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characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: public

characteristic: INSDC status

text: SIB

text: Unilabs, Dübendorf, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba5557c/2021

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

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text: public

characteristic: SRA accession

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text: SIB

characteristic: broker name

text: Unilabs, Dübendorf, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba5557d/2021


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characteristic: External Id

text: public

text: SIB

text: Unilabs, Dübendorf, Switzerland

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba5557e/2021

characteristic: organism


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Unilabs, Dübendorf, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba55580/2021

characteristic: isolate

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characteristic: ENA-FIRST-PUBLIC

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text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Unilabs, Dübendorf, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Verena Kufner, Gabriela Ziltener, Maryam Zaheri, Stefan Schmutz, Annette Audigé, Maria Grünberg, Kevin Steiner, Jon Huder, Cyril Shah, Riccarda Capaul, Guido Bloemberg, Jürg Böni, Michael Huber, Alexandra Trkola

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-UZH-IMV-3ba55582/2021


characteristic: GISAID Accession ID

text: Institute of Medical Virology, Zürich, Switzerland

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Unilabs, Dübendorf, Switzerland

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba55583/2021

characteristic: organism


characteristic: ENA-CHECKLIST

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text: British Antarctic Survey

text: public

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tag: Namespace:British Antarctic Survey

text: ArrayExpress

text: Protocols: Mussels were distributed between 48, 0.5L buckets (n=10 per bucket; total mussels n=480). The buckets had holes drilled to allow water to pass through exposing the mussels to air, simulating a low tide. The buckets were distributed between 12 aquaria, four for each of the three salinity conditions 5percent salinity, 15percent salinity and 23percent salinity. Within each salinity treatment, mussels were exposed to experimental air temperatures of 5 degree celsius, 30 degree celsius, and 33 degree celsius every 12th hour for 1.5 hr over a 6-day period. Each treatment combination had four replicate buckets, totalling 40 mussels per treatment combination. For a detailed methodological description of the mussel sampling procedure and physiological experimental design, see Nielsen et al. (2021).At the end of the experiment, mussel length was measured, and gill tissue dissected. Gill samples were flash frozen and stored at -80 degree celsius until use. Seven treatments were selected for transcriptomic analysis, based on the previous results of Nielsen et al. (2021). Individual mussel gill samples from each salinity and air temperature treatment were selected for RNA extraction (n=5 for each treatment). The seven treatments comprised the following conditions, hereafter referred to by the name in brackets: 23percent salinity at 5 degree celsius (control), 23percent salinity at 30 degree celsius (30 degree celsius), 23percent salinity at 33 degree celsius (33 degree celsius), 15percent salinity at 5 degree celsius (low salinity), 15percent salinity at 30 degree celsius (low salinity + 30 degree celsius), 15percent salinity at 33 degree celsius (low salinity + 33 degree celsius) and 5percent salinity at 5 degree celsius (very low salinity) (n=35 samples in total). SV total RNA isolation system (Promega) (which includes a DNase treatment), according to manufacturers' instructions All samples were checked for RNA purity and concentration on a NanoDrop (ThermoFisher) spectrophotometer and an Agilent TapeStation (Agilent). Thirty-five individual samples with an RNA integrity number (RIN) ≥ 8 were sent for library preparation at Novogene (Cambridge, UK).

characteristic: description

text: adult

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characteristic: environmental stress

text: wild type genotype

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text: mixed pool of 10 individuals

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text: Mytilus edulis

text: Mytilus edulis

text: gill

characteristic: organism part

text: Mytilus edulis

unit: Celsius

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text: British Antarctic Survey

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characteristic: SRA accession

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text: ArrayExpress

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text: adult

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text: 15 percent salinity

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characteristic: External Id

text: British Antarctic Survey

text: public

text: ArrayExpress

text: adult

text: normal

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text: wild type genotype

text: mixed pool of 10 individuals

text: Mytilus edulis

characteristic: organism

text: Mytilus edulis

text: gill

text: Mytilus edulis


characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

tag: Namespace:Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: SIB

text: Unilabs Ticino, Breganzona, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Martinetti Lucchini Gladys, Valeria Spina

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

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text: restricted access

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text: Homo sapiens

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text: restricted access

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text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

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text: SIB

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text: Unilabs Ticino, Breganzona, Switzerland

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26364830/2021

text: active surveillance in response to outbreak

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characteristic: GISAID Accession ID

text: public

characteristic: INSDC status

text: SIB

text: Unilabs Ticino, Breganzona, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

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characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26364847/2021

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text: Labor team w AG, St. Gallen / Goldach, Switzerland

text: Switzerland

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26371808/2021

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characteristic: INSDC center name

text: public

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text: Unilabs Ticino, Breganzona, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26371821/2021

characteristic: organism


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Labormedizinisches Zentrum Dr. Risch, Pregassona, Switzerland

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26366476/2021

characteristic: isolate

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text: Switzerland

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text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26366475/2021

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

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text: public

text: SIB

text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-032_26367343/2021

characteristic: organism


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

text: public

text: SIB

text: Synlab, Bioggio,Switzerland

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26379045/2021

characteristic: isolate

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text: public

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text: SIB

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text: Ospedale Regionale di Mendrisio Beata Vergine OBV, EOC, Mendrisio, Switzerland

characteristic: collecting institution

text: Martinetti Lucchini Gladys, Valeria Spina

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-032_26366382/2021

characteristic: title


characteristic: ENA-CHECKLIST

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text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC center name

text: public

text: SIB

text: EOC Ospedale Regionale Lugano, Lugano, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-012_26369286/2021

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

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text: public

text: SIB

text: EOC Ospedale Regionale Locarno ODL, Locarno, Switzerland

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-042_26369426/2021

characteristic: isolate

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characteristic: INSDC status

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characteristic: collecting institution

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-042_26367580/2021

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text: public

text: SIB

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26356536/2021

characteristic: organism


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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text: SIB

text: Switzerland

text: TI

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characteristic: host health state

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characteristic: host scientific name

text: restricted access

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26368868/2021

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26368756/2021

characteristic: title


characteristic: ENA-CHECKLIST

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text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26368890/2021

characteristic: organism


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

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text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26370110/2021

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text: SIB

characteristic: broker name

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text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26368874/2021

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collection date

text: Martinetti Lucchini Gladys, Valeria Spina

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

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text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26370313/2021

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text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC center name

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text: SIB

text: Switzerland

text: TI

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characteristic: host health state

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text: hCoV-19/Switzerland/TI-EOC-26368909/2021

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text: SIB

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text: Switzerland

text: TI

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text: restricted access

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text: hCoV-19/Switzerland/TI-EOC-26368955/2021

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text: Switzerland

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text: TI

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text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26368924/2021

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

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text: public

text: SIB

text: EOC Ospedale Regionale Lugano, Lugano, Switzerland

text: Switzerland

text: TI

text: Human

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characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

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characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-012_26350933/2021

characteristic: isolate

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characteristic: INSDC center name

text: public

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text: SIB

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text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26352311/2021

text: active surveillance in response to outbreak

characteristic: title


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

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text: public

text: SIB

text: EOC Ospedale Regionale Bellinzona e Valli, Bellinzona, Switzerland

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-022_26353258/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: INSDC center name

text: public

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text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: Switzerland

text: TI

text: Human

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characteristic: host health state

text: Homo sapiens

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text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26351660/2021

characteristic: isolate

characteristic: sample capture status


characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC first public

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text: public

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text: SIB

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text: EOC Ospedale Regionale di Mendrisio Beata Vergine, Mendriso, Switzerland

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text: Switzerland

text: TI

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text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26351498/2021

characteristic: title


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characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-EOC-26353281/2021

characteristic: organism


characteristic: External Id

characteristic: GISAID Accession ID

text: Laboratorio di Microbiologia, Dipartimento di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

characteristic: INSDC first public

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text: public

text: SIB

text: Switzerland

text: TI

text: Human

text: restricted access

characteristic: host health state

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characteristic: host scientific name

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characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/TI-EOC-26353866/2021

characteristic: isolate

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