characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: 2016-12-09 0:00

text: TRUE

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

text: research facility

text: misc environment

text: sterile water

text: USA:CA:San Diego

text: g

text: UC San Diego

text: Decimal degrees

text: Decimal degrees

text: metagenome

text: Kumar Lab, UCSD

text: TRUE

text: control blank DNA extraction

text: metagenome

text: In-house


status: PUBLIC

tag: attribute

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

text: public

text: 2016-12-09 0:00

text: TRUE

characteristic: elevation

text: meters

text: Control

text: Negative

text: Sterile water blank

text: urban biome

characteristic: env biome

text: research facility

characteristic: env feature

text: misc environment

characteristic: env package

text: sterile water

text: USA:CA:San Diego

characteristic: geo loc name

characteristic: host subject id

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

characteristic: longitude

text: Decimal degrees

text: metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: control blank DNA extraction

characteristic: sample type

text: metagenome

text: In-house

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UCSDMI

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: cage id

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

characteristic: collection method

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 2/10/16 9:00

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/10/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/10/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/10/16 10:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Ja18-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Ja18-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/12/16 9:00

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/12/16 9:00

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage17.female.WT12

text: 2/12/16 9:00

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage17.female.WT13

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/12/16 9:00

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/12/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: CD1d-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/10/16 9:00

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/12/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/12/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/12/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage23.female.Qa10

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/12/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/12/16 10:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Ja18-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Ja18-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/12/16 10:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Ja18-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Ja18-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage26.female.Ja10

text: 2/12/16 10:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Ja18-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Ja18-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/12/16 10:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Ja18-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Ja18-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/12/16 10:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Ja18-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Ja18-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage30.male.WT.CSAA1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:00

text: WT+CSAA

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CSAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage30.male.WT.CSAA2

text: 12/16/15 9:00

text: WT+CSAA

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CSAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage30.male.WT.CSAA3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:00

text: WT+CSAA

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CSAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage30.male.WT.CSAA4

text: 12/16/15 9:00

text: WT+CSAA

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CSAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage31.male.WT.CDAA1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:00

text: WT+CDAA

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage31.male.WT.CDAA2

text: 12/16/15 9:00

text: WT+CDAA

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage31.male.WT.CDAA3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:00

text: WT+CDAA

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage31.male.WT.CDAA4

text: 12/16/15 9:00

text: WT+CDAA

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage31.male.WT.CDAA5

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:00

text: WT+CDAA

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage32.male.WT.CDAA.Sulf1

text: 12/16/15 9:30

text: WT+CDAA+SULFATIDE

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA+SULFATIDE

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: Yes

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA+SULFATIDE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage32.male.WT.CDAA.Sulf2

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: WT+CDAA+SULFATIDE

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA+SULFATIDE

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: Yes

text: No

text: not provided

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1

text: WT+CDAA+SULFATIDE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage32.male.WT.CDAA.Sulf3

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 12/16/15 9:30

text: WT+CDAA+SULFATIDE

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA+SULFATIDE

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: Yes

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA+SULFATIDE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage32.male.WT.CDAA.Sulf4

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: WT+CDAA+SULFATIDE

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA+SULFATIDE

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: Yes

text: No

text: not provided

characteristic: title

text: WT+CDAA+SULFATIDE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage32.male.WT.CDAA.Sulf5

text: 12/16/15 9:30

text: WT+CDAA+SULFATIDE

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA+SULFATIDE

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: Yes

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA+SULFATIDE


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage33.male.WT.CDAA.Taz300.1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: Yes

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage33.male.WT.CDAA.Taz300.2

text: 12/16/15 9:30

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: Yes

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage33.male.WT.CDAA.Taz300.3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: Yes

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage33.male.WT.CDAA.Taz300.4

text: 12/16/15 9:30

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: Yes

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage33.male.WT.CDAA.Taz300.5

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: Yes

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage34.male.WT.CDAA.Taz600.1

text: 12/16/15 9:30

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: Yes

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage34.male.WT.CDAA.Taz600.2

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: Yes

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage34.male.WT.CDAA.Taz600.3

text: 12/16/15 9:30

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: Yes

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage34.male.WT.CDAA.Taz600.4

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 12/16/15 9:30

text: CDAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: Yes

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage34.male.WT.CDAA.Taz600.5

text: 12/16/15 9:30

characteristic: description

text: CDAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: Yes

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage35.male.WT.CSAA5

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:00

text: WT+CSAA

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CSAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage35.male.WT.CSAA6

text: 3/22/16 9:00

text: WT+CSAA

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CSAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: NKT cell- NASH murine model - Microbiome: study 1

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage35.male.WT.CSAA7

characteristic: Submitter Id

characteristic: cage id

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

characteristic: collection method

text: 3/22/16 9:00

text: WT+CSAA

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CSAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage35.male.WT.CSAA8

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 3/22/16 9:00

text: WT+CSAA

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CSAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CSAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage36.male.WT.CDAA6

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:00

text: WT+CDAA

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage36.male.WT.CDAA7

text: 3/22/16 9:00

text: WT+CDAA

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage36.male.WT.CDAA8

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:00

text: WT+CDAA

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+CDAA

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage36.male.WT.CDAA9

text: 3/22/16 9:00

text: WT+CDAA

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+CDAA

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+CDAA


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage37.male.CD1d.CSAA1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:30

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage37.male.CD1d.CSAA2

text: 3/22/16 9:30

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage37.male.CD1d.CSAA3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:30

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage37.male.CD1d.CSAA4

text: 3/22/16 9:30

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage37.male.CD1d.CSAA5

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:30

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage38.male.CD1d.CDAA1

text: 3/22/16 9:30

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage38.male.CD1d.CDAA2

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:30

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage38.male.CD1d.CDAA3

text: 3/22/16 9:30

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage38.male.CD1d.CDAA4

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/22/16 9:30

text: CSAA

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage38.male.CD1d.CDAA5

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

text: 3/22/16 9:30

characteristic: description

text: CSAA

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage39.male.WT.Alc1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 3/3/16 18:00

text: WT+Alc

text: Alcoholic

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+Alc

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+Alc


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage39.male.WT.Alc2

text: 3/3/16 18:00

text: WT+Alc

characteristic: description

text: Alcoholic

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+Alc

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+Alc


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage39.male.WT.Alc3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/3/16 18:00

text: WT+Alc

text: Alcoholic

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+Alc

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+Alc