text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 2, sample 6


status: PUBLIC

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRDGE

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:UNIVERSITY OF CAMBRDGE

characteristic: Submitter Id

text: pig

characteristic: common name

text: Traditional metagenomics sequencing on pig faecal sample from farm 2 (high antimicrobial usage farm)

characteristic: description

text: Sus scrofa

characteristic: organism

text: Sus scrofa

text: Metagenomics library, farm 2, sample 7

characteristic: title


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 2, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 2, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 2, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 3 (high antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 3, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 4 (high antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 7


text: UNIVERSITY OF CAMBRDGE

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text: pig

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text: Metagenomics library, farm 4, sample 8


text: UNIVERSITY OF CAMBRDGE

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text: pig

text: Sus scrofa

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text: Metagenomics library, farm 4, sample 9


text: UNIVERSITY OF CAMBRDGE

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text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 4, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 5 (high antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

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text: Metagenomics library, farm 5, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 8


text: UNIVERSITY OF CAMBRDGE

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text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 5, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 6 (low antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 6, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 7 (low antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 7, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 8 (low antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 8, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 9 (low antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

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text: Metagenomics library, farm 9, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 9, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Traditional metagenomics sequencing on pig faecal sample from farm 10 (low antimicrobial usage farm)

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 1


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 2


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 3


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 4


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 6


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 7


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 8


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 9


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Metagenomics library, farm 10, sample 10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 1

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 1, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 1, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 2

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 2, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 2, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 3

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 3, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 3, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 4

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 4, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

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text: Hi-C Metagenomics library, farm 4, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 5

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 5, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 5, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 6

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 6, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 6, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 7

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 7, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

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text: Hi-C Metagenomics library, farm 7, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 8

text: Sus scrofa

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text: Hi-C Metagenomics library, farm 8, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

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text: Hi-C Metagenomics library, farm 8, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 9

text: Sus scrofa

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text: Hi-C Metagenomics library, farm 9, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

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text: Hi-C Metagenomics library, farm 9, sample 6-10


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Pooled (5 samples) Hi-C metagenomics sequencing on pig faecal sample from farm 10

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 10, sample 1-5


text: UNIVERSITY OF CAMBRDGE

text: public

text: pig

text: Sus scrofa

text: Sus scrofa

text: Hi-C Metagenomics library, farm 10, sample 6-10


text: public

tag: Namespace:UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

characteristic: collection date

text: Day 0 SF28073 challenged with phi47, culture 1

text: USA

characteristic: geographic location (country and/or sea)

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characteristic: isolation source

text: Enterococcus faecalis

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text: SF28073 ERC000028

characteristic: strain checklist_accession

text: Day 0 phi47 culture 1


characteristic: ENA-CHECKLIST

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text: Day 0 SF28073 challenged with phi47, culture 2

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text: Day 0 phi47 culture 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

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text: Day 0 SF28073 challenged with phi47, culture 3

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characteristic: INSDC center name

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text: Day 0 SF28073 challenged with phi47, culture 4

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characteristic: INSDC last update

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characteristic: INSDC status

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text: Day 0 phi47 culture 5


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characteristic: SRA accession

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text: Day 1 SF28073 challenged with phi47 whole community reads, culture 1

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text: Day 1 phi47 culture 1


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text: Day 1 SF28073 challenged with phi47 whole community reads, culture 2

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text: Day 1 phi47 culture 2


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text: Day 1 SF28073 challenged with phi47 whole community reads, culture 3

text: USA

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text: Day 1 phi47 culture 3


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text: Day 1 SF28073 challenged with phi47 whole community reads, culture 4

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characteristic: title


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characteristic: collection date

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text: Day 3 SF28073 challenged with phi47 whole community reads, culture 1

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text: Day 3 phi47 culture 1


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text: Day 3 SF28073 challenged with phi47 whole community reads, culture 2

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text: Day 3 phi47 culture 2


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text: Day 3 SF28073 challenged with phi47 whole community reads, culture 3

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characteristic: ENA-CHECKLIST

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characteristic: ENA-FIRST-PUBLIC

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text: Day 3 SF28073 challenged with phi47 whole community reads, culture 5

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characteristic: ENA-LAST-UPDATE

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text: Day 7 SF28073 challenged with phi47 whole community reads, culture 1

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characteristic: INSDC first public

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characteristic: INSDC last update

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text: Day 7 SF28073 challenged with phi47 whole community reads, culture 5

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characteristic: INSDC status

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text: Day 14 phi47 culture 1


text: public

characteristic: SRA accession

text: Day 14 SF28073 challenged with phi47 whole community reads, culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 culture 2


text: public

characteristic: Submitter Id

text: Day 14 SF28073 challenged with phi47 whole community reads, culture 3

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 culture 3


text: public

text: Day 14 SF28073 challenged with phi47 whole community reads, culture 4

characteristic: description

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 culture 4


text: public

text: Day 14 SF28073 challenged with phi47 whole community reads, culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 culture 5


text: public

text: Day 1 SF28073 challenged with VPE25 whole community reads, culture 1

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 VPE25 culture 1

characteristic: title


text: public

characteristic: collection date

text: Day 1 SF28073 challenged with VPE25 whole community reads, culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 VPE25 culture 2


text: public

text: Day 1 SF28073 challenged with VPE25 whole community reads, culture 4

text: USA

characteristic: geographic location (country and/or sea)

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 VPE25 culture 4


text: public

text: Day 1 SF28073 challenged with VPE25 whole community reads, culture 5

text: USA

text: Laboratory

characteristic: isolation source

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 VPE25 culture 5


text: public

text: Day 1 SF28073 challenged with VPE25 whole community reads, culture 6

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

characteristic: strain checklist_accession

text: Day 1 VPE25 culture 6


characteristic: ENA-CHECKLIST

text: public

text: Day 3 SF28073 challenged with VPE25 whole community reads, culture 1

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 VPE25 culture 1


characteristic: ENA-FIRST-PUBLIC

text: public

text: Day 3 SF28073 challenged with VPE25 whole community reads, culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 VPE25 culture 2


characteristic: ENA-LAST-UPDATE

text: public

text: Day 3 SF28073 challenged with VPE25 whole community reads, culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 VPE25 culture 4


characteristic: External Id

text: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

text: public

text: Day 3 SF28073 challenged with VPE25 whole community reads, culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 VPE25 culture 5


characteristic: INSDC center name

text: public

text: Day 3 SF28073 challenged with VPE25 whole community reads, culture 6

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 VPE25 culture 6


characteristic: INSDC first public

text: public

text: Day 7 SF28073 challenged with VPE25 whole community reads, culture 1

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 VPE25 culture 1


characteristic: INSDC last update

text: public

text: Day 7 SF28073 challenged with VPE25 whole community reads, culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 VPE25 culture 2


text: public

characteristic: INSDC status

text: Day 7 SF28073 challenged with VPE25 whole community reads, culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 VPE25 culture 4


text: public

characteristic: SRA accession

text: Day 7 SF28073 challenged with VPE25 whole community reads, culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 VPE25 culture 5


text: public

characteristic: Submitter Id

text: Day 7 SF28073 challenged with VPE25 whole community reads, culture 6

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 VPE25 culture 6


text: public

text: Day 14 SF28073 challenged with VPE25 whole community reads, culture 1

characteristic: description

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 VPE25 culture 1


text: public

text: Day 14 SF28073 challenged with VPE25 whole community reads, culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 VPE25 culture 2


text: public

text: Day 14 SF28073 challenged with VPE25 whole community reads, culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 VPE25 culture 4

characteristic: title


text: public

characteristic: collection date

text: Day 14 SF28073 challenged with VPE25 whole community reads, culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 VPE25 culture 5


text: public

text: Day 14 SF28073 challenged with VPE25 whole community reads, culture 6

text: USA

characteristic: geographic location (country and/or sea)

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 VPE25 culture 6


text: public

text: Day 1 SF28073 bacteria only control, matched with phi47 culture 1

text: USA

text: Laboratory

characteristic: isolation source

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 phi47 bacteria only culture 1


text: public

text: Day 1 SF28073 bacteria only control, matched with phi47 culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

characteristic: strain checklist_accession

text: Day 1 phi47 bacteria only culture 2


characteristic: ENA-CHECKLIST

text: public

text: Day 1 SF28073 bacteria only control, matched with phi47 culture 3

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 phi47 bacteria only culture 3


characteristic: ENA-FIRST-PUBLIC

text: public

text: Day 1 SF28073 bacteria only control, matched with phi47 culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 phi47 bacteria only culture 4


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

text: public

text: Day 1 SF28073 bacteria only control, matched with phi47 culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 phi47 bacteria only culture 5


characteristic: External Id

text: public

text: Day 3 SF28073 bacteria only control, matched with phi47 culture 1

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 phi47 bacteria only culture 1


characteristic: INSDC center name

text: public

text: Day 3 SF28073 bacteria only control, matched with phi47 culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 phi47 bacteria only culture 2


characteristic: INSDC first public

text: public

text: Day 3 SF28073 bacteria only control, matched with phi47 culture 3

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 phi47 bacteria only culture 3


characteristic: INSDC last update

text: public

text: Day 3 SF28073 bacteria only control, matched with phi47 culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 phi47 bacteria only culture 4


text: public

characteristic: INSDC status

text: Day 3 SF28073 bacteria only control, matched with phi47 culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 phi47 bacteria only culture 5


text: public

characteristic: SRA accession

text: Day 7 SF28073 bacteria only control, matched with phi47 culture 1

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 phi47 bacteria only culture 1


text: public

characteristic: Submitter Id

text: Day 7 SF28073 bacteria only control, matched with phi47 culture 2

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 phi47 bacteria only culture 2


text: public

text: Day 7 SF28073 bacteria only control, matched with phi47 culture 3

characteristic: description

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 phi47 bacteria only culture 3


text: public

text: Day 7 SF28073 bacteria only control, matched with phi47 culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

characteristic: organism

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 phi47 bacteria only culture 4


text: public

text: Day 7 SF28073 bacteria only control, matched with phi47 culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 phi47 bacteria only culture 5

characteristic: title


text: public

characteristic: collection date

text: Day 14 SF28073 bacteria only control, matched with phi47 culture 1

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 bacteria only culture 1


text: public

text: Day 14 SF28073 bacteria only control, matched with phi47 culture 2

text: USA

characteristic: geographic location (country and/or sea)

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 bacteria only culture 2


text: public

text: Day 14 SF28073 bacteria only control, matched with phi47 culture 3

text: USA

text: Laboratory

characteristic: isolation source

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 bacteria only culture 3


text: public

text: Day 14 SF28073 bacteria only control, matched with phi47 culture 4

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

characteristic: strain checklist_accession

text: Day 14 phi47 bacteria only culture 4


characteristic: ENA-CHECKLIST

text: public

text: Day 14 SF28073 bacteria only control, matched with phi47 culture 5

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 phi47 bacteria only culture 5


characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLORADO DENVER, SCHOOL OF MEDICINE

text: public

text: Day 1 SF28073 bacteria only control, matched with VPE25

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 1 VPE25 bacteria only


characteristic: ENA-LAST-UPDATE

text: public

text: Day 3 SF28073 bacteria only control, matched with VPE25

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 3 VPE25 bacteria only


characteristic: External Id

text: public

text: Day 7 SF28073 bacteria only control, matched with VPE25

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 7 VPE25 bacteria only


characteristic: INSDC center name

text: public

text: Day 14 SF28073 bacteria only control, matched with VPE25

text: USA

text: Laboratory

text: Enterococcus faecalis

text: Enterococcus faecalis

text: SF28073 ERC000028

text: Day 14 VPE25 bacteria only


IIR myxospore for genome

text: OREGON STATE UNIVERSITY

characteristic: INSDC first public

text: public

text: IIR myxospore for genome

tag: Namespace:OREGON STATE UNIVERSITY

text: Oregon State University, 1500 SW Jefferson Way Corvallis, OR 97331

characteristic: collecting institution

text: Stephen D. Atkinson

characteristic: collector name

text: myxospores from ascites

text: myxospores

characteristic: dev stage

text: clinical signs, microscopy ERC000039

characteristic: diagnostic method checklist_accession

text: IIR

characteristic: genotype

text: USA

text: Rainbow trout

characteristic: host common name

text: Oncorhynchus mykiss

characteristic: host scientific name

characteristic: isolate

text: Ceratonova shasta

text: Ceratonova shasta

text: Ceratonova shasta IIR myxospores for genome


text: VIB-Ugent VIB-PSB

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:VIB-Ugent VIB-PSB

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cultivar

text: Protocols: Samples were taken from 3 parental lines and 2 hybrid crosses. The parents: inbred lines B104 and Mo17, and the GA20OX transgenic line in B104 background. The hybrid crosses: B104 x Mo17, GA20OX x Mo17. The first 0.5 cm (dividing cells) of the most basal part of leaf four of at 2 days after leaf appearance was sampled from the parental lines and hybrid crosses. For each genotype, there are 3 biological replicates, each pool consisting of proliferative tissue of three plants. After harvesting, samples were directly frozen in liquid nitrogen. To sample the most basal half centimeter of the fourth leaf, the older leaves that surround the growing leaf should be removed. Special care should be taken not to damage the basal part of the growing leaf because this is where the leaf basal meristem is located. Growth chambers have a controlled relative humidity (55%), temperature (24°C), and light intensity (170 mmol m-2 s-1 photosynthetically active radiation at plant level) in a 16-h/8-h day/night rhythm provided by a combination of high-pressure sodium vapour (RNP-T/LR/400W/S/230/E40; Radium) and metal halide lamps with quartz burners (HRI-BT/400W/D230/E40; Radium). Total RNA was isolated from basal half cm of growing leaf 4 with the guanidinium thiocyanate-phenol-chloroform extraction method using TRI-reagent (Sigma-Aldrich). RNA concentration and purity were determined spectrophotometrically using the Nanodrop ND-1000 (Nanodrop Technologies) and RNA integrity was assessed using a Bioanalyser 2100 (Agilent). Per sample, 500 ng of total RNA was used as input. Using the Illumina TruSeq® Stranded mRNA Sample Prep Kit (protocol 15031047 Rev E October 2013) poly-A containing mRNA molecules were purified from the total RNA input using poly-T oligo-attached magnetic beads. In a reverse transcription reaction using random primers, RNA was converted into first strand cDNA and subsequently converted into double-stranded cDNA in a second strand cDNA synthesis reaction. The cDNA fragments were extended with a single ‘A’ base to the 3’ ends of the blunt-ended cDNA fragments after which multiple indexing adapters were ligated introducing different barcodes for each sample. Finally, enrichment PCR was carried out to enrich those DNA fragments that have adapter molecules on both ends and to amplify the amount of DNA in the library. For the sequence run, libraries were equimolarly pooled and sequenced using a high 300 cycles (PE- 2 x 150 bp) NextSeq kit on an Illumina NextSeq 500 instrument.

characteristic: description

text: LP.04 four leaves visible stage

characteristic: developmental stage

text: GA20ox overexpression

text: growth chamber study

characteristic: growth condition

text: Zea mays

characteristic: organism

text: Zea mays

text: leaf

characteristic: organism part

text: leaf 4, cm 0 - 0.5 measured from the base of the leaf. Division zone.

characteristic: sampling site

text: 2 days after leaf 4 appearance

characteristic: sampling time point

text: Zea mays

characteristic: title

text: well watered

characteristic: treatment


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: VIB-Ugent VIB-PSB

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: ArrayExpress

text: B104 x Mo17

text: LP.04 four leaves visible stage

text: GA20ox overexpression

characteristic: genotype

text: growth chamber study

text: Zea mays

text: Zea mays

text: leaf

text: 2 days after leaf 4 appearance

text: Zea mays

text: well watered


text: VIB-Ugent VIB-PSB

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cultivar

text: LP.04 four leaves visible stage

text: wild type genotype

text: growth chamber study

text: Zea mays

text: Zea mays

text: leaf

text: 2 days after leaf 4 appearance

text: Zea mays

text: well watered


text: VIB-Ugent VIB-PSB

text: public

text: ArrayExpress

text: B104 x Mo17

characteristic: description

text: LP.04 four leaves visible stage

characteristic: developmental stage

text: wild type genotype

text: growth chamber study

characteristic: growth condition

text: Zea mays

characteristic: organism

text: Zea mays

text: leaf

characteristic: organism part

characteristic: sampling site

text: 2 days after leaf 4 appearance

text: Zea mays

text: well watered


E-MTAB-11101:Sample 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11101:Sample 1

tag: Namespace:Friedrich Miescher Institute for Biomedical Research

unit: year

characteristic: age

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: A549 cells were transiently transfected with GFP-tagged DARPin F10, then GFP positive cells were sorted by FACS and total RNA was extracted 3 days after transfection. DARPin F10 and WT A549 cells were washed by PBS and collected by cell-lifter. Cells were spin down in EP-Tube. mRNA was extracted by RNeasy Mini prep kit. 125ng of total RNA was processed using the Illumina TruSeq Stranded mRNA kit (cat. 20020595), according to the manufacturer protocol, with 14 cycles of final PCR amplification.

text: adult

text: lung carcinoma

characteristic: disease

text: European

characteristic: ethnic group

text: lentivirus transfected with pcDNA3.1-GFP-DARPin F10

characteristic: genetic modification

text: DARPin F10

text: Homo sapiens

text: Homo sapiens

text: lung

text: transient expression of DARPin F10

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 1

characteristic: title


E-MTAB-11101:Sample 2

characteristic: External Id

text: Friedrich Miescher Institute for Biomedical Research

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-11101:Sample 2

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: lung carcinoma

text: European

text: DARPin F10

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: transient expression of DARPin F10

text: Homo sapiens

text: male

text: Sample 2


E-MTAB-11101:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-11101:Sample 3

characteristic: age

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: lung carcinoma

characteristic: disease

text: European

text: DARPin F10

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: transient expression of DARPin F10

text: Homo sapiens

text: male

text: Sample 3


E-MTAB-11101:Sample 4

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-11101:Sample 4

text: ArrayExpress

text: epithelial cell

text: human

text: adult

text: lung carcinoma

text: European

characteristic: ethnic group

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: wild type

characteristic: phenotype

text: Homo sapiens

text: male

characteristic: sex

text: Sample 4

characteristic: title


E-MTAB-11101:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: SRA accession

text: E-MTAB-11101:Sample 5

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: epithelial cell

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: lung carcinoma

text: European

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: lung

text: wild type

text: Homo sapiens

text: male

text: Sample 5


E-MTAB-11101:Sample 6

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-11101:Sample 6

characteristic: age

text: ArrayExpress

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: adult

text: lung carcinoma

characteristic: disease

text: European

text: wild type genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: lung

characteristic: organism part

text: wild type

text: Homo sapiens

text: male

text: Sample 6


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Tartu, Estonia

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

tag: Namespace:University of Tartu, Estonia

text: University of Tartu KoroGenoEST3 consortium, Estonia

characteristic: collecting institution

characteristic: collection date

text: Aare Abroi, Radko Avi, Taavi Päll, Heiki Niglas , Merit Pauskar, Arina Shablinskaja, Eveli Kallas, Andrio Lahesaare, Kai Truusalu, Dagmar Hoidmets, Olga Sadikova, Kaspar Ratnik, Hanna Sepp, Liidia Dotsenko, Jevgenia Epštein, Heleene Suija, Katrin Kaarna, Lili Milani, Mait Metspalu, Ott Eric Oopkaup, Ivar Koppel, Erik Jaaniso, Ivan Kuzmin, Uku Raudvere, Tuuli Reisberg, Hedi Peterson, Ulvi Gerst Talas, Paul Naaber, Mari-Anne Härma, Irja Lutsar, Kristi Huik

characteristic: collector name

text: Nasopharyngeal/oropharyngeal swab from Estonian Covid-19 patient

text: Estonia

characteristic: geographic location (country and/or sea)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

characteristic: host sex

text: host subject id

characteristic: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance in response to outbreak

characteristic: sample capture status

text: PCR tiled amplicon WGS of SARS-Cov-2, pre-selected subset from active surveillance

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: description

text: Estonia

text: human

text: diseased

text: Homo sapiens

text: male

text: host subject id

characteristic: organism


text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: diseased

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: female

characteristic: host sex

text: host subject id

characteristic: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

text: Estonia

text: human

text: not provided

text: Homo sapiens

text: female

text: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status

characteristic: title


text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

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text: ena-upload-cli v0.3.1 @ Galaxy

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text: UNIVERSITY OF PADOVA

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text: UNIVERSITY OF PADOVA

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characteristic: INSDC status

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text: UNIVERSITY OF PADOVA

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text: University of Tartu, Estonia

text: public

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: collecting institution

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text: Estonia

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text: human

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text: diseased

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text: host subject id

characteristic: isolate

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characteristic: sample capture status


characteristic: ENA-CHECKLIST

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text: University of Tartu, Estonia

text: public

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text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

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text: Estonia

text: human

text: diseased

text: Homo sapiens

characteristic: host scientific name

text: female

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text: host subject id

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characteristic: organism

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text: University of Tartu, Estonia

characteristic: INSDC center name

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text: public

characteristic: INSDC status

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: collecting institution

characteristic: collection date

characteristic: collector name

text: Estonia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: host age

text: human

characteristic: host common name

text: not provided

text: Homo sapiens

text: female

text: host subject id


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: University of Tartu, Estonia

text: public

characteristic: SRA accession

text: ena-upload-cli v0.3.1 @ Galaxy

characteristic: Submitter Id

characteristic: description

text: Estonia

text: human

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: male

text: host subject id

characteristic: isolate

characteristic: isolation source non-host-associated

characteristic: sample capture status


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: Samples prepared at Berkshire and Surrey Pathology Services Lighthouse Laboratory by Berkshire and Surrey Pathology Services Lighthouse Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Milton Keynes

text: United Kingdom

text: Wales

text: Human

characteristic: host scientific name

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: Berkshire and Surrey Pathology Services Lighthouse Laboratory

characteristic: collecting institution

text: United Kingdom

text: England

text: Human


text: SC

text: public

text: SC

text: Rosalind Franklin Laboratory

characteristic: collection date

text: Samples prepared at Rosalind Franklin Laboratory by Donald Fraser, Suki Lee, Rob Howes, The Rosalind Franklin Laboratory and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

characteristic: geographic location (region and locality)

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Wales

text: Human

characteristic: title


characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Scotland

text: Human

characteristic: host scientific name

characteristic: sample capture status


text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: Lighthouse Laboratory Plymouth

characteristic: collecting institution

text: Samples prepared at Lighthouse Laboratory Plymouth by Lighthouse Laboratory Plymouth and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Wales

text: Human


text: SC

text: public

text: SC

text: Health Services Laboratories

characteristic: collection date

text: Samples prepared at Health Services Laboratories by Health Services Laboratories and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

text: Lighthouse Laboratory Plymouth

text: United Kingdom

text: England

text: Human

characteristic: title


characteristic: External Id

text: SC

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Health Services Laboratories

characteristic: description

text: United Kingdom

text: Scotland

text: Human


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

tag: Namespace:OH-PACT consortium

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specific multiplex PCR for Illumina sequencing was performed. Raw data was demultiplexed and mapped to the SARS-CoV-2 Wuhan reference genome in Geneious.

text: Netherlands

text: Noord-Brabant

text: Mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-50-21/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

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characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: Mink

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-50-22/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Noord-Brabant

text: Mink

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text: not collected

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text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-50-24/2020

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: Mink

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-50-26/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

text: active surveillance in response to outbreak

characteristic: sample capture status

text: OH-PACT consortium sample sequencing


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-53-17/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

text: Mink

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-53-19/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-53-20/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

text: Mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-53-22/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

characteristic: description

text: Netherlands

text: Limburg

characteristic: geographic location (region and locality)

text: Mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-53-32/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

text: Human coronavirus 2019

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Limburg

text: Mink

text: not collected

text: Neovison vison

text: not provided

text: not provided

text: hCoV-19/mink/Netherlands/NB-EMC-53-34/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status

text: OH-PACT consortium sample sequencing


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Milton Keynes

text: Samples prepared at Lighthouse Lab in Milton Keynes by The Lighthouse Lab in Milton Keynes and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: organism

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: Samples prepared at Lighthouse Lab in Alderley Park by Jacquelyn Wynn, Mairead Hyland, The Lighthouse Lab in Alderley Park and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: England

text: Human

characteristic: host scientific name


text: SC

text: public

characteristic: INSDC status

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Wales

text: Human


text: SC

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: SC

text: Lighthouse Lab in Glasgow

text: Samples prepared at Lighthouse Lab in Glasgow by Harper VanSteenhouse, Yumi Kasai, David Gray, Carol Clugston, Anna Dominiczak and Alex Alderton, Roberto Amato, Jeffrey Barrett, Sonia Goncalves, Ewan Harrison, David K. Jackson, Ian Johnston, Dominic Kwiatkowski, Cordelia Langford, John Sillitoe on behalf of the Wellcome Sanger Institute COVID-19 Surveillance Team (https://www.sanger.ac.uk/covid-team)

text: United Kingdom

text: Scotland

text: Human

characteristic: sample capture status


text: SC

text: public

characteristic: Submitter Id

text: SC

text: Lighthouse Lab in Glasgow

characteristic: description

text: United Kingdom

text: England

characteristic: geographic location (region and locality)

text: Human

characteristic: organism


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: SC

text: public

text: SC

text: Lighthouse Lab in Alderley Park

text: United Kingdom

text: Wales

text: Human

characteristic: title


characteristic: External Id

text: SC

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: SC

text: Lighthouse Lab in Glasgow

text: United Kingdom

text: Wales

text: Human

characteristic: host scientific name


text: SC

text: public

text: SC

characteristic: broker name

text: Lighthouse Lab in Milton Keynes

characteristic: collecting institution

characteristic: collection date

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: Scotland

text: Human


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

text: Noord-Brabant

text: mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-2-2/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-2-3/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: mink

characteristic: host common name

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/mink/Netherlands/NB-EMC-2-6/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: OH-PACT consortium

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

text: Neovison vison

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-2-8/2020

characteristic: isolate

text: not collected

characteristic: isolation source host associated

characteristic: sample capture status

text: OH-PACT consortium sample sequencing


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-2-13/2020

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

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text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

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text: restricted access

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text: hCoV-19/mink/Netherlands/NB-EMC-2-14/2020

text: not collected

text: active surveillance in response to outbreak

text: OH-PACT consortium sample sequencing


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-2-19/2020

characteristic: isolate

text: not collected

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characteristic: sample capture status

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

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text: not provided

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text: Human coronavirus 2019

characteristic: description

text: Netherlands

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characteristic: geographic location (region and locality)

text: mink

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text: Neovison vison

characteristic: host scientific name

text: not provided

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text: hCov-19/mink/Netherlands/NB-EMC-1-1/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: GISAID Accession ID

text: OH-PACT consortium

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

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text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

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text: not collected

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text: Neovison vison

text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-1-2/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: OH-PACT consortium

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

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text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

text: Neovison vison

text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-1-3/2020

characteristic: isolate

text: not collected

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text: OH-PACT consortium sample sequencing


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

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text: public

characteristic: SRA accession

text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

characteristic: collecting institution

characteristic: collection date

text: OH-PACT consortium

characteristic: collector name

text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: mink

characteristic: host common name

text: not collected

text: Neovison vison

characteristic: host scientific name

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-1-4/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: OH-PACT consortium

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text: public

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

characteristic: broker name

text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

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text: Neovison vison

text: not provided

characteristic: host sex

text: restricted access

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text: hCoV-19/mink/Netherlands/NB-EMC-1-5/2020

text: not collected

text: OH-PACT consortium sample sequencing


characteristic: GISAID Accession ID

text: OH-PACT consortium

characteristic: INSDC center name

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text: public

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

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text: OH-PACT consortium

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text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: mink

characteristic: host common name

text: not collected

text: Neovison vison

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-1-6/2020

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text: not collected

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text: OH-PACT consortium sample sequencing


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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

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text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

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text: Neovison vison

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text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-1-7/2020

text: not collected

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characteristic: collecting institution

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text: OH-PACT consortium

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text: A SARS-CoV-2 specfic multiplex PCR for Nanopore sequencing was performed, similar to amplicon-based approaches as previously described. In short, primers for 86 overlapping amplicons spanning the entire genome were designed using primal. The amplicon length was set to 500bp with 75bp overlap between the different amplicons. The libraries were generated using the native barcode kits from Nanopore (EXP-NBD104 and EXP-NBD114 and SQK-LSK109) and sequenced on a R9.4 flow cell multiplexing up to 24 samples per sequence run. Raw data was demultiplexed, amplicon primers were trimmed and human data was removed by mapping against the human reference genome.

text: Netherlands

characteristic: geographic location (country and/or sea)

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text: restricted access

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text: hCoV-19/mink/Netherlands/NB-EMC-1-8/2020

text: not collected

text: OH-PACT consortium sample sequencing


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text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

text: Neovison vison

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-1-9/2020

characteristic: isolate

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text: OH-PACT consortium sample sequencing


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text: not provided

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text: OH-PACT consortium

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text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

text: Noord-Brabant

text: mink

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text: not collected

text: Neovison vison

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text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-1-10/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

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text: not provided

text: OH-PACT consortium

text: Human coronavirus 2019

characteristic: description

text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

characteristic: host health state

text: Neovison vison

text: not provided

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text: restricted access

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text: hCoV-19/mink/Netherlands/NB-EMC-1-11/2020

text: not collected

text: OH-PACT consortium sample sequencing


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text: OH-PACT consortium

characteristic: INSDC center name

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text: Netherlands

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text: Noord-Brabant

text: mink

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text: not collected

text: Neovison vison

text: not provided

text: restricted access

text: hCoV-19/mink/Netherlands/NB-EMC-1-12/2020

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text: OH-PACT consortium sample sequencing


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text: not provided

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text: Human coronavirus 2019

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text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

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text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-1-13/2020

text: not collected

text: Severe acute respiratory syndrome coronavirus 2

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characteristic: title


characteristic: GISAID Accession ID

text: OH-PACT consortium

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

text: not provided

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text: Human coronavirus 2019

characteristic: common name

text: Netherlands

characteristic: geographic location (country and/or sea)

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text: not collected

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text: not provided

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text: restricted access

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text: hCoV-19/mink/Netherlands/NB-EMC-1-14/2020

text: not collected

text: active surveillance in response to outbreak

text: OH-PACT consortium sample sequencing


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text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

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text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-1-16/2020

characteristic: isolate

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text: OH-PACT consortium sample sequencing


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characteristic: INSDC center name

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text: not provided

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text: Netherlands

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text: not collected

text: Neovison vison

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text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-1-17/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

characteristic: title


characteristic: ENA-CHECKLIST

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text: ERASMUS MC, UNIVERISTY MEDICAL CENTER

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text: not provided

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text: Human coronavirus 2019

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text: Netherlands

text: Noord-Brabant

characteristic: geographic location (region and locality)

text: mink

text: not collected

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text: Neovison vison

text: not provided

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text: restricted access

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text: hCoV-19/mink/Netherlands/NB-EMC-1-18/2020

text: not collected

text: OH-PACT consortium sample sequencing


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text: OH-PACT consortium

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text: not provided

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text: not collected

text: Neovison vison

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text: hCoV-19/mink/Netherlands/NB-EMC-4-2/2020

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text: OH-PACT consortium sample sequencing


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characteristic: geographic location (region and locality)

text: mink

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text: not provided

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text: hCoV-19/mink/Netherlands/NB-EMC-3-2/2020

text: not collected

characteristic: organism

text: OH-PACT consortium sample sequencing

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text: not provided

characteristic: collecting institution

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text: OH-PACT consortium

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text: Human coronavirus 2019

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text: Netherlands

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text: not collected

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text: hCoV-19/mink/Netherlands/NB-EMC-3-3/2020

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text: OH-PACT consortium sample sequencing


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characteristic: geographic location (region and locality)

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text: hCoV-19/mink/Netherlands/NB-EMC-3-4/2020

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characteristic: sample capture status

text: OH-PACT consortium sample sequencing