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characteristic: ENA-LAST-UPDATE

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characteristic: ENA-CHECKLIST

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characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Suspect sampling

text: IMS-10150-CVDP-E79F10E7-11FB-46D1-A4CF-C916D2CAC57F

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Robert Koch Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Suspect sampling

text: IMS-10150-CVDP-235DF0FA-8D63-4911-8E9F-D81ABD71814B

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Bavaria

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Suspect sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-A242778D-FA5E-4774-A9C2-E45B90FE60DC

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Robert Koch Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Suspect sampling

text: IMS-10150-CVDP-6F0AE1C1-5437-4A19-BAAE-CD4F19259726

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

characteristic: sample capture status

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Suspect sampling

text: IMS-10150-CVDP-BAB3D51D-9AA8-45A3-9038-83CBC241E610

text: RKI-OSEDA

text: SYNLAB MVZ Weiden, Zur Kesselschmiede 4; 92637 Weiden in der Oberpfalz

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Bavaria

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Robert Koch Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: Suspect sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-BB233F19-F1ED-4B29-A635-FA437E014CD1

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

text: Synlab MVZ Augsburg, Gubener Str. 39; 86156 Augsburg

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided

text: Severe acute respiratory syndrome coronavirus 2


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

text: Suspect sampling

text: IMS-10150-CVDP-B5EC215E-F43B-46DA-8ABE-40257B654F92

text: RKI-OSEDA

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolate

characteristic: organism

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Robert Koch Institute

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: Suspect sampling

text: IMS-10150-CVDP-733FF35B-438A-4CD5-AA80-E7F688FBFED0

text: RKI-OSEDA

text: not provided

characteristic: collector name

text: Germany

characteristic: geographic location (country and/or sea)

text: Europe/Germany/Bavaria

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: not provided

text: not provided

text: not provided

text: Molecular surveillance of SARS-CoV-2 in Germany


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: Robert Koch Institute

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: Suspect sampling

characteristic: Sampling Strategy

text: IMS-10150-CVDP-DD866564-1BED-4402-8BB9-9DB1488C8EFD

characteristic: Submitter Id

text: RKI-OSEDA

characteristic: broker name

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Germany

text: Europe/Germany/Bavaria

text: Human

text: not provided

text: Homo sapiens

text: not provided

text: not provided

text: not provided


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:BOGOR AGRICULTURAL UNIVERSITY (IPB)

text: Deden Derajat Matra

characteristic: collected by

text: Bogor Agricultural University (IPB University)

text: Long reads sequencing for M. casturi Project

characteristic: description

text: Indonesia

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Banjar, Kalimantan Selatan

text: wetland

characteristic: habitat

text: adult

characteristic: lifestage

text: Mangifera casturi

characteristic: organism

text: Leaves

characteristic: organism part

text: ORG.one

characteristic: project name

text: Mangifera casturi

text: hermaphrodite

characteristic: sex

characteristic: specimen voucher

text: Whole Genome Sequencing of Kasturi-01

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: BOGOR AGRICULTURAL UNIVERSITY (IPB)

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: Deden Derajat Matra

characteristic: collecting institution

characteristic: collection date

text: Long reads sequencing for M. casturi

text: Indonesia

characteristic: geographic location (country and/or sea)

text: Banjar, Kalimantan Selatan

characteristic: geographic location (region and locality)

text: wetland

text: adult

text: Mangifera casturi

text: Leaves

text: ORG.one

text: Mangifera casturi

text: hermaphrodite

text: Whole Genome Sequencing of Kasturi-02


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF COLOGNE

characteristic: INSDC last update

text: public

characteristic: INSDC status

tag: Namespace:UNIVERSITY OF COLOGNE

text: Afganistan

characteristic: country

text: Homo sapiens

characteristic: host

text: Yes

characteristic: host associated

text: Acinetobacter baumannii

text: Acinetobacter baumannii


E-MTAB-10927:Sample 1

characteristic: ENA-LAST-UPDATE

text: University of Padova - TESAF Department

text: public

text: E-MTAB-10927:Sample 1

tag: Namespace:University of Padova - TESAF Department

text: ArrayExpress

characteristic: broker name

text: Protocols: Conidia of P. oryzae (IT10 strain) were cultured in 1.8 mL Complete Medium (CM; Talbot et al., 1993) at a final concentration of 2x105 conidia per mL for 3 days at 30 °C under shaking at 150 rpm. After three days, 50 µM of Pep 4rink, one of the most effective peptides in vivo, were added to samples containing actively growing mycelium. Untreated samples were used as control. Three h after peptide treatment, fungal mycelia were collected, filtered with 100 µm Cell Strainer (Corning®), rinsed with sterile water and stored at -80 °C for RNA extraction. Total RNA was extracted with the RNeasy Plant Mini kit (Qiagen) following the manufacturer’s instructions, performing the DNase digestion directly on the column. Two µg of total RNA were subjected to PolyA tail capture and rRNA depletion for selection of mRNA. Directional (stranded) RNA libraries were prepared, quantified and subjected to quality control. Sequencing was performed on Illumina Nova Seq 6000 platform.

characteristic: description

text: complete medium

characteristic: growth condition

text: Pyricularia oryzae 70-15

characteristic: organism

text: Pyricularia oryzae 70-15

text: whole organism

characteristic: organism part

text: Pyricularia oryzae 70-15

characteristic: strain

text: Sample 1

characteristic: title


E-MTAB-10927:Sample 3

characteristic: External Id

text: University of Padova - TESAF Department

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-10927:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: complete medium

text: Pyricularia oryzae 70-15

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 3


E-MTAB-10927:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Padova - TESAF Department

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10927:Sample 5

text: ArrayExpress

text: complete medium

text: Pyricularia oryzae 70-15

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 5


E-MTAB-10927:Sample 7

characteristic: ENA-LAST-UPDATE

text: University of Padova - TESAF Department

text: public

text: E-MTAB-10927:Sample 7

text: ArrayExpress

text: complete medium

text: Pyricularia oryzae 70-15

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 7


E-MTAB-10927:Sample 2

text: University of Padova - TESAF Department

text: public

text: E-MTAB-10927:Sample 2

text: ArrayExpress

characteristic: broker name

text: complete medium

text: Pyricularia oryzae 70-15

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 2


E-MTAB-10927:Sample 4

text: University of Padova - TESAF Department

text: public

text: E-MTAB-10927:Sample 4

text: ArrayExpress

characteristic: description

text: complete medium

text: Pyricularia oryzae 70-15

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 4


E-MTAB-10927:Sample 6

text: University of Padova - TESAF Department

text: public

text: E-MTAB-10927:Sample 6

text: ArrayExpress

text: complete medium

characteristic: growth condition

text: Pyricularia oryzae 70-15

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 6


E-MTAB-10927:Sample 8

text: University of Padova - TESAF Department

text: public

text: E-MTAB-10927:Sample 8

text: ArrayExpress

text: complete medium

text: Pyricularia oryzae 70-15

characteristic: organism

text: Pyricularia oryzae 70-15

text: whole organism

text: Pyricularia oryzae 70-15

text: Sample 8


E-MTAB-10666:Sample 1

text: UNIVERSITY OF WASHINGTON

text: public

text: E-MTAB-10666:Sample 1

tag: Namespace:UNIVERSITY OF WASHINGTON

text: ArrayExpress

text: spinal cord motor neuron

text: human

characteristic: common name

text: Protocols: Bulk RNA samples from WTC11 cells were isolated using the Trizol reagent and according to the manufacturers’ protocol. Bulk RNA samples from WTC11 cells were isolated using the Trizol reagent and according to the manufacturers’ protocol. Quality of the isolated RNA was confirmed using TapeStation; only samples with an RNAi value of 8.5 or greater were used for library preparation. Illumina Hiseq workflow

text: normal

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: induced pluripotent stem cell

characteristic: progenitor cell type

characteristic: replicate

text: Homo sapiens

text: Sample 1


E-MTAB-10666:Sample 2

characteristic: External Id

text: UNIVERSITY OF WASHINGTON

characteristic: INSDC center name

characteristic: INSDC first public

text: public

characteristic: SRA accession

text: E-MTAB-10666:Sample 2

text: ArrayExpress

text: spinal cord motor neuron

text: human

text: normal

text: wild type genotype

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 2

characteristic: title


E-MTAB-10666:Sample 3

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF WASHINGTON

characteristic: INSDC last update

text: public

characteristic: INSDC status

text: E-MTAB-10666:Sample 3

characteristic: Submitter Id

text: ArrayExpress

text: spinal cord motor neuron

text: human

text: amyotrophic lateral sclerosis

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 3


E-MTAB-10666:Sample 4

characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF WASHINGTON

text: public

text: E-MTAB-10666:Sample 4

text: ArrayExpress

characteristic: broker name

text: spinal cord motor neuron

text: human

characteristic: description

text: amyotrophic lateral sclerosis

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 4


E-MTAB-10666:Sample 5

text: UNIVERSITY OF WASHINGTON

text: public

text: E-MTAB-10666:Sample 5

text: ArrayExpress

text: spinal cord motor neuron

text: human

characteristic: common name

text: amyotrophic lateral sclerosis

characteristic: disease

characteristic: genotype

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: induced pluripotent stem cell

text: Homo sapiens

text: Sample 5


characteristic: External Id

characteristic: INSDC center name

text: public

tag: Namespace:Abigail Research Institute at Nationwide Children's Hospital

text: ArrayExpress

text: no immunoparalysis

characteristic: clinical information

text: human

text: Protocols: Whole blood (0.6 to 1ml) was drawn into tubes containing 1 ml of TempusTM RNA stabilization solution (Applied Biosystems). The tubes were shaken vigorously then immediately frozen and stored at -20°C for batch analysis. RNA was isolated using the MagMax for Stabilized Blood Tubes RNA Isolation kit (Life Technologies) via a modification of the manufacture’s protocol to permit small volume blood sampling as follows (15). 100 ul of Tempus 1x PBS was added to each blood sample and vortexed for 30 seconds. Tubes were centrifuged at 4,000 x g for 20 minutes at 4°C to pellet the crude RNA. Pellets were washed with 4ml Tempus Pre-Digestions Wash, centrifuged at 4,000 x g, resuspended in 120 ul of Tempus Resuspension Solution and Proteinase and vortexed for 10 seconds to resuspend the pellet. 10 ul of TURBOTM DNase was added and the tubes and vortexed for 10 minutes. 50 ul of Binding Solution Concentrate and 20 ul of RNA binding beads were then added and the tube was vortexed for 1 minute. 200 ul of 100% isopropanol was added for another 3-minute vortex. A magnetic stand was used to capture the RNA binding beads with the supernatant discarded. 150 ul of Wash Solution 1 was added to the tube and vortexed for 1 minute. The tube was then placed on the magnetic stand to capture the RNA Binding beads, discarding the supernatant. This wash was repeated once. 150 ul of Wash Solution 2 was added to the tube and vortexed for 1 minute then put back on the magnetic stand. The supernatant was carefully discarded, and the wash was repeated. The tubes were inverted on absorbent paper for 2 minutes to dry the beads then 60 ul of Elution Buffer was added. The tubes were vortexed for 4 minutes and put back on the magnetic stand. The RNA-containing supernatant was extracted from the tubes and stored at -20 °C. Strand-specific RNA-seq libraries were prepared using NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following the manufacturer’s recommendations. In summary, total RNA quality was assessed using RNA 6000 Nano kit on Agilent 2100 Bioanalyzer (Agilent Biotechnologies) and concentration measured using Qubit RNA HS assay kit (Life Technologies). An aliquot of total RNA was rRNA depleted using NEB’s Human/Mouse/Rat RNAse-H based Depletion kit (New England BioLabs). Following rRNA removal, mRNA was fragmented and then used for first- and second-strand cDNA synthesis with random hexamer primers. ds cDNA fragments underwent end-repair and a-tailing and ligated to dual-unique adapters (Integrated DNA Technologies). Adaptor-ligated cDNA was amplified by limit-cycle PCR. Library quality was analyzed on Tapestation High-Sensitivity D1000 ScreenTape (Agilent Biotechnologies) and quantified by KAPA qPCR (KAPA BioSystems).

text: juvenile stage

characteristic: developmental stage

text: septic shock

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: whole blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: Abigail Research Institute at Nationwide Children's Hospital

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: ArrayExpress

text: no immunoparalysis

text: human

text: juvenile stage

text: septic shock

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: whole blood

text: Homo sapiens

text: female

characteristic: title


characteristic: ENA-LAST-UPDATE

text: public

characteristic: INSDC status

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: immunoparalysis

text: human

characteristic: description

text: juvenile stage

text: septic shock

text: not applicable

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: whole blood

text: Homo sapiens

text: male


characteristic: External Id

characteristic: INSDC center name

text: public

text: ArrayExpress

text: immunoparalysis

text: human

characteristic: common name

text: juvenile stage

text: septic shock

characteristic: disease

text: not applicable

characteristic: isolate

text: Homo sapiens

text: Homo sapiens

text: whole blood

text: Homo sapiens

text: female


characteristic: ENA-CHECKLIST

text: public

text: ArrayExpress

text: no immunoparalysis

characteristic: clinical information

text: human

text: juvenile stage

characteristic: developmental stage

text: septic shock

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: whole blood

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex


text: Anopheles gambiae

characteristic: ArrayExpress-SPECIES

characteristic: ENA-FIRST-PUBLIC

text: SC

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: African malaria mosquito

text: Anopheles gambiae

text: Anopheles gambiae

characteristic: subject id

characteristic: title


characteristic: ENA-LAST-UPDATE

characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N701_S502.C9JGJANXX

tag: Namespace:UNIVERSITY OF CAMBRIDGE

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

characteristic: cell line

text: neonate forebrain-derived cell

characteristic: cell type

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 in an RNAse-inhibitor supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

characteristic: description

text: neonate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: frontal lobe

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.12168.N701_S503.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

characteristic: common name

text: neonate

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.12168.N701_S504.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N701_S517.C9JGJANXX

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

characteristic: cell line

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.12168.N702_S502.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: neonate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: frontal lobe

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.12168.N702_S503.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

characteristic: common name

text: neonate

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.12168.N702_S504.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N702_S517.C9JGJANXX

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.12168.N703_S502.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

characteristic: cell line

text: neonate forebrain-derived cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: neonate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: frontal lobe

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.12168.N703_S503.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

characteristic: common name

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.12168.N703_S504.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N703_S517.C9JGJANXX

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.12168.N704_S502.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

characteristic: cell line

text: neonate forebrain-derived cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: neonate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.12168.N704_S503.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

characteristic: common name

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.12168.N704_S504.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N704_S517.C9JGJANXX

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.12168.N705_S502.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

characteristic: cell line

text: neonate forebrain-derived cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: neonate

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: frontal lobe

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.12168.N705_S503.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

characteristic: common name

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 in an RNAse-inhibitor supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.12168.N705_S504.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N705_S517.C9JGJANXX

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.12168.N706_S502.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

characteristic: cell line

text: neonate forebrain-derived cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: neonate

characteristic: developmental stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.12168.N706_S503.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

characteristic: common name

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.12168.N706_S504.C9JGJANXX

text: ArrayExpress

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.12168.N706_S517.C9JGJANXX

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: Neonate forebrain-derived cells

text: neonate forebrain-derived cell

text: white-tufted-ear marmoset

text: neonate

text: Callithrix jacchus

text: Callithrix jacchus

text: frontal lobe

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i701_i502.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i701_i503.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i701_i505.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i702_i502.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i702_i503.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i702_i505.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i702_i506.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i702_i507.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i703_i502.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i703_i503.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i703_i505.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 in an RNAse-inhibitor supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i703_i506.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i703_i507.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: primed pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i703_i508.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i704_i502.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i704_i503.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i704_i505.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i704_i506.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i704_i507.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i705_i502.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i705_i503.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i705_i505.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i705_i506.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i706_i502.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i706_i503.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i706_i505.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i706_i507.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i707_i502.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 in an RNAse-inhibitor supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i707_i503.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i707_i507.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i710_i502.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i710_i503.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i710_i506.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: primed pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i710_i507.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i711_i502.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i711_i503.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i711_i505.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: primed pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i711_i506.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i711_i507.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i712_i502.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i712_i503.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i712_i505.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i712_i506.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i712_i507.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i714_i502.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: naïve pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

text: Protocols: Cells were dissociated in Accutase for 5 min and pipetted vigorously to obtain a single cell suspension in normal culture media. Single cells were picked by mouth pipette using a blunted microcapillary with internal diameter 15 μM and under a dissection microscope. Cells were collected into 0.2 mL tubes with 4 μL lysis buffer and immediately snap frozen on dry ice. RNA separation was performed using biotinylated oligo-dT30VN-tailed oligonucleotides (IDT) conjugated to Dynabeads Streptavidin C1 in an RNAse-inhibitor supplemented buffer solution. Sequencing libraries were prepared according to an adapted version of the G&T protocol previously described. Samples were transferred to a 96-well plate and prepared for both transcriptome and methylome sequencing, by physical separation of genomic DNA (gDNA) from messenger RNA (mRNA).

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i714_i503.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i714_i505.HKJ5LBBXY

text: ArrayExpress

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

characteristic: organism

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK


characteristic: External Id

text: UNIVERSITY OF CAMBRIDGE

text: public

characteristic: INSDC status

text: E-MTAB-93491631874715:SLX.19811.i714_i506.HKJ5LBBXY

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: primed pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

characteristic: organism part

text: pass

text: Callithrix jacchus

text: OK


text: UNIVERSITY OF CAMBRIDGE

text: public

text: E-MTAB-93491631874715:SLX.19811.i714_i507.HKJ5LBBXY

text: ArrayExpress

characteristic: cell line

text: primed pluripotent stem cell

characteristic: cell type

text: white-tufted-ear marmoset

characteristic: description

text: embryo stage

characteristic: developmental stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: title


characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC center name

text: public

text: E-MTAB-93491631874715:SLX.19811.i715_i502.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

characteristic: common name

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

characteristic: post analysis well quality

text: Callithrix jacchus

text: OK


characteristic: ENA-LAST-UPDATE

text: UNIVERSITY OF CAMBRIDGE

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-93491631874715:SLX.19811.i715_i503.HKJ5LBBXY

text: ArrayExpress

text: naïve pluripotent stem cell

text: white-tufted-ear marmoset

text: embryo stage

text: Callithrix jacchus

text: Callithrix jacchus

text: blastocyst

text: pass

text: Callithrix jacchus

text: OK

characteristic: single cell well quality


E-MTAB-10944:Sample 1

characteristic: External Id

text: public

characteristic: INSDC status

text: E-MTAB-10944:Sample 1

tag: Namespace:University of Toronto Ontario Institute of Cancer Research

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: glial cell

text: human

text: Protocols: G797 cells were maintained in serum-free NeuroCult™ NS-A Basal Medium (STEMCELL Technologies Canada Inc) supplemented with N2, B27, EGF (10 ng/ml), and FGF-2 (10 ng/ml). For overexpression, cells were transfected with pcDNA3.1-Neomycin-HOXA10-AS or the control vector pcDNA3.1-Neomycin using Lipofectamine 3000 Reagent (Thermo Fisher Scientific) as per manufacturer’s protocol. Two days post transfection, 500ug/ml G418 was added to select cells with stably expressing genes of interest for 2 weeks. Stable cells with overexpression of HOXA10-AS or the vector only were harvested for RNA extraction. Overexpression of HOXA10-AS was confirmed using RT-PCR. For knockdown, transfection of DsiRNAs was performed using the Lipofectamine RNAiMAX Reagent (Thermo Fisher Scientific) as per manufacturer’s protocol. Three days post transfection, cells were harvested for RNA extraction. RNAs were extracted from cells using Quick-RNA Microprep Kit (Zymo Research) as per manufacturer’s protocol. The quality of RNAs were assessed by Agilent Fragment Analyzer. The high quality RNAs were used to prepare the sequencing libraries. RNA-seq libraries were prepared using the Illumina TruSeq Stranded mRNA Sample Prep Kit (20020594) as per manufacturer’s protocol. The barcoded cDNA libraries were then checked with Agilent Fragment Analyzer for fragment size and quantified with ddPCR (BioRad) using ddPCR™ Supermix for Probes (No dUTP) (BioRad cat#1863023) running in BioRad CFX96 Touch Real-Time PCR Detection System.

text: adult

text: brain glioblastoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: HOXA10-AS overexpression

characteristic: phenotype

text: Homo sapiens

text: Sample 1


E-MTAB-10944:Sample 10

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: University of Toronto Ontario Institute of Cancer Research

text: public

text: E-MTAB-10944:Sample 10

text: ArrayExpress

characteristic: cell line

text: glial cell

characteristic: cell type

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: brain glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: HOXA10-AS knockdown (siRNA #4)

text: siRNA #4 HOXA10-AS

characteristic: rna interference

text: Homo sapiens

text: Sample 10

characteristic: title


E-MTAB-10944:Sample 11

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: SRA accession

text: E-MTAB-10944:Sample 11

text: ArrayExpress

text: glial cell

text: human

characteristic: common name

text: adult

text: brain glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: HOXA10-AS knockdown (siRNA #4)

text: siRNA #4 HOXA10-AS

text: Homo sapiens

text: Sample 11


E-MTAB-10944:Sample 12

text: public

characteristic: INSDC status

text: E-MTAB-10944:Sample 12

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: glial cell

text: human

text: adult

text: brain glioblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: HOXA10-AS knockdown (siRNA #4)

characteristic: phenotype

text: siRNA #4 HOXA10-AS

text: Homo sapiens

text: Sample 12


E-MTAB-10944:Sample 13

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10944:Sample 13

text: ArrayExpress

characteristic: cell line

text: glial cell

characteristic: cell type

text: human

characteristic: description

text: adult

characteristic: developmental stage

text: brain glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: wild type (knockdown control)

text: non targeting siRNA

text: Homo sapiens

text: Sample 13


E-MTAB-10944:Sample 14

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10944:Sample 14

text: ArrayExpress

text: glial cell

text: human

text: adult

text: brain glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: wild type (knockdown control)

text: non targeting siRNA

characteristic: rna interference

text: Homo sapiens

text: Sample 14

characteristic: title


E-MTAB-10944:Sample 15

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10944:Sample 15

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: glial cell

text: human

characteristic: common name

text: adult

text: brain glioblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: wild type (knockdown control)

text: non targeting siRNA

text: Homo sapiens

text: Sample 15


E-MTAB-10944:Sample 2

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10944:Sample 2

text: ArrayExpress

characteristic: cell line

text: glial cell

characteristic: cell type

text: human

characteristic: description

text: adult

text: brain glioblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: HOXA10-AS overexpression

characteristic: phenotype

text: Homo sapiens

text: Sample 2


E-MTAB-10944:Sample 3

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

text: public

text: E-MTAB-10944:Sample 3

text: ArrayExpress

text: glial cell

text: human

text: adult

characteristic: developmental stage

text: brain glioblastoma

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: HOXA10-AS overexpression

text: Homo sapiens

text: Sample 3


E-MTAB-10944:Sample 4

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10944:Sample 4

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: glial cell

text: human

characteristic: common name

text: adult

text: brain glioblastoma

text: Homo sapiens

text: Homo sapiens

text: brain

text: wild type (overexpression control)

text: Homo sapiens

text: Sample 4

characteristic: title


E-MTAB-10944:Sample 5

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10944:Sample 5

text: ArrayExpress

characteristic: cell line

text: glial cell

characteristic: cell type

text: human

text: adult

text: brain glioblastoma

characteristic: disease

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: wild type (overexpression control)

text: Homo sapiens

text: Sample 5


E-MTAB-10944:Sample 6

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10944:Sample 6

text: ArrayExpress

text: glial cell

text: human

characteristic: description

text: adult

text: brain glioblastoma

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: brain

text: wild type (overexpression control)

characteristic: phenotype

text: Homo sapiens

text: Sample 6


E-MTAB-10944:Sample 7

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-10944:Sample 7

text: ArrayExpress

text: glial cell

text: human

text: adult

characteristic: developmental stage

text: brain glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

characteristic: organism part

text: HOXA10-AS knockdown (siRNA #1)

text: siRNA #1 HOXA10-AS

characteristic: rna interference

text: Homo sapiens

text: Sample 7


E-MTAB-10944:Sample 8

characteristic: ENA-CHECKLIST

characteristic: ENA-FIRST-PUBLIC

text: public

text: E-MTAB-10944:Sample 8

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

characteristic: cell line

text: glial cell

text: human

characteristic: common name

text: adult

text: brain glioblastoma

text: wild type genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: HOXA10-AS knockdown (siRNA #1)

text: siRNA #1 HOXA10-AS

text: Homo sapiens

text: Sample 8

characteristic: title


E-MTAB-10944:Sample 9

characteristic: ENA-LAST-UPDATE

characteristic: External Id

characteristic: INSDC center name

text: public

text: E-MTAB-10944:Sample 9

text: ArrayExpress

text: glial cell

characteristic: cell type

text: human

characteristic: description

text: adult

text: brain glioblastoma

characteristic: disease

text: wild type genotype

characteristic: genotype

text: Homo sapiens

text: Homo sapiens

text: brain

text: HOXA10-AS knockdown (siRNA #1)

text: siRNA #1 HOXA10-AS

text: Homo sapiens

text: Sample 9


characteristic: GISAID Accession ID

characteristic: INSDC first public

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

tag: Namespace:Institute for Infectious Diseases, Bern, Switzerland

text: SIB

text: Inselspital Bern (Covid-Track); Bern, Switzerland

characteristic: collecting institution

characteristic: collection date

text: Nicole Liechti, Christian Baumann, Miguel A Terrazos Miani, Sonja Gempeler, Loïc Borcard, Stefan Neuenschwander, Cora Sägesser, Pascal Bittel, Peter Keller, Franziska Suter-Riniker, Stephen L Leib, Alban Ramette

characteristic: collector name

text: Switzerland

characteristic: geographic location (country and/or sea)

text: BE

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/BE-IFIK-2693-2488/2021

characteristic: isolate

text: Severe acute respiratory syndrome coronavirus 2

characteristic: organism