characteristic: GISAID Accession ID

text: public

text: SIB

characteristic: broker name

text: Luzerner Kantonsspital Luzern, Zentrum für Labormedizin ZLM; Luzern, Switzerland

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-IFIK-4394-9939/2021

characteristic: isolate


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Laboratory Plymouth

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


text: SC

text: public

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: United Kingdom

text: England

text: Human


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: LU

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-IFIK-4395-9940/2021

characteristic: isolate


text: Institute for Infectious Diseases, Bern, Switzerland

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Inselspital Bern (Covid-Track); Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4422-0010/2021

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Inselspital Bern; Bern, Switzerland

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4423-0013/2021


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Spital Langnau i.E.; Langnau i.E., Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-4424-0049/2021

characteristic: isolate


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collection date

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4425-0063/2021

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4426-0107/2021


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: SIB

characteristic: collector name

text: Switzerland

text: BE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-4427-0109/2021

characteristic: isolate


characteristic: GISAID Accession ID

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

characteristic: collection date

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4428-0163/2021

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4429-0167/2021


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: Scotland

text: Human

text: Severe acute respiratory syndrome coronavirus 2


text: SC

text: public

text: SC

text: Lighthouse Lab in Glasgow

characteristic: collection date

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: host scientific name

characteristic: organism

text: active surveillance in response to outbreak


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Samples prepared at Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh by McHugh M, Dewar R, Rooke S, O'Toole Á, Scher E, Hill V, McCrone JT, Colquhoun R, Yu X, Jackson B, Rambaut A, Templeton K and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Virology Department, Royal Infirmary of Edinburgh, NHS Lothian / School of Biological Sciences, University of Edinburgh

characteristic: collecting institution

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human


characteristic: GISAID Accession ID

text: Institute for Infectious Diseases, Bern, Switzerland

text: public

text: SIB

text: Inselspital Bern (Covid-Track); Bern, Switzerland

characteristic: collection date

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-4430-0186/2021

characteristic: isolate

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Regionalspital Emmental AG Burgdorf, Labor; Burgdorf, Switzerland

characteristic: collecting institution

text: Switzerland

text: BE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BE-IFIK-4431-2330/2021

characteristic: sample capture status

characteristic: title


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collection date

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

text: England

text: Human

characteristic: host scientific name

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

text: United Kingdom

text: England

text: Human


text: SC

text: public

characteristic: Submitter Id

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

text: United Kingdom

text: Wales

text: Human

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SC

text: United Kingdom

text: Wales

text: Human

characteristic: title


text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

characteristic: collection date

characteristic: description

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

text: public

text: SC

text: Health Services Laboratories

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: host scientific name

characteristic: organism


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

text: Scotland

text: Human


characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

tag: Namespace:University Hospital Basel

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Rothen Medizinische Laboratorien AG, Basel, Switzerland

characteristic: collecting institution

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Ingrid Steffen, Manuel Battegay, Hans Hirsch, Adrian Egli

characteristic: collector name

text: Switzerland

text: BS

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43158774/2021

characteristic: isolate

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Synlab Suisse SA, Luzern, Switzerland

characteristic: collection date

text: Tim Roloff, Fanny Wegner, Helena MB Seth-Smith, Alfredo Mari, Karoline Leuzinger, Julia Bielicki, Manuel Battegay, Hans Hirsch, Adrian Egli

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UHB-43165384/2021

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Clinical Virology, University Hospital Basel, Basel, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43045492/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human

characteristic: sample capture status


text: University Hospital Basel

characteristic: INSDC last update

text: public

text: SIB

text: Synlab Suisse SA, Luzern, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UHB-43155328/2021

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

text: Synlab Suisse SA, Luzern, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UHB-43155428/2021

characteristic: organism


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: SIB

text: Synlab Suisse SA, Luzern, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: LU

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/LU-UHB-43155495/2021

characteristic: sample capture status


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: INSDC status

text: SIB

text: Synlab Suisse SA, Luzern, Switzerland

text: Switzerland

text: LU

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/LU-UHB-43157764/2021

characteristic: isolate

characteristic: title


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-65306521/2021

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

text: SIB

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BS

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BS-UHB-43169331/2021

characteristic: sample capture status


characteristic: ENA-FIRST-PUBLIC

text: University Hospital Basel

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SIB

text: Switzerland

text: BS

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BS-UHB-43169474/2021

characteristic: isolate

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: GISAID Accession ID

text: University Hospital Basel

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

characteristic: broker name

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: BL

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/BL-UHB-43169999/2021

characteristic: organism


characteristic: ENA first public

text: FRIEDRICH-LOEFFLER-INSTITUT (FLI) Institute for Bacterial Infections and Zoonoses (IBIZ)

characteristic: INSDC center name

text: public

characteristic: collection date

text: Francisella tularensis subsp. holarctica isolate

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: disseased

characteristic: host health state

text: Lepus europaeus

text: Lepus europaeus


text: public

characteristic: INSDC status

text: Germany

text: disseased

text: Lepus europaeus

characteristic: host scientific name

characteristic: isolate

text: Lepus europaeus

text: Francisella tularensis subsp. holarctica

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: Germany

text: disseased

text: Cyanistes caeruleus

text: Cyanistes caeruleus


text: public

characteristic: SRA accession

text: Germany

text: disseased

text: Homo sapiens

text: Homo sapiens


text: CHRISTIAN MEDICAL COLLEGE

text: public

characteristic: Submitter Id

text: Ceftriaxone resistant Salmonella Typhi outbreak in India 2022-2023

text: India

text: not provided

text: Salmonella enterica subsp. enterica serovar Typhi

text: Blood

characteristic: strain


text: CHRISTIAN MEDICAL COLLEGE

text: public

text: Ceftriaxone resistant Salmonella Typhi outbreak in India 2022-2025

text: India

text: not provided

text: Blood


text: CHRISTIAN MEDICAL COLLEGE

text: public

text: Ceftriaxone resistant Salmonella Typhi outbreak in India 2022-2026

text: India

text: not provided

text: Blood


text: Institute of Medical Virology, Zürich, Switzerland

text: public

text: SIB

characteristic: broker name

text: Universität Zürich, Zürich, Switzerland

characteristic: collecting institution

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-480fba1c/2024

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance not initiated by an outbreak

characteristic: sample capture status


characteristic: ENA first public

characteristic: INSDC center name

text: public

characteristic: collection date

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: diseased

text: Homo sapiens

characteristic: organism


characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

text: public

characteristic: INSDC status

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

unit: DD

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: University Park, PA | Pennsylvania State University

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: dinoflagellate metagenome

text: NOT PROVIDED

text: 4c913676-0c16-427c-a877-5fded3f32bfb-asg-metagenome

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Saprospiraceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Saprospiraceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

text: GTDB-TK (version 2.3.2); GTDB (release 214)

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 78490345-7b67-4689-88ec-8b200b2855af-asg-MAGScoT_cleanbin_000008


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Pyruvatibacter mobilis

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pyruvatibacter mobilis

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 3adb457c-71ca-4a4b-9f79-ee0fe506f758-asg-MAGScoT_cleanbin_000014

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Marinobacter sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Marinobacter sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 07f753d6-e24a-47cc-8380-a08ce4a08d45-asg-MAGScoT_cleanbin_000042


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Roseivirga sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Roseivirga sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: b9399ee6-409d-4f2f-97c4-35303ebf9a91-asg-MAGScoT_cleanbin_000045

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alcanivorax sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alcanivorax sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: f7933abe-fea1-460a-a165-5bc5f2dccd92-asg-MAGScoT_cleanbin_000049


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Balneola sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Balneola sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: c00cc847-36d2-4db5-8e1c-485d8405965e-asg-MAGScoT_cleanbin_000051

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pontimonas sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Pontimonas sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 12e80074-b74c-4e24-8325-b41ed8eebd5c-asg-MAGScoT_cleanbin_000052


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Phycisphaerales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Phycisphaerales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: b69458ac-a229-4eaf-85e8-efd8f79abb29-asg-MAGScoT_cleanbin_000053

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Parvibaculaceae bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Parvibaculaceae bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: d3794bd4-4fd9-4412-b387-69f4bd243651-asg-MAGScoT_cleanbin_000054


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: eca1c78f-3e2d-4e4a-8e0d-8f309df6d527-asg-MAGScoT_cleanbin_000055

characteristic: title

characteristic: tolid


text: No

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

text: University Park, PA | Pennsylvania State University

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 07fb950a-c10b-4c95-a662-7315f048516f-asg-MAGScoT_cleanbin_000058


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Marinobacter sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Marinobacter sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: ba49192d-0cea-4ba2-a2ba-fe1455bed840-asg-MAGScoT_cleanbin_000001

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Winogradskyella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Winogradskyella sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: a25b88cc-6602-4e3b-a4f0-df5fe21f6838-asg-MAGScoT_cleanbin_000002


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Erythrobacter sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Erythrobacter sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: ANI

text: a8d39389-26aa-43b3-9e75-8f06f0a138e1-asg-MAGScoT_cleanbin_000003

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 60483b17-d283-4acc-97ec-cf52142c3eea-asg-MAGScoT_cleanbin_000004


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Roseibium sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Roseibium sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: ANI

text: 1127d181-7526-4efa-96c7-6f98afa871f1-asg-MAGScoT_cleanbin_000005

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Stappia sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Stappia sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: c34293d0-7391-468b-bd1f-a47200a021ac-asg-MAGScoT_cleanbin_000006


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 291f0014-fb19-46b7-b450-4b1e4885b186-asg-MAGScoT_cleanbin_000007

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Croceimicrobium sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Croceimicrobium sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: cd85bb10-1c1a-4fe6-bac5-99d6b2ff1792-asg-MAGScoT_cleanbin_000009


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: f9579e00-a57b-4436-9f3a-59dce60a56f0-asg-MAGScoT_cleanbin_000010

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Pacificispira sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Pacificispira sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 43e0e648-b908-4bb6-a9bc-4fcf75b264f0-asg-MAGScoT_cleanbin_000011


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: University Park, PA | Pennsylvania State University

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: uncultured Pseudohongiella sp.

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: uncultured Pseudohongiella sp.

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: f1516f59-cbef-43ec-8249-02762728c5d8-asg-MAGScoT_cleanbin_000012

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Algihabitans sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Algihabitans sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 17060fee-b3a7-40ed-b3ee-1277560e0bcf-asg-MAGScoT_cleanbin_000013


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Pseudomonadales bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Pseudomonadales bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: f039b650-14e4-42ae-aa71-d0a7a8ef2667-asg-MAGScoT_cleanbin_000015

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Mameliella sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Mameliella sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 50aa27d2-23b6-4078-91a5-a076dcf0ef97-asg-MAGScoT_cleanbin_000016


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Parvibaculaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Parvibaculaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: taxonomic novelty determined using RED

text: bed00a0d-a1ae-49c1-a58a-6bb07fa44e2f-asg-MAGScoT_cleanbin_000017

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Alphaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification fully defined by topology

characteristic: taxonomic identity marker

text: d93f03f6-b113-40c7-9acf-b0fa1a286e37-asg-MAGScoT_cleanbin_000018


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Halieaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Halieaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: 6336bccc-a9f8-448e-bb04-7863cc1152d2-asg-MAGScoT_cleanbin_000019

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Marinobacter salsuginis

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Marinobacter salsuginis

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 71dd6e2a-b3de-4e48-9d6f-a5e0d0dd3871-asg-MAGScoT_cleanbin_000020


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Alphaproteobacteria bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Alphaproteobacteria bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: taxonomic novelty determined using RED

text: decfa510-b18c-423f-b658-ad5aecb268dc-asg-MAGScoT_cleanbin_000021

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Marinicaulis sp.

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Marinicaulis sp.

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

text: taxonomic classification defined by topology and ANI

characteristic: taxonomic identity marker

text: 543af3e8-7e1a-486d-b9b4-ebe072642696-asg-MAGScoT_cleanbin_000022


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: University Park, PA | Pennsylvania State University

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Paracoccaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Paracoccaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 82196ed5-2ab0-4fe7-92e1-9b6bf1dc6e5d-asg-MAGScoT_cleanbin_000023

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

text: Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Hyphomicrobiales bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Hyphomicrobiales bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: e75b2482-386e-49a5-88ac-96db8616c2ba-asg-MAGScoT_cleanbin_000024


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

text: MAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); MaxBin (version 2.7)

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Cyclobacteriaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Cyclobacteriaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: 4f14cf30-a4a4-4afd-b09a-0799c42c363f-asg-MAGScoT_cleanbin_000025

characteristic: title

characteristic: tolid


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

text: aquatic biome

text: MARY ALICE COFFROTH

text: University at Buffalo

characteristic: collecting institution

characteristic: collection date

characteristic: completeness score

text: checkM (version 1.2.1); checkM_DB (release 2015-01-16)

characteristic: completeness software

characteristic: contamination score

text: dinoflagellate culture

text: USA

characteristic: geographic location (country and/or sea)

text: not collected

text: not collected

characteristic: geographic location (region and locality)

text: Unknown

text: vegetative cell

text: Breviolum psygmophilum

text: not applicable

characteristic: host sex

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

characteristic: investigation type

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

text: dinoflagellate metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: Gammaproteobacteria bacterium

characteristic: organism

text: WHOLE ORGANISM

text: ASG

text: Gammaproteobacteria bacterium

text: Pacbio Sequel II

characteristic: sequencing method

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

characteristic: tRNA extraction software

characteristic: taxonomic classification

characteristic: taxonomic identity marker

text: 350a5f61-b8f1-454f-ad59-faebc42396dc-asg-MAGScoT_cleanbin_000026


text: Yes

characteristic: 16S recovered

text: PROKKA (version 1.14.5)

characteristic: 16S recovery software

characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: University of Derby

characteristic: GAL

text: NOT PROVIDED

text: Tree of Life Programme

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: Minimap2 (version 2.24-r1122)

characteristic: MAG coverage software

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

text: metaMDBG

characteristic: assembly software

text: coverage; graph

characteristic: binning parameters

characteristic: binning software

text: aquatic biome

characteristic: broad-scale environmental context

text: MARY ALICE COFFROTH

text: University at Buffalo

text: dinoflagellate culture

characteristic: environmental medium

text: USA

text: not collected

characteristic: geographic location (latitude)

text: not collected

characteristic: geographic location (longitude)

text: Unknown

characteristic: habitat

text: vegetative cell

characteristic: host life stage

text: Breviolum psygmophilum

characteristic: host scientific name

text: not applicable

characteristic: host taxid

text: JOHN PARKINSON

text: UNIVERSITY OF SOUTH FLORIDA

text: metagenome-assembled genome

text: Dinoflagellate: Breviolum psygmophilum

text: marine biome

characteristic: local environmental context

text: dinoflagellate metagenome

text: Balneolaceae bacterium

text: WHOLE ORGANISM

characteristic: organism part

text: ASG

characteristic: project name

characteristic: sample derived from

text: Balneolaceae bacterium

text: Pacbio Sequel II

text: NOT PROVIDED

text: PROKKA (version 1.14.5)

text: GTDB-TK (version 2.3.2); GTDB (release 214)

text: ANI

text: 74665a0e-9b19-445b-894a-910980f5f7f2-asg-MAGScoT_cleanbin_000027

characteristic: title

characteristic: tolid