text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Balneola sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Balneola sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 27d4415d-f4b6-41c4-91e3-34dda93d2d1f-asg-MAGScoT_cleanbin_000028


status: PUBLIC

text: Yes

tag: attribute

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: University Park, PA | Pennsylvania State University

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Cytophagales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Cytophagales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: taxonomic classification defined by topology and ANI

text: fb918bab-7dd5-46b2-8f4b-c4a741c45d53-asg-MAGScoT_cleanbin_000029

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Ulvibacterium sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Ulvibacterium sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 40d8580c-2cfc-4524-b3ab-290e7e8e622b-asg-MAGScoT_cleanbin_000030


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Cyclobacteriaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: bf73728e-472d-4a7f-ac9f-bec0af8ac5d5-asg-MAGScoT_cleanbin_000031

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Hyphobacterium sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Hyphobacterium sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 9cf7ff88-0c28-40ca-a9a8-8005ab687421-asg-MAGScoT_cleanbin_000032


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Nitratireductor aquibiodomus

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Nitratireductor aquibiodomus

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: d220a5ad-bcf8-4822-bab8-55951dde5718-asg-MAGScoT_cleanbin_000033

characteristic: title

text: pyBrePsyg23.Nitratireductor_aquibiodomus_1

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Marinoscillum sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Marinoscillum sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: f5e48981-4bc1-4efa-9df2-876707600a5c-asg-MAGScoT_cleanbin_000034


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Gracilimonas sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Gracilimonas sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: bafe52b6-2335-48ef-b9f4-bda7617936f4-asg-MAGScoT_cleanbin_000035

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Cyclobacteriaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: c04440b6-e4cc-4667-afd6-d848bae0ad66-asg-MAGScoT_cleanbin_000036


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Cyclobacteriaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: d21af01f-eab0-4d9f-837c-ab493740b03f-asg-MAGScoT_cleanbin_000037

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pyruvatibacter mobilis

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Pyruvatibacter mobilis

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 64c5fcd5-7ac7-4207-a3e1-74111906eb66-asg-MAGScoT_cleanbin_000038


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Vicingaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Vicingaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: c8cdc04f-f076-48b9-b0c7-821081521146-asg-MAGScoT_cleanbin_000039

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Cyclobacteriaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 7bf65b70-e105-457f-9ef6-09cd8f831aad-asg-MAGScoT_cleanbin_000040


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: University Park, PA | Pennsylvania State University

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Alcanivorax sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alcanivorax sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: 6ba21fca-39e4-43cc-a3ec-2762efa222bd-asg-MAGScoT_cleanbin_000041

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Dehalococcoidia bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Dehalococcoidia bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification fully defined by topology

characteristic: taxonomic identity marker

text: 59723005-d7fb-4167-b017-fb411d0cf88a-asg-MAGScoT_cleanbin_000043


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Pirellulales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pirellulales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 6e7ebcb4-9be1-4cbf-999d-007ef4825789-asg-MAGScoT_cleanbin_000044

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Phycisphaerales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Phycisphaerales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 24bfb2b0-0bc0-47df-81b4-c513fc01a924-asg-MAGScoT_cleanbin_000046


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Leptospirales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Leptospirales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 7623ca73-de5f-42cc-a799-405a5f008d8c-asg-MAGScoT_cleanbin_000047

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Ilumatobacteraceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Ilumatobacteraceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: ee343e59-867e-4763-8468-b2690ad66cb9-asg-MAGScoT_cleanbin_000048


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Bythopirellula sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Bythopirellula sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: a23da1fa-4258-4937-963d-949696e3e025-asg-MAGScoT_cleanbin_000050

characteristic: title

characteristic: tolid


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NOT PROVIDED

characteristic: barcoding center

text: terrestrial biome

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

unit: m

characteristic: elevation

text: adult lichen tissue

text: Spain

characteristic: geographic location (country and/or sea)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

text: Rock outcrops on Frejulfe beach, intertidal zone.

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: bedrock

text: lichen metagenome

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: lichen metagenome

text: 05324445-ac38-48c7-b70c-ddee0b7f97e1-asg-metagenome


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

text: The Sainsbury Laboratory

text: NOT PROVIDED

text: Tree of Life Programme

text: public

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: habitat

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Lewinella sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: uncultured Lewinella sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 2775982a-4a27-4df3-a81d-b37a73edac20-asg-bin.11

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: Waterburya sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: Waterburya sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: ANI

text: 6c628197-f106-43b3-ab4e-3f968ef8d2ec-asg-bin.19


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: adult lichen tissue

text: Spain

text: Asturias | Frjulfe

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Phormidesmis sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: uncultured Phormidesmis sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 12f6bc4a-474b-4683-bad9-eaaedb6d7f69-asg-bin.32

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: Palleronia sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: Palleronia sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: 90d16599-2749-4101-97f4-dc8f7e88edad-asg-bin.35


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: adult lichen tissue

text: Spain

text: Asturias | Frjulfe

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Granulosicoccus sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: Granulosicoccus sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: ANI

characteristic: taxonomic identity marker

text: 7b969c2f-a93a-4774-a973-d6d896896939-asg-bin.3

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: Jannaschia sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: Jannaschia sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: ANI

text: 64b834af-5211-433d-9fec-de3a7f534809-asg-bin.40


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: adult lichen tissue

text: Spain

text: Asturias | Frjulfe

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Granulosicoccaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: Granulosicoccaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: d709008c-83e1-42aa-bd4e-b41e21558152-asg-bin.41

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: Waterburya sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: Waterburya sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: ANI

text: 5243a23e-5215-428d-8f82-ede68a16bbdd-asg-bin.47


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: adult lichen tissue

text: Spain

text: Asturias | Frjulfe

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Waterburya sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: Waterburya sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: b9032e61-f94a-45c6-a1f5-e724bf42920c-asg-bin.5

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: uncultured Lewinella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: uncultured Lewinella sp.

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: ANI

text: e60adce5-312b-4329-87bf-56330c1aaa13-asg-bin.68


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: adult lichen tissue

text: Spain

text: Asturias | Frjulfe

text: Rock outcrops on Frejulfe beach, intertidal zone.

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Tunicatimonas sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: Tunicatimonas sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 53302e27-79fc-4a18-af7b-f480b93eed45-asg-bin.15

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

text: MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: Rivularia sp. (in: cyanobacteria)

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: Rivularia sp. (in: cyanobacteria)

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: beb1a3fd-4142-4b91-b7aa-4b2fb1984bcf-asg-bin.1

text: glLicPygm3.Rivularia_sp_(in:_cyanobacteria)_1


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

text: adult lichen tissue

text: Spain

text: Asturias | Frjulfe

text: vegetative structure

characteristic: host life stage

text: Lichina pygmaea

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

characteristic: investigation type

text: Lichen: Lichina pygmaea

text: bedrock

characteristic: local environmental context

text: lichen metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Granulosicoccaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

text: Lichen

text: COLLECTED BY HAND

characteristic: sample derived from

text: Granulosicoccaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic novelty determined using RED

characteristic: taxonomic identity marker

text: 063d36f9-0927-4e6b-82e9-7393bce4cd57-asg-bin.54

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: The Sainsbury Laboratory

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: NOT PROVIDED

characteristic: barcoding center

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: terrestrial biome

characteristic: broad-scale environmental context

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: elevation

text: adult lichen tissue

characteristic: environmental medium

text: Spain

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Asturias | Frjulfe

characteristic: geographic location (region and locality)

characteristic: habitat

text: vegetative structure

text: Lichina pygmaea

text: not applicable

characteristic: host sex

text: Sergio Perez-Ortega

text: Real Jardín Botánico, CSIC

text: metagenome-assembled genome

text: Lichen: Lichina pygmaea

text: bedrock

text: lichen metagenome

text: Rivularia sp. (in: cyanobacteria)

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Lichen

characteristic: relationship

text: COLLECTED BY HAND

characteristic: sample collection device or method

text: Rivularia sp. (in: cyanobacteria)

text: Pacbio Sequel II

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: e4d53434-fe93-44d6-a006-3b8e436d63b4-asg-bin.75

text: glLicPygm3.Rivularia_sp_(in:_cyanobacteria)_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Respiratory Virus Unit, Microbiology Services Colindale, Public Health England

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: COVID-19 Genomics UK Consortium

characteristic: broker name

text: not provided

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: United Kingdom

text: England

text: not provided

characteristic: host common name

text: not provided

characteristic: host health state

text: Human

characteristic: host scientific name

text: not provided

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: receipt date

text: active surveillance in response to outbreak

characteristic: sample capture status

text: not provided

characteristic: serotype (required for a seropositive sample)

characteristic: title

text: not provided

characteristic: virus identifier


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: West of Scotland Specialist Virology Centre, NHSGGC / MRC-University of Glasgow Centre for Virus Research

characteristic: INSDC center name

text: public

text: COVID-19 Genomics UK Consortium

characteristic: collecting institution

characteristic: collection date

text: not provided

text: not provided

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

characteristic: geographic location (region and locality)

text: not provided

text: not provided

text: Human

text: not provided

characteristic: host sex

text: not provided

text: not provided

characteristic: organism

text: not provided

text: not provided


text: Institute for Infectious Diseases, Bern, Switzerland

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_04/2024

text: active surveillance not initiated by an outbreak


characteristic: ENA first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-240205_os_11/2024

characteristic: isolate

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_09/2024


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_15/2024

characteristic: organism


text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_18/2024


characteristic: ENA first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-240205_os_05/2024

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_13/2024

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_12/2024


text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_06/2024

characteristic: organism


characteristic: ENA first public

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-240205_os_08/2024

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_16/2024

text: Severe acute respiratory syndrome coronavirus 2

characteristic: sample capture status


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_03/2024

characteristic: title


text: Institute for Infectious Diseases, Bern, Switzerland

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_07/2024


characteristic: ENA first public

text: public

text: SIB

text: Institute for Infectious Diseases, University of Bern, Switzerland

text: Lea Stauber, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-240205_os_10/2024

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_01/2024

characteristic: isolate

text: active surveillance not initiated by an outbreak


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_02/2024

characteristic: sample capture status


text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-240205_os_14/2024

characteristic: title


characteristic: ENA first public

text: HUG

text: public

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

text: GE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-43719790/2024


characteristic: ENA-CHECKLIST

text: HUG

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-SNRCI-HUG-43732408/2024

characteristic: organism

text: other


text: HUG

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-SNRCI-HUG-43675568/2024

characteristic: isolate

text: other


text: HUG

text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: GE

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-43689492/2024

characteristic: sample capture status


characteristic: ENA first public

text: HUG

text: public

text: SIB

text: Switzerland

text: BE

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/BE-SNRCI-HUG-43675976/2024

text: Severe acute respiratory syndrome coronavirus 2

text: other

characteristic: title


characteristic: ENA-CHECKLIST

text: HUG

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-43679319/2024


text: HUG

text: public

characteristic: INSDC status

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text: Laboratorio di Microbiologia, Istituto di Medicina di Laboratorio EOLAB, Ente Ospedaliero Cantonale, Bellinzona, Switzerland

text: Martinetti Lucchini Gladys, Valeria Spina, Gloria Gaudio

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text: Valais Hospital, Central Institute; Sion, Switzerland

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text: Alexis Dumoulin, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

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text: Human

text: restricted access

text: Homo sapiens

text: restricted access

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text: hCoV-19/Switzerland/VS-ICH-2240120888/2024

text: active surveillance not initiated by an outbreak

characteristic: title


text: public

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text: hCoV-19/Switzerland/VS-ICH-2240138120/2024

characteristic: organism


characteristic: ENA first public

text: public

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text: restricted access

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text: hCoV-19/Switzerland/VS-ICH-2240114692/2024

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characteristic: ENA-CHECKLIST

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text: Switzerland

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text: hCoV-19/Switzerland/VS-ICH-2240127709/2024

characteristic: sample capture status


text: public

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characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240138362/2024

text: Severe acute respiratory syndrome coronavirus 2

characteristic: title


text: public

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text: Switzerland

text: VS

text: Human

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text: restricted access

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characteristic: host subject id

text: hCoV-19/Switzerland/VS-ICH-2240115002/2024


characteristic: ENA first public

text: public

text: SIB

text: Switzerland

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text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240119087/2024

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characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

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characteristic: collecting institution

characteristic: collection date

text: Switzerland

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text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240112837/2024

characteristic: isolate


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240120353/2024

characteristic: sample capture status


text: public

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text: SIB

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text: Switzerland

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text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240130451/2024

characteristic: title


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text: public

text: SIB

text: Switzerland

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text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VS-ICH-2240132548/2024


characteristic: ENA-CHECKLIST

text: Hopital du Valais, Institut Central des Hopitaux, Sion, Switzerland

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: VS

text: Human

text: restricted access

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text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240131994/2024

characteristic: organism


text: public

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characteristic: SRA accession

text: SIB

text: Valais Hospital, Central Institute; Sion, Switzerland

text: Alexis Dumoulin, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240138004/2024

characteristic: isolate


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characteristic: collector name

text: Switzerland

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characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240119345/2024

text: active surveillance not initiated by an outbreak

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text: public

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text: Switzerland

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characteristic: host health state

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characteristic: host sex

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characteristic: ENA-CHECKLIST

characteristic: INSDC center name

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characteristic: collecting institution

characteristic: collection date

text: Switzerland

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text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VS-ICH-2240120814/2024


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240115645/2024

characteristic: organism


text: public

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collector name

text: Switzerland

text: VS

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240132662/2024

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA first public

text: public

text: SIB

text: Switzerland

text: VS

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

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text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240126514/2024

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: SIB

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: VS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VS-ICH-2240140630/2024

characteristic: title


text: public

characteristic: INSDC status

characteristic: SRA accession

text: SIB

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VS

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VS-ICH-2240139812/2024


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SRA-Webin

characteristic: ENA-SUBMISSION-TOOL

characteristic: External Id

text: UP-IGM

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: Submitter Id

text: Mycobacterium canettii

characteristic: organism

text: Mycobacterium canettii


unit: mg Chl/m3

characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: Event Date/Time End

text: GSC

characteristic: INSDC center name

text: public

characteristic: Latitude End

characteristic: Longitude End

unit: practical salinity unit

characteristic: Salinity Sensor

characteristic: depth

text: This cell was isolated using flow cytometry from a water sample (TARA_G000000266) collected during the Tara Oceans expedition (2009-2013) at station TARA_039 (latitudeN=18.5918, longitudeE=66.622) on date/time=2010-03-18T04:27, using a PUMP (High Volume Peristaltic Pump). The water sample material was collected at a depth of 3-7 m, targeting a surface water layer (ENVO:00002042) in the marine biome (ENVO:00000447). The water sample was NOT size-fractionated, preserved on board with 48% Glycine Betaine, and stored in liquid nitrogen for later detection of unicellular eukaryote (protist) whole-genome by pyrosequencing methods, and for later single cell genomics analysis. The sampled cell has been identified by pyrosequencing methods and amplified using Multiple Displacement Amplification (MDA).

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

text: surface water layer (ENVO:00002042)

characteristic: environment (feature)

text: saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

characteristic: event label

text: tbd

characteristic: further details

characteristic: latitude start

characteristic: longitude start

unit: µmol/L

characteristic: nitrate sensor

text: Bathycoccus sp. TOSAG39-1

unit: µmol/kg

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: project name

text: This cell was isolated using a MoFlo flow cytometer equipped with a 488 nm laser for excitation. This cell was considered as an heterotrophic protist based on the presence of SYBR Green I fluorescence and the absence of chlorophyll fluorescence. The cell was then lysed using cold KOH and its DNA was amplified using multiple displacement amplification (MDA). Flow-cytometric sorting and whole genome amplification were performed by the Bigelow Laboratory Single Cell Genomics Center.

characteristic: protocol description

characteristic: protocol label

text: PUMP (High Volume Peristaltic Pump)

characteristic: sample collection device

characteristic: sample derived from

text: This version can be used to provide data discovery services

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: Bathycoccus sp. TOSAG39-1

unit: ºC

characteristic: temperature

text: Single Amplified Genome TOSAG39-1_AMAI_cell1


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

text: surface water layer (ENVO:00002042)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

text: tbd

text: Bathycoccus sp. TOSAG39-1

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: PUMP (High Volume Peristaltic Pump)

text: SV Tara

text: Bathycoccus sp. TOSAG39-1

text: Single Amplified Genome TOSAG39-1_AMBI_cell2

characteristic: title


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: marine biome (ENVO:00000447)

text: surface water layer (ENVO:00002042)

text: water

characteristic: event label

text: tbd

characteristic: further details

characteristic: latitude start

characteristic: longitude start

characteristic: nitrate sensor

text: Bathycoccus sp. TOSAG39-1

characteristic: oxygen sensor

text: Tara Oceans expedition (2009-2013)

characteristic: project name

characteristic: protocol description

characteristic: protocol label

text: PUMP (High Volume Peristaltic Pump)

characteristic: sample collection device

characteristic: sample derived from

characteristic: sample status

characteristic: sampling campaign

text: SV Tara

characteristic: sampling platform

characteristic: sampling station

text: Bathycoccus sp. TOSAG39-1

characteristic: temperature

text: Single Amplified Genome TOSAG39-1_AMCI_cell3


characteristic: Chlorophyll Sensor

text: tbd

characteristic: Citation

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: Event Date/Time End

characteristic: External Id

text: GSC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Latitude End

characteristic: Longitude End

characteristic: SRA accession

characteristic: Salinity Sensor

characteristic: Submitter Id

characteristic: depth

characteristic: description

text: marine biome (ENVO:00000447)

characteristic: environment (biome)

text: surface water layer (ENVO:00002042)

characteristic: environment (feature)

characteristic: environment (material)

text: water

characteristic: environmental package

characteristic: event date/time start

text: tbd

text: Bathycoccus sp. TOSAG39-1

characteristic: organism

text: Tara Oceans expedition (2009-2013)

text: PUMP (High Volume Peristaltic Pump)

text: SV Tara

text: Bathycoccus sp. TOSAG39-1

text: Single Amplified Genome TOSAG39-1_AMDI_cell4

characteristic: title