characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage39.male.WT.Alc4

text: 3/3/16 18:00

text: WT+Alc

characteristic: description

text: Alcoholic

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+Alc

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+Alc


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage39.male.WT.Alc5

characteristic: Submitter Id

characteristic: cage id

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

characteristic: collection method

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 3/3/16 18:00

text: WT+Alc

text: Alcoholic

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+Alc

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1

text: WT+Alc


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/10/16 9:00

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage40.male.WT.Alc.M1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/3/16 18:00

text: WT+Alc+Milto

text: Alcoholic

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+Alc+Milto

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: Yes

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+Alc+Milto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage40.male.WT.Alc.M2

text: 3/3/16 18:00

text: WT+Alc+Milto

characteristic: description

text: Alcoholic

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+Alc+Milto

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: Yes

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+Alc+Milto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage40.male.WT.Alc.M3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/3/16 18:00

text: WT+Alc+Milto

text: Alcoholic

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+Alc+Milto

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: Yes

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+Alc+Milto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage40.male.WT.Alc.M4

text: 3/3/16 18:00

text: WT+Alc+Milto

characteristic: description

text: Alcoholic

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT+Alc+Milto

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: Yes

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT+Alc+Milto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage40.male.WT.Alc.M5

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/3/16 18:00

text: WT+Alc+Milto

text: Alcoholic

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT+Alc+Milto

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: Yes

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT+Alc+Milto


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage41.female.CD1d5

text: 10/11/16 9:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: CD1d-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage41.female.CD1d6

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 9:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: CD1d-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage41.female.CD1d7

text: 10/11/16 9:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: CD1d-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 9:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: CD1d-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 10/11/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage44.female.Qa11

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage44.female.Qa12

text: 10/11/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage44.female.Qa13

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 10/11/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage46.female.Qa14

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage49.female.Qa15

text: 10/11/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage49.female.Qa16

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage49.female.Qa17

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

text: 10/11/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage49.female.Qa18

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 10/11/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/10/16 9:00

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage50.female.Qa19

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage50.female.Qa20

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage50.female.Qa21

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage50.female.Qa22

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage50.female.Qa23

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage51.female.Qa24

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage51.female.Qa25

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage51.female.Qa26

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage53.female.Qa27

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage54.female.Qa28

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage56.female.Qa29

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage56.female.Qa30

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/11/16 10:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: Qa-1-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage56.female.Qa31

text: 10/11/16 10:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: Qa-1-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: Qa-1-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage57.female.WT14

characteristic: Submitter Id

characteristic: cage id

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

characteristic: collection method

text: 10/11/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage57.female.WT15

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 10/12/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage57.female.WT16

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/13/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage57.female.WT17

text: 10/14/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage58.female.WT18

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/15/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage58.female.WT19

text: 10/16/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage58.female.WT20

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/17/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage58.female.WT21

text: 10/18/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage59.female.WT22

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/19/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage59.female.WT23

text: 10/20/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage59.female.WT24

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/21/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage59.female.WT25

text: 10/22/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/10/16 9:00

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/10/16 9:00

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/23/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 10/24/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 10/25/16 10:30

text: WT

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: WT-none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: WT

text: Jackson

text: No

text: No

text: not provided

characteristic: title

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 10/26/16 10:30

text: WT

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: WT-none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: WT

text: Jackson

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: WT-none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage62.male.ST.Alc1

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/3/16 0:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: ST2-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: ST2-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage62.male.ST.Alc2

text: 3/3/16 0:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: ST2-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: ST2-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage62.male.ST.Alc3

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 3/3/16 0:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: ST2-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: ST2-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage62.male.ST.Alc4

text: Fresh fecal pellets (3-4) were collected individually from mice (each mouse was placed in a confined place to avoid cross-contamination) using sterile cotton swabs into individually labeled sterile 0.6 ml Eppendorf tube. Samples were collected during two days from colonies of mice of mixed age and sex that were maintained in our animal facility for a minimum of 2-3 weeks to 8 months. Following collection, tubes containing stool samples were stored at minus 80 C until analysis.

text: 3/3/16 0:00

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: ST2-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: ST2-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: cotton swabs into sterile 0.6 ml Eppendorf tube

text: 3/3/16 0:00

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: ST2-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: male

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: ST2-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage7.female.CD1d1

text: 2/10/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: CD1d-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage7.female.CD1d2

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/10/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: CD1d-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: NKT cell- NASH murine model - Microbiome: study 1

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: qiita_sid_10781:10781.Cage7.female.CD1d3

text: 2/10/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: CD1d-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: female

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: qiita_sid_10781:10781.Cage7.female.CD1d4

characteristic: Submitter Id

characteristic: cage id

characteristic: collection method

text: 2/10/16 9:30

text: Normal

text: TRUE

characteristic: elevation

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

characteristic: env biome

text: animal-associated habitat

characteristic: env feature

text: host-associated

characteristic: env package

text: feces

text: CD1d-/- none

text: USA:CA:San Diego

characteristic: geo loc name

text: UBERON:feces

text: UBERON:feces

text: UBERON:feces

text: mouse

text: adult

text: Mus musculus

characteristic: host subject id

text: not provided

text: weeks

text: g

text: UC San Diego

characteristic: latitude

text: Decimal degrees

text: adult

characteristic: longitude

text: Decimal degrees

text: No

text: mouse gut metagenome

characteristic: organism

text: Kumar Lab, UCSD

text: TRUE

characteristic: sample number

text: feces

characteristic: sample type

text: mouse gut metagenome

text: female

text: In-house

text: No

text: No

text: not provided

characteristic: title

text: CD1d-/- none


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UCSDMI

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: 2/10/16 9:30

characteristic: description

text: Normal

characteristic: diet

text: TRUE

text: meters

text: Host-associated

text: Animal

text: Animal distal gut

text: urban biome

text: animal-associated habitat

text: host-associated

text: feces

text: CD1d-/- none

characteristic: experimental group

text: USA:CA:San Diego

characteristic: host age

text: UBERON:feces

characteristic: host body habitat

text: UBERON:feces

characteristic: host body product

text: UBERON:feces

characteristic: host body site

text: mouse

characteristic: host common name

text: adult

characteristic: host life stage

text: Mus musculus

characteristic: host scientific name

characteristic: host taxid

text: not provided

characteristic: host weight

text: weeks

text: g

text: UC San Diego

text: Decimal degrees

text: adult

characteristic: life stage

text: Decimal degrees

text: No

text: mouse gut metagenome

text: Kumar Lab, UCSD

text: TRUE

text: feces

text: mouse gut metagenome

text: male

characteristic: sex

text: In-house

text: No

characteristic: sulfatide

text: No

text: not provided

characteristic: time point

text: CD1d-/- none