E-MTAB-10743:Sample 3

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10743:Sample 3

characteristic: age

text: ArrayExpress

text: myeloid cell

text: house mouse

text: adult

characteristic: developmental stage

text: high fat diet

text: atherosclerosis

text: Apolipoprotein E knockout

characteristic: genotype

text: high fat diet for 16 weeks

text: pool of 9 mice

text: Mus musculus

characteristic: organism

text: Mus musculus

text: aorta

characteristic: organism part

text: Mus musculus

text: female

text: Sample 3

characteristic: title


E-MTAB-10743:Sample 2

status: PUBLIC

tag: attribute

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-10743:Sample 2

tag: Namespace:Kennedy Institute of Rheumatology University of Oxford

characteristic: Submitter Id

unit: week

text: ArrayExpress

characteristic: broker name

text: myeloid cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Single cells from aortas were digested in 5% FBS/RPMI containing 450 U/ml collagenase I, 125 U/ml collagenase XI 60 U/ml hyaluronidase and 60 U/ml DNase I for 50 minutes at 37°C. Cells were retrieved by passing tissue pieces through a 70 um cell strainer and were pooled from 9 mice in each experiment. Unspecific binding was blocked by incubating cells with murine anti-CD16/32 antibody. Cells were stained with antibodies against CD45, CD11b and CD64 and LIVE/DEAD viability dye. Live CD45+ CD11b+ (two experiments) or live CD45+ CD11b+ CD64low-high (one experiment) cells were sorted for sequencing. Library generation for 10x Genomics v2 chemistry was performed following the Chromium Single Cell 3ʹ Reagents Kits (User Guide: CG00052). Quantification of cDNA and library construction was performed using a Qubit dsDNA HS Assay Kit (ThermoFisher Scientific) and high-sensitivity DNA tapestation (Agilent).

characteristic: description

text: adult

text: high fat diet

characteristic: diet

text: atherosclerosis

characteristic: disease

text: Apolipoprotein E knockout

text: high fat diet for 12 weeks

characteristic: growth condition

characteristic: immunophenotype

text: pool of 9 mice

characteristic: individual

text: Mus musculus

text: Mus musculus

text: aorta

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 2


characteristic: ENA-CHECKLIST

text: CING

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: human

text: miRNA RNA-Seq DM1 Sample Patient

text: Homo sapiens

characteristic: organism

text: Homo sapiens

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: CING

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: human

text: miRNA RNA-Seq DM1 Sample Control

text: Homo sapiens

text: Homo sapiens


E-MTAB-10746:Sample 1

text: Kennedy Institute of Rheumatology University of Oxford

text: public

text: E-MTAB-10746:Sample 1

characteristic: age

text: ArrayExpress

characteristic: broker name

text: myeloid cell

characteristic: cell type

text: house mouse

characteristic: common name

text: Protocols: Single cells from aortas were digested in 5% FBS/RPMI containing 450 U/ml collagenase I, 125 U/ml collagenase XI 60 U/ml hyaluronidase and 60 U/ml DNase I for 50 minutes at 37°C. Cells were retrieved by passing tissue pieces through a 70 um cell strainer and were pooled from 9 mice in each genotype. Unspecific binding was blocked by incubating cells with murine anti-CD16/32 antibody. Cells were stained with antibodies against CD45, CD11b and CD64 and LIVE/DEAD viability dye. Live CD45+ CD11b+ cells were sorted for sequencing. Library generation for 10x Genomics v2 chemistry was performed following the Chromium Single Cell 3ʹ Reagents Kits (User Guide: CG00052). Quantification of cDNA and library construction was performed using a Qubit dsDNA HS Assay Kit (ThermoFisher Scientific) and high-sensitivity DNA tapestation (Agilent).

characteristic: description

text: adult

characteristic: developmental stage

text: high fat diet

characteristic: diet

text: atherosclerosis

characteristic: disease

text: ApoE-/-

characteristic: genotype

text: high fat diet for 12 weeks

characteristic: growth condition

text: pool of 9 mice

text: Mus musculus

text: Mus musculus

text: aorta

characteristic: organism part

text: Mus musculus

text: female

text: Sample 1


E-MTAB-10746:Sample 2

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10746:Sample 2

text: ArrayExpress

text: myeloid cell

text: house mouse

text: adult

text: high fat diet

text: atherosclerosis

text: ApoE-/- Clec4a2-/-

text: high fat diet for 12 weeks

characteristic: immunophenotype

text: pool of 9 mice

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: aorta

text: Mus musculus

text: female

characteristic: sex

characteristic: strain

text: Sample 2

characteristic: title


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-10781:05_GP(TaCBF14)_20C/17C_rep2

tag: Namespace:Agricultural Institute, Centre for Agricultural Research, ELKH

characteristic: Submitter Id

unit: day

characteristic: age

text: ArrayExpress

characteristic: broker name

text: Golden Promise

characteristic: cultivar

text: Protocols: Leaf samples were taken from control condition and after 24 h and 72 h cold-treatment - using the wild type Golden Promise barley (Hordeum vulgare L.) genotype and the TaCBF14 and TaCBF15 overexpressing transgenic barley lines. In both cases (control condition and cold-treatment), samples were collected after 10h illumination. Samples from five plants were pooled and homogenized. Three replication were used from each sample. Barley plants were grown under controlled conditions (20/17°C; 12/12 h long day/light under 400 µE m-2 s-1 light intensity; 65% relative humidity) and 3-weeks-old plants were used for sampling. Cold-treatment was carried out at 5/5 °C day/night temperature, 12 h illumination, 400 µE m-2 s-1 light intensity, 65% relative humidity. Total RNA was extracted from barley leaves by using TRIzol® Reagent (Invitrogen) following the manufacturer’s instructions. The RNA concentrations were determined by NanoDrop 2000 Spectrophotometer (Thermo Scientific). For mRNA library construction Illumina TruSeq RNA library kit was applied according to the manufacturer’s protocol.

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: TaCBF14 overexpression

text: plant growing chamber 20°C/20°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: ENA-CHECKLIST

text: Agricultural Institute, Centre for Agricultural Research, ELKH

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10781:06_GP(TaCBF14)_20C/17C_rep3

text: ArrayExpress

text: Golden Promise

text: leaf production stage

text: TaCBF14 overexpression

characteristic: genotype

text: plant growing chamber 20°C/20°C

characteristic: growth condition

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

characteristic: organism part

text: Hordeum vulgare


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10781:04_GP(TaCBF14)_20C/17C_rep1

text: ArrayExpress

text: Golden Promise

text: leaf production stage

text: TaCBF14 overexpression

text: plant growing chamber 20°C/20°C

text: Hordeum vulgare

characteristic: organism

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare

characteristic: title


characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: Golden Promise

text: leaf production stage

text: cold temperature regimen

characteristic: environmental stress

text: TaCBF14 overexpression

text: plant growing chamber, 5°C/5°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: ENA-CHECKLIST

text: public

text: E-MTAB-10781:07_GP(TaCBF15)_20C/17C_rep1

text: ArrayExpress

characteristic: broker name

text: Golden Promise

characteristic: cultivar

characteristic: description

text: leaf production stage

characteristic: developmental stage

text: TaCBF15 overexpression

text: plant growing chamber 20°C/20°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10781:08_GP(TaCBF15)_20C/17C_rep2

text: ArrayExpress

text: Golden Promise

text: leaf production stage

text: TaCBF15 overexpression

characteristic: genotype

text: plant growing chamber 20°C/20°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

text: E-MTAB-10781:09_GP(TaCBF15)_20C/17C_rep3

text: ArrayExpress

text: Golden Promise

text: leaf production stage

text: TaCBF15 overexpression

text: plant growing chamber 20°C/20°C

characteristic: growth condition

text: Hordeum vulgare

characteristic: organism

text: Hordeum vulgare

text: leaf

characteristic: organism part

text: Hordeum vulgare


characteristic: External Id

text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

text: Golden Promise

text: leaf production stage

text: cold temperature regimen

text: TaCBF15 overexpression

text: plant growing chamber, 5°C/5°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare

characteristic: title


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: Golden Promise

characteristic: cultivar

characteristic: description

text: leaf production stage

text: wild type genotype

text: plant growing chamber 20°C/20°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: ArrayExpress

text: Golden Promise

text: leaf production stage

characteristic: developmental stage

text: cold temperature regimen

characteristic: environmental stress

text: wild type genotype

text: plant growing chamber, 5°C/5°C

text: Hordeum vulgare

text: Hordeum vulgare

text: leaf

text: Hordeum vulgare


characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

tag: Namespace:Pohang University of Science and Technology

text: ArrayExpress

text: thale cress

characteristic: common name

text: Protocols: unopened floral bud long day conditions (16 hr light), 20 degrees Celsius Tag DNA enzyme & buffer kit (Illumina, 20034210) Nextera DNA CD Index

text: flower development stage

text: Col

characteristic: ecotype

characteristic: genotype

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

text: Arabidopsis thaliana


characteristic: External Id

text: Pohang University of Science and Technology

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: thale cress

text: flower development stage

text: Col

text: wild type genotype

text: Arabidopsis thaliana

characteristic: organism

text: Arabidopsis thaliana

text: flower bud

characteristic: organism part

text: Arabidopsis thaliana


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

characteristic: broker name

text: thale cress

characteristic: description

text: flower development stage

text: Col

text: Arabidopsis thaliana

text: Arabidopsis thaliana

text: flower bud

text: Arabidopsis thaliana

characteristic: title


E-MTAB-10774:Sample 2

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10774:Sample 2

tag: Namespace:Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University

text: 83 to 90

characteristic: age

text: ArrayExpress

text: Japanese rice

text: Samgwang

characteristic: cultivar

text: Protocols: Developing rice (Oryza sativa) seeds of Samgwang were harvested from one panicle per plant (total five plants per a replication). Normal land indicates just common paddy field with very low salt concentration. Reclaimed land contains extremely high concentration of sodium, potassium, magnesium and sulfur, compared to normal land. Total RNA was extracted from developing seeds of Samgwang using the RNeasy Plant Mini Kit (QIAGEN, Hilden, Germany), according to the manufacturer’s instructions. TruSeq RNA Sample Prep Kit v2 was used for library construction.

text: seed maturation stage

characteristic: developmental stage

text: wild type genotype

text: normal land

characteristic: growth condition

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: seed

text: Oryza sativa Japonica Group

text: Sample 2


E-MTAB-10774:Sample 1

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University

text: public

characteristic: INSDC status

text: E-MTAB-10774:Sample 1

text: 83 to 90

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Samgwang

text: seed maturation stage

text: wild type genotype

characteristic: genotype

text: normal land

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: seed

text: Oryza sativa Japonica Group

text: Sample 1


E-MTAB-10774:Sample 3

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-10774:Sample 3

characteristic: Submitter Id

text: 83 to 90

text: ArrayExpress

text: Japanese rice

text: Samgwang

text: seed maturation stage

text: wild type genotype

text: normal land

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: seed

characteristic: organism part

text: Oryza sativa Japonica Group

text: Sample 3


E-MTAB-10774:Sample 4

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-10774:Sample 4

text: 83 to 90

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Samgwang

characteristic: description

text: seed maturation stage

text: wild type genotype

text: normal land

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: seed

text: Oryza sativa Japonica Group

text: Sample 4

characteristic: title


E-MTAB-10774:Sample 5

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10774:Sample 5

text: 83 to 90

characteristic: age

text: ArrayExpress

text: Japanese rice

text: Samgwang

characteristic: cultivar

text: seed maturation stage

characteristic: developmental stage

text: wild type genotype

text: reclaimed land

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: seed

text: Oryza sativa Japonica Group

text: Sample 5


E-MTAB-10774:Sample 6

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

text: E-MTAB-10774:Sample 6

text: 83 to 90

text: ArrayExpress

text: Japanese rice

characteristic: common name

text: Samgwang

text: seed maturation stage

text: wild type genotype

text: reclaimed land

characteristic: growth condition

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: seed

text: Oryza sativa Japonica Group

text: Sample 6


E-MTAB-10774:Sample 7

characteristic: External Id

text: public

characteristic: SRA accession

text: E-MTAB-10774:Sample 7

characteristic: Submitter Id

text: 83 to 90

text: ArrayExpress

text: Japanese rice

text: Samgwang

text: seed maturation stage

text: wild type genotype

characteristic: genotype

text: reclaimed land

text: Oryza sativa Japonica Group

characteristic: organism

text: Oryza sativa Japonica Group

text: seed

text: Oryza sativa Japonica Group

text: Sample 7


E-MTAB-10774:Sample 8

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

text: E-MTAB-10774:Sample 8

text: 83 to 90

text: ArrayExpress

characteristic: broker name

text: Japanese rice

text: Samgwang

characteristic: description

text: seed maturation stage

text: wild type genotype

text: reclaimed land

text: Oryza sativa Japonica Group

text: Oryza sativa Japonica Group

text: seed

characteristic: organism part

text: Oryza sativa Japonica Group

text: Sample 8


Oocyte 1 - O1

text: UNIVERSITY OF WARMIA AND MAZURY

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: Oocyte 1 - O1

tag: Namespace:UNIVERSITY OF WARMIA AND MAZURY

text: Oocyte

text: turkey

text: O1 - germinal disc region of mature oocyte 1

text: Meleagris gallopavo

text: Meleagris gallopavo

text: female

characteristic: sex

text: germinal disc region of mature oocyte

characteristic: title


Oocyte 2 - O2

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WARMIA AND MAZURY

text: public

characteristic: INSDC status

text: Oocyte 2 - O2

text: Oocyte

text: turkey

text: O2 - germinal disc region of mature oocyte 2

text: Meleagris gallopavo

text: Meleagris gallopavo

text: female

text: germinal disc region of mature oocyte


Oocyte 3 - O3

characteristic: External Id

text: UNIVERSITY OF WARMIA AND MAZURY

text: public

text: Oocyte 3 - O3

text: Oocyte

text: turkey

characteristic: common name

text: O3 - germinal disc region of mature oocyte 3

text: Meleagris gallopavo

text: Meleagris gallopavo

text: female

text: germinal disc region of mature oocyte


Oocyte 4 - O4

text: UNIVERSITY OF WARMIA AND MAZURY

text: public

characteristic: SRA accession

text: Oocyte 4 - O4

characteristic: Submitter Id

text: Oocyte

text: turkey

text: O4 - germinal disc region of mature oocyte 4

text: Meleagris gallopavo

text: Meleagris gallopavo

text: female

text: germinal disc region of mature oocyte


Oocyte 5 - O5

text: UNIVERSITY OF WARMIA AND MAZURY

text: public

text: Oocyte 5 - O5

text: Oocyte

text: turkey

text: O5 - germinal disc region of mature oocyte 5

text: Meleagris gallopavo

characteristic: organism

text: Meleagris gallopavo

text: female

text: germinal disc region of mature oocyte


Oocyte 6 - O6

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF WARMIA AND MAZURY

text: public

text: Oocyte 6 - O6

text: Oocyte

text: turkey

text: O6 - germinal disc region of mature oocyte 6

text: Meleagris gallopavo

text: Meleagris gallopavo

text: female

text: germinal disc region of mature oocyte


text: ED

characteristic: INSDC center name

text: public

text: human

text: Isogenic control line

text: Homo sapiens

text: Homo sapiens

text: Control sample 1


text: ED

text: public

text: human

text: Isogenic control line

text: Homo sapiens

text: Homo sapiens

text: Control sample 2


text: ED

text: public

text: human

text: Isogenic control line

text: Homo sapiens

text: Homo sapiens

text: Control sample 3


text: ED

text: public

text: human

text: 16p11.2 deletion line

text: Homo sapiens

text: Homo sapiens

text: Deletion sample 1


text: ED

text: public

text: human

text: 16p11.2 deletion line

text: Homo sapiens

text: Homo sapiens

text: Deletion sample 2


text: ED

text: public

text: human

text: 16p11.2 deletion line

text: Homo sapiens

text: Homo sapiens

text: Deletion sample 3


text: Universitat Pompeu Fabra

text: public

tag: Namespace:Universitat Pompeu Fabra

text: human

text: Homo sapiens

text: Homo sapiens

text: INSERTseq data


text: AALBORG UNIVERSITY

text: public

tag: Namespace:AALBORG UNIVERSITY

text: Denmark

characteristic: geographic location (country and/or sea)

text: Maabjerg

characteristic: geographic location (region and locality)

text: Anaerobic digester

characteristic: isolation source

text: metagenome

text: metagenome

text: MAA-SIP


CIIa

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC first public

text: public

text: CIIa

tag: Namespace:FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method

text: bacterial diversity in beech rhizosphere


CIIb

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CIIb

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


CIIc

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: CIIc

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq


CIId

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: CIId

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


CIIe

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: CIIe

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


LIIa

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LIIa

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq


LIIb

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: LIIb

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


LIIc

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: LIIc

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


LIId

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: LIId

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq


LIIe

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: LIIe

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


AIIa

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AIIa

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


AIIb

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AIIb

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq


AIIc

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: AIIc

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


AIId

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AIId

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


AIIe

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AIIe

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq


AHIIa

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: AHIIa

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


AHIIb

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AHIIb

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


AHIIc

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: AHIIc

characteristic: collection date

text: DNA-based analysis

characteristic: description

text: temperate forest

characteristic: environment (biome)

text: mesocosm experiment

characteristic: environment (feature)

text: rhizosphere soil

characteristic: environment (material)

text: Germany

characteristic: geographic location (country and/or sea)

text: mimarks-survey

text: uncultured bacterium

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq


AHIId

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: FRIEDRICH SCHILLER UNIVERSITY JENA

text: public

text: AHIId

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mimarks-survey

characteristic: investigation type

text: uncultured bacterium

text: plant-associated

characteristic: plant-associated environmental package

text: AquaDiva

characteristic: project name

text: uncultured bacterium

text: Illumina MiSeq

characteristic: sequencing method


AHIIe

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: FRIEDRICH SCHILLER UNIVERSITY JENA

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: AHIIe

characteristic: Submitter Id

text: DNA-based analysis

text: temperate forest

text: mesocosm experiment

text: rhizosphere soil

text: Germany

text: mimarks-survey

text: uncultured bacterium

characteristic: organism

text: plant-associated

text: AquaDiva

text: uncultured bacterium

text: Illumina MiSeq

characteristic: title


text: Universitat Pompeu Fabra

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: house mouse

characteristic: common name

text: Mus musculus

text: Mus musculus

text: INSERTseq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: MEDIZNISCHE HOCHSCHULE HANNOER

text: public

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa

text: Pseudomonas aeruginosa


FiCat

text: Universitat Pompeu Fabra

text: public

text: FiCat

text: house mouse

text: Mus musculus

text: Mus musculus

text: INSERTseq


text: NIOZ

text: public

characteristic: collection date

text: Marine

characteristic: environment (biome)

text: Intertidal

characteristic: environment (feature)

text: Sediments

characteristic: environment (material)

text: Yes

characteristic: environmental sample

text: Netherlands

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: environmental samples

characteristic: pcr primers

text: environmental samples

characteristic: target gene

characteristic: target subfragment

text: 18S eDNA benthic intertidal


characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:CIBIO-INBIO RESEARCH CENTER IN BIODIVERSITY AND GENETIC RESOURCES

characteristic: Submitter Id

text: Vitis_sp_1 [non Vitis vinifera based on morphology] (Sequencing data no. 1 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: Wild sample

characteristic: isolation source

text: Vitis sp. 1 HA-2021

characteristic: organism

text: Vitis sp. 1 HA-2021

text: Leaf

characteristic: tissue type

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: CIBIO-INBIO RESEARCH CENTER IN BIODIVERSITY AND GENETIC RESOURCES

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: collection date

text: Vitis_sp_1 [non Vitis vinifera based on morphology] (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

characteristic: geographic location (country and/or sea)

text: Wild sample

text: Vitis sp. 1 HA-2021

text: Vitis sp. 1 HA-2021

text: Leaf


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: Vitis_sp_2 [non Vitis vinifera based on morphology] (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis sp. 2 HA-2021

text: Vitis sp. 2 HA-2021

text: Leaf


characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Vitis_sp_2 [non Vitis vinifera based on morphology] (Sequencing data no. 2 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis sp. 2 HA-2021

text: Vitis sp. 2 HA-2021

text: Leaf


text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Vitis_sp_3 [non Vitis vinifera based on morphology] (Sequencing data no. 1 of 2)

text: Mature

text: Portugal

text: Wild sample

text: Vitis sp. 3 HA-2021

text: Vitis sp. 3 HA-2021

text: Leaf


text: public

text: Vitis_sp_3 [non Vitis vinifera based on morphology] (Sequencing data no. 2 of 2)

characteristic: description

text: Mature

characteristic: dev stage

text: Portugal

text: Wild sample

text: Vitis sp. 3 HA-2021

text: Vitis sp. 3 HA-2021

text: Leaf


text: IHU - Mediterranee Infection

text: public

tag: Namespace:IHU - Mediterranee Infection

text: blood

text: Acinetobacter sp. Marseille-P8610

characteristic: organism

text: Acinetobacter sp. Marseille-P8610

characteristic: strain

text: New bacterial species in clinical microbiology


text: NMBU

text: public

text: Atlantic salmon

characteristic: common name

text: Whole Genome Sequencing

text: Salmo salar

text: Salmo salar

text: Female

characteristic: sex

text: fin clip

characteristic: title


name: E-MTAB-10797:CD4+ Naive chromatin replicate 1

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

tag: Namespace:Fondazione Istituto Nazionale di Genetica Molecolare (INGM)

text: ArrayExpress

characteristic: broker name

text: naive thymus-derived CD4-positive, alpha-beta T cell

characteristic: cell type

text: human

text: Protocols: naive CD4+ T cells have been isolated from peripheral PBMCs by density gradient centrifugation with Ficoll-Paque Plus. From PBMCs, T cells were negatively selected with magnetic separator (AutoMACS). Naive CD4+ were FACS sorted as CD4+CD25-CD127-/highCD45RO-. Chromatin RNA have been extracted with Maxwell RSC miRNA Tissue kit Libraries were prepared starting from 75 ng of chromatin RNA, using the PCR-cDNA Barcoding Kit SQK-PCB109 (Oxford Nanopore Technologies, UK) and following manufacturer’s guidelines

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

text: chromatin associated RNA

characteristic: fraction

characteristic: immunophenotype

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: CD4+ Naive chromatin replicate 1


name: E-MTAB-10797:CD4+ Naive chromatin replicate 2

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Fondazione Istituto Nazionale di Genetica Molecolare (INGM)

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: adult

text: normal

text: chromatin associated RNA

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: CD4+ Naive chromatin replicate 2


name: E-MTAB-10797:CD4+ Naive chromatin replicate 4

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: normal

text: chromatin associated RNA

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: CD4+ Naive chromatin replicate 4

characteristic: title


E-MTAB-10798:CD4+ Naive LINE1 H3K36me3

text: public

text: E-MTAB-10798:CD4+ Naive LINE1 H3K36me3

text: ArrayExpress

characteristic: broker name

characteristic: cell type

text: human

text: Protocols: CD4+ naive T cells have been isolated from peripheral PBMCs by density gradient centrifugation with Ficoll-Paque Plus. From PBMCs, T cells were negatively selected with magnetic separator (AutoMACS). CD4+ Naive were FACS sorted as CD4+CD25-CD127-/highCD45RO-. CD4+ Naive T cells were treated with control (scr) or LINE1 ASO. Cross-linked, sonicated and Immunoprecipitated DNA was purified with AMPure beads XP NEB Next Ultra II

text: adult

characteristic: developmental stage

text: normal

characteristic: disease

characteristic: immunophenotype

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: CD4+ Naive LINE1 H3K36me3


E-MTAB-10798:CD4+ Naive LINE1 Input

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC first public

text: public

text: E-MTAB-10798:CD4+ Naive LINE1 Input

text: ArrayExpress

text: human

text: adult

text: normal

characteristic: individual

text: Homo sapiens

text: Homo sapiens

text: blood

characteristic: organism part

text: Homo sapiens

text: CD4+ Naive LINE1 Input


E-MTAB-10798:CD4+ Naive Scr H3K36me3

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10798:CD4+ Naive Scr H3K36me3

characteristic: Submitter Id

text: ArrayExpress

text: human

characteristic: description

text: adult

text: normal

text: Homo sapiens

text: Homo sapiens

text: blood

text: Homo sapiens

text: CD4+ Naive Scr H3K36me3


E-MTAB-10798:CD4+ Naive Scr Input

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: INSDC center name

text: public

text: E-MTAB-10798:CD4+ Naive Scr Input

text: ArrayExpress

text: human

characteristic: common name

text: adult

text: normal

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: blood

text: Homo sapiens

text: CD4+ Naive Scr Input


text: INRAE

text: public

characteristic: collection date

text: Israel

characteristic: geographic location (country and/or sea)

text: RNA-seq

characteristic: investigation type

text: hearts and livers of 4-week-old chickens in USA

characteristic: isolate

text: culture medium

characteristic: isolation source

text: Typhimurium

characteristic: serovar

characteristic: strain

text: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNAseq in culture medium

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Israel

text: RNA-seq

text: culture medium

text: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

text: Typhimurium


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: INRAE

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Israel

text: Homo sapiens

characteristic: host scientific name

text: Dual-RNA-seq

text: Human Hela cell

text: Typhimurium

text: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S RNAseq in Human Hela cell


text: INRAE

characteristic: INSDC center name

text: public

characteristic: collection date

text: Israel

characteristic: geographic location (country and/or sea)

text: Homo sapiens

text: RNA-seq

text: Israeli tourist who got infected in Nepal at 2009

text: culture medium

characteristic: organism

text: Paratyphi A

text: Salmonella enterica subsp. enterica serovar Paratyphi A RNAseq in culture medium


text: INRAE

text: public

text: Israel

text: Homo sapiens

text: RNA-seq

characteristic: investigation type

characteristic: isolate

text: culture medium

characteristic: isolation source

text: Salmonella enterica subsp. enterica serovar Paratyphi A

text: Paratyphi A

characteristic: serovar


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: INRAE

text: public

text: Israel

text: Homo sapiens

text: Dual-RNA-seq

text: Human Hela cell

text: Paratyphi A

characteristic: strain

text: Salmonella enterica subsp. enterica serovar Paratyphi A RNAseq in Human Hela cell

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:Tianjin Medical University Cancer Institute and Hospital

text: ArrayExpress

characteristic: broker name

text: HCT 116

characteristic: cell line

text: epithelial cell

characteristic: cell type

text: human

characteristic: common name

text: Protocols: Cells were pre-treated with 2 μg/mL harringtonine and 100 μg/mL cycloheximide, washed with pre-chilled 1ⅹ PBS and scraped for subsequent Ribo-seq. It was performed by Genedenovo Biotechnology Co., Ltd. (Guangzhou, China) It was performed by Genedenovo Biotechnology Co., Ltd. (Guangzhou, China)

characteristic: description

text: colorectal carcinoma

characteristic: disease

text: Homo sapiens

text: Homo sapiens

text: colon

characteristic: organism part

text: wild type

characteristic: phenotype

text: Homo sapiens


characteristic: ENA-FIRST-PUBLIC

text: Tianjin Medical University Cancer Institute and Hospital

characteristic: INSDC center name

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: ArrayExpress

text: HCT 116

text: epithelial cell

text: human

text: colorectal carcinoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: colon

text: oxaliplatin resistance

text: Homo sapiens


characteristic: ENA-CHECKLIST

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: public

text: ArrayExpress

text: HCT 116

text: epithelial cell

text: human

text: Protocols: Cells were washed with pre-chilled 1ⅹ PBS and scraped for subsequent RNA-seq. It was performed by Genedenovo Biotechnology Co., Ltd. (Guangzhou, China) It was performed by Genedenovo Biotechnology Co., Ltd. (Guangzhou, China)

text: colorectal carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: wild type

text: Homo sapiens

characteristic: title


characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: ArrayExpress

characteristic: broker name

text: HCT 116

text: epithelial cell

text: human

text: colorectal carcinoma

text: Homo sapiens

text: Homo sapiens

text: colon

text: oxaliplatin resistance

text: Homo sapiens


text: UNIVERSITY OF BERGEN

text: public

tag: Namespace:UNIVERSITY OF BERGEN

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M26_NORCE medium_5ml culture stock tube

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

unit: g

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M28_NORCE medium_5ml culture stock tube

characteristic: description

text: Laboratory

text: Puddefjorden

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain M29_NORCE medium_5ml culture stock tube

text: Laboratory

characteristic: environment (biome)

text: Puddefjorden

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain B58_NORCE medium_5ml culture stock tube

characteristic: description

text: Laboratory

text: Puddefjorden

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain UTEX 640_NORCE medium_5ml culture stock tube

text: Laboratory

characteristic: environment (biome)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: UTEX culture collection

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Entemoneis sp. strain M122_NORCE medium_5ml culture stock tube

characteristic: description

text: Laboratory

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


text: UNIVERSITY OF BERGEN

text: public

text: Entemoneis sp. strain M138_NORCE medium_5ml culture stock tube

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Entemoneis sp. strain M21_NORCE medium_5ml culture stock tube

characteristic: description

text: Laboratory

text: Greenland Sea Northwest of Svalbard

characteristic: environment (feature)

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Microchloropsis gaditana strain CCMP527_NORCE medium_5ml culture stock tube

text: Laboratory

characteristic: environment (biome)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: UTEX culture collection

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Tetraselmis chui strain UTEX LB 232_NORCE medium_5ml culture stock tube

characteristic: description

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

text: Tetraselmis suesica strain UTEX LB 2286_NORCE medium_5ml culture stock tube

text: Laboratory

characteristic: environment (biome)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: UTEX culture collection

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M26_Conway medium_5ml culture stock tube

text: Laboratory

text: Puddefjorden

characteristic: environment (feature)

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain M28_Conway medium_5ml culture stock tube

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Puddefjorden

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M29_Conway medium_5ml culture stock tube

text: Laboratory

text: Puddefjorden

characteristic: environment (feature)

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain B58_Conway medium_5ml culture stock tube

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Puddefjorden

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain UTEX 640_Conway medium_5ml culture stock tube

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Entemoneis sp. strain M122_Conway medium_5ml culture stock tube

text: Laboratory

text: Store Lungeg�rd

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


text: UNIVERSITY OF BERGEN

text: public

text: Entemoneis sp. strain M138_Conway medium_5ml culture stock tube

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Greenland Sea Northwest of Svalbard

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Entemoneis sp. strain M21_Conway medium_5ml culture stock tube

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: project name

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Tetraselmis chui strain UTEX LB 232_Conway medium_5ml culture stock tube

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: UTEX culture collection

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Tetraselmis suesica strain UTEX LB 2286_Conway medium_5ml culture stock tube

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

text: Control sample_medium only_NORCE medium

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Blank

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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text: Control sample_medium only_Conway medium

text: Laboratory

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text: Blank

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

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text: sediment

characteristic: sediment environmental package

text: MiSeq


text: UNIVERSITY OF BERGEN

text: public

text: Control sample_Filter only

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Laboratory

characteristic: environment (feature)

text: Blank

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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text: public

characteristic: INSDC status

characteristic: SRA accession

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characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M28_NORCE medium_70ml Multicultivator batch culture experiment_time point start

text: Laboratory

text: Store Lungeg�rd

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain B58_NORCE medium_70ml Multicultivator batch culture experiment_time point start

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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text: public

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characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain UTEX 640_NORCE medium_70ml Multicultivator batch culture experiment_time point start

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

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text: sediment

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain M28-A_NORCE medium_70ml Multicultivator batch culture experiment_time point day 5

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

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text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

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text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

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characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M28-B_NORCE medium_70ml Multicultivator batch culture experiment_time point day 5

text: Laboratory

text: Store Lungeg�rd

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain B58-A_NORCE medium_70ml Multicultivator batch culture experiment_time point day 5

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

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characteristic: ENA-LAST-UPDATE

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text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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text: public

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characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain B58-B_NORCE medium_70ml Multicultivator batch culture experiment_time point day 5

text: Laboratory

text: Store Lungeg�rd

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain UTEX 640-A_NORCE medium_70ml Multicultivator batch culture experiment_time point day 5

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: UTEX culture collection

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

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characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

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characteristic: INSDC status

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characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain UTEX 640-B_NORCE medium_70ml Multicultivator batch culture experiment_time point day 5

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain M28-A_NORCE medium_70ml Multicultivator batch culture experiment_time point day 10

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

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characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


characteristic: ENA-CHECKLIST

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characteristic: INSDC center name

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characteristic: INSDC status

characteristic: SRA accession

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characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain M28-B_NORCE medium_70ml Multicultivator batch culture experiment_time point day 10

text: Laboratory

text: Store Lungeg�rd

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain B58-A_NORCE medium_70ml Multicultivator batch culture experiment_time point day 10

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: Store Lungeg�rd

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: Norway

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: University of Bergen

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain B58-B_NORCE medium_70ml Multicultivator batch culture experiment_time point day 10

text: Laboratory

text: Store Lungeg�rd

text: Water

text: Water

text: Norway

text: University of Bergen

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: title


text: UNIVERSITY OF BERGEN

text: public

text: Phaeodactylum tricornutum strain UTEX 640-A_NORCE medium_70ml Multicultivator batch culture experiment_time point day 10

characteristic: description

text: Laboratory

characteristic: environment (biome)

text: unknown

characteristic: environment (feature)

text: Water

characteristic: environment (material)

text: Water

characteristic: environmental package

text: USA

characteristic: geographic location (country and/or sea)

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: UTEX culture collection

characteristic: geographic location (region and locality)

text: metagenome

characteristic: investigation type

text: unidentified prokaryotic organism

characteristic: organism

text: 799F, 1193R

text: Microalgae Microbiome

characteristic: project name

text: unidentified prokaryotic organism

text: sediment

characteristic: sediment environmental package

text: MiSeq


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF BERGEN

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

characteristic: depth

text: Phaeodactylum tricornutum strain UTEX 640-B_NORCE medium_70ml Multicultivator batch culture experiment_time point day 10

text: Laboratory

text: Water

text: Water

text: USA

text: UTEX culture collection

text: metagenome

text: unidentified prokaryotic organism

text: 799F, 1193R

characteristic: pcr primers

text: Microalgae Microbiome

characteristic: sample volume or weight for DNA extraction

text: unidentified prokaryotic organism

text: sediment

text: MiSeq

characteristic: sequencing method


text: Postdoctoral fellow

text: public

tag: Namespace:Postdoctoral fellow

characteristic: age

text: ArrayExpress

characteristic: broker name

text: house mouse

characteristic: common name

text: Protocols: Mice were euthanized and colon tissues were harvested. The rectal tissues were discarded and the wound area identified with the help of a dissection microscope. The wound area was dissected out using a 3 millimeter standard biopsy puncher. Total RNA from the tissues were harvested using the column purification method using the Total RNA Kit, peqGOLD (VWR GmbH, Munich, Germnay) as per the manufacturer's instructions. From RNA samples extraction to final data obtained, every step of procedures containing samples testing, library construction and sequencing would directly affect the quality and quantity of data, which determines the bioinfomatic analysis results. Novogene promises to strictly control on all production data with high quality output and ensure the raw data accurate and reliable. Briefly, mRNA from Eukaryote organisms is purified from total RNA using poly-T oligo-attached magnetic beads (For prokaryotes, mRNA was purified through the removal ofrRNA by using kit). The mRNA is first fragmented randomly by addition of fragmentation buffer. Then first strand cDNA is synthesized using random hexamer primer and M-MuLV Reverse Transcriptase (RNase H-). Second strand cDNA synthesis is subsequently performed using DNA Polymerase I and RNase H. Double-stranded cDNA is purified using AMPure XP beads. Remaining overhangs of the purified double-stranded cDNA are converted into blunt ends via exonuclease/polymerase activities. After adenylation of 3' ends of DNA fragments, NEBNext Adaptor with hairpin loop structure is ligated to prepare for hybridization. In order to select cDNA fragments of preferentially 150~200 bp in length, the library fragments are purified with AMPure XP system (Beckma Coulter, Beverly, USA). Finally, the final library is gotten by PCR amplification and purification of PCR products by AMPure XP beads.

characteristic: description

text: adult

characteristic: developmental stage

text: wild type genotype

characteristic: genotype

characteristic: individual

text: Mus musculus

characteristic: organism

text: Mus musculus

text: descending colon

characteristic: organism part

text: Mus musculus

text: male

characteristic: sex

characteristic: strain

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:EAFIT UNIVERSITY

characteristic: Submitter Id

characteristic: collection date

text: in vitro banana plant

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

text: Effect of Bacillus subtilis EA-CB0575 on the microbiota of banana plants

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: in vitro banana plant roots, sample 01


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: in vitro banana plant

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: in vitro banana plant roots, sample 02

characteristic: title


text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: in vitro banana plant

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: in vitro banana plant roots, sample 03


text: EAFIT UNIVERSITY

text: public

text: in vitro banana plant

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: in vitro banana plant roots, sample 04


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: in vitro banana plant

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

characteristic: organism

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: in vitro banana plant roots, sample 05


text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: in vitro banana plant

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: in vitro banana plant roots, sample 06

characteristic: title


text: EAFIT UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: in vitro banana plant

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: in vitro banana plant roots, sample 07


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: in vitro banana plant

text: agricultural field

text: root/rhizosphere

text: Colombia

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: in vitro banana plant roots, sample 08


text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: banana plant roots without bacterial inoculation, 24h before pathogen infection

characteristic: description

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 01 (Control)


text: EAFIT UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: plants under greenhouse conditions

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: greenhouse banana plant roots, sample 02 (Control)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 03 (Control)


text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 04 (Control)


text: EAFIT UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: plants under greenhouse conditions

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: greenhouse banana plant roots, sample 05 (Control)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 06 (Control)


text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: banana plant roots inoculated 150 DAI with B. subtilis EA-CB0575, 24h before pathogen infection

characteristic: description

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 07 (EA-CB0575)


text: EAFIT UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: plants under greenhouse conditions

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: greenhouse banana plant roots, sample 08 (EA-CB0575)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 09 (EA-CB0575)


text: EAFIT UNIVERSITY

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: description

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

text: metagenome

text: metagenome

text: plant-associated

characteristic: plant-associated environmental package

characteristic: project name

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 10 (EA-CB0575)


text: EAFIT UNIVERSITY

text: public

characteristic: Submitter Id

characteristic: collection date

text: plants under greenhouse conditions

characteristic: environment (biome)

text: agricultural field

characteristic: environment (feature)

text: root/rhizosphere

characteristic: environment (material)

text: Colombia

characteristic: geographic location (country and/or sea)

text: metagenome

text: metagenome

text: plant-associated

text: metagenome

text: Illumina MiSeq

characteristic: sequencing method

text: greenhouse banana plant roots, sample 11 (EA-CB0575)

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: EAFIT UNIVERSITY

text: public

text: plants under greenhouse conditions

text: agricultural field

text: root/rhizosphere

text: Colombia

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome

characteristic: investigation type

text: metagenome

characteristic: organism

text: plant-associated

text: metagenome

text: Illumina MiSeq

text: greenhouse banana plant roots, sample 12 (EA-CB0575)