San Raffaele Scientific Institute. 06MIL2145

value: EUCAST

value: resistant

value: isoniazid

value: intermediate

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13320. San Raffaele Scientific Institute. 06MIL2146

value: broth dilution

value: mg/L

value: bedaquiline

value: ethionamide

value: moxifloxacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13323. San Raffaele Scientific Institute. 06MIL2147


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13324. San Raffaele Scientific Institute. 06MIL2148

value: Sensititre

value: susceptible

value: rifampin

value: delamanid

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13409. San Raffaele Scientific Institute. 06MIL2149

value: Mycobacterium tuberculosis

value: rifabutin

value: ethambutol

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13421. San Raffaele Scientific Institute. 06MIL2150

value: levofloxacin

value: EUCAST

value: resistant

value: cefpimizole

value: isoniazid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14014. San Raffaele Scientific Institute. 06MIL2153

value: broth dilution

value: mg/L

value: bedaquiline

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14015. San Raffaele Scientific Institute. 06MIL2154

value: Sensititre

value: susceptible

value: moxifloxacin

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14032. San Raffaele Scientific Institute. 06MIL2155

value: delamanid

value: Mycobacterium tuberculosis

value: rifampin

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14037. San Raffaele Scientific Institute. 06MIL2156

value: ethambutol

value: rifabutin

value: levofloxacin

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14005. San Raffaele Scientific Institute. 06MIL2157

value: EUCAST

value: isoniazid

value: resistant


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14006. San Raffaele Scientific Institute. 06MIL2158

value: broth dilution

value: mg/L

value: intermediate

value: bedaquiline

value: cefpimizole


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13425. San Raffaele Scientific Institute. 06MIL2159

value: moxifloxacin

value: Sensititre

value: susceptible

value: amikacin

value: ethionamide


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13415. San Raffaele Scientific Institute. 06MIL2160

value: Mycobacterium tuberculosis

value: rifampin

value: ethambutol

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14025. San Raffaele Scientific Institute. 06MIL2161

value: EUCAST

value: kanamycin

value: levofloxacin

value: rifabutin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 14012. San Raffaele Scientific Institute. 06MIL2162

value: broth dilution

value: mg/L

value: resistant

value: linezolid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13395. San Raffaele Scientific Institute. 06MIL2164

value: cefpimizole

value: isoniazid

value: moxifloxacin

value: bedaquiline


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13386. San Raffaele Scientific Institute. 06MIL2166

value: Sensititre

value: susceptible

value: ethionamide

value: amikacin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13381. San Raffaele Scientific Institute. 06MIL2167

value: Mycobacterium tuberculosis

value: rifampin

value: ethambutol

value: delamanid


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13379. San Raffaele Scientific Institute. 06MIL2168

value: EUCAST

value: rifabutin

value: levofloxacin

value: kanamycin


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13366. San Raffaele Scientific Institute. 06MIL2169

value: broth dilution

value: mg/L


text: San Raffaele Scientific Institute

text: public

text: NDM Oxford

text: Mycobacterium

text: Mycobacterium tuberculosis

text: Mycobacterium tuberculosis

text: 13357. San Raffaele Scientific Institute. 06MIL2171

value: cefpimizole

value: linezolid

value: isoniazid

value: resistant